[med-svn] [bedtools] 01/03: Build logs for 2.19.0-1.

Fri Mar 21 07:23:32 UTC 2014

This is an automated email from the git hooks/post-receive script.

plessy pushed a commit to branch meta
in repository bedtools.

commit ac84089eb97c7c24498744a9fe40c8209d1bcc1f
Author: Charles Plessy <plessy at debian.org>
Date:   Fri Mar 21 16:18:06 2014 +0900

    Build logs for 2.19.0-1.
---
 armel.log          | 1261 +++++++++++++++-----------
 armhf.log          | 1239 +++++++++++++++----------
 hurd-i386.log      | 1320 ++++++++++++++++-----------
 i386.log           | 1307 ++++++++++++++++-----------
 info               |   24 +-
 kfreebsd-amd64.log | 1234 +++++++++++++++----------
 kfreebsd-i386.log  | 1242 +++++++++++++++-----------
 mips.log           | 2528 +++++++++++++++++++++++++++++++---------------------
 mipsel.log         | 1280 +++++++++++++++-----------
 powerpc.log        | 1261 +++++++++++++++-----------
 s390x.log          | 1227 +++++++++++++++----------
 sparc.log          | 1190 ++++++++++++++-----------
 12 files changed, 9019 insertions(+), 6094 deletions(-)

diff --git a/armel.log b/armel.log
index 26b9c97..be7ad69 100644
--- a/armel.log
+++ b/armel.log
@@ -1,60 +1,74 @@
-From buildd at alwyn.debian.org Sun Nov 04 12:02:01 2012
-Return-path: <buildd at alwyn.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
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-From: buildd on alwyn <buildd at alwyn.debian.org>
-To: buildd-porters at alwyn.debian.org,logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on armel (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
+From buildd at arnold.debian.org Sun Feb 16 09:28:50 2014
+Return-path: <buildd at arnold.debian.org>
+Received: from mailly.debian.org ([2001:41b8:202:deb:6564:a62:52c3:4b72])
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+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 09:28:45 +0000
+From: buildd on arnold <buildd at arnold.debian.org>
+To: buildd-porters at arnold.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on armel (dist=sid)
+Key-Id: CF1DCD8E
+Message-Id: <E1WEy1m-0007yD-6N at arnold.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on alwyn.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on arnold.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (armel)                                  04 Nov 2012 11:28 ║
+║ bedtools 2.19.0-1 (armel)                                  16 Feb 2014 08:41 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: armel
-Get:1 http://ftp.uk.debian.org unstable InRelease [219 kB]
-Get:2 http://incoming.debian.org unstable InRelease [219 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6381 kB]
-Ign http://incoming.debian.org  InRelease
-Get:4 http://incoming.debian.org  Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6381 kB]
-Get:6 http://ftp.uk.debian.org unstable/contrib Sources [53.1 kB]
-Get:7 http://ftp.uk.debian.org unstable/non-free Sources [101 kB]
-Get:8 http://ftp.uk.debian.org unstable/main armel Packages [6040 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [53.1 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:11 http://incoming.debian.org unstable/main armel Packages [6040 kB]
-Get:12 http://ftp.uk.debian.org unstable/contrib armel Packages [36.9 kB]
-Get:13 http://incoming.debian.org unstable/contrib armel Packages [36.9 kB]
-Get:14 http://incoming.debian.org  Release [1141 B]
-Get:15 http://incoming.debian.org  Sources [16.2 kB]
-Get:16 http://incoming.debian.org  Packages [140 kB]
-Fetched 25.8 MB in 1min 36s (269 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: armel
+Host Architecture: armel
+Build Architecture: armel
+
+I: NOTICE: Log filtering will replace 'build/bedtools-xVr5wy/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-xVr5wy' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-armel-sbuild-bddfc3af-732e-4044-977a-528a6458e4f8' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://ftp.uk.debian.org unstable InRelease [199 kB]
+Get:2 http://incoming.debian.org unstable InRelease [199 kB]
+Get:3 http://ftp.uk.debian.org unstable/main Sources [7001 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:6 http://ftp.uk.debian.org unstable/contrib Sources [58.1 kB]
+Get:7 http://ftp.uk.debian.org unstable/non-free Sources [105 kB]
+Get:8 http://ftp.uk.debian.org unstable/main armel Packages [6437 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:11 http://incoming.debian.org unstable/main armel Packages [6437 kB]
+Get:12 http://ftp.uk.debian.org unstable/contrib armel Packages [42.3 kB]
+Get:13 http://incoming.debian.org unstable/contrib armel Packages [42.3 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main armel Packages [59.5 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib armel Packages [1076 B]
+Fetched 27.9 MB in 1min 12s (386 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -74,257 +88,280 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (779 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 3s (1245 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-uc09M3/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 60 not upgraded.
+Need to get 0 B/766 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10855 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-1yKOsu/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-12)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
-  python-minimal python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncurses5 libncursesw5 libpipeline1 libpython-stdlib
+  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libtinfo5
+  libunistring0 libxml2 man-db mime-support po-debconf python python-minimal
+  python2.7 python2.7-minimal quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
-  libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
-  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
-  po-debconf python python-minimal python2.7 python2.7-minimal quilt
-  zlib1g-dev
-0 upgraded, 33 newly installed, 0 to remove and 45 not upgraded.
-Need to get 16.2 MB of archives.
-After this operation, 45.1 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libncursesw5 armel 5.9-10 [120 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.2-1 [35.1 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libssl1.0.0 armel 1.0.1c-4 [1074 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armel 0.18.1.1-9 [26.4 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 5.11-2 [200 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armel 1:8.31-1 [247 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libsqlite3-0 armel 3.7.14.1-1 [419 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.8.0+dfsg1-6 [826 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armel 3.0.10-3 [22.8 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.33.12+really2.32.4-3 [1694 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.6-1 [120 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.1.0-1 [116 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armel 0.18.1.1-9 [132 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.3 [208 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.21-9 [1079 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.3-1 [1025 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main file armel 5.11-2 [51.4 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.1.1-9 [138 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main python2.7-minimal armel 2.7.3-5 [1675 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main python2.7 armel 2.7.3-5 [2718 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main html2text armel 1.3.2a-15 [97.0 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.1.1-9 [1888 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main diffstat armel 1.55-3 [28.6 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.7.dfsg-13 [211 kB]
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+The following packages will be upgraded:
+  libncurses5 libtinfo5
+2 upgraded, 34 newly installed, 0 to remove and 58 not upgraded.
+Need to get 14.3 MB/14.3 MB of archives.
+After this operation, 45.5 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libtinfo5 armel 5.9+20140118-1 [266 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libncurses5 armel 5.9+20140118-1 [77.7 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libncursesw5 armel 5.9+20140118-1 [101 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armel 1.2.6-2 [20.2 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libssl1.0.0 armel 1.0.1f-1 [814 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main groff-base armel 1.22.2-5 [1011 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armel 9.0.5 [212 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main man-db armel 2.6.6-1 [962 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armel 0.18.3.2-1 [29.0 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armel 1:5.14-2 [214 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libsqlite3-0 armel 3.8.3.1-1 [349 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armel 2.9.1+dfsg1-3 [845 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libffi6 armel 3.0.13-12 [17.3 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armel 2.38.2-5 [2078 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armel 0.6.8-2 [121 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armel 2.1.0-4 [118 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armel 0.9.3-5 [406 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libpython2.7-minimal armel 2.7.6-5 [346 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main python2.7-minimal armel 2.7.6-5 [1096 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main file armel 1:5.14-2 [53.8 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armel 0.18.3.2-1 [112 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libpython2.7-stdlib armel 2.7.6-5 [1831 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main python2.7 armel 2.7.6-5 [234 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main python-minimal armel 2.7.5-5 [39.1 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libpython-stdlib armel 2.7.5-5 [18.6 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main python armel 2.7.5-5 [146 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main gettext armel 0.18.3.2-1 [1144 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main diffstat armel 1.58-1 [27.4 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armel 1:1.2.8.dfsg-1 [214 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 16.2 MB in 8s (1990 kB/s)
+Fetched 14.3 MB in 6s (2299 kB/s)
+(Reading database ... 10855 files and directories currently installed.)
+Preparing to unpack .../libtinfo5_5.9+20140118-1_armel.deb ...
+Unpacking libtinfo5:armel (5.9+20140118-1) over (5.9+20130608-1) ...
+Setting up libtinfo5:armel (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
+(Reading database ... 10855 files and directories currently installed.)
+Preparing to unpack .../libncurses5_5.9+20140118-1_armel.deb ...
+Unpacking libncurses5:armel (5.9+20140118-1) over (5.9+20130608-1) ...
+Setting up libncurses5:armel (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
 Selecting previously unselected package libncursesw5:armel.
-(Reading database ... 10649 files and directories currently installed.)
-Unpacking libncursesw5:armel (from .../libncursesw5_5.9-10_armel.deb) ...
+(Reading database ... 10855 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_armel.deb ...
+Unpacking libncursesw5:armel (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:armel.
-Unpacking libpipeline1:armel (from .../libpipeline1_1.2.2-1_armel.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_armel.deb ...
+Unpacking libpipeline1:armel (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:armel.
-Unpacking libssl1.0.0:armel (from .../libssl1.0.0_1.0.1c-4_armel.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_armel.deb ...
+Unpacking libssl1.0.0:armel (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_armel.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_armel.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_armel.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:armel.
-Unpacking libasprintf0c2:armel (from .../libasprintf0c2_0.18.1.1-9_armel.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_armel.deb ...
+Unpacking libasprintf0c2:armel (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:armel.
-Unpacking libmagic1:armel (from .../libmagic1_5.11-2_armel.deb) ...
-Selecting previously unselected package libpcre3:armel.
-Unpacking libpcre3:armel (from .../libpcre3_1%3a8.31-1_armel.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_armel.deb ...
+Unpacking libmagic1:armel (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:armel.
-Unpacking libsqlite3-0:armel (from .../libsqlite3-0_3.7.14.1-1_armel.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_armel.deb ...
+Unpacking libsqlite3-0:armel (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:armel.
-Unpacking libxml2:armel (from .../libxml2_2.8.0+dfsg1-6_armel.deb) ...
-Selecting previously unselected package libffi5:armel.
-Unpacking libffi5:armel (from .../libffi5_3.0.10-3_armel.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_armel.deb ...
+Unpacking libxml2:armel (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:armel.
+Preparing to unpack .../libffi6_3.0.13-12_armel.deb ...
+Unpacking libffi6:armel (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:armel.
-Unpacking libglib2.0-0:armel (from .../libglib2.0-0_2.33.12+really2.32.4-3_armel.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_armel.deb ...
+Unpacking libglib2.0-0:armel (2.38.2-5) ...
 Selecting previously unselected package libcroco3:armel.
-Unpacking libcroco3:armel (from .../libcroco3_0.6.6-1_armel.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_armel.deb ...
+Unpacking libcroco3:armel (0.6.8-2) ...
 Selecting previously unselected package libexpat1:armel.
-Unpacking libexpat1:armel (from .../libexpat1_2.1.0-1_armel.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_armel.deb ...
+Unpacking libexpat1:armel (2.1.0-4) ...
 Selecting previously unselected package libunistring0:armel.
-Unpacking libunistring0:armel (from .../libunistring0_0.9.3-5_armel.deb) ...
-Selecting previously unselected package libgettextpo0:armel.
-Unpacking libgettextpo0:armel (from .../libgettextpo0_0.18.1.1-9_armel.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armel.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_armel.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_armel.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_armel.deb ...
+Unpacking libunistring0:armel (0.9.3-5) ...
+Selecting previously unselected package libpython2.7-minimal:armel.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_armel.deb ...
+Unpacking libpython2.7-minimal:armel (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_armel.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_armel.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_armel.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armel.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_armel.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_armel.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:armel.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_armel.deb ...
+Unpacking libpython2.7-stdlib:armel (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_armel.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_armel.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_armel.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:armel.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_armel.deb ...
+Unpacking libpython-stdlib:armel (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_armel.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_armel.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_armel.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_armel.deb) ...
+Preparing to unpack .../diffstat_1.58-1_armel.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:armel.
-Unpacking zlib1g-dev:armel (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_armel.deb) ...
-Setting up libncursesw5:armel (5.9-10) ...
-Setting up libpipeline1:armel (1.2.2-1) ...
-Setting up libssl1.0.0:armel (1.0.1c-4) ...
-Setting up libasprintf0c2:armel (0.18.1.1-9) ...
-Setting up libmagic1:armel (5.11-2) ...
-Setting up libpcre3:armel (1:8.31-1) ...
-Setting up libsqlite3-0:armel (3.7.14.1-1) ...
-Setting up libxml2:armel (2.8.0+dfsg1-6) ...
-Setting up libffi5:armel (3.0.10-3) ...
-Setting up libglib2.0-0:armel (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:armel (0.6.6-1) ...
-Setting up libexpat1:armel (2.1.0-1) ...
-Setting up libunistring0:armel (0.9.3-5) ...
-Setting up libgettextpo0:armel (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_armel.deb ...
+Unpacking zlib1g-dev:armel (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:armel (5.9+20140118-1) ...
+Setting up libpipeline1:armel (1.2.6-2) ...
+Setting up libssl1.0.0:armel (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:armel (0.18.3.2-1) ...
+Setting up libmagic1:armel (1:5.14-2) ...
+Setting up libsqlite3-0:armel (3.8.3.1-1) ...
+Setting up libxml2:armel (2.9.1+dfsg1-3) ...
+Setting up libffi6:armel (3.0.13-12) ...
+Setting up libglib2.0-0:armel (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:armel (0.6.8-2) ...
+Setting up libexpat1:armel (2.1.0-4) ...
+Setting up libunistring0:armel (0.9.3-5) ...
+Setting up libpython2.7-minimal:armel (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:armel (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:armel (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:armel (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32 armel (armv5tel)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.8 g++-4.6_4.6.3-9 gcc-4.6_4.6.3-9 libc6-dev_2.13-35 libstdc++6_4.7.1-7 libstdc++6-4.6-dev_4.6.3-9 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-9 dash_0.5.7-3 debconf_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.8 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2- [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:armel (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-mv78xx0 armel (armv5tel)
+Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5 g++-4.8_4.8.2-10 gcc-4.8_4.8.2-10 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-10 libstdc++6_4.8.2-10 linux-libc-dev_3.12.6-1
+Package versions: apt_0.9.14.2 base-files_7.2 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-1 cpp-4.8_4.8.2-10 dash_0.5.7-3 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.5 dpkg-dev_1.17.5 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2- [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -334,35 +371,55 @@ Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-armel-sbuild
+SCHROOT_CHROOT_NAME=sid-armel-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-armel-sbuild-bddfc3af-732e-4044-977a-528a6458e4f8
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture armel
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -374,16 +431,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/installation.rst
+Restoring docs/content/related-tools.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -396,41 +458,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -482,48 +588,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -535,6 +655,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -557,13 +679,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -573,31 +699,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -605,22 +744,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -632,20 +797,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -657,7 +828,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -678,7 +849,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -762,6 +933,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -776,7 +949,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -792,7 +965,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-armel-z49NH1/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -800,10 +973,10 @@ dh_installdeb -pbedtools
 dh_perl -pbedtools 
 dh_shlibdeps -pbedtools    
 	dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
-dpkg-shlibdeps: warning: debian/bedtools/usr/bin/bedtools contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1 at GCC_3.5: it's probably a plugin
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -812,64 +985,84 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_armel.deb'.
- dpkg-genchanges -B -marmel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org> >../bedtools_2.17.0-1_armel.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_armel.deb'.
+ dpkg-genchanges -B -marmel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org> >../bedtools_2.19.0-1_armel.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
 dpkg-buildpackage: binary only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1201
+Build finished at 20140216-0928
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_armel.changes:
+────────────────────────────────
 
-bedtools_2.17.0-1_armel.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: armel
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: armel Build Daemon (alwyn) <buildd_armel-alwyn at buildd.debian.org>
+Maintainer: armel Build Daemon (arnold) <buildd_armel-arnold at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 1e446ef69cef4430e63b201d1d801c4e513d3170 383128 bedtools_2.17.0-1_armel.deb
+ a924d196cf54a27ab0ed7a8aba860317115af113 471982 bedtools_2.19.0-1_armel.deb
 Checksums-Sha256: 
- d50b46feb8485155e938fd057d9c49504070b91e9385d7805e3638e86e5c2a10 383128 bedtools_2.17.0-1_armel.deb
+ 01c3d62233b750ab3205cd2f06596840d8da2405ddc45e2afb2c0a8140719477 471982 bedtools_2.19.0-1_armel.deb
 Files: 
- fcc2a53539386c4754217b404641bdc3 383128 science optional bedtools_2.17.0-1_armel.deb
+ d58d0b9c2ae05dd0d0ce3db077046804 471982 science optional bedtools_2.19.0-1_armel.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_armel.deb
+bedtools_2.19.0-1_armel.deb
 ───────────────────────────
 
  new debian package, version 2.0.
- size 383128 bytes: control archive= 4107 bytes.
+ size 471982 bytes: control archive=5753 bytes.
       32 bytes,     1 lines      conffiles            
-     833 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     834 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: armel
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1368
+ Installed-Size: 2072
  Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
@@ -882,204 +1075,270 @@ bedtools_2.17.0-1_armel.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./etc/
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./etc/bash_completion.d/
--rw-r--r-- root/root       638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./usr/share/doc/bedtools/
--rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
--rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
-drwxr-xr-x root/root         0 2012-11-04 11:33 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
-drwxr-xr-x root/root         0 2012-11-04 12:01 ./usr/bin/
--rwxr-xr-x root/root        41 2012-11-04 12:01 ./usr/bin/annotateBed
--rwxr-xr-x root/root        37 2012-11-04 12:01 ./usr/bin/sortBed
--rwxr-xr-x root/root        44 2012-11-04 12:01 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root        39 2012-11-04 12:01 ./usr/bin/windowBed
--rwxr-xr-x root/root        40 2012-11-04 12:01 ./usr/bin/shuffleBed
--rwxr-xr-x root/root        39 2012-11-04 12:01 ./usr/bin/randomBed
--rwxr-xr-x root/root        43 2012-11-04 12:01 ./usr/bin/complementBed
--rwxr-xr-x root/root        38 2012-11-04 12:01 ./usr/bin/linksBed
--rwxr-xr-x root/root        42 2012-11-04 12:01 ./usr/bin/pairToBed
--rwxr-xr-x root/root        36 2012-11-04 12:01 ./usr/bin/nucBed
--rwxr-xr-x root/root        43 2012-11-04 12:01 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        38 2012-11-04 12:01 ./usr/bin/flankBed
--rwxr-xr-x root/root        40 2012-11-04 12:01 ./usr/bin/closestBed
--rwxr-xr-x root/root        38 2012-11-04 12:01 ./usr/bin/mergeBed
--rwxr-xr-x root/root        42 2012-11-04 12:01 ./usr/bin/intersectBed
--rwxr-xr-x root/root        41 2012-11-04 12:01 ./usr/bin/multiBamCov
--rwxr-xr-x root/root        36 2012-11-04 12:01 ./usr/bin/bedToIgv
--rwxr-xr-x root/root        36 2012-11-04 12:01 ./usr/bin/tagBam
--rwxr-xr-x root/root        36 2012-11-04 12:01 ./usr/bin/mapBed
--rwxr-xr-x root/root        40 2012-11-04 12:01 ./usr/bin/clusterBed
--rwxr-xr-x root/root        43 2012-11-04 12:01 ./usr/bin/pairToPair
--rwxr-xr-x root/root        43 2012-11-04 12:01 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root        41 2012-11-04 12:01 ./usr/bin/bamToBed
--rwxr-xr-x root/root        41 2012-11-04 12:01 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root   1194316 2012-11-04 12:01 ./usr/bin/bedtools
--rwxr-xr-x root/root        41 2012-11-04 12:01 ./usr/bin/coverageBed
--rwxr-xr-x root/root        44 2012-11-04 12:01 ./usr/bin/windowMaker
--rwxr-xr-x root/root        40 2012-11-04 12:01 ./usr/bin/getOverlap
--rwxr-xr-x root/root        43 2012-11-04 12:01 ./usr/bin/bamToFastq
--rwxr-xr-x root/root        42 2012-11-04 12:01 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root        41 2012-11-04 12:01 ./usr/bin/subtractBed
--rwxr-xr-x root/root        41 2012-11-04 12:01 ./usr/bin/bedToBam
--rwxr-xr-x root/root        42 2012-11-04 12:01 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root        37 2012-11-04 12:01 ./usr/bin/slopBed
--rwxr-xr-x root/root        42 2012-11-04 12:01 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        39 2012-11-04 12:01 ./usr/bin/expandCols
+drwxr-xr-x root/root         0 2014-02-16 09:27 ./
+drwxr-xr-x root/root         0 2014-02-16 09:27 ./usr/
+drwxr-xr-x root/root         0 2014-02-16 09:28 ./usr/bin/
+-rwxr-xr-x root/root        39 2014-02-16 09:27 ./usr/bin/expandCols
+-rwxr-xr-x root/root        38 2014-02-16 09:27 ./usr/bin/mergeBed
+-rwxr-xr-x root/root        41 2014-02-16 09:27 ./usr/bin/multiBamCov
+-rwxr-xr-x root/root        41 2014-02-16 09:27 ./usr/bin/annotateBed
+-rwxr-xr-x root/root        40 2014-02-16 09:27 ./usr/bin/shuffleBed
+-rwxr-xr-x root/root        36 2014-02-16 09:27 ./usr/bin/mapBed
+-rwxr-xr-x root/root        39 2014-02-16 09:27 ./usr/bin/randomBed
+-rwxr-xr-x root/root        40 2014-02-16 09:27 ./usr/bin/getOverlap
+-rwxr-xr-x root/root        39 2014-02-16 09:27 ./usr/bin/windowBed
+-rwxr-xr-x root/root        40 2014-02-16 09:27 ./usr/bin/closestBed
+-rwxr-xr-x root/root   1378660 2014-02-16 09:28 ./usr/bin/bedtools
+-rwxr-xr-x root/root        38 2014-02-16 09:27 ./usr/bin/linksBed
+-rwxr-xr-x root/root        41 2014-02-16 09:27 ./usr/bin/subtractBed
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+-rw-r--r-- root/root      5392 2014-02-15 10:24 ./usr/share/doc/bedtools/copyright
+-rw-r--r-- root/root     14454 2014-02-09 02:29 ./usr/share/doc/bedtools/changelog.gz
+drwxr-xr-x root/root         0 2014-02-16 09:27 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 09:27 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-armel-sbuild-14d71a20-3ac0-4510-84f8-f149dea16908/build/buildd-bedtools_2.17.0-1-armel-z49NH1
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: armel
-Build-Space: 78204
-Build-Time: 1718
+Build Architecture: armel
+Build-Space: 104020
+Build-Time: 2494
 Distribution: sid
-Install-Time: 138
-Job: bedtools_2.17.0-1
+Host Architecture: armel
+Install-Time: 224
+Job: bedtools_2.19.0-1
+Machine Architecture: armel
 Package: bedtools
-Package-Time: 1989
-Source-Version: 2.17.0-1
-Space: 78204
+Package-Time: 2834
+Source-Version: 2.19.0-1
+Space: 104020
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1201
-Build needed 00:33:09, 78204k disc space
-Signature with key '4CB559DB' requested:
+Finished at 20140216-0928
+Build needed 00:47:14, 104020k disc space
+Signature with key 'CF1DCD8E' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_armel.changes CF1DCD8E
 
