[med-svn] [Debian Wiki] Update of "DebianMed/Meeting/Aberdeen2014_Report" by TimBooth

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The "DebianMed/Meeting/Aberdeen2014_Report" page has been changed by TimBooth:
https://wiki.debian.org/DebianMed/Meeting/Aberdeen2014_Report?action=diff&rev1=1&rev2=2

Comment:
still a work in progress

  
  ''(in no particular order)''
  
- ==== Jalview for Debian/Bio-Linux ===
+ ==== Jalview for Debian/Bio-Linux ====
  
  Tim Booth and Jim Procter worked on this
   * Packaging of main workbench
     * Set up new build environment for Jim
     * Build of all Ubuntu packages on Debian
-    * Updated to latest Jalview bugfix release and wrapper package for BL finished
+    * Updated to latest Jalview bugfix release (2.8.0b1) and wrapper package for BL finished
     * Added SVG icon and default configuration
     * Committed all work to pkg-java SVN
     * Further customisation of package and launch without network enabled
  
+  * Jaba/JabaWS for Debian
- Herve requested Jalview applet, so looking at server-side components related to deploying JV
+    * Herve requested Jalview applet, so looking at server-side components related to deploying JV on Qlustar
- JP had Jabaws working on our cluster on Sat. - will continue on Sun.
+    * Jim - tacking hard problems with Debian/Jaba and has Jaba working but not clustering.
+     * Planned to progress towards a package in the near future.
  
+ ==== Setting up the Qlustar HPC cluster demo ====
+ 
+ Luca Clivio, Tony Travis
+ 
+  * Objective: Credible demo of Bio-Linux GUI running on front-end of Qlustar cluster
+    * #0 Resolve DHCP problems preventing access to Cluster FE (Frontend) VM
+    * #1 Install Ubuntu Desktop on common NFS shared cluster chroot
+    * #2 Install x2go server and Gnome fall-back session
+    * #3 Tested from x2go client running under Bio-Linux on laptop
+    * #4 Install “ARB” X11 GUI phylogenetics suite (part of Bio-Linux)
+ 
+  * Looking at MrBayes MPI on Sunday.  There were some issues getting this to work.
  
  
  === Personal Reports ===
@@ -59, +73 @@

  
  ==== Tim Booth ====
  
-  * Worked on Jalview with Jim (see above)
+  * Gave a short talk on Bio-Linux and recent updates
+  * Discussed EOS cloud plans with Tony (private clouds running BL for data analysis)
+  * Worked on Jalview with Jim (see above) - uploaded new pkgs to Bio-Linux
   * Demonstrated packaging to Jim
   * Showed Galaxy packaging to Peter and got feedback
   * Discussed roadmap to making Bio-Linux love the Galaxy toolshed with Brad and Peter C