[med-svn] [Debian Wiki] Update of "DebianMed/Meeting/Aberdeen2014_Report" by TimBooth

[Debian Wiki]

Dear Wiki user,

You have subscribed to a wiki page or wiki category on "Debian Wiki" for change notification.

The "DebianMed/Meeting/Aberdeen2014_Report" page has been changed by TimBooth:
https://wiki.debian.org/DebianMed/Meeting/Aberdeen2014_Report

Comment:
a work in progress

New page:
== Report of outputs from Debian Med Sprint Weekend 2014 ==

=== Group Reports ===

''(in no particular order)''

==== Jalview for Debian/Bio-Linux ===

Tim Booth and Jim Procter worked on this
 * Packaging of main workbench
   * Set up new build environment for Jim
   * Build of all Ubuntu packages on Debian
   * Updated to latest Jalview bugfix release and wrapper package for BL finished
   * Added SVG icon and default configuration
   * Committed all work to pkg-java SVN
   * Further customisation of package and launch without network enabled

Herve requested Jalview applet, so looking at server-side components related to deploying JV
JP had Jabaws working on our cluster on Sat. - will continue on Sun.



=== Personal Reports ===

==== Andreas Tille ====
 * Package uploads
  * Sponsored gnuhealth
  * New version of gnumed-server + gnumed-client
  * New version of flexbar, checking tests, contacted upstream about failing tests
  * Some changes at staden packaging
  * Worked with Detlef Wolf on upstream build system of bioinfo-c
  * seqtk (created in a life packaging session)
  * dnaclust (created in a life packaging session)
  * snp-sites sponsored for Jorge Soares
  * python3-fitbitscraper sponsored for Iain R. Learmonth
 * Presentation: Introduction into [[DebianMed/MoM|Mentoring of the Month]]
 * Live packaging session at Saturday afternoon packaging randomly picked (simple) packages suggested by the audience
 * Discussing issues about creating an ontology based in data in UDD (debtags+descriptions) with EDAM people
 * Working on the FAQ section of the Blends documentation (relation to DebTags)
 * Working together with Luiz Ibanez on VistA packaging
 * Running around to help people gaining their first packaging experience after the life packaging session yesterday
 * Enabling [[http://kgb.alioth.debian.org/alioth.html|kgb]] for Git repositories
 * Other stuff than Debian Med
  * uscan enhancements
  * Sponsering libcitygml for Debian GIS
  * Activate 4096bit GPG key
  * Fixing Debian Games tasks

==== Iain Learmonth ====

 * Learnt Debian packaging through participating in Andreas' live packaging of dnaclust and seqtk.
  * Sorted out a man page for dnaclust
 * Packaged python3-fitbitscraper
 * Spoke with Luca and agreed to package HEAVyBASE once there is documentation available for the package
 * Gave a demo of a Python application visualising personal health data from FitBit ([[http://i.imgur.com/0NUpGc2.png|Screenshot]]).
 * Took some pictures, link at bottom of main page.

==== Tim Booth ====

 * Worked on Jalview with Jim (see above)
 * Demonstrated packaging to Jim
 * Showed Galaxy packaging to Peter and got feedback
 * Discussed roadmap to making Bio-Linux love the Galaxy toolshed with Brad and Peter C
 * Planned with Kristoffer how to use the Tools Registry in BL and how to contribute
 * Connected to the Qlustar cluster and tried some basic ops
----
CategorySprint