+Successfully signed changes file
diff --git a/armhf.log b/armhf.log
index ef3a45e..dfee92a 100644
--- a/armhf.log
+++ b/armhf.log
@@ -1,60 +1,74 @@
-From buildd at hummel.debian.org Sun Nov 04 11:57:48 2012
-Return-path: <buildd at hummel.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at hummel.debian.org>)
-	id 1TUypn-0004lC-PA
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:57:48 +0000
-Received: from hummel.ynic.york.ac.uk ([144.32.168.76] helo=hummel.debian.org)
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=hummel.debian.org, EMAIL=hostmaster at hummel.debian.org (verified)
-	by merikanto.debian.org with esmtps
-	(TLS1.0:DHE_RSA_AES_128_CBC_SHA1:16) (Exim 4.72)
-	(envelope-from <buildd at hummel.debian.org>) id 1TUypm-00078u-IJ
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:57:46 +0000
-Received: from buildd by hummel.debian.org with local (Exim 4.80)
-	(envelope-from <buildd at hummel.debian.org>)
-	id 1TUypj-0004cO-Jh; Sun, 04 Nov 2012 11:57:43 +0000
-From: buildd on hummel <buildd at hummel.debian.org>
-To: logs at buildd.debian.org,buildd-porters at hummel.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on armhf (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Message-Id: <E1TUypj-0004cO-Jh at hummel.debian.org>
-Date: Sun, 04 Nov 2012 11:57:43 +0000
+From buildd at hasse.debian.org Sun Feb 16 08:52:48 2014
+Return-path: <buildd at hasse.debian.org>
+Received: from muffat.debian.org ([2607:f8f0:610:4000:6564:a62:ce0c:1392])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at hasse.debian.org>)
+ id 1WExSy-0003Mz-6g
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 08:52:48 +0000
+Received: from [217.140.96.68] (helo=hasse.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=hasse.debian.org, EMAIL=hostmaster at hasse.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at hasse.debian.org>)
+ id 1WExSw-0002Vp-0I
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 08:52:46 +0000
+Received: from buildd by hasse.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at hasse.debian.org>)
+ id 1WExSp-00055P-1R; Sun, 16 Feb 2014 08:52:39 +0000
+Content-Transfer-Encoding: binary
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; T1.35; A2.09; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 08:52:38 +0000
+From: buildd on hasse <buildd at hasse.debian.org>
+To: buildd-porters at hasse.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on armhf (dist=sid)
+Key-Id: 12E2A4D4
+Message-Id: <E1WExSp-00055P-1R at hasse.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on hummel.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on hasse.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (armhf)                                  04 Nov 2012 11:27 ║
+║ bedtools 2.19.0-1 (armhf)                                  16 Feb 2014 08:10 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: armhf
-Get:1 http://ftp.uk.debian.org unstable InRelease [219 kB]
-Get:2 http://incoming.debian.org unstable InRelease [219 kB]
-Get:3 http://ftp.uk.debian.org unstable/main Sources [6381 kB]
-Ign http://incoming.debian.org  InRelease
-Get:4 http://incoming.debian.org  Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6381 kB]
-Get:6 http://ftp.uk.debian.org unstable/contrib Sources [53.1 kB]
-Get:7 http://ftp.uk.debian.org unstable/non-free Sources [101 kB]
-Get:8 http://ftp.uk.debian.org unstable/main armhf Packages [6006 kB]
-Get:9 http://ftp.uk.debian.org unstable/contrib armhf Packages [35.8 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [53.1 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:12 http://incoming.debian.org unstable/main armhf Packages [6006 kB]
-Get:13 http://incoming.debian.org unstable/contrib armhf Packages [35.8 kB]
-Get:14 http://incoming.debian.org  Release [1141 B]
-Get:15 http://incoming.debian.org  Sources [16.2 kB]
-Get:16 http://incoming.debian.org  Packages [140 kB]
-Fetched 25.8 MB in 1min 31s (281 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: armhf
+Host Architecture: armhf
+Build Architecture: armhf
+
+I: NOTICE: Log filtering will replace 'build/bedtools-viBUTc/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-viBUTc' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-armhf-sbuild-26bdb268-c4f6-45d8-a7ec-a288afbc88dc' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://incoming.debian.org unstable InRelease [199 kB]
+Get:2 http://ftp.uk.debian.org unstable InRelease [199 kB]
+Get:3 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:4 http://ftp.uk.debian.org unstable/main Sources [7001 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:6 http://ftp.uk.debian.org unstable/contrib Sources [58.1 kB]
+Get:7 http://ftp.uk.debian.org unstable/non-free Sources [105 kB]
+Get:8 http://ftp.uk.debian.org unstable/main armhf Packages [6429 kB]
+Get:9 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:10 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:11 http://incoming.debian.org unstable/main armhf Packages [6429 kB]
+Get:12 http://ftp.uk.debian.org unstable/contrib armhf Packages [43.3 kB]
+Get:13 http://incoming.debian.org unstable/contrib armhf Packages [43.3 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main armhf Packages [62.4 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib armhf Packages [1076 B]
+Fetched 27.9 MB in 58s (475 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -74,233 +88,280 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (615 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 2s (1393 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-x0_CE1/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 59 not upgraded.
+Need to get 0 B/764 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10987 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-uTzuWf/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-libc6-dev: already installed (2.13-36)
-gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
-  python-minimal python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncurses5 libncursesw5 libpipeline1 libpython-stdlib
+  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libtinfo5
+  libunistring0 libxml2 man-db mime-support po-debconf python python-minimal
+  python2.7 python2.7-minimal quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
-  libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
-  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
-  po-debconf python python-minimal python2.7 python2.7-minimal quilt
-  zlib1g-dev
-0 upgraded, 33 newly installed, 0 to remove and 1 not upgraded.
-Need to get 15.8 MB of archives.
-After this operation, 41.5 MB of additional disk space will be used.
-Get:1 http://ftp.uk.debian.org/debian/ unstable/main libncursesw5 armhf 5.9-10 [111 kB]
-Get:2 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.2-1 [33.7 kB]
-Get:3 http://ftp.uk.debian.org/debian/ unstable/main libssl1.0.0 armhf 1.0.1c-4 [1018 kB]
-Get:4 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.1.1-9 [26.4 kB]
-Get:5 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 5.11-2 [199 kB]
-Get:6 http://ftp.uk.debian.org/debian/ unstable/main libpcre3 armhf 1:8.31-1 [246 kB]
-Get:7 http://ftp.uk.debian.org/debian/ unstable/main libsqlite3-0 armhf 3.7.14.1-1 [389 kB]
-Get:8 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.8.0+dfsg1-6 [786 kB]
-Get:9 http://ftp.uk.debian.org/debian/ unstable/main libffi5 armhf 3.0.10-3+b1 [22.3 kB]
-Get:10 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.33.12+really2.32.4-3 [1708 kB]
-Get:11 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.6-1 [120 kB]
-Get:12 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.1.0-1 [109 kB]
-Get:13 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
-Get:14 http://ftp.uk.debian.org/debian/ unstable/main libgettextpo0 armhf 0.18.1.1-9 [122 kB]
-Get:15 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.3 [204 kB]
-Get:16 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.21-9 [1031 kB]
-Get:17 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.3-1 [1014 kB]
-Get:18 http://ftp.uk.debian.org/debian/ unstable/main file armhf 5.11-2 [51.5 kB]
-Get:19 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.1.1-9 [130 kB]
-Get:20 http://ftp.uk.debian.org/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:21 http://ftp.uk.debian.org/debian/ unstable/main python2.7-minimal armhf 2.7.3-5 [1609 kB]
-Get:22 http://ftp.uk.debian.org/debian/ unstable/main python2.7 armhf 2.7.3-5 [2650 kB]
-Get:23 http://ftp.uk.debian.org/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:24 http://ftp.uk.debian.org/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:25 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:26 http://ftp.uk.debian.org/debian/ unstable/main html2text armhf 1.3.2a-15+b1 [94.6 kB]
-Get:27 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.1.1-9 [1828 kB]
-Get:28 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:29 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:30 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:31 http://ftp.uk.debian.org/debian/ unstable/main diffstat armhf 1.55-3 [27.5 kB]
-Get:32 http://ftp.uk.debian.org/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:33 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.7.dfsg-13 [209 kB]
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+The following packages will be upgraded:
+  libncurses5 libtinfo5
+2 upgraded, 34 newly installed, 0 to remove and 57 not upgraded.
+Need to get 14.1 MB/14.1 MB of archives.
+After this operation, 41.9 MB of additional disk space will be used.
+Get:1 http://ftp.uk.debian.org/debian/ unstable/main libtinfo5 armhf 5.9+20140118-1 [265 kB]
+Get:2 http://ftp.uk.debian.org/debian/ unstable/main libncurses5 armhf 5.9+20140118-1 [76.4 kB]
+Get:3 http://ftp.uk.debian.org/debian/ unstable/main libncursesw5 armhf 5.9+20140118-1 [102 kB]
+Get:4 http://ftp.uk.debian.org/debian/ unstable/main libpipeline1 armhf 1.2.6-2 [20.5 kB]
+Get:5 http://ftp.uk.debian.org/debian/ unstable/main libssl1.0.0 armhf 1.0.1f-1 [831 kB]
+Get:6 http://ftp.uk.debian.org/debian/ unstable/main groff-base armhf 1.22.2-5 [957 kB]
+Get:7 http://ftp.uk.debian.org/debian/ unstable/main bsdmainutils armhf 9.0.5 [204 kB]
+Get:8 http://ftp.uk.debian.org/debian/ unstable/main man-db armhf 2.6.6-1 [962 kB]
+Get:9 http://ftp.uk.debian.org/debian/ unstable/main libasprintf0c2 armhf 0.18.3.2-1 [29.0 kB]
+Get:10 http://ftp.uk.debian.org/debian/ unstable/main libmagic1 armhf 1:5.14-2 [214 kB]
+Get:11 http://ftp.uk.debian.org/debian/ unstable/main libsqlite3-0 armhf 3.8.3.1-1 [355 kB]
+Get:12 http://ftp.uk.debian.org/debian/ unstable/main libxml2 armhf 2.9.1+dfsg1-3 [703 kB]
+Get:13 http://ftp.uk.debian.org/debian/ unstable/main libffi6 armhf 3.0.13-12 [17.4 kB]
+Get:14 http://ftp.uk.debian.org/debian/ unstable/main libglib2.0-0 armhf 2.38.2-5 [2089 kB]
+Get:15 http://ftp.uk.debian.org/debian/ unstable/main libcroco3 armhf 0.6.8-2 [121 kB]
+Get:16 http://ftp.uk.debian.org/debian/ unstable/main libexpat1 armhf 2.1.0-4 [110 kB]
+Get:17 http://ftp.uk.debian.org/debian/ unstable/main libunistring0 armhf 0.9.3-5+b1 [404 kB]
+Get:18 http://ftp.uk.debian.org/debian/ unstable/main libpython2.7-minimal armhf 2.7.6-5 [347 kB]
+Get:19 http://ftp.uk.debian.org/debian/ unstable/main python2.7-minimal armhf 2.7.6-5 [1099 kB]
+Get:20 http://ftp.uk.debian.org/debian/ unstable/main file armhf 1:5.14-2 [53.9 kB]
+Get:21 http://ftp.uk.debian.org/debian/ unstable/main gettext-base armhf 0.18.3.2-1 [113 kB]
+Get:22 http://ftp.uk.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:23 http://ftp.uk.debian.org/debian/ unstable/main libpython2.7-stdlib armhf 2.7.6-5 [1821 kB]
+Get:24 http://ftp.uk.debian.org/debian/ unstable/main python2.7 armhf 2.7.6-5 [235 kB]
+Get:25 http://ftp.uk.debian.org/debian/ unstable/main python-minimal armhf 2.7.5-5 [39.2 kB]
+Get:26 http://ftp.uk.debian.org/debian/ unstable/main libpython-stdlib armhf 2.7.5-5 [18.6 kB]
+Get:27 http://ftp.uk.debian.org/debian/ unstable/main python armhf 2.7.5-5 [147 kB]
+Get:28 http://ftp.uk.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:29 http://ftp.uk.debian.org/debian/ unstable/main gettext armhf 0.18.3.2-1 [1149 kB]
+Get:30 http://ftp.uk.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:31 http://ftp.uk.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:32 http://ftp.uk.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:33 http://ftp.uk.debian.org/debian/ unstable/main diffstat armhf 1.58-1 [27.4 kB]
+Get:34 http://ftp.uk.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:35 http://ftp.uk.debian.org/debian/ unstable/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [209 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 15.8 MB in 5s (2645 kB/s)
+Fetched 14.1 MB in 5s (2805 kB/s)
+(Reading database ... 10987 files and directories currently installed.)
+Preparing to unpack .../libtinfo5_5.9+20140118-1_armhf.deb ...
+Unpacking libtinfo5:armhf (5.9+20140118-1) over (5.9+20130608-1) ...
+Setting up libtinfo5:armhf (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
+(Reading database ... 10987 files and directories currently installed.)
+Preparing to unpack .../libncurses5_5.9+20140118-1_armhf.deb ...
+Unpacking libncurses5:armhf (5.9+20140118-1) over (5.9+20130608-1) ...
+Setting up libncurses5:armhf (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
 Selecting previously unselected package libncursesw5:armhf.
-(Reading database ... 10832 files and directories currently installed.)
-Unpacking libncursesw5:armhf (from .../libncursesw5_5.9-10_armhf.deb) ...
+(Reading database ... 10987 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_armhf.deb ...
+Unpacking libncursesw5:armhf (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:armhf.
-Unpacking libpipeline1:armhf (from .../libpipeline1_1.2.2-1_armhf.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_armhf.deb ...
+Unpacking libpipeline1:armhf (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:armhf.
-Unpacking libssl1.0.0:armhf (from .../libssl1.0.0_1.0.1c-4_armhf.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_armhf.deb ...
+Unpacking libssl1.0.0:armhf (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_armhf.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_armhf.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_armhf.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:armhf.
-Unpacking libasprintf0c2:armhf (from .../libasprintf0c2_0.18.1.1-9_armhf.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_armhf.deb ...
+Unpacking libasprintf0c2:armhf (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:armhf.
-Unpacking libmagic1:armhf (from .../libmagic1_5.11-2_armhf.deb) ...
-Selecting previously unselected package libpcre3:armhf.
-Unpacking libpcre3:armhf (from .../libpcre3_1%3a8.31-1_armhf.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_armhf.deb ...
+Unpacking libmagic1:armhf (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:armhf.
-Unpacking libsqlite3-0:armhf (from .../libsqlite3-0_3.7.14.1-1_armhf.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_armhf.deb ...
+Unpacking libsqlite3-0:armhf (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:armhf.
-Unpacking libxml2:armhf (from .../libxml2_2.8.0+dfsg1-6_armhf.deb) ...
-Selecting previously unselected package libffi5:armhf.
-Unpacking libffi5:armhf (from .../libffi5_3.0.10-3+b1_armhf.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_armhf.deb ...
+Unpacking libxml2:armhf (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:armhf.
+Preparing to unpack .../libffi6_3.0.13-12_armhf.deb ...
+Unpacking libffi6:armhf (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:armhf.
-Unpacking libglib2.0-0:armhf (from .../libglib2.0-0_2.33.12+really2.32.4-3_armhf.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_armhf.deb ...
+Unpacking libglib2.0-0:armhf (2.38.2-5) ...
 Selecting previously unselected package libcroco3:armhf.
-Unpacking libcroco3:armhf (from .../libcroco3_0.6.6-1_armhf.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_armhf.deb ...
+Unpacking libcroco3:armhf (0.6.8-2) ...
 Selecting previously unselected package libexpat1:armhf.
-Unpacking libexpat1:armhf (from .../libexpat1_2.1.0-1_armhf.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_armhf.deb ...
+Unpacking libexpat1:armhf (2.1.0-4) ...
 Selecting previously unselected package libunistring0:armhf.
-Unpacking libunistring0:armhf (from .../libunistring0_0.9.3-5+b1_armhf.deb) ...
-Selecting previously unselected package libgettextpo0:armhf.
-Unpacking libgettextpo0:armhf (from .../libgettextpo0_0.18.1.1-9_armhf.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_armhf.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_armhf.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_armhf.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5+b1_armhf.deb ...
+Unpacking libunistring0:armhf (0.9.3-5+b1) ...
+Selecting previously unselected package libpython2.7-minimal:armhf.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_armhf.deb ...
+Unpacking libpython2.7-minimal:armhf (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_armhf.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_armhf.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_armhf.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_armhf.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_armhf.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_armhf.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:armhf.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_armhf.deb ...
+Unpacking libpython2.7-stdlib:armhf (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_armhf.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_armhf.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_armhf.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:armhf.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_armhf.deb ...
+Unpacking libpython-stdlib:armhf (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_armhf.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15+b1_armhf.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_armhf.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_armhf.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_armhf.deb) ...
+Preparing to unpack .../diffstat_1.58-1_armhf.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:armhf.
-Unpacking zlib1g-dev:armhf (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_armhf.deb) ...
-Setting up libncursesw5:armhf (5.9-10) ...
-Setting up libpipeline1:armhf (1.2.2-1) ...
-Setting up libssl1.0.0:armhf (1.0.1c-4) ...
-Setting up libasprintf0c2:armhf (0.18.1.1-9) ...
-Setting up libmagic1:armhf (5.11-2) ...
-Setting up libpcre3:armhf (1:8.31-1) ...
-Setting up libsqlite3-0:armhf (3.7.14.1-1) ...
-Setting up libxml2:armhf (2.8.0+dfsg1-6) ...
-Setting up libffi5:armhf (3.0.10-3+b1) ...
-Setting up libglib2.0-0:armhf (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:armhf (0.6.6-1) ...
-Setting up libexpat1:armhf (2.1.0-1) ...
-Setting up libunistring0:armhf (0.9.3-5+b1) ...
-Setting up libgettextpo0:armhf (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_armhf.deb ...
+Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:armhf (5.9+20140118-1) ...
+Setting up libpipeline1:armhf (1.2.6-2) ...
+Setting up libssl1.0.0:armhf (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:armhf (0.18.3.2-1) ...
+Setting up libmagic1:armhf (1:5.14-2) ...
+Setting up libsqlite3-0:armhf (3.8.3.1-1) ...
+Setting up libxml2:armhf (2.9.1+dfsg1-3) ...
+Setting up libffi6:armhf (3.0.13-12) ...
+Setting up libglib2.0-0:armhf (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:armhf (0.6.8-2) ...
+Setting up libexpat1:armhf (2.1.0-4) ...
+Setting up libunistring0:armhf (0.9.3-5+b1) ...
+Setting up libpython2.7-minimal:armhf (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:armhf (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:armhf (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:armhf (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 3.2.0-3-mx5 armhf (armv7l)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.3-12 gcc-4.6_4.6.3-12 libc6-dev_2.13-36 libstdc++6_4.7.2-4 libstdc++6-4.6-dev_4.6.3-12 linux-libc-dev_3.2.32-1
-Package versions: apt_0.9.7.6 base-files_6.12 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.2 build-essential_11.5+b1 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.3 cpp_4:4.6.3-8 cpp-4.6_4.6.3-12 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.4 diffstat_1.55-3 diffutils_1:3.2-7 dpkg_1.16.9 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-mx5 armhf (armv7l)
+Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5 g++-4.8_4.8.2-10 gcc-4.8_4.8.2-10 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-10 libstdc++6_4.8.2-10 linux-libc-dev_3.11.10-1
+Package versions: apt_0.9.14.1 base-files_7.2 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-1 cpp-4.8_4.8.2-10 dash_0.5.7-3 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.5 dpkg-dev_1.17.5 e2fslibs_1.42.8-1 e2fsprogs_1.42.8-1 eatmydata_26-2 fakeroot_1. [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -310,35 +371,55 @@ Package versions: apt_0.9.7.6 base-files_6.12 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-armhf-sbuild
+SCHROOT_CHROOT_NAME=sid-armhf-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-armhf-sbuild-26bdb268-c4f6-45d8-a7ec-a288afbc88dc
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture armhf
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -350,16 +431,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/installation.rst
+Restoring docs/content/related-tools.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -372,41 +458,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -458,48 +588,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -511,6 +655,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -533,13 +679,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -549,31 +699,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -581,22 +744,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -608,20 +797,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -633,7 +828,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -654,7 +849,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -738,6 +933,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -752,7 +949,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog usr/share/doc/bedtools/changelog.Debian
 	gzip -9nf usr/share/doc/bedtools/changelog usr/share/doc/bedtools/changelog.Debian
-	cd '/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -768,7 +965,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -776,10 +973,10 @@ dh_installdeb -pbedtools
 dh_perl -pbedtools 
 dh_shlibdeps -pbedtools    
 	dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
-dpkg-shlibdeps: warning: debian/bedtools/usr/bin/bedtools contains an unresolvable reference to symbol __aeabi_unwind_cpp_pr1 at GCC_3.5: it's probably a plugin
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -788,65 +985,85 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_armhf.deb'.
- dpkg-genchanges -B -marmhf Build Daemon (hummel) <buildd_armhf-hummel at buildd.debian.org> >../bedtools_2.17.0-1_armhf.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_armhf.deb'.
+ dpkg-genchanges -B -marmhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org> >../bedtools_2.19.0-1_armhf.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
 dpkg-buildpackage: binary only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1157
+Build finished at 20140216-0852
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_armhf.changes:
+────────────────────────────────
 
-bedtools_2.17.0-1_armhf.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: armhf
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: armhf Build Daemon (hummel) <buildd_armhf-hummel at buildd.debian.org>
+Maintainer: armhf Build Daemon (hasse) <buildd_armhf-hasse at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 16d01a70af9713f8071176b2c71a43d558e355ca 400610 bedtools_2.17.0-1_armhf.deb
+ 6b3a426b4d603fca80ec59bbd8b73566397c4593 485546 bedtools_2.19.0-1_armhf.deb
 Checksums-Sha256: 
- e45b2cd9994a2c1b02e13a5f91a656fdfbaa948b1dbb7dabb19c2471090f39e5 400610 bedtools_2.17.0-1_armhf.deb
+ 92867239238f21678e69f8e325613cdd3a3fbbfb4bd96e89ce01f03d57a2a83d 485546 bedtools_2.19.0-1_armhf.deb
 Files: 
- 261f24cfbd23e451266850895c273031 400610 science optional bedtools_2.17.0-1_armhf.deb
+ b83c93620f0da3bb5a49f34a0eccdd71 485546 science optional bedtools_2.19.0-1_armhf.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_armhf.deb
+bedtools_2.19.0-1_armhf.deb
 ───────────────────────────
 
  new debian package, version 2.0.
- size 400610 bytes: control archive=4117 bytes.
+ size 485546 bytes: control archive=5753 bytes.
       32 bytes,     1 lines      conffiles            
-     837 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     834 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: armhf
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1116
- Depends: libc6 (>= 2.13-28), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
+ Installed-Size: 1764
+ Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
  Priority: optional
@@ -858,204 +1075,270 @@ bedtools_2.17.0-1_armhf.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./usr/bin/
--rwxr-xr-x root/root        38 2012-11-04 11:56 ./usr/bin/mergeBed
--rwxr-xr-x root/root        42 2012-11-04 11:56 ./usr/bin/intersectBed
--rwxr-xr-x root/root        41 2012-11-04 11:56 ./usr/bin/subtractBed
--rwxr-xr-x root/root        42 2012-11-04 11:56 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        42 2012-11-04 11:56 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root        40 2012-11-04 11:56 ./usr/bin/getOverlap
--rwxr-xr-x root/root        43 2012-11-04 11:56 ./usr/bin/bamToFastq
--rwxr-xr-x root/root        41 2012-11-04 11:56 ./usr/bin/bedToBam
--rwxr-xr-x root/root        41 2012-11-04 11:56 ./usr/bin/bamToBed
--rwxr-xr-x root/root        40 2012-11-04 11:56 ./usr/bin/clusterBed
--rwxr-xr-x root/root        44 2012-11-04 11:56 ./usr/bin/windowMaker
--rwxr-xr-x root/root        36 2012-11-04 11:56 ./usr/bin/tagBam
--rwxr-xr-x root/root        38 2012-11-04 11:56 ./usr/bin/linksBed
--rwxr-xr-x root/root        41 2012-11-04 11:56 ./usr/bin/annotateBed
--rwxr-xr-x root/root        40 2012-11-04 11:56 ./usr/bin/shuffleBed
--rwxr-xr-x root/root        41 2012-11-04 11:56 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root        39 2012-11-04 11:56 ./usr/bin/expandCols
--rwxr-xr-x root/root        38 2012-11-04 11:56 ./usr/bin/flankBed
--rwxr-xr-x root/root        37 2012-11-04 11:56 ./usr/bin/slopBed
--rwxr-xr-x root/root        36 2012-11-04 11:56 ./usr/bin/bedToIgv
--rwxr-xr-x root/root        41 2012-11-04 11:56 ./usr/bin/multiBamCov
--rwxr-xr-x root/root        40 2012-11-04 11:56 ./usr/bin/closestBed
--rwxr-xr-x root/root    936192 2012-11-04 11:57 ./usr/bin/bedtools
--rwxr-xr-x root/root        42 2012-11-04 11:56 ./usr/bin/pairToBed
--rwxr-xr-x root/root        41 2012-11-04 11:56 ./usr/bin/coverageBed
--rwxr-xr-x root/root        43 2012-11-04 11:56 ./usr/bin/pairToPair
--rwxr-xr-x root/root        39 2012-11-04 11:56 ./usr/bin/randomBed
--rwxr-xr-x root/root        36 2012-11-04 11:56 ./usr/bin/nucBed
--rwxr-xr-x root/root        43 2012-11-04 11:56 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root        43 2012-11-04 11:56 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        39 2012-11-04 11:56 ./usr/bin/windowBed
--rwxr-xr-x root/root        43 2012-11-04 11:56 ./usr/bin/complementBed
--rwxr-xr-x root/root        37 2012-11-04 11:56 ./usr/bin/sortBed
--rwxr-xr-x root/root        36 2012-11-04 11:56 ./usr/bin/mapBed
--rwxr-xr-x root/root        42 2012-11-04 11:56 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root        44 2012-11-04 11:56 ./usr/bin/bed12ToBed6
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./usr/share/doc/bedtools/
--rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
--rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
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--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./etc/
-drwxr-xr-x root/root         0 2012-11-04 11:57 ./etc/bash_completion.d/
--rw-r--r-- root/root       638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
+drwxr-xr-x root/root         0 2014-02-16 08:52 ./
+drwxr-xr-x root/root         0 2014-02-16 08:52 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 08:52 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
+drwxr-xr-x root/root         0 2014-02-16 08:51 ./usr/
+drwxr-xr-x root/root         0 2014-02-16 08:51 ./usr/share/
+drwxr-xr-x root/root         0 2014-02-16 08:51 ./usr/share/bedtools/
+drwxr-xr-x root/root         0 2014-02-16 08:52 ./usr/share/bedtools/test/
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/groupBy/
+-rw-r--r-- root/root       860 2014-02-09 02:29 ./usr/share/bedtools/test/groupBy/test-groupby.sh
+-rw-r--r-- root/root       250 2014-02-09 02:29 ./usr/share/bedtools/test/groupBy/values3.header.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/
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+-rwxr-xr-x root/root        37 2014-02-16 08:51 ./usr/bin/slopBed
+-rwxr-xr-x root/root        36 2014-02-16 08:51 ./usr/bin/nucBed
+-rwxr-xr-x root/root        40 2014-02-16 08:51 ./usr/bin/getOverlap
+-rwxr-xr-x root/root        41 2014-02-16 08:51 ./usr/bin/subtractBed
+-rwxr-xr-x root/root        38 2014-02-16 08:51 ./usr/bin/mergeBed
+-rwxr-xr-x root/root        42 2014-02-16 08:51 ./usr/bin/genomeCoverageBed
+-rwxr-xr-x root/root        38 2014-02-16 08:51 ./usr/bin/flankBed
+-rwxr-xr-x root/root        41 2014-02-16 08:51 ./usr/bin/multiBamCov
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-armhf-sbuild-749f582d-3064-46da-beab-12826efb95ab/build/buildd-bedtools_2.17.0-1-armhf-sVT5Vc
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: armhf
-Build-Space: 78308
-Build-Time: 1510
+Build Architecture: armhf
+Build-Space: 102352
+Build-Time: 2134
 Distribution: sid
-Install-Time: 147
-Job: bedtools_2.17.0-1
+Host Architecture: armhf
+Install-Time: 278
+Job: bedtools_2.19.0-1
+Machine Architecture: armhf
 Package: bedtools
-Package-Time: 1781
-Source-Version: 2.17.0-1
-Space: 78308
+Package-Time: 2544
+Source-Version: 2.19.0-1
+Space: 102352
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1157
-Build needed 00:29:41, 78308k disc space
-Signature with key '630B2C7A' requested:
+Finished at 20140216-0852
+Build needed 00:42:24, 102352k disc space
+Signature with key '12E2A4D4' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_armhf.changes 12E2A4D4
 
