[med-svn] [bedtools] 02/14: Merge pull request #39 from nkindlon/master

[Charles Plessy]

This is an automated email from the git hooks/post-receive script.

plessy pushed a commit to branch master
in repository bedtools.

commit 4793c986f4c25a4e4341c664c8ee61e34a5bf3be
Merge: c8bfb02 77c1bda
Author: Aaron Quinlan <aaronquinlan at gmail.com>
Date:   Wed Feb 19 20:12:52 2014 -0500

    Merge pull request #39 from nkindlon/master
    
    Created new KeyListOps class to replace vectorOps. Converted map tool to...

 Makefile                                    |   1 +
 src/mapFile/Makefile                        |   1 +
 src/mapFile/mapFile.cpp                     | 227 +++++++++++-----
 src/mapFile/mapFile.h                       |  88 +-----
 src/mapFile/mapMain.cpp                     | 138 ----------
 src/utils/Contexts/ContextBase.cpp          |   9 -
 src/utils/Contexts/ContextBase.h            |   4 -
 src/utils/Contexts/ContextIntersect.h       |   2 +
 src/utils/Contexts/ContextMap.cpp           |  77 +++++-
 src/utils/Contexts/ContextMap.h             |  21 +-
 src/utils/Contexts/Makefile                 |   1 +
 src/utils/KeyListOps/KeyListOps.cpp         | 405 ++++++++++++++++++++++++++++
 src/utils/KeyListOps/KeyListOps.h           | 117 ++++++++
 src/utils/{Contexts => KeyListOps}/Makefile |  35 ++-
 src/utils/general/Makefile                  |   2 +-
 src/utils/general/QuickString.cpp           |  65 +++++
 src/utils/general/QuickString.h             |  19 ++
 test/map/test-map.sh                        |  27 +-
 18 files changed, 889 insertions(+), 350 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bedtools.git