+Successfully signed changes file
diff --git a/hurd-i386.log b/hurd-i386.log
index 127441d..6d47a45 100644
--- a/hurd-i386.log
+++ b/hurd-i386.log
@@ -1,48 +1,60 @@
-From buildd at ironforge.sceen.net Sun Nov 04 13:55:21 2012
+From buildd at ironforge.sceen.net Sun Feb 16 09:57:15 2014
 Return-path: <buildd at ironforge.sceen.net>
-Received: from ironforge.sceen.net ([46.105.42.111])
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at ironforge.sceen.net>)
-	id 1TV0fY-0005vN-S6
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 13:55:21 +0000
-Received: from buildd by ironforge.sceen.net with local (Exim 4.77)
-	(envelope-from <buildd at ironforge.sceen.net>)
-	id 1TV0ff-0004BY-6S; Sun, 04 Nov 2012 14:55:27 +0100
+Received: from ironforge.sceen.net ([2001:41d0:8:8dd8::111])
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at ironforge.sceen.net>)
+ id 1WEyTL-0003Ej-Cy
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 09:57:15 +0000
+Received: from buildd by ironforge.sceen.net with local (Exim 4.80)
+ (envelope-from <buildd at ironforge.sceen.net>)
+ id 1WEyTJ-0001vI-68; Sun, 16 Feb 2014 10:57:13 +0100
 Content-Transfer-Encoding: binary
 MIME-Version: 1.0
-X-Mailer: MIME::Lite 3.027 (F2.82; B3.13; Q3.13)
-Date: Sun, 4 Nov 2012 14:55:27 +0100
+X-Mailer: MIME::Lite 3.027 (F2.84; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 10:57:13 +0100
 From: Build Daemon <buildd at ironforge.sceen.net>
-To: samuel.thibault at ens-lyon.org,mbanck at gmx.net,logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on hurd-i386 (dist=sid)
-Message-Id: <E1TV0ff-0004BY-6S at ironforge.sceen.net>
+To: samuel.thibault at ens-lyon.org, mbanck at debian.org,
+ debian-hurd-build-logs at lists.alioth.debian.org, logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on hurd-i386 (dist=sid)
+Message-Id: <E1WEyTJ-0001vI-68 at ironforge.sceen.net>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ironforge.sceen.net
+sbuild (Debian sbuild) 0.64.0 (17 May 2013) on ironforge.sceen.net
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (hurd-i386)                              04 Nov 2012 14:51 ║
+║ bedtools 2.19.0-1 (hurd-i386)                              16 Feb 2014 10:51 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: hurd-i386
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: hurd-i386
+Host Architecture: hurd-i386
+Build Architecture: hurd-i386
+
+I: NOTICE: Log filtering will replace 'build/bedtools-b_gPne/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-b_gPne' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'home/buildd/build/chroot-sid' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
 Ign file: ./ InRelease
 Ign file: ./ Release.gpg
 Ign file: ./ Release
 Ign file: ./ Translation-en
-Hit http://ftp.fr.debian.org sid InRelease
-Hit http://ftp.fr.debian.org sid/main Sources/DiffIndex
+Get:1 http://ftp.fr.debian.org sid InRelease [199 kB]
 Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org  InRelease
+Get:2 http://incoming.debian.org buildd-sid InRelease [96.4 kB]
+Get:3 http://ftp.fr.debian.org sid/main Sources/DiffIndex [7876 B]
 Hit http://ftp.fr.debian.org sid/contrib Sources/DiffIndex
 Hit http://ftp.fr.debian.org sid/non-free Sources/DiffIndex
-Hit http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex
+Get:4 http://ftp.fr.debian.org sid/main hurd-i386 Packages/DiffIndex [7876 B]
 Hit http://ftp.fr.debian.org sid/contrib hurd-i386 Packages/DiffIndex
 Hit http://ftp.fr.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://ftp.fr.debian.org sid/main Translation-en/DiffIndex
-Get:1 http://incoming.debian.org  Release.gpg [836 B]
+Get:5 http://ftp.fr.debian.org sid/main Translation-en/DiffIndex [7876 B]
 Hit http://incoming.debian.org sid/main Sources/DiffIndex
 Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
 Hit http://incoming.debian.org sid/non-free Sources/DiffIndex
@@ -50,15 +62,29 @@ Hit http://incoming.debian.org sid/main hurd-i386 Packages/DiffIndex
 Hit http://incoming.debian.org sid/contrib hurd-i386 Packages/DiffIndex
 Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
 Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
-Get:2 http://incoming.debian.org  Release [1141 B]
-Ign http://incoming.debian.org sid/main 2012-11-04-0210.01.pdiff
-Ign http://incoming.debian.org sid/main hurd-i386 2012-11-04-0210.01.pdiff
-Get:3 http://incoming.debian.org  Sources [19.3 kB]
-Get:4 http://incoming.debian.org  Packages [180 kB]
-Hit http://incoming.debian.org sid/main
-Hit http://incoming.debian.org sid/main hurd-i386
-Ign http://incoming.debian.org  Translation-en
-Fetched 201 kB in 9s (22.0 kB/s)
+Get:6 http://ftp.fr.debian.org sid/main 2014-02-16-0845.08.pdiff [5529 B]
+Get:7 http://ftp.fr.debian.org sid/main hurd-i386 2014-02-16-0845.08.pdiff [808 B]
+Get:8 http://ftp.fr.debian.org sid/main 2014-02-16-0845.08.pdiff [5529 B]
+Falling back to normal index file aquire
+Ign http://ftp.fr.debian.org sid/main 2014-02-16-0845.08.pdiff
+Get:9 http://ftp.fr.debian.org sid/main hurd-i386 2014-02-16-0845.08.pdiff [808 B]
+Falling back to normal index file aquire
+Ign http://ftp.fr.debian.org sid/main hurd-i386 2014-02-16-0845.08.pdiff
+Get:10 http://ftp.fr.debian.org sid/main 2014-02-16-0845.08.pdiff [389 B]
+Get:11 http://ftp.fr.debian.org sid/main 2014-02-16-0845.08.pdiff [389 B]
+Falling back to normal index file aquire
+Ign http://ftp.fr.debian.org sid/main 2014-02-16-0845.08.pdiff
+Get:12 http://ftp.fr.debian.org sid/main [4489 kB]
+Get:13 http://incoming.debian.org buildd-sid/main Sources [71.3 kB]
+Get:14 http://incoming.debian.org buildd-sid/contrib Sources [1336 B]
+Get:15 http://incoming.debian.org buildd-sid/non-free Sources [32 B]
+Get:16 http://incoming.debian.org buildd-sid/main hurd-i386 Packages [41.3 kB]
+Get:17 http://incoming.debian.org buildd-sid/contrib hurd-i386 Packages [1076 B]
+Get:18 http://incoming.debian.org buildd-sid/contrib Translation-en [1098 B]
+Get:19 http://incoming.debian.org buildd-sid/main Translation-en [53.3 kB]
+Get:20 http://ftp.fr.debian.org sid/main [6999 kB]
+Get:21 http://ftp.fr.debian.org sid/main hurd-i386 [5703 kB]
+Fetched 17.7 MB in 26s (659 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -78,220 +104,202 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 4s (244 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://ftp.fr.debian.org/debian/ sid/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://ftp.fr.debian.org/debian/ sid/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://ftp.fr.debian.org/debian/ sid/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 1s (3328 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-YW2T5Q/apt_archive/sbuild-build-depends-core-dummy.deb'.
+gpg: WARNING: using insecure memory!
+gpg: please see http://www.gnupg.org/documentation/faqs.html for more information
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following packages were automatically installed and are no longer required:
-  adduser groff-base libboost-iostreams1.46.1 libboost-iostreams1.49.0
-  libcwidget3 libpopt0 libsigc++-2.0-0c2a libssl1.0.0 libsysfs2 libxapian22
-  man-db
+  cron libboost-iostreams1.54.0 libbsd0 libept1.4.12 libxapian22
+  netcat-openbsd
 Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+0 upgraded, 1 newly installed, 0 to remove and 39 not upgraded.
+Need to get 0 B/766 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 16672 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, libc-bin, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, libc-bin, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc0.3-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-OM7gHF/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+gpg: WARNING: using insecure memory!
+gpg: please see http://www.gnupg.org/documentation/faqs.html for more information
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
-  adduser groff-base libboost-iostreams1.46.1 libboost-iostreams1.49.0
-  libcwidget3 libpopt0 libsigc++-2.0-0c2a libssl1.0.0 libsysfs2 libxapian22
-  man-db
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, hurd, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc0.3-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), hurd-dev, cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3+b1)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6+b1)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4+b1)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11+b1)
-hurd: already installed (20120710-3)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-14)
-sed: already installed (4.2.1-10)
-sysvinit-utils: already installed (2.88dsf-22)
-sysvinit: already installed (2.88dsf-22)
-tar: already installed (1.26-4+b1)
-bsdutils: already installed (1:2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc0.3-dev: already installed (2.13-35)
-gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.1-1 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2+b1)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-hurd-dev: already installed (20120710-3)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following packages were automatically installed and are no longer required:
-  adduser libboost-iostreams1.46.1 libboost-iostreams1.49.0 libcwidget3
-  libpopt0 libsigc++-2.0-0c2a libsysfs2 libxapian22
+  cron libboost-iostreams1.54.0 libbsd0 libept1.4.12 libxapian22
+  netcat-openbsd
 Use 'apt-get autoremove' to remove them.
 The following extra packages will be installed:
-  diffstat file gettext gettext-base html2text intltool-debian libasprintf0c2
-  libcroco3 libexpat1 libffi5 libgettextpo0 libglib2.0-0 libmagic1
-  libsqlite3-0 libunistring0 libxml2 mime-support po-debconf python-minimal
-  python2.7 python2.7-minimal
+  cdbs debhelper diffstat file gettext gettext-base intltool-debian
+  libasprintf0c2 libcroco3 libexpat1 libmagic1 libpython-stdlib
+  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libunistring0
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt zlib1g-dev
 Suggested packages:
   devscripts dh-make gettext-doc libmail-box-perl python-doc python-tk
   python2.7-doc binfmt-support procmail graphviz default-mta
   mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libmail-sendmail-perl less
 The following NEW packages will be installed:
-  cdbs debhelper diffstat file gettext gettext-base html2text intltool-debian
-  libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0 libglib2.0-0
-  libmagic1 libsqlite3-0 libunistring0 libxml2 mime-support po-debconf python
-  python-minimal python2.7 python2.7-minimal quilt zlib1g-dev
-0 upgraded, 26 newly installed, 0 to remove and 36 not upgraded.
-Need to get 0 B/12.6 MB of archives.
-After this operation, 37.2 MB of additional disk space will be used.
-WARNING: The following packages cannot be authenticated!
-  libasprintf0c2 libmagic1 libsqlite3-0 libxml2 libffi5 libglib2.0-0 libcroco3
-  libexpat1 libunistring0 libgettextpo0 file gettext-base mime-support
-  python2.7-minimal python2.7 python-minimal python cdbs html2text gettext
-  intltool-debian po-debconf debhelper diffstat quilt zlib1g-dev
-Authentication warning overridden.
+  cdbs debhelper diffstat file gettext gettext-base intltool-debian
+  libasprintf0c2 libcroco3 libexpat1 libmagic1 libpython-stdlib
+  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libunistring0
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+0 upgraded, 25 newly installed, 0 to remove and 39 not upgraded.
+Need to get 0 B/7923 kB of archives.
+After this operation, 31.6 MB of additional disk space will be used.
 Selecting previously unselected package libasprintf0c2:hurd-i386.
-(Reading database ... 15297 files and directories currently installed.)
-Unpacking libasprintf0c2:hurd-i386 (from .../libasprintf0c2_0.18.1.1-9_hurd-i386.deb) ...
+(Reading database ... 16672 files and directories currently installed.)
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_hurd-i386.deb ...
+Unpacking libasprintf0c2:hurd-i386 (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:hurd-i386.
-Unpacking libmagic1:hurd-i386 (from .../libmagic1_5.11-2_hurd-i386.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_hurd-i386.deb ...
+Unpacking libmagic1:hurd-i386 (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:hurd-i386.
-Unpacking libsqlite3-0:hurd-i386 (from .../libsqlite3-0_3.7.14.1-1_hurd-i386.deb) ...
-Selecting previously unselected package libxml2:hurd-i386.
-Unpacking libxml2:hurd-i386 (from .../libxml2_2.8.0+dfsg1-6_hurd-i386.deb) ...
-Selecting previously unselected package libffi5:hurd-i386.
-Unpacking libffi5:hurd-i386 (from .../libffi5_3.0.10-3+b1_hurd-i386.deb) ...
-Selecting previously unselected package libglib2.0-0:hurd-i386.
-Unpacking libglib2.0-0:hurd-i386 (from .../libglib2.0-0_2.33.12+really2.32.4-3_hurd-i386.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_hurd-i386.deb ...
+Unpacking libsqlite3-0:hurd-i386 (3.8.3.1-1) ...
 Selecting previously unselected package libcroco3:hurd-i386.
-Unpacking libcroco3:hurd-i386 (from .../libcroco3_0.6.6-1_hurd-i386.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_hurd-i386.deb ...
+Unpacking libcroco3:hurd-i386 (0.6.8-2) ...
 Selecting previously unselected package libexpat1:hurd-i386.
-Unpacking libexpat1:hurd-i386 (from .../libexpat1_2.1.0-1+b1_hurd-i386.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_hurd-i386.deb ...
+Unpacking libexpat1:hurd-i386 (2.1.0-4) ...
 Selecting previously unselected package libunistring0:hurd-i386.
-Unpacking libunistring0:hurd-i386 (from .../libunistring0_0.9.3-5+b1_hurd-i386.deb) ...
-Selecting previously unselected package libgettextpo0:hurd-i386.
-Unpacking libgettextpo0:hurd-i386 (from .../libgettextpo0_0.18.1.1-9_hurd-i386.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5+b1_hurd-i386.deb ...
+Unpacking libunistring0:hurd-i386 (0.9.3-5+b1) ...
 Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-2_hurd-i386.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_hurd-i386.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_hurd-i386.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_hurd-i386.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-minimal:hurd-i386.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_hurd-i386.deb ...
+Unpacking libpython2.7-minimal:hurd-i386 (2.7.6-5) ...
 Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_hurd-i386.deb) ...
+Preparing to unpack .../python2.7-minimal_2.7.6-5_hurd-i386.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
+Selecting previously unselected package libpython2.7-stdlib:hurd-i386.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_hurd-i386.deb ...
+Unpacking libpython2.7-stdlib:hurd-i386 (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_hurd-i386.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_hurd-i386.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_hurd-i386.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:hurd-i386.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_hurd-i386.deb ...
+Unpacking libpython-stdlib:hurd-i386 (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_hurd-i386.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15+b2_hurd-i386.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_hurd-i386.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_hurd-i386.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
+Not building database; man-db/auto-update is not 'true'.
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_hurd-i386.deb) ...
+Preparing to unpack .../diffstat_1.58-1_hurd-i386.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:hurd-i386.
-Unpacking zlib1g-dev:hurd-i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_hurd-i386.deb) ...
-Processing triggers for man-db ...
-Setting up libasprintf0c2:hurd-i386 (0.18.1.1-9) ...
-Setting up libmagic1:hurd-i386 (5.11-2) ...
-Setting up libsqlite3-0:hurd-i386 (3.7.14.1-1) ...
-Setting up libxml2:hurd-i386 (2.8.0+dfsg1-6) ...
-Setting up libffi5:hurd-i386 (3.0.10-3+b1) ...
-Setting up libglib2.0-0:hurd-i386 (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:hurd-i386 (0.6.6-1) ...
-Setting up libexpat1:hurd-i386 (2.1.0-1+b1) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_hurd-i386.deb ...
+Unpacking zlib1g-dev:hurd-i386 (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for man-db (2.6.5-2) ...
+Setting up libasprintf0c2:hurd-i386 (0.18.3.2-1) ...
+Setting up libmagic1:hurd-i386 (1:5.14-2) ...
+Setting up libsqlite3-0:hurd-i386 (3.8.3.1-1) ...
+Setting up libcroco3:hurd-i386 (0.6.8-2) ...
+Setting up libexpat1:hurd-i386 (2.1.0-4) ...
 Setting up libunistring0:hurd-i386 (0.9.3-5+b1) ...
-Setting up libgettextpo0:hurd-i386 (0.18.1.1-9) ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15+b2) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-minimal:hurd-i386 (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up libpython2.7-stdlib:hurd-i386 (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:hurd-i386 (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:hurd-i386 (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages were automatically installed and are no longer required:
-  adduser libboost-iostreams1.46.1 libboost-iostreams1.49.0 libcwidget3
-  libpopt0 libsigc++-2.0-0c2a libsysfs2 libxapian22
-Use 'apt-get autoremove' to remove them.
-0 upgraded, 0 newly installed, 0 to remove and 36 not upgraded.
-Checking correctness of dependencies...
-Kernel: GNU 0.3 hurd-i386 (i686-AT386)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.7_4.7.2-4 gcc-4.7_4.7.2-4 gnumach-dev_2:1.3.99.dfsg.git20120923-1 hurd-dev_20120710-3 libc0.3-dev_2.13-35 libstdc++6_4.7.2-4 libstdc++6-4.7-dev_4.7.2-4
-Package versions: adduser_3.113+nmu3 apt_0.9.7.4 apt-utils_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 bash-completion_1:2.0-1 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpio_2.11-8 cpp_4:4.7.2-1 cpp-4.7_4.7.2-4 dash_0.5.7-3+b1 debconf_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debian-ports-archive-keyring_2012.01.08 debianutils_4.3.3 diffstat_1.55-3 diffutils_ [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:hurd-i386 (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: GNU 0.5 hurd-i386 (i686-AT386)
+Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.5 g++-4.8_4.8.2-15 gcc-4.8_4.8.2-15 gnumach-dev_2:1.4-1 hurd-dev_1:0.5.git20140203-1 libc0.3-dev_2.17-97 libstdc++-4.8-dev_4.8.2-15 libstdc++6_4.8.2-15 libstdc++6-4.7-dev_4.7.3-10
+Package versions: adduser_3.113+nmu3 apt_0.9.14.1 apt-utils_0.9.14.1 base-files_7.2 base-passwd_3.5.28 bash_4.2+dfsg-1 bash-completion_1:2.1-2 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.13-3.2 cpio_2.11+dfsg-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-15 cron_3.0pl1-124 dash_0.5.7-3+b1 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debian-ports-archive-keyring_2012.12.30 debianutils_4.4 diffs [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -302,34 +310,54 @@ Unpack source
 ─────────────
 
 gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+HOME=/home/buildd
+LOGNAME=buildd
+OLDPWD=/
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
+PWD=/«PKGBUILDDIR»
+SHELL=/bin/sh
+SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env'
+SUDO_GID=1002
+SUDO_UID=1002
+SUDO_USER=buildd
+TERM=rxvt-unicode
+USER=buildd
+USERNAME=root
 
 dpkg-buildpackage
 ─────────────────
 
+ dpkg-source --before-build bedtools-2.19.0
+ /usr/bin/fakeroot debian/rules clean
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
 dpkg-buildpackage: host architecture hurd-i386
- /usr/bin/fakeroot debian/rules clean
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -341,63 +369,112 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/installation.rst
+Restoring docs/content/related-tools.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
 No patches applied
 rm -rf ./.pc
-rm -f debian/stamp-patch*
  debian/rules build-arch
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
+rm -f debian/stamp-patch*
 test -x debian/rules
 mkdir -p "."
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -424,6 +501,16 @@ g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-s
  * compiling BamToolsIndex_p.cpp
  * compiling BamDeviceFactory_p.cpp
  * compiling BamFile_p.cpp
+Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
  * compiling BamFtp_p.cpp
  * compiling BamHttp_p.cpp
  * compiling BamPipe_p.cpp
@@ -449,58 +536,64 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
-- Building in src/annotateBed
-  * compiling annotateMain.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
+bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
+- Building in src/annotateBed
+  * compiling annotateMain.cpp
   * compiling annotateBed.cpp
 - Building in src/bamToBed
-bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
   * compiling bamToBed.cpp
-- Building in src/bamToFastq
-  * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
-  * compiling bamToFastq.cpp
-- Building in src/bedToBam
-  * compiling bedToBam.cpp
+     bool haveFastq2    = false;
+          ^
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
-- Building in src/bedpeToBam
+     bool haveMapQual     = false;
+          ^
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
+- Building in src/bamToFastq
+  * compiling bamToFastqMain.cpp
+  * compiling bamToFastq.cpp
+- Building in src/bedToBam
+  * compiling bedToBam.cpp
+- Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
+clusterMain.cpp: In function 'int cluster_main(int, char**)':
+clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
 - Building in src/bed12ToBed6
   * compiling bed12ToBed6.cpp
 - Building in src/closestBed
   * compiling closestMain.cpp
   * compiling closestBed.cpp
 - Building in src/clusterBed
-clusterMain.cpp: In function 'int cluster_main(int, char**)':
-clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
   * compiling clusterMain.cpp
   * compiling clusterBed.cpp
 - Building in src/complementBed
@@ -520,17 +613,21 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
 - Building in src/genomeCoverageBed
   * compiling genomeCoverageMain.cpp
   * compiling genomeCoverageBed.cpp
-- Building in src/getOverlap
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
-  * compiling getOverlap.cpp
-- Building in src/groupBy
+     bool haveColumns = false;
+          ^
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
+     bool haveOps           = true;
+          ^
+- Building in src/getOverlap
+  * compiling getOverlap.cpp
+- Building in src/groupBy
   * compiling groupBy.cpp
-- Building in src/intersectBed
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -540,54 +637,93 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
-  * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
-- Building in src/mergeBed
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
-  * compiling mergeMain.cpp
-  * compiling mergeBed.cpp
-- Building in src/multiBamCov
-  * compiling multiBamCovMain.cpp
+     bool haveMaxDistance = false;
+          ^
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
-  * compiling multiBamCov.cpp
-- Building in src/multiIntersectBed
-  * compiling multiIntersectBedMain.cpp
+     bool haveFraction       = false;
+          ^
+- Building in src/mapFile
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
+  * compiling mapMain.cpp
+  * compiling mapFile.cpp
+- Building in src/mergeBed
+  * compiling mergeMain.cpp
+  * compiling mergeBed.cpp
+- Building in src/multiBamCov
+  * compiling multiBamCovMain.cpp
+  * compiling multiBamCov.cpp
+- Building in src/multiIntersectBed
+  * compiling multiIntersectBedMain.cpp
   * compiling multiIntersectBed.cpp
-- Building in src/nucBed
-  * compiling nucBedMain.cpp
-  * compiling nucBed.cpp
-- Building in src/pairToBed
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
-  * compiling pairToBedMain.cpp
+     bool haveFraction       = false;
+          ^
+- Building in src/nekSandbox1
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
+  * compiling nekSandboxMain.cpp
+- Building in src/nucBed
+  * compiling nucBedMain.cpp
+  * compiling nucBed.cpp
+- Building in src/pairToBed
+  * compiling pairToBedMain.cpp
   * compiling pairToBed.cpp
-- Building in src/pairToPair
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
-  * compiling pairToPairMain.cpp
+     bool haveFraction = false;
+          ^
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
+- Building in src/pairToPair
+  * compiling pairToPairMain.cpp
   * compiling pairToPair.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -597,21 +733,27 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
 - Building in src/sortBed
   * compiling sortMain.cpp
   * compiling sortBed.cpp
+tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
+tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
+unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
+unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
+unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
+unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
 - Building in src/subtractBed
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractMain.cpp
   * compiling subtractBed.cpp
 - Building in src/tagBam
-tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
-tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling tagBamMain.cpp
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
-unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
-unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
   * compiling unionBedGraphsMain.cpp
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
@@ -621,12 +763,12 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
   * compiling windowMakerMain.cpp
   * compiling windowMaker.cpp
 - Building main bedtools binary.
+ /usr/bin/fakeroot debian/rules binary-arch
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
- /usr/bin/fakeroot debian/rules binary-arch
 DEB_MAKE_CHECK_TARGET unset, not running checks
 test -x debian/rules
 dh_testroot
@@ -645,7 +787,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -729,6 +871,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -743,7 +887,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -759,7 +903,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -768,6 +912,11 @@ dh_perl -pbedtools
 dh_shlibdeps -pbedtools    
 	dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
 dh_gencontrol -pbedtools  
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
+ dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-ironforge at buildd.debian.org> >../bedtools_2.19.0-1_hurd-i386.changes
+dpkg-genchanges: arch-specific upload - not including arch-independent packages
+dpkg-genchanges: binary-only upload - not including any source code
+ dpkg-source --after-build bedtools-2.19.0
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
 	chmod 644 debian/bedtools/DEBIAN/control
@@ -778,64 +927,80 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_hurd-i386.deb'.
- dpkg-genchanges -B -mDebian GNU/Hurd Build Daemon <buildd_hurd-i386-ironforge at buildd.debian.org> >../bedtools_2.17.0-1_hurd-i386.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_hurd-i386.deb'.
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
 dpkg-buildpackage: binary only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1455
+Build finished at 20140216-1057
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_hurd-i386.changes:
+────────────────────────────────────
 
-bedtools_2.17.0-1_hurd-i386.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: hurd-i386
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
 Maintainer: Debian GNU/Hurd Build Daemon <buildd_hurd-i386-ironforge at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 34885c33aed021ef2549de98f66d6267d8a581ef 448554 bedtools_2.17.0-1_hurd-i386.deb
+ 3d7cda558d48c7c8385eecc6b2d1f9ba938a8b51 556116 bedtools_2.19.0-1_hurd-i386.deb
 Checksums-Sha256: 
- 311dabecb708560a550150907f580321f866b6e29a467f219b9642e40c89f466 448554 bedtools_2.17.0-1_hurd-i386.deb
+ b7da29b4586aeeef4468548780b2167d8a5b6e3ba3e197c5f27a76445bbdb87e 556116 bedtools_2.19.0-1_hurd-i386.deb
 Files: 
- a39a5b4956d88fd0c5693c25d01f03f5 448554 science optional bedtools_2.17.0-1_hurd-i386.deb
+ bc08d945410f8cd62cbf20491ef341aa 556116 science optional bedtools_2.19.0-1_hurd-i386.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_hurd-i386.deb
+bedtools_2.19.0-1_hurd-i386.deb
 ───────────────────────────────
 
  new debian package, version 2.0.
- size 448554 bytes: control archive= 4110 bytes.
+ size 556116 bytes: control archive=5752 bytes.
       32 bytes,     1 lines      conffiles            
-     837 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     838 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: hurd-i386
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1528
+ Installed-Size: 2340
  Depends: libc0.3 (>= 2.4), libgcc1 (>= 4.2.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
@@ -848,267 +1013,334 @@ bedtools_2.17.0-1_hurd-i386.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 14:54 ./
-drwxr-xr-x root/root         0 2012-11-04 14:54 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 14:54 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 14:54 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 14:54 ./usr/share/doc/bedtools/
--rw-r--r-- root/root      1505 2012-11-03 18:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root      5395 2012-11-04 06:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root     11640 2012-11-03 18:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      1089 2012-11-04 09:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root         0 2012-11-04 14:54 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 14:51 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       856 2012-11-03 18:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root      1972 2012-11-03 18:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root       565 2012-11-03 18:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root       585 2012-11-03 18:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
-drwxr-xr-x root/root         0 2012-11-04 14:54 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 14:51 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       162 2012-11-03 18:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root      3304 2012-11-03 18:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       176 2012-11-03 18:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
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 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /home/buildd/build/chroot-sid/build/buildd-bedtools_2.17.0-1-hurd-i386-z_Ffqp
+Purging /«BUILDDIR»
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-Removing python2.7-minimal ...
-Purging configuration files for python2.7-minimal ...
-Removing zlib1g-dev:hurd-i386 ...
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+Removing libpython2.7-stdlib:hurd-i386 (2.7.6-5) ...
+Removing libexpat1:hurd-i386 (2.1.0-4) ...
+Purging configuration files for libexpat1:hurd-i386 (2.1.0-4) ...
+Removing libmagic1:hurd-i386 (1:5.14-2) ...
+Purging configuration files for libmagic1:hurd-i386 (1:5.14-2) ...
+Removing python-minimal (2.7.5-5) ...
+Removing python2.7-minimal (2.7.6-5) ...
+Purging configuration files for python2.7-minimal (2.7.6-5) ...
+Removing libpython2.7-minimal:hurd-i386 (2.7.6-5) ...
+Purging configuration files for libpython2.7-minimal:hurd-i386 (2.7.6-5) ...
+Removing libsqlite3-0:hurd-i386 (3.8.3.1-1) ...
+Purging configuration files for libsqlite3-0:hurd-i386 (3.8.3.1-1) ...
+Removing libunistring0:hurd-i386 (0.9.3-5+b1) ...
+Purging configuration files for libunistring0:hurd-i386 (0.9.3-5+b1) ...
+Removing mime-support (3.54) ...
+Purging configuration files for mime-support (3.54) ...
+Removing sbuild-build-depends-core-dummy (0.invalid.0) ...
+Removing zlib1g-dev:hurd-i386 (1:1.2.8.dfsg-1) ...
+Processing triggers for man-db (2.6.5-2) ...
+Processing triggers for libc-bin (2.17-97) ...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: hurd-i386
-Build-Space: 74768
-Build-Time: 215
+Build Architecture: hurd-i386
+Build-Space: 102752
+Build-Time: 243
 Distribution: sid
-Install-Time: 20
-Job: bedtools_2.17.0-1
+Host Architecture: hurd-i386
+Install-Time: 29
+Job: bedtools_2.19.0-1
+Machine Architecture: hurd-i386
 Package: bedtools
-Package-Time: 255
-Source-Version: 2.17.0-1
-Space: 74768
+Package-Time: 309
+Source-Version: 2.19.0-1
+Space: 102752
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1455
-Build needed 00:04:15, 74768k disc space
+Finished at 20140216-1057
+Build needed 00:05:09, 102752k disc space
diff --git a/i386.log b/i386.log
index 4e5b226..dab2088 100644
--- a/i386.log
+++ b/i386.log
@@ -1,64 +1,74 @@
-From buildd at murphy.debian.org Sun Nov 04 11:37:39 2012
-Return-path: <buildd at murphy.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
-	id 1TUyWJ-0001bA-3D
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:37:39 +0000
-Received: from murphy.debian.org ([70.103.162.31])
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-	CN=murphy.debian.org, EMAIL=hostmaster at murphy.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at murphy.debian.org>)
-	id 1TUyWH-0005No-Qa
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:37:38 +0000
-Received: from buildd by murphy.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at murphy.debian.org>)
-	id 1TUyWF-0006f1-L0; Sun, 04 Nov 2012 11:37:35 +0000
-Message-Id: <E1TUyWF-0006f1-L0 at murphy.debian.org>
-MIME-Version: 1.0
+From buildd at brahms.debian.org Sun Feb 16 07:45:08 2014
+Return-path: <buildd at brahms.debian.org>
+Received: from muffat.debian.org ([2607:f8f0:610:4000:6564:a62:ce0c:1392])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at brahms.debian.org>)
+ id 1WEwPT-0005eU-Ud
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:45:08 +0000
+Received: from brahms.debian.org ([2607:f8f0:610:4000:216:36ff:fe40:3802])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=brahms.debian.org, EMAIL=hostmaster at brahms.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at brahms.debian.org>)
+ id 1WEwPS-0007J4-8Q
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:45:06 +0000
+Received: from buildd by brahms.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at brahms.debian.org>)
+ id 1WEwPR-000573-M1; Sun, 16 Feb 2014 07:45:05 +0000
 Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Nov 2012 11:37:35 +0000
-From: buildd on murphy <buildd at murphy.debian.org>
-To: logs at buildd.debian.org,buildd-admin at murphy.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on i386 (dist=sid)
-Key-Id: 2B54027C
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 07:45:05 +0000
+From: buildd on brahms <buildd at brahms.debian.org>
+To: buildd-admin at brahms.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on i386 (dist=sid)
+Key-Id: 383DE372
+Message-Id: <E1WEwPR-000573-M1 at brahms.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on murphy.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on brahms.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (i386)                                   04 Nov 2012 11:32 ║
+║ bedtools 2.19.0-1 (i386)                                   16 Feb 2014 07:38 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: i386
-Hit http://ftp.us.debian.org sid InRelease
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org  InRelease
-Hit http://ftp.us.debian.org sid/main Sources/DiffIndex
-Get:1 http://incoming.debian.org sid/main Sources/DiffIndex [7876 B]
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Get:2 http://incoming.debian.org sid/main i386 Packages/DiffIndex [7876 B]
-Hit http://incoming.debian.org sid/contrib i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.us.debian.org sid/main i386 Packages/DiffIndex
-Hit http://ftp.us.debian.org sid/contrib i386 Packages/DiffIndex
-Get:3 http://incoming.debian.org  Release.gpg [836 B]
-Ign http://incoming.debian.org sid/main 2012-11-04-0210.01.pdiff
-Ign http://incoming.debian.org sid/main i386 2012-11-04-0210.01.pdiff
-Get:4 http://incoming.debian.org  Release [1141 B]
-Hit http://incoming.debian.org sid/main
-Hit http://incoming.debian.org sid/main i386
-Get:5 http://incoming.debian.org  Sources [16.2 kB]
-Get:6 http://incoming.debian.org  Packages [140 kB]
-Fetched 174 kB in 3s (43.6 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: amd64
+Host Architecture: i386
+Build Architecture: i386
+
+I: NOTICE: Log filtering will replace 'build/bedtools-pNBufv/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-pNBufv' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-i386-sbuild-62e6aca5-d227-4dd0-9cc3-177b6ffc7f86' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://mirror-ubc.debian.org unstable InRelease [199 kB]
+Get:2 http://incoming.debian.org unstable InRelease [199 kB]
+Get:3 http://mirror-ubc.debian.org unstable/main Sources [7001 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://mirror-ubc.debian.org unstable/contrib Sources [58.1 kB]
+Get:6 http://mirror-ubc.debian.org unstable/non-free Sources [105 kB]
+Get:7 http://mirror-ubc.debian.org unstable/main i386 Packages [6606 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib i386 Packages [54.1 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:12 http://incoming.debian.org unstable/main i386 Packages [6606 kB]
+Get:13 http://incoming.debian.org unstable/contrib i386 Packages [54.1 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main i386 Packages [58.7 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib i386 Packages [2396 B]
+Fetched 28.3 MB in 19s (1428 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -78,223 +88,280 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 3s (330 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 2s (1453 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-NwUABJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 46 not upgraded.
+Need to get 0 B/816 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 11082 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-jXu1w3/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-14)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
-  python-minimal python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncurses5 libncursesw5 libpipeline1 libpython-stdlib
+  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libtinfo5
+  libunistring0 libxml2 man-db mime-support po-debconf python python-minimal
+  python2.7 python2.7-minimal quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
-  libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
-  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
-  po-debconf python python-minimal python2.7 python2.7-minimal quilt
-  zlib1g-dev
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+The following packages will be upgraded:
+  libncurses5 libtinfo5
+2 upgraded, 34 newly installed, 0 to remove and 44 not upgraded.
+Need to get 15.6 MB/15.6 MB of archives.
+After this operation, 51.6 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libtinfo5 i386 5.9+20140118-1 [273 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libncurses5 i386 5.9+20140118-1 [95.3 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libncursesw5 i386 5.9+20140118-1 [124 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 i386 1.2.6-2 [24.5 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libssl1.0.0 i386 1.0.1f-1 [1513 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main groff-base i386 1.22.2-5 [1066 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils i386 9.0.5 [207 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main man-db i386 2.6.6-1 [984 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 i386 0.18.3.2-1 [29.2 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 i386 1:5.14-2 [218 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libsqlite3-0 i386 3.8.3.1-1 [407 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 i386 2.9.1+dfsg1-3 [893 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libffi6 i386 3.0.13-12 [16.6 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 i386 2.38.2-5 [2204 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 i386 0.6.8-2 [133 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main libexpat1 i386 2.1.0-4 [136 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 i386 0.9.3-5 [442 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libpython2.7-minimal i386 2.7.6-5 [346 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main python2.7-minimal i386 2.7.6-5 [1167 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main file i386 1:5.14-2 [53.7 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base i386 0.18.3.2-1 [115 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libpython2.7-stdlib i386 2.7.6-5 [1840 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main python2.7 i386 2.7.6-5 [234 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main python-minimal i386 2.7.5-5 [39.0 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main libpython-stdlib i386 2.7.5-5 [18.6 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main python i386 2.7.5-5 [146 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main gettext i386 0.18.3.2-1 [1186 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:33 http://mirror-ubc.debian.org/debian/ unstable/main diffstat i386 1.58-1 [28.9 kB]
+Get:34 http://mirror-ubc.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:35 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev i386 1:1.2.8.dfsg-1 [214 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 33 newly installed, 0 to remove and 22 not upgraded.
-Need to get 0 B/18.7 MB of archives.
-After this operation, 51.3 MB of additional disk space will be used.
+Fetched 15.6 MB in 2s (5675 kB/s)
+(Reading database ... 11082 files and directories currently installed.)
+Preparing to unpack .../libtinfo5_5.9+20140118-1_i386.deb ...
+Unpacking libtinfo5:i386 (5.9+20140118-1) over (5.9+20131221-1) ...
+Setting up libtinfo5:i386 (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
+(Reading database ... 11082 files and directories currently installed.)
+Preparing to unpack .../libncurses5_5.9+20140118-1_i386.deb ...
+Unpacking libncurses5:i386 (5.9+20140118-1) over (5.9+20131221-1) ...
+Setting up libncurses5:i386 (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
 Selecting previously unselected package libncursesw5:i386.
-(Reading database ... 11010 files and directories currently installed.)
-Unpacking libncursesw5:i386 (from .../libncursesw5_5.9-10_i386.deb) ...
+(Reading database ... 11082 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_i386.deb ...
+Unpacking libncursesw5:i386 (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:i386.
-Unpacking libpipeline1:i386 (from .../libpipeline1_1.2.2-1_i386.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_i386.deb ...
+Unpacking libpipeline1:i386 (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:i386.
-Unpacking libssl1.0.0:i386 (from .../libssl1.0.0_1.0.1c-4_i386.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_i386.deb ...
+Unpacking libssl1.0.0:i386 (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_i386.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_i386.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_i386.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:i386.
-Unpacking libasprintf0c2:i386 (from .../libasprintf0c2_0.18.1.1-9_i386.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_i386.deb ...
+Unpacking libasprintf0c2:i386 (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:i386.
-Unpacking libmagic1:i386 (from .../libmagic1_5.11-2_i386.deb) ...
-Selecting previously unselected package libpcre3:i386.
-Unpacking libpcre3:i386 (from .../libpcre3_1%3a8.31-1_i386.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_i386.deb ...
+Unpacking libmagic1:i386 (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:i386.
-Unpacking libsqlite3-0:i386 (from .../libsqlite3-0_3.7.14.1-1_i386.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_i386.deb ...
+Unpacking libsqlite3-0:i386 (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:i386.
-Unpacking libxml2:i386 (from .../libxml2_2.8.0+dfsg1-6_i386.deb) ...
-Selecting previously unselected package libffi5:i386.
-Unpacking libffi5:i386 (from .../libffi5_3.0.10-3_i386.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_i386.deb ...
+Unpacking libxml2:i386 (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:i386.
+Preparing to unpack .../libffi6_3.0.13-12_i386.deb ...
+Unpacking libffi6:i386 (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:i386.
-Unpacking libglib2.0-0:i386 (from .../libglib2.0-0_2.33.12+really2.32.4-3_i386.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_i386.deb ...
+Unpacking libglib2.0-0:i386 (2.38.2-5) ...
 Selecting previously unselected package libcroco3:i386.
-Unpacking libcroco3:i386 (from .../libcroco3_0.6.6-1_i386.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_i386.deb ...
+Unpacking libcroco3:i386 (0.6.8-2) ...
 Selecting previously unselected package libexpat1:i386.
-Unpacking libexpat1:i386 (from .../libexpat1_2.1.0-1_i386.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_i386.deb ...
+Unpacking libexpat1:i386 (2.1.0-4) ...
 Selecting previously unselected package libunistring0:i386.
-Unpacking libunistring0:i386 (from .../libunistring0_0.9.3-5_i386.deb) ...
-Selecting previously unselected package libgettextpo0:i386.
-Unpacking libgettextpo0:i386 (from .../libgettextpo0_0.18.1.1-9_i386.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_i386.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_i386.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_i386.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_i386.deb ...
+Unpacking libunistring0:i386 (0.9.3-5) ...
+Selecting previously unselected package libpython2.7-minimal:i386.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_i386.deb ...
+Unpacking libpython2.7-minimal:i386 (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_i386.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_i386.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_i386.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_i386.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_i386.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_i386.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:i386.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_i386.deb ...
+Unpacking libpython2.7-stdlib:i386 (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_i386.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_i386.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_i386.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:i386.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_i386.deb ...
+Unpacking libpython-stdlib:i386 (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_i386.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_i386.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_i386.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_i386.deb) ...
+Preparing to unpack .../diffstat_1.58-1_i386.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:i386.
-Unpacking zlib1g-dev:i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_i386.deb) ...
-Setting up libncursesw5:i386 (5.9-10) ...
-Setting up libpipeline1:i386 (1.2.2-1) ...
-Setting up libssl1.0.0:i386 (1.0.1c-4) ...
-Setting up libasprintf0c2:i386 (0.18.1.1-9) ...
-Setting up libmagic1:i386 (5.11-2) ...
-Setting up libpcre3:i386 (1:8.31-1) ...
-Setting up libsqlite3-0:i386 (3.7.14.1-1) ...
-Setting up libxml2:i386 (2.8.0+dfsg1-6) ...
-Setting up libffi5:i386 (3.0.10-3) ...
-Setting up libglib2.0-0:i386 (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:i386 (0.6.6-1) ...
-Setting up libexpat1:i386 (2.1.0-1) ...
-Setting up libunistring0:i386 (0.9.3-5) ...
-Setting up libgettextpo0:i386 (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_i386.deb ...
+Unpacking zlib1g-dev:i386 (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:i386 (5.9+20140118-1) ...
+Setting up libpipeline1:i386 (1.2.6-2) ...
+Setting up libssl1.0.0:i386 (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:i386 (0.18.3.2-1) ...
+Setting up libmagic1:i386 (1:5.14-2) ...
+Setting up libsqlite3-0:i386 (3.8.3.1-1) ...
+Setting up libxml2:i386 (2.9.1+dfsg1-3) ...
+Setting up libffi6:i386 (3.0.13-12) ...
+Setting up libglib2.0-0:i386 (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:i386 (0.6.8-2) ...
+Setting up libexpat1:i386 (2.1.0-4) ...
+Setting up libunistring0:i386 (0.9.3-5) ...
+Setting up libpython2.7-minimal:i386 (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:i386 (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:i386 (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:i386 (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-686-bigmem i386 (i686)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.7_4.7.2-4 gcc-4.7_4.7.2-4 libc6-dev_2.13-35 libstdc++6_4.7.2-4 libstdc++6-4.7-dev_4.7.2-4 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.7.2-1 cpp-4.7_4.7.2-4 dash_0.5.7-3 debconf_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2- [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:i386 (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.6 g++-4.8_4.8.2-14 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 linux-libc-dev_3.12.6-2
+Package versions: apt_0.9.14.2 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2- [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -304,35 +371,56 @@ Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-i386-sbuild
+SCHROOT_CHROOT_NAME=sid-i386-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-i386-sbuild-62e6aca5-d227-4dd0-9cc3-177b6ffc7f86
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture i386
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -344,16 +432,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/installation.rst
+Restoring docs/content/related-tools.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -366,41 +459,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -452,48 +589,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -505,6 +656,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -527,13 +680,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -543,31 +700,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -575,22 +745,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -602,20 +798,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -627,7 +829,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -648,7 +850,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -732,6 +934,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -744,9 +948,9 @@ dh_strip -pbedtools
 	strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools
 dh_compress -pbedtools -X test 
 	cd debian/bedtools
-	chmod a-x usr/share/doc/bedtools/changelog usr/share/doc/bedtools/changelog.Debian
-	gzip -9nf usr/share/doc/bedtools/changelog usr/share/doc/bedtools/changelog.Debian
-	cd '/build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0'
+	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
+	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -762,7 +966,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-i386-baRb9u/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -782,64 +986,84 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_i386.deb'.
- dpkg-genchanges -B -mi386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org> >../bedtools_2.17.0-1_i386.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_i386.deb'.
+ dpkg-genchanges -B -mamd64 / i386 Build Daemon (brahms) <buildd_amd64-brahms at buildd.debian.org> >../bedtools_2.19.0-1_i386.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1137
+Build finished at 20140216-0745
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_i386.changes:
+───────────────────────────────
 
-bedtools_2.17.0-1_i386.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: i386
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: i386 Build Daemon (murphy) <buildd_i386-murphy at buildd.debian.org>
+Maintainer: amd64 / i386 Build Daemon (brahms) <buildd_amd64-brahms at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 0468a274169f528f8d6044967ba08a565693e471 448480 bedtools_2.17.0-1_i386.deb
+ 5bc58ec02031c506029f0dd6be93ed8f04a66c25 556130 bedtools_2.19.0-1_i386.deb
 Checksums-Sha256: 
- d47a9472f21292f5401fe9f28d7710873f127d9709fdb06a78b0b00a61eda008 448480 bedtools_2.17.0-1_i386.deb
+ 08dce60de398d745364d3cde981683383e5b367f0644d24d029e827dfbfc2e5f 556130 bedtools_2.19.0-1_i386.deb
 Files: 
- 9664467b070e406eb699d063a429637c 448480 science optional bedtools_2.17.0-1_i386.deb
+ 1255809cfa363dd71bcb4379c71ed199 556130 science optional bedtools_2.19.0-1_i386.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_i386.deb
+bedtools_2.19.0-1_i386.deb
 ──────────────────────────
 
  new debian package, version 2.0.
- size 448480 bytes: control archive= 4100 bytes.
+ size 556130 bytes: control archive=6289 bytes.
       32 bytes,     1 lines      conffiles            
-     832 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     833 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: i386
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1528
+ Installed-Size: 2340
  Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
@@ -852,273 +1076,270 @@ bedtools_2.17.0-1_i386.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
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-drwxr-xr-x root/root         0 2012-11-04 11:37 ./etc/
-drwxr-xr-x root/root         0 2012-11-04 11:37 ./etc/bash_completion.d/
--rw-r--r-- root/root       638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
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-drwxr-xr-x root/root         0 2012-11-04 11:37 ./usr/bin/
--rwxr-xr-x root/root        36 2012-11-04 11:37 ./usr/bin/bedToIgv
--rwxr-xr-x root/root   1357996 2012-11-04 11:37 ./usr/bin/bedtools
--rwxr-xr-x root/root        43 2012-11-04 11:37 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        42 2012-11-04 11:37 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root        36 2012-11-04 11:37 ./usr/bin/tagBam
--rwxr-xr-x root/root        44 2012-11-04 11:37 ./usr/bin/bed12ToBed6
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--rwxr-xr-x root/root        39 2012-11-04 11:37 ./usr/bin/randomBed
--rwxr-xr-x root/root        37 2012-11-04 11:37 ./usr/bin/sortBed
--rwxr-xr-x root/root        39 2012-11-04 11:37 ./usr/bin/windowBed
--rwxr-xr-x root/root        43 2012-11-04 11:37 ./usr/bin/bamToFastq
--rwxr-xr-x root/root        40 2012-11-04 11:37 ./usr/bin/closestBed
--rwxr-xr-x root/root        41 2012-11-04 11:37 ./usr/bin/coverageBed
--rwxr-xr-x root/root        42 2012-11-04 11:37 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        41 2012-11-04 11:37 ./usr/bin/annotateBed
--rwxr-xr-x root/root        41 2012-11-04 11:37 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root        44 2012-11-04 11:37 ./usr/bin/windowMaker
--rwxr-xr-x root/root        40 2012-11-04 11:37 ./usr/bin/shuffleBed
--rwxr-xr-x root/root        42 2012-11-04 11:37 ./usr/bin/pairToBed
--rwxr-xr-x root/root        38 2012-11-04 11:37 ./usr/bin/mergeBed
--rwxr-xr-x root/root        43 2012-11-04 11:37 ./usr/bin/complementBed
--rwxr-xr-x root/root        41 2012-11-04 11:37 ./usr/bin/multiBamCov
--rwxr-xr-x root/root        40 2012-11-04 11:37 ./usr/bin/clusterBed
--rwxr-xr-x root/root        43 2012-11-04 11:37 ./usr/bin/pairToPair
--rwxr-xr-x root/root        38 2012-11-04 11:37 ./usr/bin/linksBed
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--rwxr-xr-x root/root        42 2012-11-04 11:37 ./usr/bin/intersectBed
--rwxr-xr-x root/root        37 2012-11-04 11:37 ./usr/bin/slopBed
--rwxr-xr-x root/root        39 2012-11-04 11:37 ./usr/bin/expandCols
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-│ Finished                                                                     │
+│ Post Build                                                                   │
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-│ Post Build                                                                   │
+│ Cleanup                                                                      │
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-Purging /var/lib/schroot/mount/sid-i386-sbuild-657b9628-716f-4fc2-8673-01fbb0424323/build/buildd-bedtools_2.17.0-1-i386-baRb9u
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-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2:i386 ...
-Removing libcroco3:i386 ...
-Purging configuration files for libcroco3:i386 ...
-Removing python ...
-Purging configuration files for python ...
-Removing python2.7 ...
-Purging configuration files for python2.7 ...
-Removing libexpat1:i386 ...
-Purging configuration files for libexpat1:i386 ...
-Removing libglib2.0-0:i386 ...
-Purging configuration files for libglib2.0-0:i386 ...
-Removing libffi5:i386 ...
-Purging configuration files for libffi5:i386 ...
-Removing libgettextpo0:i386 ...
-Removing libmagic1:i386 ...
-Purging configuration files for libmagic1:i386 ...
-Removing libncursesw5:i386 ...
-Purging configuration files for libncursesw5:i386 ...
-Removing libpcre3:i386 ...
-Purging configuration files for libpcre3:i386 ...
-Removing libpipeline1:i386 ...
-Purging configuration files for libpipeline1:i386 ...
-Removing libsqlite3-0:i386 ...
-Purging configuration files for libsqlite3-0:i386 ...
-Removing libssl1.0.0:i386 ...
-Purging configuration files for libssl1.0.0:i386 ...
-Removing libunistring0:i386 ...
-Purging configuration files for libunistring0:i386 ...
-Removing libxml2:i386 ...
-Purging configuration files for libxml2:i386 ...
-Removing mime-support ...
-Purging configuration files for mime-support ...
-Removing python-minimal ...
-Removing python2.7-minimal ...
-Purging configuration files for python2.7-minimal ...
-Removing zlib1g-dev:i386 ...
+Purging /«BUILDDIR»
+Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: i386
-Build-Space: 74760
-Build-Time: 260
+Build Architecture: i386
+Build-Space: 102032
+Build-Time: 311
 Distribution: sid
-Install-Time: 17
-Job: bedtools_2.17.0-1
+Host Architecture: i386
+Install-Time: 46
+Job: bedtools_2.19.0-1
+Machine Architecture: amd64
 Package: bedtools
-Package-Time: 291
-Source-Version: 2.17.0-1
-Space: 74760
+Package-Time: 410
+Source-Version: 2.19.0-1
+Space: 102032
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1137
-Build needed 00:04:51, 74760k disc space
-Signature with key '2B54027C' requested:
+Finished at 20140216-0745
+Build needed 00:06:50, 102032k disc space
+Signature with key '383DE372' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_i386.changes 383DE372
+
+Successfully signed changes file
diff --git a/info b/info
index 1fb46e1..2f84613 100644
--- a/info
+++ b/info
@@ -1,13 +1,11 @@
-s390~1352028830~sid~successful
-powerpc~1352028937~sid~successful
-kfreebsd-i386~1352028945~sid~successful
-s390x~1352028994~sid~successful
-i386~1352029059~sid~successful
-kfreebsd-amd64~1352029118~sid~successful
-ia64~1352029175~sid~successful
-sparc~1352029553~sid~successful
-mipsel~1352030115~sid~successful
-mips~1352030175~sid~successful
-armhf~1352030268~sid~successful
-armel~1352030522~sid~successful
-hurd-i386~1352037329~sid~successful
+s390x~1392536486~sid~successful
+kfreebsd-i386~1392536591~sid~successful
+i386~1392536709~sid~successful
+kfreebsd-amd64~1392536752~sid~successful
+powerpc~1392536755~sid~successful
+sparc~1392537405~sid~successful
+mipsel~1392538575~sid~successful
+armhf~1392540769~sid~successful
+armel~1392542931~sid~successful
+mips~1392544341~sid~successful
+hurd-i386~1392544636~sid~successful
diff --git a/kfreebsd-amd64.log b/kfreebsd-amd64.log
index 8a80b47..566ea95 100644
--- a/kfreebsd-amd64.log
+++ b/kfreebsd-amd64.log
@@ -1,62 +1,74 @@
-From buildd at fano.debian.org Sun Nov 04 11:38:38 2012
+From buildd at fano.debian.org Sun Feb 16 07:45:51 2014
 Return-path: <buildd at fano.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at fano.debian.org>)
-	id 1TUyXG-0001lj-8O
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:38:38 +0000
-Received: from fano.debian.org ([206.12.19.110])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at fano.debian.org>)
-	id 1TUyXE-0005On-Om; Sun, 04 Nov 2012 11:38:37 +0000
-Received: from buildd by fano.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at fano.debian.org>)
-	id 1TUyXC-000PiZ-8w; Sun, 04 Nov 2012 11:38:34 +0000
-Message-Id: <E1TUyXC-000PiZ-8w at fano.debian.org>
-MIME-Version: 1.0
+Received: from muffat.debian.org ([2607:f8f0:610:4000:6564:a62:ce0c:1392])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at fano.debian.org>)
+ id 1WEwQB-0005op-7q
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:45:51 +0000
+Received: from fano.debian.org ([2607:f8f0:610:4000:6564:a62:19:110])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=fano.debian.org, EMAIL=hostmaster at fano.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at fano.debian.org>)
+ id 1WEwQ8-0007K5-7U; Sun, 16 Feb 2014 07:45:48 +0000
+Received: from buildd by fano.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at fano.debian.org>)
+ id 1WEwQ7-000LOj-Qw; Sun, 16 Feb 2014 07:45:47 +0000
 Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Nov 2012 11:38:34 +0000
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 07:45:47 +0000
 From: buildd on fano <buildd at fano.debian.org>
-To: logs at buildd.debian.org,christoph at debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on kfreebsd-amd64
-	(dist=sid)
-Key-Id: 4584BE29
+To: christoph at debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on kfreebsd-amd64
+ (dist=sid)
+Key-Id: 1B08409D
+Message-Id: <E1WEwQ7-000LOj-Qw at fano.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on fano.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on fano.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (kfreebsd-amd64)                         04 Nov 2012 11:30 ║
+║ bedtools 2.19.0-1 (kfreebsd-amd64)                         16 Feb 2014 07:38 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: kfreebsd-amd64
-Get:1 http://incoming.debian.org unstable InRelease [219 kB]
-Get:2 http://mirror-ubc.debian.org unstable InRelease [219 kB]
-Get:3 http://mirror-ubc.debian.org unstable/main Sources [6381 kB]
-Get:4 http://mirror-ubc.debian.org unstable/contrib Sources [53.1 kB]
-Get:5 http://mirror-ubc.debian.org unstable/non-free Sources [101 kB]
-Get:6 http://mirror-ubc.debian.org unstable/main kfreebsd-amd64 Packages [5717 kB]
-Ign http://incoming.debian.org  InRelease
-Get:7 http://incoming.debian.org unstable/main Sources [6381 kB]
-Get:8 http://mirror-ubc.debian.org unstable/contrib kfreebsd-amd64 Packages [36.5 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [53.1 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:11 http://incoming.debian.org unstable/main kfreebsd-amd64 Packages [5717 kB]
-Get:12 http://incoming.debian.org unstable/contrib kfreebsd-amd64 Packages [36.5 kB]
-Get:13 http://incoming.debian.org  Release.gpg [836 B]
-Get:14 http://incoming.debian.org  Release [1141 B]
-Get:15 http://incoming.debian.org  Sources [16.2 kB]
-Get:16 http://incoming.debian.org  Packages [140 kB]
-Fetched 25.2 MB in 49s (512 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: kfreebsd-amd64
+Host Architecture: kfreebsd-amd64
+Build Architecture: kfreebsd-amd64
+
+I: NOTICE: Log filtering will replace 'build/bedtools-3iXCwt/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-3iXCwt' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-ka-sbuild-1392536304-78452' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://mirror-ubc.debian.org unstable InRelease [199 kB]
+Get:2 http://mirror-ubc.debian.org unstable/main Sources [9063 kB]
+Get:3 http://incoming.debian.org unstable InRelease [199 kB]
+Get:4 http://mirror-ubc.debian.org unstable/contrib Sources [67.8 kB]
+Get:5 http://mirror-ubc.debian.org unstable/non-free Sources [126 kB]
+Get:6 http://mirror-ubc.debian.org unstable/main kfreebsd-amd64 Packages [8184 kB]
+Get:7 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:8 http://incoming.debian.org unstable/main Sources [9063 kB]
+Get:9 http://mirror-ubc.debian.org unstable/contrib kfreebsd-amd64 Packages [49.6 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [67.8 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [126 kB]
+Get:12 http://incoming.debian.org unstable/main kfreebsd-amd64 Packages [8184 kB]
+Get:13 http://incoming.debian.org unstable/contrib kfreebsd-amd64 Packages [49.6 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [81.9 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1277 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [20 B]
+Get:17 http://incoming.debian.org buildd-unstable/main kfreebsd-amd64 Packages [76.6 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib kfreebsd-amd64 Packages [1044 B]
+Fetched 35.6 MB in 8s (4321 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -76,241 +88,261 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 2s (563 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 2s (1628 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-TGdDVw/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 25 not upgraded.
+Need to get 0 B/824 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 11616 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-2vhA6K/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.12)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.3)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.4)
-diffutils: already installed (1:3.2-7)
-dpkg: already installed (1.16.9)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-5)
-freebsd-utils: already installed (9.0+ds1-8)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-14)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.2)
-util-linux: already installed (2.20.1-5.2)
-libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  diffstat file gettext gettext-base groff-base html2text intltool-debian
-  libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
-  libncursesw5 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0 libxml2
-  man-db mime-support po-debconf python-minimal python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1
+  libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt zlib1g-dev
 Suggested packages:
-  devscripts dh-make gettext-doc groff less www-browser libmail-box-perl
-  python-doc python-tk python2.7-doc binfmt-support procmail graphviz
-  default-mta mail-transport-agent
+  wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
+  www-browser libmail-box-perl python-doc python-tk python2.7-doc
+  binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
-  cdbs debhelper diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
-  libmagic1 libncursesw5 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0
-  libxml2 man-db mime-support po-debconf python python-minimal python2.7
-  python2.7-minimal quilt zlib1g-dev
-0 upgraded, 30 newly installed, 0 to remove and 1 not upgraded.
-Need to get 16.3 MB of archives.
-After this operation, 44.4 MB of additional disk space will be used.
-Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libncursesw5 kfreebsd-amd64 5.9-10 [140 kB]
-Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 kfreebsd-amd64 1.2.2-1 [39.8 kB]
-Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libssl1.0.0 kfreebsd-amd64 1.0.1c-4 [1215 kB]
-Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-amd64 0.18.1.1-9 [26.8 kB]
-Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 kfreebsd-amd64 5.11-2 [202 kB]
-Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libsqlite3-0 kfreebsd-amd64 3.7.14.1-1 [457 kB]
-Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 kfreebsd-amd64 2.8.0+dfsg1-6 [914 kB]
-Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libffi5 kfreebsd-amd64 3.0.10-3 [23.9 kB]
-Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-amd64 2.33.12+really2.32.4-3 [1831 kB]
-Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 kfreebsd-amd64 0.6.6-1 [133 kB]
-Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 kfreebsd-amd64 0.9.3-5 [434 kB]
-Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 kfreebsd-amd64 0.18.1.1-9 [145 kB]
-Get:13 http://mirror-ubc.debian.org/debian/ unstable/main groff-base kfreebsd-amd64 1.21-9 [1113 kB]
-Get:14 http://mirror-ubc.debian.org/debian/ unstable/main man-db kfreebsd-amd64 2.6.3-1 [1053 kB]
-Get:15 http://mirror-ubc.debian.org/debian/ unstable/main file kfreebsd-amd64 5.11-2 [51.8 kB]
-Get:16 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base kfreebsd-amd64 0.18.1.1-9 [153 kB]
-Get:17 http://mirror-ubc.debian.org/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:18 http://mirror-ubc.debian.org/debian/ unstable/main python2.7-minimal kfreebsd-amd64 2.7.3-5 [1695 kB]
-Get:19 http://mirror-ubc.debian.org/debian/ unstable/main python2.7 kfreebsd-amd64 2.7.3-5 [2667 kB]
-Get:20 http://mirror-ubc.debian.org/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:21 http://mirror-ubc.debian.org/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:22 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:23 http://mirror-ubc.debian.org/debian/ unstable/main html2text kfreebsd-amd64 1.3.2a-15 [104 kB]
-Get:24 http://mirror-ubc.debian.org/debian/ unstable/main gettext kfreebsd-amd64 0.18.1.1-9 [1965 kB]
-Get:25 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:26 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:27 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:28 http://mirror-ubc.debian.org/debian/ unstable/main diffstat kfreebsd-amd64 1.55-3 [29.9 kB]
-Get:29 http://mirror-ubc.debian.org/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:30 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-amd64 1:1.2.7.dfsg-13 [215 kB]
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1
+  libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+0 upgraded, 33 newly installed, 0 to remove and 25 not upgraded.
+Need to get 14.4 MB/14.4 MB of archives.
+After this operation, 45.3 MB of additional disk space will be used.
+Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libncursesw5 kfreebsd-amd64 5.9+20140118-1 [118 kB]
+Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 kfreebsd-amd64 1.2.6-2 [25.5 kB]
+Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libssl1.0.0 kfreebsd-amd64 1.0.1f-1 [1003 kB]
+Get:4 http://mirror-ubc.debian.org/debian/ unstable/main groff-base kfreebsd-amd64 1.22.2-5 [1045 kB]
+Get:5 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils kfreebsd-amd64 9.0.5 [211 kB]
+Get:6 http://mirror-ubc.debian.org/debian/ unstable/main man-db kfreebsd-amd64 2.6.6-1 [985 kB]
+Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-amd64 0.18.3.2-1 [29.2 kB]
+Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 kfreebsd-amd64 1:5.14-2 [216 kB]
+Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libsqlite3-0 kfreebsd-amd64 3.8.3.1-1 [405 kB]
+Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 kfreebsd-amd64 2.9.1+dfsg1-3 [922 kB]
+Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libffi6 kfreebsd-amd64 3.0.13-12 [18.9 kB]
+Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-amd64 2.38.2-5 [2227 kB]
+Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 kfreebsd-amd64 0.6.8-2 [134 kB]
+Get:14 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 kfreebsd-amd64 0.9.3-5 [434 kB]
+Get:15 http://mirror-ubc.debian.org/debian/ unstable/main file kfreebsd-amd64 1:5.14-2 [54.2 kB]
+Get:16 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base kfreebsd-amd64 0.18.3.2-1 [115 kB]
+Get:17 http://mirror-ubc.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:18 http://mirror-ubc.debian.org/debian/ unstable/main libpython2.7-minimal kfreebsd-amd64 2.7.6-5 [344 kB]
+Get:19 http://mirror-ubc.debian.org/debian/ unstable/main python2.7-minimal kfreebsd-amd64 2.7.6-5 [1067 kB]
+Get:20 http://mirror-ubc.debian.org/debian/ unstable/main libpython2.7-stdlib kfreebsd-amd64 2.7.6-5 [1804 kB]
+Get:21 http://mirror-ubc.debian.org/debian/ unstable/main python2.7 kfreebsd-amd64 2.7.6-5 [234 kB]
+Get:22 http://mirror-ubc.debian.org/debian/ unstable/main python-minimal kfreebsd-amd64 2.7.5-5 [39.2 kB]
+Get:23 http://mirror-ubc.debian.org/debian/ unstable/main libpython-stdlib kfreebsd-amd64 2.7.5-5 [18.7 kB]
+Get:24 http://mirror-ubc.debian.org/debian/ unstable/main python kfreebsd-amd64 2.7.5-5 [146 kB]
+Get:25 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:26 http://mirror-ubc.debian.org/debian/ unstable/main gettext kfreebsd-amd64 0.18.3.2-1 [1198 kB]
+Get:27 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:28 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:29 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:30 http://mirror-ubc.debian.org/debian/ unstable/main diffstat kfreebsd-amd64 1.58-1 [29.5 kB]
+Get:31 http://mirror-ubc.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:32 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-amd64 1:1.2.8.dfsg-1 [217 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 16.3 MB in 5s (2816 kB/s)
+Fetched 14.4 MB in 1s (11.1 MB/s)
 Selecting previously unselected package libncursesw5:kfreebsd-amd64.
-(Reading database ... 11630 files and directories currently installed.)
-Unpacking libncursesw5:kfreebsd-amd64 (from .../libncursesw5_5.9-10_kfreebsd-amd64.deb) ...
+(Reading database ... 11616 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_kfreebsd-amd64.deb ...
+Unpacking libncursesw5:kfreebsd-amd64 (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:kfreebsd-amd64.
-Unpacking libpipeline1:kfreebsd-amd64 (from .../libpipeline1_1.2.2-1_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_kfreebsd-amd64.deb ...
+Unpacking libpipeline1:kfreebsd-amd64 (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:kfreebsd-amd64.
-Unpacking libssl1.0.0:kfreebsd-amd64 (from .../libssl1.0.0_1.0.1c-4_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_kfreebsd-amd64.deb ...
+Unpacking libssl1.0.0:kfreebsd-amd64 (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_kfreebsd-amd64.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_kfreebsd-amd64.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_kfreebsd-amd64.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:kfreebsd-amd64.
-Unpacking libasprintf0c2:kfreebsd-amd64 (from .../libasprintf0c2_0.18.1.1-9_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_kfreebsd-amd64.deb ...
+Unpacking libasprintf0c2:kfreebsd-amd64 (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:kfreebsd-amd64.
-Unpacking libmagic1:kfreebsd-amd64 (from .../libmagic1_5.11-2_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_kfreebsd-amd64.deb ...
+Unpacking libmagic1:kfreebsd-amd64 (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:kfreebsd-amd64.
-Unpacking libsqlite3-0:kfreebsd-amd64 (from .../libsqlite3-0_3.7.14.1-1_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_kfreebsd-amd64.deb ...
+Unpacking libsqlite3-0:kfreebsd-amd64 (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:kfreebsd-amd64.
-Unpacking libxml2:kfreebsd-amd64 (from .../libxml2_2.8.0+dfsg1-6_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libffi5:kfreebsd-amd64.
-Unpacking libffi5:kfreebsd-amd64 (from .../libffi5_3.0.10-3_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_kfreebsd-amd64.deb ...
+Unpacking libxml2:kfreebsd-amd64 (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:kfreebsd-amd64.
+Preparing to unpack .../libffi6_3.0.13-12_kfreebsd-amd64.deb ...
+Unpacking libffi6:kfreebsd-amd64 (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:kfreebsd-amd64.
-Unpacking libglib2.0-0:kfreebsd-amd64 (from .../libglib2.0-0_2.33.12+really2.32.4-3_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_kfreebsd-amd64.deb ...
+Unpacking libglib2.0-0:kfreebsd-amd64 (2.38.2-5) ...
 Selecting previously unselected package libcroco3:kfreebsd-amd64.
-Unpacking libcroco3:kfreebsd-amd64 (from .../libcroco3_0.6.6-1_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_kfreebsd-amd64.deb ...
+Unpacking libcroco3:kfreebsd-amd64 (0.6.8-2) ...
 Selecting previously unselected package libunistring0:kfreebsd-amd64.
-Unpacking libunistring0:kfreebsd-amd64 (from .../libunistring0_0.9.3-5_kfreebsd-amd64.deb) ...
-Selecting previously unselected package libgettextpo0:kfreebsd-amd64.
-Unpacking libgettextpo0:kfreebsd-amd64 (from .../libgettextpo0_0.18.1.1-9_kfreebsd-amd64.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_kfreebsd-amd64.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_kfreebsd-amd64.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_kfreebsd-amd64.deb ...
+Unpacking libunistring0:kfreebsd-amd64 (0.9.3-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-2_kfreebsd-amd64.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_kfreebsd-amd64.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_kfreebsd-amd64.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_kfreebsd-amd64.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-minimal:kfreebsd-amd64.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_kfreebsd-amd64.deb ...
+Unpacking libpython2.7-minimal:kfreebsd-amd64 (2.7.6-5) ...
 Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_kfreebsd-amd64.deb) ...
+Preparing to unpack .../python2.7-minimal_2.7.6-5_kfreebsd-amd64.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
+Selecting previously unselected package libpython2.7-stdlib:kfreebsd-amd64.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_kfreebsd-amd64.deb ...
+Unpacking libpython2.7-stdlib:kfreebsd-amd64 (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_kfreebsd-amd64.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_kfreebsd-amd64.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_kfreebsd-amd64.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:kfreebsd-amd64.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_kfreebsd-amd64.deb ...
+Unpacking libpython-stdlib:kfreebsd-amd64 (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_kfreebsd-amd64.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-amd64.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_kfreebsd-amd64.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_kfreebsd-amd64.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_kfreebsd-amd64.deb) ...
+Preparing to unpack .../diffstat_1.58-1_kfreebsd-amd64.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:kfreebsd-amd64.
-Unpacking zlib1g-dev:kfreebsd-amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_kfreebsd-amd64.deb) ...
-Setting up libncursesw5:kfreebsd-amd64 (5.9-10) ...
-Setting up libpipeline1:kfreebsd-amd64 (1.2.2-1) ...
-Setting up libssl1.0.0:kfreebsd-amd64 (1.0.1c-4) ...
-Setting up libasprintf0c2:kfreebsd-amd64 (0.18.1.1-9) ...
-Setting up libmagic1:kfreebsd-amd64 (5.11-2) ...
-Setting up libsqlite3-0:kfreebsd-amd64 (3.7.14.1-1) ...
-Setting up libxml2:kfreebsd-amd64 (2.8.0+dfsg1-6) ...
-Setting up libffi5:kfreebsd-amd64 (3.0.10-3) ...
-Setting up libglib2.0-0:kfreebsd-amd64 (2.33.12+really2.32.4-3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_kfreebsd-amd64.deb ...
+Unpacking zlib1g-dev:kfreebsd-amd64 (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:kfreebsd-amd64 (5.9+20140118-1) ...
+Setting up libpipeline1:kfreebsd-amd64 (1.2.6-2) ...
+Setting up libssl1.0.0:kfreebsd-amd64 (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:kfreebsd-amd64 (0.18.3.2-1) ...
+Setting up libmagic1:kfreebsd-amd64 (1:5.14-2) ...
+Setting up libsqlite3-0:kfreebsd-amd64 (3.8.3.1-1) ...
+Setting up libxml2:kfreebsd-amd64 (2.9.1+dfsg1-3) ...
+Setting up libffi6:kfreebsd-amd64 (3.0.13-12) ...
+Setting up libglib2.0-0:kfreebsd-amd64 (2.38.2-5) ...
 No schema files found: doing nothing.
-Setting up libcroco3:kfreebsd-amd64 (0.6.6-1) ...
+Setting up libcroco3:kfreebsd-amd64 (0.6.8-2) ...
 Setting up libunistring0:kfreebsd-amd64 (0.9.3-5) ...
-Setting up libgettextpo0:kfreebsd-amd64 (0.18.1.1-9) ...
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-minimal:kfreebsd-amd64 (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up libpython2.7-stdlib:kfreebsd-amd64 (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:kfreebsd-amd64 (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:kfreebsd-amd64 (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
-Kernel: GNU/kFreeBSD 8.1-1-amd64 kfreebsd-amd64 (x86_64)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.7_4.7.2-4 gcc-4.7_4.7.2-4 kfreebsd-kernel-headers_0.82 libc0.1-dev_2.13-36 libstdc++6_4.7.2-4 libstdc++6-4.7-dev_4.7.2-4
-Package versions: apt_0.9.7.6 base-files_6.12 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.2 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.7_4.7.2-4 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.4 diffstat_1.55-3 diffutils_1:3.2-7 dpkg_1.16.9 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.1 [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:kfreebsd-amd64 (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: GNU/kFreeBSD 9.0-2-amd64 kfreebsd-amd64 (x86_64)
+Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6 g++-4.8_4.8.2-14 gcc-4.8_4.8.2-14 kfreebsd-kernel-headers_9.2~8 libc0.1-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14
+Package versions: apt_0.9.15 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2- [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -320,35 +352,56 @@ Package versions: apt_0.9.7.6 base-files_6.12 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-kfreebsd-amd64-sbuild
+SCHROOT_CHROOT_NAME=sid-ka-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-ka-sbuild-1392536304-78452
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture kfreebsd-amd64
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -360,16 +413,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/installation.rst
+Restoring docs/content/related-tools.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -382,41 +440,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -442,6 +544,8 @@ g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-s
  * compiling BamStandardIndex_p.cpp
 src/api/internal/index/BamStandardIndex_p.cpp: In member function 'void BamTools::Internal::BamStandardIndex::WriteLinearOffsets(const int&, BamTools::Internal::BaiLinearOffsetVector&)':
 src/api/internal/index/BamStandardIndex_p.cpp:958:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
+     if ( numBytesWritten != (sizeof(offsetCount) + linearOffsets.size()*sizeof(uint64_t)) )
+                                                                                         ^
  * compiling BamToolsIndex_p.cpp
  * compiling BamDeviceFactory_p.cpp
  * compiling BamFile_p.cpp
@@ -449,6 +553,8 @@ src/api/internal/index/BamStandardIndex_p.cpp:958:89: warning: comparison betwee
  * compiling BamHttp_p.cpp
 src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendRequest(size_t)':
 src/api/internal/io/BamHttp_p.cpp:396:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
+     return ( WriteToSocket(requestHeader.c_str(), headerSize) == headerSize );
+                                                                  ^
  * compiling BamPipe_p.cpp
  * compiling BgzfStream_p.cpp
  * compiling ByteArray_p.cpp
@@ -460,8 +566,6 @@ src/api/internal/io/BamHttp_p.cpp:396:66: warning: comparison between signed and
  * compiling TcpSocketEngine_p.cpp
  * compiling TcpSocketEngine_unix_p.cpp
  * compiling TcpSocket_p.cpp
-src/api/internal/io/TcpSocket_p.cpp: In member function 'std::string BamTools::Internal::TcpSocket::ReadLine(int64_t)':
-src/api/internal/io/TcpSocket_p.cpp:336:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  * compiling SamFormatParser_p.cpp
  * compiling SamFormatPrinter_p.cpp
  * compiling SamHeaderValidator_p.cpp
@@ -474,48 +578,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -527,6 +645,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -549,13 +669,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -565,31 +689,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -597,22 +734,43 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -624,20 +782,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -649,7 +813,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -670,7 +834,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -754,6 +918,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -768,7 +934,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -784,7 +950,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -795,6 +961,7 @@ dh_shlibdeps -pbedtools
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -803,65 +970,85 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_kfreebsd-amd64.deb'.
- dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../bedtools_2.17.0-1_kfreebsd-amd64.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_kfreebsd-amd64.deb'.
+ dpkg-genchanges -B -mkfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org> >../bedtools_2.19.0-1_kfreebsd-amd64.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1138
+Build finished at 20140216-0745
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_kfreebsd-amd64.changes:
+─────────────────────────────────────────
 
-bedtools_2.17.0-1_kfreebsd-amd64.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: kfreebsd-amd64
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
 Maintainer: kfreebsd-amd64 Build Daemon (fano) <buildd_kfreebsd-amd64-fano at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- d017bfbed27b5e6dd38e41556d7d5d75a8e33796 442880 bedtools_2.17.0-1_kfreebsd-amd64.deb
+ 3bdae112f69d3fb060225c770a6be72ab527f96d 554780 bedtools_2.19.0-1_kfreebsd-amd64.deb
 Checksums-Sha256: 
- eb59d98850f419a686626e8acb1f2d5a1be348b377f4dbf12960bbeaa25007d3 442880 bedtools_2.17.0-1_kfreebsd-amd64.deb
+ d001e029cc489ead144859e7695cf24f2486b86e806d72df6a0a9e01fc36f03c 554780 bedtools_2.19.0-1_kfreebsd-amd64.deb
 Files: 
- 4550a3a1693fd465bffd4038052c64a0 442880 science optional bedtools_2.17.0-1_kfreebsd-amd64.deb
+ dc2ed3e1fa1b2aa1cf4aca35e69d50d8 554780 science optional bedtools_2.19.0-1_kfreebsd-amd64.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_kfreebsd-amd64.deb
+bedtools_2.19.0-1_kfreebsd-amd64.deb
 ────────────────────────────────────
 
  new debian package, version 2.0.
- size 442880 bytes: control archive= 4116 bytes.
+ size 554780 bytes: control archive=6300 bytes.
       32 bytes,     1 lines      conffiles            
-     844 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     849 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: kfreebsd-amd64
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1417
- Depends: libc0.1 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
+ Installed-Size: 2231
+ Depends: libc0.1 (>= 2.17-91), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
  Priority: optional
@@ -873,203 +1060,270 @@ bedtools_2.17.0-1_kfreebsd-amd64.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 11:38 ./
-drwxr-xr-x root/root         0 2012-11-04 11:38 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:38 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:38 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 11:38 ./usr/share/doc/bedtools/
--rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root         0 2012-11-04 11:38 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
-drwxr-xr-x root/root         0 2012-11-04 11:38 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:34 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
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+-rw-r--r-- root/root       167 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/two_blocks.sam
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/
+-rw-r--r-- root/root      3537 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/test-reldist.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/sample/
+-rw-r--r-- root/root      1972 2014-02-09 02:29 ./usr/share/bedtools/test/sample/human.hg19.genome
+-rw-r--r-- root/root      1083 2014-02-09 02:29 ./usr/share/bedtools/test/sample/sample_help_withoutVersion.txt
+-rw-r--r-- root/root      3890 2014-02-09 02:29 ./usr/share/bedtools/test/sample/test-sample.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/slop/
+-rw-r--r-- root/root        41 2014-02-09 02:29 ./usr/share/bedtools/test/slop/a.bed
+-rw-r--r-- root/root      3609 2014-02-09 02:29 ./usr/share/bedtools/test/slop/test-slop.sh
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/slop/tiny.genome
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/a.bed
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/b.bed
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/c.bed
+-rw-r--r-- root/root        18 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/d.bed
+-rw-r--r-- root/root      3077 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/test-subtract.sh
+-rw-r--r-- root/root      1453 2014-02-09 02:29 ./usr/share/bedtools/test/test.sh
+drwxr-xr-x root/root         0 2014-02-16 07:45 ./usr/bin/
+-rwxr-xr-x root/root        41 2014-02-16 07:45 ./usr/bin/annotateBed
+-rwxr-xr-x root/root        41 2014-02-16 07:45 ./usr/bin/bamToBed
+-rwxr-xr-x root/root        43 2014-02-16 07:45 ./usr/bin/bamToFastq
+-rwxr-xr-x root/root        44 2014-02-16 07:45 ./usr/bin/bed12ToBed6
+-rwxr-xr-x root/root        43 2014-02-16 07:45 ./usr/bin/bedpeToBam
+-rwxr-xr-x root/root        41 2014-02-16 07:45 ./usr/bin/bedToBam
+-rwxr-xr-x root/root        36 2014-02-16 07:45 ./usr/bin/bedToIgv
+-rwxr-xr-x root/root   1654464 2014-02-16 07:45 ./usr/bin/bedtools
+-rwxr-xr-x root/root        40 2014-02-16 07:45 ./usr/bin/closestBed
+-rwxr-xr-x root/root        40 2014-02-16 07:45 ./usr/bin/clusterBed
+-rwxr-xr-x root/root        43 2014-02-16 07:45 ./usr/bin/complementBed
+-rwxr-xr-x root/root        41 2014-02-16 07:45 ./usr/bin/coverageBed
+-rwxr-xr-x root/root        39 2014-02-16 07:45 ./usr/bin/expandCols
+-rwxr-xr-x root/root        41 2014-02-16 07:45 ./usr/bin/fastaFromBed
+-rwxr-xr-x root/root        38 2014-02-16 07:45 ./usr/bin/flankBed
+-rwxr-xr-x root/root        42 2014-02-16 07:45 ./usr/bin/genomeCoverageBed
+-rwxr-xr-x root/root        40 2014-02-16 07:45 ./usr/bin/getOverlap
+-rwxr-xr-x root/root        42 2014-02-16 07:45 ./usr/bin/intersectBed
+-rwxr-xr-x root/root        38 2014-02-16 07:45 ./usr/bin/linksBed
+-rwxr-xr-x root/root        36 2014-02-16 07:45 ./usr/bin/mapBed
+-rwxr-xr-x root/root        42 2014-02-16 07:45 ./usr/bin/maskFastaFromBed
+-rwxr-xr-x root/root        38 2014-02-16 07:45 ./usr/bin/mergeBed
+-rwxr-xr-x root/root        41 2014-02-16 07:45 ./usr/bin/multiBamCov
+-rwxr-xr-x root/root        43 2014-02-16 07:45 ./usr/bin/multiIntersectBed
+-rwxr-xr-x root/root        36 2014-02-16 07:45 ./usr/bin/nucBed
+-rwxr-xr-x root/root        42 2014-02-16 07:45 ./usr/bin/pairToBed
+-rwxr-xr-x root/root        43 2014-02-16 07:45 ./usr/bin/pairToPair
+-rwxr-xr-x root/root        39 2014-02-16 07:45 ./usr/bin/randomBed
+-rwxr-xr-x root/root        40 2014-02-16 07:45 ./usr/bin/shuffleBed
+-rwxr-xr-x root/root        37 2014-02-16 07:45 ./usr/bin/slopBed
+-rwxr-xr-x root/root        37 2014-02-16 07:45 ./usr/bin/sortBed
+-rwxr-xr-x root/root        41 2014-02-16 07:45 ./usr/bin/subtractBed
+-rwxr-xr-x root/root        36 2014-02-16 07:45 ./usr/bin/tagBam
+-rwxr-xr-x root/root        42 2014-02-16 07:45 ./usr/bin/unionBedGraphs
+-rwxr-xr-x root/root        39 2014-02-16 07:45 ./usr/bin/windowBed
+-rwxr-xr-x root/root        44 2014-02-16 07:45 ./usr/bin/windowMaker
+drwxr-xr-x root/root         0 2014-02-16 07:45 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 07:45 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-ka-sbuild-1352028639-94706/build/buildd-bedtools_2.17.0-1-kfreebsd-amd64-LPHYsW
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: kfreebsd-amd64
-Build-Space: 118942
-Build-Time: 229
+Build Architecture: kfreebsd-amd64
+Build-Space: 155294
+Build-Time: 284
 Distribution: sid
-Install-Time: 76
-Job: bedtools_2.17.0-1
+Host Architecture: kfreebsd-amd64
+Install-Time: 31
+Job: bedtools_2.19.0-1
+Machine Architecture: kfreebsd-amd64
 Package: bedtools
-Package-Time: 471
-Source-Version: 2.17.0-1
-Space: 118942
+Package-Time: 435
+Source-Version: 2.19.0-1
+Space: 155294
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1138
-Build needed 00:07:51, 118942k disc space
-Signature with key '4584BE29' requested:
+Finished at 20140216-0745
+Build needed 00:07:15, 155294k disc space
+Signature with key '1B08409D' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_kfreebsd-amd64.changes 1B08409D
+
+Successfully signed changes file
diff --git a/kfreebsd-i386.log b/kfreebsd-i386.log
index 491421c..609cc2c 100644
--- a/kfreebsd-i386.log
+++ b/kfreebsd-i386.log
@@ -1,62 +1,74 @@
-From buildd at finzi.debian.org Sun Nov 04 11:35:45 2012
-Return-path: <buildd at finzi.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
-	id 1TUyUT-0001Ig-4n
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:35:45 +0000
-Received: from finzi.debian.org ([206.12.19.111])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=finzi.debian.org, EMAIL=hostmaster at finzi.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at finzi.debian.org>)
-	id 1TUyUR-00059S-AT; Sun, 04 Nov 2012 11:35:44 +0000
-Received: from buildd by finzi.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at finzi.debian.org>)
-	id 1TUyUP-000LBZ-1b; Sun, 04 Nov 2012 11:35:41 +0000
-Message-Id: <E1TUyUP-000LBZ-1b at finzi.debian.org>
-MIME-Version: 1.0
+From buildd at fils.debian.org Sun Feb 16 07:43:10 2014
+Return-path: <buildd at fils.debian.org>
+Received: from mailly.debian.org ([2001:41b8:202:deb:6564:a62:52c3:4b72])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at fils.debian.org>)
+ id 1WEwNa-0005Qu-KN
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:43:10 +0000
+Received: from fils.debian.org ([2001:41b8:202:deb:216:38ff:fe45:abf5])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=fils.debian.org, EMAIL=hostmaster at fils.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at fils.debian.org>)
+ id 1WEwNZ-00008R-Tj; Sun, 16 Feb 2014 07:43:09 +0000
+Received: from buildd by fils.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at fils.debian.org>)
+ id 1WEwNZ-000JMB-EV; Sun, 16 Feb 2014 07:43:09 +0000
 Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Nov 2012 11:35:40 +0000
-From: buildd on finzi <buildd at finzi.debian.org>
-To: logs at buildd.debian.org,christoph at debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on kfreebsd-i386
-	(dist=sid)
-Key-Id: B3DA9773
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 07:43:09 +0000
+From: buildd on fils <buildd at fils.debian.org>
+To: christoph at debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on kfreebsd-i386
+ (dist=sid)
+Key-Id: 10E2E8E8
+Message-Id: <E1WEwNZ-000JMB-EV at fils.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on finzi.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on fils.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (kfreebsd-i386)                          04 Nov 2012 11:29 ║
+║ bedtools 2.19.0-1 (kfreebsd-i386)                          16 Feb 2014 07:37 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: kfreebsd-i386
-Get:1 http://incoming.debian.org unstable InRelease [219 kB]
-Ign http://incoming.debian.org  InRelease
-Get:2 http://incoming.debian.org unstable/main Sources [6381 kB]
-Get:3 http://mirror-ubc.debian.org unstable InRelease [219 kB]
-Get:4 http://mirror-ubc.debian.org unstable/main Sources [6381 kB]
-Get:5 http://mirror-ubc.debian.org unstable/contrib Sources [53.1 kB]
-Get:6 http://mirror-ubc.debian.org unstable/non-free Sources [101 kB]
-Get:7 http://mirror-ubc.debian.org unstable/main kfreebsd-i386 Packages [5715 kB]
-Get:8 http://mirror-ubc.debian.org unstable/contrib kfreebsd-i386 Packages [36.4 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [53.1 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:11 http://incoming.debian.org unstable/main kfreebsd-i386 Packages [5715 kB]
-Get:12 http://incoming.debian.org unstable/contrib kfreebsd-i386 Packages [36.4 kB]
-Get:13 http://incoming.debian.org  Release.gpg [836 B]
-Get:14 http://incoming.debian.org  Release [1141 B]
-Get:15 http://incoming.debian.org  Sources [16.2 kB]
-Get:16 http://incoming.debian.org  Packages [140 kB]
-Fetched 25.2 MB in 17s (1480 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: kfreebsd-i386
+Host Architecture: kfreebsd-i386
+Build Architecture: kfreebsd-i386
+
+I: NOTICE: Log filtering will replace 'build/bedtools-Y8NC95/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-Y8NC95' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-ki-sbuild-1392536265-70822' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://debian.netcologne.de unstable InRelease [199 kB]
+Get:2 http://debian.netcologne.de unstable/main Sources [9063 kB]
+Get:3 http://incoming.debian.org unstable InRelease [199 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://debian.netcologne.de unstable/contrib Sources [67.8 kB]
+Get:6 http://debian.netcologne.de unstable/non-free Sources [126 kB]
+Get:7 http://incoming.debian.org unstable/main Sources [9063 kB]
+Get:8 http://debian.netcologne.de unstable/main kfreebsd-i386 Packages [8180 kB]
+Get:9 http://debian.netcologne.de unstable/contrib kfreebsd-i386 Packages [49.5 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [67.8 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [126 kB]
+Get:12 http://incoming.debian.org unstable/main kfreebsd-i386 Packages [8180 kB]
+Get:13 http://incoming.debian.org unstable/contrib kfreebsd-i386 Packages [49.5 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [81.9 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1277 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [20 B]
+Get:17 http://incoming.debian.org buildd-unstable/main kfreebsd-i386 Packages [78.7 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib kfreebsd-i386 Packages [1044 B]
+Fetched 35.6 MB in 12s (2834 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -76,252 +88,261 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (710 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 3s (1182 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Ms2rRK/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 24 not upgraded.
+Need to get 0 B/822 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 11286 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, libc-bin, login, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-QCbzHf/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, freebsd-utils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.12)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.3)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.4)
-diffutils: already installed (1:3.2-7)
-dpkg: already installed (1.16.9)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-5)
-freebsd-utils: already installed (9.0+ds1-8)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-14)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.2)
-util-linux: already installed (2.20.1-5.2)
-libc6-dev: already installed (~*=PROVIDED=*=)
-gcc: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.7.2-1 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0
-  libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0 libssl1.0.0
-  libunistring0 libxml2 man-db mime-support po-debconf python-minimal
-  python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1
+  libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python
-  python-minimal python2.7 python2.7-minimal quilt zlib1g-dev
-0 upgraded, 32 newly installed, 0 to remove and 1 not upgraded.
-Need to get 16.5 MB of archives.
-After this operation, 44.3 MB of additional disk space will be used.
-Get:1 http://mirror-ubc.debian.org/debian/ unstable/main libncursesw5 kfreebsd-i386 5.9-10 [147 kB]
-Get:2 http://mirror-ubc.debian.org/debian/ unstable/main libpipeline1 kfreebsd-i386 1.2.2-1 [38.8 kB]
-Get:3 http://mirror-ubc.debian.org/debian/ unstable/main libssl1.0.0 kfreebsd-i386 1.0.1c-4 [1192 kB]
-Get:4 http://mirror-ubc.debian.org/debian/ unstable/main libasprintf0c2 kfreebsd-i386 0.18.1.1-9 [26.7 kB]
-Get:5 http://mirror-ubc.debian.org/debian/ unstable/main libmagic1 kfreebsd-i386 5.11-2 [204 kB]
-Get:6 http://mirror-ubc.debian.org/debian/ unstable/main libpcre3 kfreebsd-i386 1:8.31-1 [247 kB]
-Get:7 http://mirror-ubc.debian.org/debian/ unstable/main libsqlite3-0 kfreebsd-i386 3.7.14.1-1 [465 kB]
-Get:8 http://mirror-ubc.debian.org/debian/ unstable/main libxml2 kfreebsd-i386 2.8.0+dfsg1-6 [904 kB]
-Get:9 http://mirror-ubc.debian.org/debian/ unstable/main libffi5 kfreebsd-i386 3.0.10-3 [20.3 kB]
-Get:10 http://mirror-ubc.debian.org/debian/ unstable/main libglib2.0-0 kfreebsd-i386 2.33.12+really2.32.4-3 [1819 kB]
-Get:11 http://mirror-ubc.debian.org/debian/ unstable/main libcroco3 kfreebsd-i386 0.6.6-1 [133 kB]
-Get:12 http://mirror-ubc.debian.org/debian/ unstable/main libunistring0 kfreebsd-i386 0.9.3-5 [440 kB]
-Get:13 http://mirror-ubc.debian.org/debian/ unstable/main libgettextpo0 kfreebsd-i386 0.18.1.1-9 [140 kB]
-Get:14 http://mirror-ubc.debian.org/debian/ unstable/main bsdmainutils kfreebsd-i386 9.0.3 [204 kB]
-Get:15 http://mirror-ubc.debian.org/debian/ unstable/main groff-base kfreebsd-i386 1.21-9 [1095 kB]
-Get:16 http://mirror-ubc.debian.org/debian/ unstable/main man-db kfreebsd-i386 2.6.3-1 [1038 kB]
-Get:17 http://mirror-ubc.debian.org/debian/ unstable/main file kfreebsd-i386 5.11-2 [51.5 kB]
-Get:18 http://mirror-ubc.debian.org/debian/ unstable/main gettext-base kfreebsd-i386 0.18.1.1-9 [131 kB]
-Get:19 http://mirror-ubc.debian.org/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:20 http://mirror-ubc.debian.org/debian/ unstable/main python2.7-minimal kfreebsd-i386 2.7.3-5 [1647 kB]
-Get:21 http://mirror-ubc.debian.org/debian/ unstable/main python2.7 kfreebsd-i386 2.7.3-5 [2636 kB]
-Get:22 http://mirror-ubc.debian.org/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:23 http://mirror-ubc.debian.org/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:24 http://mirror-ubc.debian.org/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:25 http://mirror-ubc.debian.org/debian/ unstable/main html2text kfreebsd-i386 1.3.2a-15 [101 kB]
-Get:26 http://mirror-ubc.debian.org/debian/ unstable/main gettext kfreebsd-i386 0.18.1.1-9 [1894 kB]
-Get:27 http://mirror-ubc.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:28 http://mirror-ubc.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:29 http://mirror-ubc.debian.org/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:30 http://mirror-ubc.debian.org/debian/ unstable/main diffstat kfreebsd-i386 1.55-3 [29.0 kB]
-Get:31 http://mirror-ubc.debian.org/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:32 http://mirror-ubc.debian.org/debian/ unstable/main zlib1g-dev kfreebsd-i386 1:1.2.7.dfsg-13 [213 kB]
+  intltool-debian libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1
+  libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+0 upgraded, 33 newly installed, 0 to remove and 24 not upgraded.
+Need to get 14.2 MB/14.2 MB of archives.
+After this operation, 44.4 MB of additional disk space will be used.
+Get:1 http://debian.netcologne.de/debian/ unstable/main libncursesw5 kfreebsd-i386 5.9+20140118-1 [123 kB]
+Get:2 http://debian.netcologne.de/debian/ unstable/main libpipeline1 kfreebsd-i386 1.2.6-2 [24.7 kB]
+Get:3 http://debian.netcologne.de/debian/ unstable/main libssl1.0.0 kfreebsd-i386 1.0.1f-1 [950 kB]
+Get:4 http://debian.netcologne.de/debian/ unstable/main groff-base kfreebsd-i386 1.22.2-5 [1022 kB]
+Get:5 http://debian.netcologne.de/debian/ unstable/main bsdmainutils kfreebsd-i386 9.0.5 [205 kB]
+Get:6 http://debian.netcologne.de/debian/ unstable/main man-db kfreebsd-i386 2.6.6-1 [982 kB]
+Get:7 http://debian.netcologne.de/debian/ unstable/main libasprintf0c2 kfreebsd-i386 0.18.3.2-1 [29.2 kB]
+Get:8 http://debian.netcologne.de/debian/ unstable/main libmagic1 kfreebsd-i386 1:5.14-2 [218 kB]
+Get:9 http://debian.netcologne.de/debian/ unstable/main libsqlite3-0 kfreebsd-i386 3.8.3.1-1 [405 kB]
+Get:10 http://debian.netcologne.de/debian/ unstable/main libxml2 kfreebsd-i386 2.9.1+dfsg1-3 [904 kB]
+Get:11 http://debian.netcologne.de/debian/ unstable/main libffi6 kfreebsd-i386 3.0.13-12 [16.0 kB]
+Get:12 http://debian.netcologne.de/debian/ unstable/main libglib2.0-0 kfreebsd-i386 2.38.2-5 [2201 kB]
+Get:13 http://debian.netcologne.de/debian/ unstable/main libcroco3 kfreebsd-i386 0.6.8-2 [134 kB]
+Get:14 http://debian.netcologne.de/debian/ unstable/main libunistring0 kfreebsd-i386 0.9.3-5 [440 kB]
+Get:15 http://debian.netcologne.de/debian/ unstable/main file kfreebsd-i386 1:5.14-2 [53.8 kB]
+Get:16 http://debian.netcologne.de/debian/ unstable/main gettext-base kfreebsd-i386 0.18.3.2-1 [115 kB]
+Get:17 http://debian.netcologne.de/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:18 http://debian.netcologne.de/debian/ unstable/main libpython2.7-minimal kfreebsd-i386 2.7.6-5 [344 kB]
+Get:19 http://debian.netcologne.de/debian/ unstable/main python2.7-minimal kfreebsd-i386 2.7.6-5 [1011 kB]
+Get:20 http://debian.netcologne.de/debian/ unstable/main libpython2.7-stdlib kfreebsd-i386 2.7.6-5 [1778 kB]
+Get:21 http://debian.netcologne.de/debian/ unstable/main python2.7 kfreebsd-i386 2.7.6-5 [234 kB]
+Get:22 http://debian.netcologne.de/debian/ unstable/main python-minimal kfreebsd-i386 2.7.5-5 [39.2 kB]
+Get:23 http://debian.netcologne.de/debian/ unstable/main libpython-stdlib kfreebsd-i386 2.7.5-5 [18.7 kB]
+Get:24 http://debian.netcologne.de/debian/ unstable/main python kfreebsd-i386 2.7.5-5 [146 kB]
+Get:25 http://debian.netcologne.de/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:26 http://debian.netcologne.de/debian/ unstable/main gettext kfreebsd-i386 0.18.3.2-1 [1181 kB]
+Get:27 http://debian.netcologne.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:28 http://debian.netcologne.de/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:29 http://debian.netcologne.de/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:30 http://debian.netcologne.de/debian/ unstable/main diffstat kfreebsd-i386 1.58-1 [28.8 kB]
+Get:31 http://debian.netcologne.de/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:32 http://debian.netcologne.de/debian/ unstable/main zlib1g-dev kfreebsd-i386 1:1.2.8.dfsg-1 [215 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 16.5 MB in 4s (3989 kB/s)
+Fetched 14.2 MB in 2s (5353 kB/s)
 Selecting previously unselected package libncursesw5:kfreebsd-i386.
-(Reading database ... 11298 files and directories currently installed.)
-Unpacking libncursesw5:kfreebsd-i386 (from .../libncursesw5_5.9-10_kfreebsd-i386.deb) ...
+(Reading database ... 11286 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_kfreebsd-i386.deb ...
+Unpacking libncursesw5:kfreebsd-i386 (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:kfreebsd-i386.
-Unpacking libpipeline1:kfreebsd-i386 (from .../libpipeline1_1.2.2-1_kfreebsd-i386.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_kfreebsd-i386.deb ...
+Unpacking libpipeline1:kfreebsd-i386 (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:kfreebsd-i386.
-Unpacking libssl1.0.0:kfreebsd-i386 (from .../libssl1.0.0_1.0.1c-4_kfreebsd-i386.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_kfreebsd-i386.deb ...
+Unpacking libssl1.0.0:kfreebsd-i386 (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_kfreebsd-i386.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_kfreebsd-i386.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_kfreebsd-i386.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:kfreebsd-i386.
-Unpacking libasprintf0c2:kfreebsd-i386 (from .../libasprintf0c2_0.18.1.1-9_kfreebsd-i386.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_kfreebsd-i386.deb ...
+Unpacking libasprintf0c2:kfreebsd-i386 (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:kfreebsd-i386.
-Unpacking libmagic1:kfreebsd-i386 (from .../libmagic1_5.11-2_kfreebsd-i386.deb) ...
-Selecting previously unselected package libpcre3:kfreebsd-i386.
-Unpacking libpcre3:kfreebsd-i386 (from .../libpcre3_1%3a8.31-1_kfreebsd-i386.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_kfreebsd-i386.deb ...
+Unpacking libmagic1:kfreebsd-i386 (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:kfreebsd-i386.
-Unpacking libsqlite3-0:kfreebsd-i386 (from .../libsqlite3-0_3.7.14.1-1_kfreebsd-i386.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_kfreebsd-i386.deb ...
+Unpacking libsqlite3-0:kfreebsd-i386 (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:kfreebsd-i386.
-Unpacking libxml2:kfreebsd-i386 (from .../libxml2_2.8.0+dfsg1-6_kfreebsd-i386.deb) ...
-Selecting previously unselected package libffi5:kfreebsd-i386.
-Unpacking libffi5:kfreebsd-i386 (from .../libffi5_3.0.10-3_kfreebsd-i386.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_kfreebsd-i386.deb ...
+Unpacking libxml2:kfreebsd-i386 (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:kfreebsd-i386.
+Preparing to unpack .../libffi6_3.0.13-12_kfreebsd-i386.deb ...
+Unpacking libffi6:kfreebsd-i386 (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:kfreebsd-i386.
-Unpacking libglib2.0-0:kfreebsd-i386 (from .../libglib2.0-0_2.33.12+really2.32.4-3_kfreebsd-i386.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_kfreebsd-i386.deb ...
+Unpacking libglib2.0-0:kfreebsd-i386 (2.38.2-5) ...
 Selecting previously unselected package libcroco3:kfreebsd-i386.
-Unpacking libcroco3:kfreebsd-i386 (from .../libcroco3_0.6.6-1_kfreebsd-i386.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_kfreebsd-i386.deb ...
+Unpacking libcroco3:kfreebsd-i386 (0.6.8-2) ...
 Selecting previously unselected package libunistring0:kfreebsd-i386.
-Unpacking libunistring0:kfreebsd-i386 (from .../libunistring0_0.9.3-5_kfreebsd-i386.deb) ...
-Selecting previously unselected package libgettextpo0:kfreebsd-i386.
-Unpacking libgettextpo0:kfreebsd-i386 (from .../libgettextpo0_0.18.1.1-9_kfreebsd-i386.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_kfreebsd-i386.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_kfreebsd-i386.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_kfreebsd-i386.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_kfreebsd-i386.deb ...
+Unpacking libunistring0:kfreebsd-i386 (0.9.3-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-2_kfreebsd-i386.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_kfreebsd-i386.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_kfreebsd-i386.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_kfreebsd-i386.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-minimal:kfreebsd-i386.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_kfreebsd-i386.deb ...
+Unpacking libpython2.7-minimal:kfreebsd-i386 (2.7.6-5) ...
 Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_kfreebsd-i386.deb) ...
+Preparing to unpack .../python2.7-minimal_2.7.6-5_kfreebsd-i386.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
+Selecting previously unselected package libpython2.7-stdlib:kfreebsd-i386.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_kfreebsd-i386.deb ...
+Unpacking libpython2.7-stdlib:kfreebsd-i386 (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_kfreebsd-i386.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_kfreebsd-i386.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_kfreebsd-i386.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:kfreebsd-i386.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_kfreebsd-i386.deb ...
+Unpacking libpython-stdlib:kfreebsd-i386 (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_kfreebsd-i386.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_kfreebsd-i386.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_kfreebsd-i386.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_kfreebsd-i386.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_kfreebsd-i386.deb) ...
+Preparing to unpack .../diffstat_1.58-1_kfreebsd-i386.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:kfreebsd-i386.
-Unpacking zlib1g-dev:kfreebsd-i386 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_kfreebsd-i386.deb) ...
-Setting up libncursesw5:kfreebsd-i386 (5.9-10) ...
-Setting up libpipeline1:kfreebsd-i386 (1.2.2-1) ...
-Setting up libssl1.0.0:kfreebsd-i386 (1.0.1c-4) ...
-Setting up libasprintf0c2:kfreebsd-i386 (0.18.1.1-9) ...
-Setting up libmagic1:kfreebsd-i386 (5.11-2) ...
-Setting up libpcre3:kfreebsd-i386 (1:8.31-1) ...
-Setting up libsqlite3-0:kfreebsd-i386 (3.7.14.1-1) ...
-Setting up libxml2:kfreebsd-i386 (2.8.0+dfsg1-6) ...
-Setting up libffi5:kfreebsd-i386 (3.0.10-3) ...
-Setting up libglib2.0-0:kfreebsd-i386 (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:kfreebsd-i386 (0.6.6-1) ...
-Setting up libunistring0:kfreebsd-i386 (0.9.3-5) ...
-Setting up libgettextpo0:kfreebsd-i386 (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_kfreebsd-i386.deb ...
+Unpacking zlib1g-dev:kfreebsd-i386 (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:kfreebsd-i386 (5.9+20140118-1) ...
+Setting up libpipeline1:kfreebsd-i386 (1.2.6-2) ...
+Setting up libssl1.0.0:kfreebsd-i386 (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:kfreebsd-i386 (0.18.3.2-1) ...
+Setting up libmagic1:kfreebsd-i386 (1:5.14-2) ...
+Setting up libsqlite3-0:kfreebsd-i386 (3.8.3.1-1) ...
+Setting up libxml2:kfreebsd-i386 (2.9.1+dfsg1-3) ...
+Setting up libffi6:kfreebsd-i386 (3.0.13-12) ...
+Setting up libglib2.0-0:kfreebsd-i386 (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:kfreebsd-i386 (0.6.8-2) ...
+Setting up libunistring0:kfreebsd-i386 (0.9.3-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-minimal:kfreebsd-i386 (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up libpython2.7-stdlib:kfreebsd-i386 (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:kfreebsd-i386 (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:kfreebsd-i386 (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
-Checking correctness of dependencies...
-Kernel: GNU/kFreeBSD 8.1-1-686-smp kfreebsd-i386 (i686)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.7_4.7.2-4 gcc-4.7_4.7.2-4 kfreebsd-kernel-headers_0.82 libc0.1-dev_2.13-36 libstdc++6_4.7.2-4 libstdc++6-4.7-dev_4.7.2-4
-Package versions: apt_0.9.7.6 base-files_6.12 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.2 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.3 cpp_4:4.7.2-1 cpp-4.7_4.7.2-4 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.4 diffstat_1.55-3 diffutils_1:3.2-7 dpkg_1.16.9 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.1 [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:kfreebsd-i386 (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: GNU/kFreeBSD 9.0-2-686 kfreebsd-i386 (i386)
+Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6 g++-4.8_4.8.2-14 gcc-4.8_4.8.2-14 kfreebsd-kernel-headers_9.2~8 libc0.1-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14
+Package versions: apt_0.9.15 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2- [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -331,35 +352,56 @@ Package versions: apt_0.9.7.6 base-files_6.12 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-kfreebsd-i386-sbuild
+SCHROOT_CHROOT_NAME=sid-ki-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-ki-sbuild-1392536265-70822
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture kfreebsd-i386
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -371,16 +413,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/installation.rst
+Restoring docs/content/related-tools.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -393,41 +440,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -479,48 +570,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -532,6 +637,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -554,13 +661,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -570,31 +681,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -602,22 +726,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -629,20 +779,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -654,7 +810,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -675,7 +831,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -759,6 +915,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -773,7 +931,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -789,7 +947,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -800,6 +958,7 @@ dh_shlibdeps -pbedtools
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -808,65 +967,85 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_kfreebsd-i386.deb'.
- dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org> >../bedtools_2.17.0-1_kfreebsd-i386.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_kfreebsd-i386.deb'.
+ dpkg-genchanges -B -mkfreebsd-i386 Build Daemon (fils) <buildd_kfreebsd-i386-fils at buildd.debian.org> >../bedtools_2.19.0-1_kfreebsd-i386.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1135
+Build finished at 20140216-0743
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_kfreebsd-i386.changes:
+────────────────────────────────────────
 
-bedtools_2.17.0-1_kfreebsd-i386.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: kfreebsd-i386
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: kfreebsd-i386 Build Daemon (finzi) <buildd_kfreebsd-i386-finzi at buildd.debian.org>
+Maintainer: kfreebsd-i386 Build Daemon (fils) <buildd_kfreebsd-i386-fils at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- a580021ac7a012cc99441d883d77ef4b8bb477c0 448668 bedtools_2.17.0-1_kfreebsd-i386.deb
+ f3dea1f77dd0d423ce51e6cbb76b9510bc3425e8 556360 bedtools_2.19.0-1_kfreebsd-i386.deb
 Checksums-Sha256: 
- 0c44224ca9cace394e17afd82561b8ce67f9b21a1196f70df7904bc3a6e5ed57 448668 bedtools_2.17.0-1_kfreebsd-i386.deb
+ 135a9efb86e19e6bb56627d16a6387f7b09e4e865975e12b879728285312c5a8 556360 bedtools_2.19.0-1_kfreebsd-i386.deb
 Files: 
- f4cfed76ebb99b21e044f01301f9ef05 448668 science optional bedtools_2.17.0-1_kfreebsd-i386.deb
+ ba95898fdebae4c8e9abd5340b8ee719 556360 science optional bedtools_2.19.0-1_kfreebsd-i386.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_kfreebsd-i386.deb
+bedtools_2.19.0-1_kfreebsd-i386.deb
 ───────────────────────────────────
 
  new debian package, version 2.0.
- size 448668 bytes: control archive= 4119 bytes.
+ size 556360 bytes: control archive=6304 bytes.
       32 bytes,     1 lines      conffiles            
-     843 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     848 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: kfreebsd-i386
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1423
- Depends: libc0.1 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
+ Installed-Size: 2229
+ Depends: libc0.1 (>= 2.17-91), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
  Priority: optional
@@ -878,203 +1057,270 @@ bedtools_2.17.0-1_kfreebsd-i386.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/doc/bedtools/
--rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root         0 2012-11-04 11:31 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
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+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/map/t.bed
+-rw-r--r-- root/root     17540 2014-02-09 02:29 ./usr/share/bedtools/test/map/test-map.sh
+-rw-r--r-- root/root       483 2014-02-09 02:29 ./usr/share/bedtools/test/map/test.gff
+-rw-r--r-- root/root      1815 2014-02-09 02:29 ./usr/share/bedtools/test/map/test.vcf
+-rw-r--r-- root/root        61 2014-02-09 02:29 ./usr/share/bedtools/test/map/three_blocks_match.bed
+-rw-r--r-- root/root        64 2014-02-09 02:29 ./usr/share/bedtools/test/map/three_blocks_nomatch.bed
+-rw-r--r-- root/root      1825 2014-02-09 02:29 ./usr/share/bedtools/test/map/values.bam
+-rw-r--r-- root/root       148 2014-02-09 02:29 ./usr/share/bedtools/test/map/values.bed
+-rw-r--r-- root/root       186 2014-02-09 02:29 ./usr/share/bedtools/test/map/values2.bed
+-rw-r--r-- root/root       227 2014-02-09 02:29 ./usr/share/bedtools/test/map/values3.bed
+-rw-r--r-- root/root       256 2014-02-09 02:29 ./usr/share/bedtools/test/map/values4.bed
+-rw-r--r-- root/root       147 2014-02-09 02:29 ./usr/share/bedtools/test/map/values5.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/merge/
+-rw-r--r-- root/root        46 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.bed
+-rw-r--r-- root/root       147 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.full.bed
+-rw-r--r-- root/root        57 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.names.bed
+-rw-r--r-- root/root      4062 2014-02-09 02:29 ./usr/share/bedtools/test/merge/test-merge.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/
+-rw-r--r-- root/root        72 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/multicov.bed
+-rw-r--r-- root/root        96 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/one_block.bam.bai
+-rw-r--r-- root/root       162 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/one_block.sam
+-rw-r--r-- root/root      3842 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/test-multicov.sh
+-rw-r--r-- root/root        96 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
+-rw-r--r-- root/root       167 2014-02-09 02:29 ./usr/share/bedtools/test/multicov/two_blocks.sam
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/
+-rw-r--r-- root/root      3537 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/test-reldist.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/sample/
+-rw-r--r-- root/root      1972 2014-02-09 02:29 ./usr/share/bedtools/test/sample/human.hg19.genome
+-rw-r--r-- root/root      1083 2014-02-09 02:29 ./usr/share/bedtools/test/sample/sample_help_withoutVersion.txt
+-rw-r--r-- root/root      3890 2014-02-09 02:29 ./usr/share/bedtools/test/sample/test-sample.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/slop/
+-rw-r--r-- root/root        41 2014-02-09 02:29 ./usr/share/bedtools/test/slop/a.bed
+-rw-r--r-- root/root      3609 2014-02-09 02:29 ./usr/share/bedtools/test/slop/test-slop.sh
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/slop/tiny.genome
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/a.bed
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/b.bed
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/c.bed
+-rw-r--r-- root/root        18 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/d.bed
+-rw-r--r-- root/root      3077 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/test-subtract.sh
+-rw-r--r-- root/root      1453 2014-02-09 02:29 ./usr/share/bedtools/test/test.sh
+drwxr-xr-x root/root         0 2014-02-16 07:42 ./usr/bin/
+-rwxr-xr-x root/root        41 2014-02-16 07:42 ./usr/bin/annotateBed
+-rwxr-xr-x root/root        41 2014-02-16 07:42 ./usr/bin/bamToBed
+-rwxr-xr-x root/root        43 2014-02-16 07:42 ./usr/bin/bamToFastq
+-rwxr-xr-x root/root        44 2014-02-16 07:42 ./usr/bin/bed12ToBed6
+-rwxr-xr-x root/root        43 2014-02-16 07:42 ./usr/bin/bedpeToBam
+-rwxr-xr-x root/root        41 2014-02-16 07:42 ./usr/bin/bedToBam
+-rwxr-xr-x root/root        36 2014-02-16 07:42 ./usr/bin/bedToIgv
+-rwxr-xr-x root/root   1652916 2014-02-16 07:42 ./usr/bin/bedtools
+-rwxr-xr-x root/root        40 2014-02-16 07:42 ./usr/bin/closestBed
+-rwxr-xr-x root/root        40 2014-02-16 07:42 ./usr/bin/clusterBed
+-rwxr-xr-x root/root        43 2014-02-16 07:42 ./usr/bin/complementBed
+-rwxr-xr-x root/root        41 2014-02-16 07:42 ./usr/bin/coverageBed
+-rwxr-xr-x root/root        39 2014-02-16 07:42 ./usr/bin/expandCols
+-rwxr-xr-x root/root        41 2014-02-16 07:42 ./usr/bin/fastaFromBed
+-rwxr-xr-x root/root        38 2014-02-16 07:42 ./usr/bin/flankBed
+-rwxr-xr-x root/root        42 2014-02-16 07:42 ./usr/bin/genomeCoverageBed
+-rwxr-xr-x root/root        40 2014-02-16 07:42 ./usr/bin/getOverlap
+-rwxr-xr-x root/root        42 2014-02-16 07:42 ./usr/bin/intersectBed
+-rwxr-xr-x root/root        38 2014-02-16 07:42 ./usr/bin/linksBed
+-rwxr-xr-x root/root        36 2014-02-16 07:42 ./usr/bin/mapBed
+-rwxr-xr-x root/root        42 2014-02-16 07:42 ./usr/bin/maskFastaFromBed
+-rwxr-xr-x root/root        38 2014-02-16 07:42 ./usr/bin/mergeBed
+-rwxr-xr-x root/root        41 2014-02-16 07:42 ./usr/bin/multiBamCov
+-rwxr-xr-x root/root        43 2014-02-16 07:42 ./usr/bin/multiIntersectBed
+-rwxr-xr-x root/root        36 2014-02-16 07:42 ./usr/bin/nucBed
+-rwxr-xr-x root/root        42 2014-02-16 07:42 ./usr/bin/pairToBed
+-rwxr-xr-x root/root        43 2014-02-16 07:42 ./usr/bin/pairToPair
+-rwxr-xr-x root/root        39 2014-02-16 07:42 ./usr/bin/randomBed
+-rwxr-xr-x root/root        40 2014-02-16 07:42 ./usr/bin/shuffleBed
+-rwxr-xr-x root/root        37 2014-02-16 07:42 ./usr/bin/slopBed
+-rwxr-xr-x root/root        37 2014-02-16 07:42 ./usr/bin/sortBed
+-rwxr-xr-x root/root        41 2014-02-16 07:42 ./usr/bin/subtractBed
+-rwxr-xr-x root/root        36 2014-02-16 07:42 ./usr/bin/tagBam
+-rwxr-xr-x root/root        42 2014-02-16 07:42 ./usr/bin/unionBedGraphs
+-rwxr-xr-x root/root        39 2014-02-16 07:42 ./usr/bin/windowBed
+-rwxr-xr-x root/root        44 2014-02-16 07:42 ./usr/bin/windowMaker
+drwxr-xr-x root/root         0 2014-02-16 07:42 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 07:42 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-ki-sbuild-1352028575-77249/build/buildd-bedtools_2.17.0-1-kfreebsd-i386-CSLuXL
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: kfreebsd-i386
-Build-Space: 74924
-Build-Time: 244
+Build Architecture: kfreebsd-i386
+Build-Space: 103142
+Build-Time: 253
 Distribution: sid
-Install-Time: 52
-Job: bedtools_2.17.0-1
+Host Architecture: kfreebsd-i386
+Install-Time: 21
+Job: bedtools_2.19.0-1
+Machine Architecture: kfreebsd-i386
 Package: bedtools
-Package-Time: 358
-Source-Version: 2.17.0-1
-Space: 74924
+Package-Time: 319
+Source-Version: 2.19.0-1
+Space: 103142
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1135
-Build needed 00:05:58, 74924k disc space
-Signature with key 'B3DA9773' requested:
+Finished at 20140216-0743
+Build needed 00:05:19, 103142k disc space
+Signature with key '10E2E8E8' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_kfreebsd-i386.changes 10E2E8E8
+
+Successfully signed changes file
diff --git a/mips.log b/mips.log
index 430392e..47d9424 100644
--- a/mips.log
+++ b/mips.log
@@ -1,60 +1,74 @@
-From buildd at ball.debian.org Sun Nov 04 11:56:15 2012
+From buildd at ball.debian.org Sun Feb 16 09:52:20 2014
 Return-path: <buildd at ball.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at ball.debian.org>)
-	id 1TUyoJ-0004cZ-2I
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:56:15 +0000
+Received: from muffat.debian.org ([2607:f8f0:610:4000:6564:a62:ce0c:1392])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at ball.debian.org>)
+ id 1WEyOa-0001og-Gj
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 09:52:20 +0000
 Received: from ball.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d09])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=ball.debian.org, EMAIL=hostmaster at ball.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at ball.debian.org>)
-	id 1TUyoH-00077U-Rt
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:56:14 +0000
-Received: from buildd by ball.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at ball.debian.org>)
-	id 1TUyoG-0005ik-D0; Sun, 04 Nov 2012 11:56:12 +0000
-Date: Sun, 04 Nov 2012 11:56:12 +0000
-Message-Id: <E1TUyoG-0005ik-D0 at ball.debian.org>
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=ball.debian.org, EMAIL=hostmaster at ball.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at ball.debian.org>)
+ id 1WEyOY-0005i9-BZ
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 09:52:18 +0000
+Received: from buildd by ball.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at ball.debian.org>) id 1WEyOV-0002H2-DD
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 09:52:15 +0000
+Content-Transfer-Encoding: binary
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 09:52:14 +0000
 From: buildd on ball <buildd at ball.debian.org>
-To: logs at buildd.debian.org,buildd-porters at ball.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on mips (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
+To: logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on mips (dist=sid)
+Key-Id: 51B8FACC
+Message-Id: <E1WEyOV-0002H2-DD at ball.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on ball.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on ball.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (mips)                                   04 Nov 2012 11:28 ║
+║ bedtools 2.19.0-1 (mips)                                   16 Feb 2014 09:13 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: mips
-Get:1 http://ftp.de.debian.org unstable InRelease [219 kB]
-Get:2 http://incoming.debian.org unstable InRelease [219 kB]
-Get:3 http://ftp.de.debian.org unstable/main Sources [6381 kB]
-Ign http://incoming.debian.org  InRelease
-Get:4 http://incoming.debian.org unstable/main Sources [6381 kB]
-Get:5 http://ftp.de.debian.org unstable/contrib Sources [53.1 kB]
-Get:6 http://ftp.de.debian.org unstable/non-free Sources [101 kB]
-Get:7 http://ftp.de.debian.org unstable/main mips Packages [5997 kB]
-Get:8 http://incoming.debian.org unstable/contrib Sources [53.1 kB]
-Get:9 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:10 http://incoming.debian.org unstable/main mips Packages [5997 kB]
-Get:11 http://incoming.debian.org unstable/contrib mips Packages [37.3 kB]
-Get:12 http://incoming.debian.org  Release.gpg [836 B]
-Get:13 http://incoming.debian.org  Release [1141 B]
-Get:14 http://incoming.debian.org  Sources [16.2 kB]
-Get:15 http://incoming.debian.org  Packages [140 kB]
-Get:16 http://ftp.de.debian.org unstable/contrib mips Packages [37.3 kB]
-Fetched 25.7 MB in 1min 11s (358 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: mips
+Host Architecture: mips
+Build Architecture: mips
+
+I: NOTICE: Log filtering will replace 'build/bedtools-CQ56od/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-CQ56od' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-mips-sbuild-3e7f7e0e-9c1f-4c9a-b01b-7322f745fb74' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://debian.netcologne.de unstable InRelease [199 kB]
+Get:2 http://incoming.debian.org unstable InRelease [199 kB]
+Get:3 http://debian.netcologne.de unstable/main Sources [9063 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [9061 kB]
+Get:6 http://debian.netcologne.de unstable/contrib Sources [67.8 kB]
+Get:7 http://debian.netcologne.de unstable/non-free Sources [126 kB]
+Get:8 http://debian.netcologne.de unstable/main mips Packages [8543 kB]
+Get:9 http://debian.netcologne.de unstable/contrib mips Packages [50.3 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [67.8 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [126 kB]
+Get:12 http://incoming.debian.org unstable/main mips Packages [8543 kB]
+Get:13 http://incoming.debian.org unstable/contrib mips Packages [50.3 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [81.9 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1277 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [20 B]
+Get:17 http://incoming.debian.org buildd-unstable/main mips Packages [72.7 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib mips Packages [1044 B]
+Fetched 36.3 MB in 52s (695 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -72,255 +86,268 @@ Download source files with APT
 
 Reading package lists...
 Building dependency tree...
+Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (709 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian/ unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian/ unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian/ unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 2s (1550 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-Wvo7B6/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Removing negative dependencies: 
+Reading state information...
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 23 not upgraded.
+Need to get 0 B/816 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10955 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-jbEiDd/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-12)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
+Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
-  python-minimal python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
-  libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
-  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
-  po-debconf python python-minimal python2.7 python2.7-minimal quilt
-  zlib1g-dev
-0 upgraded, 33 newly installed, 0 to remove and 44 not upgraded.
-Need to get 16.4 MB of archives.
-After this operation, 47.9 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libncursesw5 mips 5.9-10 [126 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 mips 1.2.2-1 [37.1 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libssl1.0.0 mips 1.0.1c-4 [1121 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 mips 0.18.1.1-9 [26.7 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libmagic1 mips 5.11-2 [201 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libpcre3 mips 1:8.31-1 [250 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libsqlite3-0 mips 3.7.14.1-1 [473 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libxml2 mips 2.8.0+dfsg1-6 [869 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libffi5 mips 3.0.10-3 [23.0 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 mips 2.33.12+really2.32.4-3 [1685 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libcroco3 mips 0.6.6-1 [118 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libexpat1 mips 2.1.0-1 [145 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 mips 0.18.1.1-9 [139 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils mips 9.0.3 [208 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main groff-base mips 1.21-9 [1156 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main man-db mips 2.6.3-1 [1032 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main file mips 5.11-2 [51.5 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main gettext-base mips 0.18.1.1-9 [141 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main python2.7-minimal mips 2.7.3-5 [1615 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main python2.7 mips 2.7.3-5 [2605 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main html2text mips 1.3.2a-15 [103 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main gettext mips 0.18.1.1-9 [1918 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main diffstat mips 1.55-3 [28.7 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev mips 1:1.2.7.dfsg-13 [213 kB]
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+0 upgraded, 34 newly installed, 0 to remove and 23 not upgraded.
+Need to get 13.9 MB/13.9 MB of archives.
+After this operation, 48.8 MB of additional disk space will be used.
+Get:1 http://debian.netcologne.de/debian/ unstable/main libncursesw5 mips 5.9+20140118-1 [101 kB]
+Get:2 http://debian.netcologne.de/debian/ unstable/main libpipeline1 mips 1.2.6-2 [21.9 kB]
+Get:3 http://debian.netcologne.de/debian/ unstable/main libssl1.0.0 mips 1.0.1f-1 [850 kB]
+Get:4 http://debian.netcologne.de/debian/ unstable/main groff-base mips 1.22.2-5 [1153 kB]
+Get:5 http://debian.netcologne.de/debian/ unstable/main bsdmainutils mips 9.0.5 [210 kB]
+Get:6 http://debian.netcologne.de/debian/ unstable/main man-db mips 2.6.6-1 [970 kB]
+Get:7 http://debian.netcologne.de/debian/ unstable/main libasprintf0c2 mips 0.18.3.2-1 [29.2 kB]
+Get:8 http://debian.netcologne.de/debian/ unstable/main libmagic1 mips 1:5.14-2 [216 kB]
+Get:9 http://debian.netcologne.de/debian/ unstable/main libsqlite3-0 mips 3.8.3.1-1 [380 kB]
+Get:10 http://debian.netcologne.de/debian/ unstable/main libxml2 mips 2.9.1+dfsg1-3 [860 kB]
+Get:11 http://debian.netcologne.de/debian/ unstable/main libffi6 mips 3.0.13-12 [17.7 kB]
+Get:12 http://debian.netcologne.de/debian/ unstable/main libglib2.0-0 mips 2.38.2-5 [2051 kB]
+Get:13 http://debian.netcologne.de/debian/ unstable/main libcroco3 mips 0.6.8-2 [119 kB]
+Get:14 http://debian.netcologne.de/debian/ unstable/main libexpat1 mips 2.1.0-4 [142 kB]
+Get:15 http://debian.netcologne.de/debian/ unstable/main libunistring0 mips 0.9.3-5 [411 kB]
+Get:16 http://debian.netcologne.de/debian/ unstable/main libpython2.7-minimal mips 2.7.6-5 [347 kB]
+Get:17 http://debian.netcologne.de/debian/ unstable/main python2.7-minimal mips 2.7.6-5 [915 kB]
+Get:18 http://debian.netcologne.de/debian/ unstable/main file mips 1:5.14-2 [53.8 kB]
+Get:19 http://debian.netcologne.de/debian/ unstable/main gettext-base mips 0.18.3.2-1 [114 kB]
+Get:20 http://debian.netcologne.de/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:21 http://debian.netcologne.de/debian/ unstable/main libpython2.7-stdlib mips 2.7.6-5 [1735 kB]
+Get:22 http://debian.netcologne.de/debian/ unstable/main python2.7 mips 2.7.6-5 [234 kB]
+Get:23 http://debian.netcologne.de/debian/ unstable/main python-minimal mips 2.7.5-5 [39.2 kB]
+Get:24 http://debian.netcologne.de/debian/ unstable/main libpython-stdlib mips 2.7.5-5 [18.7 kB]
+Get:25 http://debian.netcologne.de/debian/ unstable/main python mips 2.7.5-5 [146 kB]
+Get:26 http://debian.netcologne.de/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:27 http://debian.netcologne.de/debian/ unstable/main gettext mips 0.18.3.2-1 [1148 kB]
+Get:28 http://debian.netcologne.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:29 http://debian.netcologne.de/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:30 http://debian.netcologne.de/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:31 http://debian.netcologne.de/debian/ unstable/main diffstat mips 1.58-1 [27.4 kB]
+Get:32 http://debian.netcologne.de/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:33 http://debian.netcologne.de/debian/ unstable/main zlib1g-dev mips 1:1.2.8.dfsg-1 [217 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 16.4 MB in 8s (2020 kB/s)
+Fetched 13.9 MB in 3s (3576 kB/s)
 Selecting previously unselected package libncursesw5:mips.
-(Reading database ... 10862 files and directories currently installed.)
-Unpacking libncursesw5:mips (from .../libncursesw5_5.9-10_mips.deb) ...
+(Reading database ... 10955 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_mips.deb ...
+Unpacking libncursesw5:mips (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:mips.
-Unpacking libpipeline1:mips (from .../libpipeline1_1.2.2-1_mips.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_mips.deb ...
+Unpacking libpipeline1:mips (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:mips.
-Unpacking libssl1.0.0:mips (from .../libssl1.0.0_1.0.1c-4_mips.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_mips.deb ...
+Unpacking libssl1.0.0:mips (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_mips.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_mips.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_mips.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:mips.
-Unpacking libasprintf0c2:mips (from .../libasprintf0c2_0.18.1.1-9_mips.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_mips.deb ...
+Unpacking libasprintf0c2:mips (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:mips.
-Unpacking libmagic1:mips (from .../libmagic1_5.11-2_mips.deb) ...
-Selecting previously unselected package libpcre3:mips.
-Unpacking libpcre3:mips (from .../libpcre3_1%3a8.31-1_mips.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_mips.deb ...
+Unpacking libmagic1:mips (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:mips.
-Unpacking libsqlite3-0:mips (from .../libsqlite3-0_3.7.14.1-1_mips.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_mips.deb ...
+Unpacking libsqlite3-0:mips (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:mips.
-Unpacking libxml2:mips (from .../libxml2_2.8.0+dfsg1-6_mips.deb) ...
-Selecting previously unselected package libffi5:mips.
-Unpacking libffi5:mips (from .../libffi5_3.0.10-3_mips.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_mips.deb ...
+Unpacking libxml2:mips (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:mips.
+Preparing to unpack .../libffi6_3.0.13-12_mips.deb ...
+Unpacking libffi6:mips (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:mips.
-Unpacking libglib2.0-0:mips (from .../libglib2.0-0_2.33.12+really2.32.4-3_mips.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_mips.deb ...
+Unpacking libglib2.0-0:mips (2.38.2-5) ...
 Selecting previously unselected package libcroco3:mips.
-Unpacking libcroco3:mips (from .../libcroco3_0.6.6-1_mips.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_mips.deb ...
+Unpacking libcroco3:mips (0.6.8-2) ...
 Selecting previously unselected package libexpat1:mips.
-Unpacking libexpat1:mips (from .../libexpat1_2.1.0-1_mips.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_mips.deb ...
+Unpacking libexpat1:mips (2.1.0-4) ...
 Selecting previously unselected package libunistring0:mips.
-Unpacking libunistring0:mips (from .../libunistring0_0.9.3-5_mips.deb) ...
-Selecting previously unselected package libgettextpo0:mips.
-Unpacking libgettextpo0:mips (from .../libgettextpo0_0.18.1.1-9_mips.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_mips.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_mips.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_mips.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_mips.deb ...
+Unpacking libunistring0:mips (0.9.3-5) ...
+Selecting previously unselected package libpython2.7-minimal:mips.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_mips.deb ...
+Unpacking libpython2.7-minimal:mips (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_mips.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_mips.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_mips.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_mips.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_mips.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_mips.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:mips.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_mips.deb ...
+Unpacking libpython2.7-stdlib:mips (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_mips.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_mips.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_mips.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:mips.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_mips.deb ...
+Unpacking libpython-stdlib:mips (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_mips.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_mips.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_mips.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_mips.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_mips.deb) ...
+Preparing to unpack .../diffstat_1.58-1_mips.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:mips.
-Unpacking zlib1g-dev:mips (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_mips.deb) ...
-Setting up libncursesw5:mips (5.9-10) ...
-Setting up libpipeline1:mips (1.2.2-1) ...
-Setting up libssl1.0.0:mips (1.0.1c-4) ...
-Setting up libasprintf0c2:mips (0.18.1.1-9) ...
-Setting up libmagic1:mips (5.11-2) ...
-Setting up libpcre3:mips (1:8.31-1) ...
-Setting up libsqlite3-0:mips (3.7.14.1-1) ...
-Setting up libxml2:mips (2.8.0+dfsg1-6) ...
-Setting up libffi5:mips (3.0.10-3) ...
-Setting up libglib2.0-0:mips (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:mips (0.6.6-1) ...
-Setting up libexpat1:mips (2.1.0-1) ...
-Setting up libunistring0:mips (0.9.3-5) ...
-Setting up libgettextpo0:mips (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_mips.deb ...
+Unpacking zlib1g-dev:mips (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:mips (5.9+20140118-1) ...
+Setting up libpipeline1:mips (1.2.6-2) ...
+Setting up libssl1.0.0:mips (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:mips (0.18.3.2-1) ...
+Setting up libmagic1:mips (1:5.14-2) ...
+Setting up libsqlite3-0:mips (3.8.3.1-1) ...
+Setting up libxml2:mips (2.9.1+dfsg1-3) ...
+Setting up libffi6:mips (3.0.13-12) ...
+Setting up libglib2.0-0:mips (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:mips (0.6.8-2) ...
+Setting up libexpat1:mips (2.1.0-4) ...
+Setting up libunistring0:mips (0.9.3-5) ...
+Setting up libpython2.7-minimal:mips (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:mips (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:mips (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:mips (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mips (mips64)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.8 g++-4.6_4.6.3-9 gcc-4.6_4.6.3-9 libc6-dev_2.13-35 libstdc++6_4.7.1-7 libstdc++6-4.6-dev_4.6.3-9 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-9 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.8 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.1 [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:mips (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-sb1-bcm91250a mips (mips64)
+Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6 g++-4.8_4.8.2-14 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 linux-libc-dev_3.12.9-1
+Package versions: apt_0.9.15 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2-7  [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -330,35 +357,56 @@ Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-mips-sbuild
+SCHROOT_CHROOT_NAME=sid-mips-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-mips-sbuild-3e7f7e0e-9c1f-4c9a-b01b-7322f745fb74
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture mips
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -370,16 +418,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/installation.rst
+Restoring docs/content/related-tools.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -392,41 +445,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -478,48 +575,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -531,6 +642,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -553,13 +666,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -569,31 +686,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -601,22 +731,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -628,20 +784,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -653,7 +815,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -674,7 +836,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -758,6 +920,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -772,7 +936,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -788,7 +952,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-mips-IQCOA2/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -808,64 +972,84 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_mips.deb'.
- dpkg-genchanges -B -mDebian Build Daemon <buildd_mips-ball at buildd.debian.org> >../bedtools_2.17.0-1_mips.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_mips.deb'.
+ dpkg-genchanges -B -mDebian Build Daemon <buildd_mips-ball at buildd.debian.org> >../bedtools_2.19.0-1_mips.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1156
+Build finished at 20140216-0952
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_mips.changes:
+───────────────────────────────
 
-bedtools_2.17.0-1_mips.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: mips
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
 Maintainer: Debian Build Daemon <buildd_mips-ball at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 67ca843836063970cba2c984f9ad08bd52c1abf0 371766 bedtools_2.17.0-1_mips.deb
+ 5f4094f2d84043495b28230ba3a4fb200f46aa21 503510 bedtools_2.19.0-1_mips.deb
 Checksums-Sha256: 
- 1eae5c9e021309048a7a40bc1a1177549f0a79a35e2bc12549d23a23aaa7981f 371766 bedtools_2.17.0-1_mips.deb
+ e9552a23930ece6800d6db2bec9ca973c0fe06b2181bbcff29b761e650063f08 503510 bedtools_2.19.0-1_mips.deb
 Files: 
- 2f469fdf8a63130641e56b1bca9e425d 371766 science optional bedtools_2.17.0-1_mips.deb
+ dd3c46886ad303d6d7e7961f64ac155c 503510 science optional bedtools_2.19.0-1_mips.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_mips.deb
+bedtools_2.19.0-1_mips.deb
 ──────────────────────────
 
  new debian package, version 2.0.
- size 371766 bytes: control archive= 4114 bytes.
+ size 503510 bytes: control archive=6298 bytes.
       32 bytes,     1 lines      conffiles            
-     832 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     833 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: mips
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1673
+ Installed-Size: 2810
  Depends: libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
@@ -878,262 +1062,344 @@ bedtools_2.17.0-1_mips.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
-
-drwxr-xr-x root/root         0 2012-11-04 11:55 ./
-drwxr-xr-x root/root         0 2012-11-04 11:55 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:55 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:55 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 11:55 ./usr/share/doc/bedtools/
--rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root         0 2012-11-04 11:55 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:55 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
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--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
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--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
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--rwxr-xr-x root/root        44 2012-11-04 11:55 ./usr/bin/windowMaker
--rwxr-xr-x root/root        38 2012-11-04 11:55 ./usr/bin/linksBed
--rwxr-xr-x root/root        36 2012-11-04 11:55 ./usr/bin/bedToIgv
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--rwxr-xr-x root/root        43 2012-11-04 11:55 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        40 2012-11-04 11:55 ./usr/bin/shuffleBed
--rwxr-xr-x root/root        40 2012-11-04 11:55 ./usr/bin/clusterBed
--rwxr-xr-x root/root        41 2012-11-04 11:55 ./usr/bin/coverageBed
--rwxr-xr-x root/root        42 2012-11-04 11:55 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        38 2012-11-04 11:55 ./usr/bin/mergeBed
--rwxr-xr-x root/root        41 2012-11-04 11:55 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root        37 2012-11-04 11:55 ./usr/bin/sortBed
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--rwxr-xr-x root/root        41 2012-11-04 11:55 ./usr/bin/multiBamCov
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--rwxr-xr-x root/root        41 2012-11-04 11:55 ./usr/bin/bedToBam
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--rwxr-xr-x root/root        43 2012-11-04 11:55 ./usr/bin/pairToPair
--rwxr-xr-x root/root        36 2012-11-04 11:55 ./usr/bin/nucBed
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--rw-r--r-- root/root       638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
+  The groupBy utility is distributed in the filo package.
+
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+-rw-r--r-- root/root       167 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/two_blocks.sam
+-rw-r--r-- root/root        76 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/b.bed
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
+-rw-r--r-- root/root      1804 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_match.bam
+-rw-r--r-- root/root       162 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/one_block.sam
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
+-rw-r--r-- root/root        17 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed4.bed
+-rw-r--r-- root/root       122 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/chromOrderA.bed
+-rw-r--r-- root/root      1051 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/queryUnmappedMateMappedCoordsInvalid.bam
+-rw-r--r-- root/root      1971 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/human.hg19.vSort.genome
+-rw-r--r-- root/root     10384 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_withLargeHeader_gzipped.bed.gz
+-rw-r--r-- root/root        85 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_bgzipped.bed.gz
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_gzipped.bed.gz
+-rw-r--r-- root/root      1972 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/human.hg19.genome
+-rw-r--r-- root/root      2911 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_with_bothUnmapped.bam
+-rw-r--r-- root/root        54 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/two_blocks_partial.bed
+-rw-r--r-- root/root      1739 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a.bam
+-rw-r--r-- root/root       544 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/gdc_exp
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed3.bed
+-rw-r--r-- root/root       176 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks.sam
+-rw-r--r-- root/root        24 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed6.strand.bed
+-rw-r--r-- root/root      1735 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/aVSb.bam
+-rw-r--r-- root/root        44 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/recordsOutOfOrder.bed
+-rw-r--r-- root/root        22 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed5.bed
+-rw-r--r-- root/root        48 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed6.strand2.bed
+-rw-r--r-- root/root     10624 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_withLargeHeader_bgzipped.bed.gz
+-rw-r--r-- root/root        26 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/j1.bed
+-rw-r--r-- root/root    202930 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/aWithHeaderVsB.txt
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/d.bed
+-rw-r--r-- root/root        13 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/gdc_one.bed
+-rw-r--r-- root/root        60 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
+-rw-r--r-- root/root       204 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/gdc.bam
+-rw-r--r-- root/root        38 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a.bed
+-rw-r--r-- root/root        18 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/c.bed
+-rwxr-xr-x root/root      8883 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/performanceTest.sh
+-rw-r--r-- root/root       746 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/gdc.gff
+-rw-r--r-- root/root    202928 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_withLargeHeader.bed
+-rw-r--r-- root/root       244 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/chromOrderB.bed
+-rw-r--r-- root/root      2564 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/oneUnmapped.bam
+-rwxr-xr-x root/root     22827 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/new_test-intersect.sh
+-rw-r--r-- root/root      1805 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/two_blocks_partial.bam
+-rw-r--r-- root/root        52 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bedplus.bed
+-rw-r--r-- root/root        52 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/chromsOutOfOrder.bed
+-rw-r--r-- root/root       255 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/slop/
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/slop/tiny.genome
+-rw-r--r-- root/root      3609 2014-02-09 02:29 ./usr/share/bedtools/test/slop/test-slop.sh
+-rw-r--r-- root/root        41 2014-02-09 02:29 ./usr/share/bedtools/test/slop/a.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/general/
+-rw-r--r-- root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/general/empty.bed
+-rw-r--r-- root/root        53 2014-02-09 02:29 ./usr/share/bedtools/test/general/non-empty.bed.gz
+-rw-r--r-- root/root      2847 2014-02-09 02:29 ./usr/share/bedtools/test/general/test-general.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/
+-rw-r--r-- root/root       162 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/two_blocks.sam
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
+-rw-r--r-- root/root       156 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/one_block.sam
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
+-rw-r--r-- root/root       142 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
+-rw-r--r-- root/root       171 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/three_blocks.sam
+-rw-r--r-- root/root        60 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
+-rw-r--r-- root/root      3408 2014-02-09 02:29 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
+drwxr-xr-x root/root         0 2014-02-16 09:51 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 09:51 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-mips-sbuild-68550864-1670-492e-8259-3667f3102a25/build/buildd-bedtools_2.17.0-1-mips-IQCOA2
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: mips
-Build-Space: 80832
-Build-Time: 1385
+Build Architecture: mips
+Build-Space: 104620
+Build-Time: 1988
 Distribution: sid
-Install-Time: 150
-Job: bedtools_2.17.0-1
+Host Architecture: mips
+Install-Time: 128
+Job: bedtools_2.19.0-1
+Machine Architecture: mips
 Package: bedtools
-Package-Time: 1667
-Source-Version: 2.17.0-1
-Space: 80832
+Package-Time: 2318
+Source-Version: 2.19.0-1
+Space: 104620
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1156
-Build needed 00:27:47, 80832k disc space
-Signature with key 'E348DA45' requested:
-
-From buildd at mayer.debian.org Sun Nov 04 11:55:06 2012
-Return-path: <buildd at mayer.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
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-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
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-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
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-Date: Sun, 04 Nov 2012 11:55:00 +0000
-Message-Id: <E1TUyn6-0006rb-Eo at mayer.debian.org>
-From: buildd on mayer <buildd at mayer.debian.org>
+Finished at 20140216-0952
+Build needed 00:38:38, 104620k disc space
+Signature with key '51B8FACC' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_mips.changes 51B8FACC
+
+Successfully signed changes file
+From buildd at rem.debian.org Sun Feb 16 08:16:15 2014
+Return-path: <buildd at rem.debian.org>
+Received: from mailly.debian.org ([2001:41b8:202:deb:6564:a62:52c3:4b72])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at rem.debian.org>)
+ id 1WEwtb-00007l-7K
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+Received: from rem.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d06])
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+ CN=rem.debian.org, EMAIL=hostmaster at rem.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
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+Received: from buildd by rem.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at rem.debian.org>) id 1WEwtY-00035b-CA
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 08:16:12 +0000
+Content-Transfer-Encoding: binary
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 08:16:11 +0000
+From: buildd on rem <buildd at rem.debian.org>
 To: logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on mipsel (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
+Subject: Log for successful build of bedtools_2.19.0-1 on mipsel (dist=sid)
+Key-Id: B1DFE6AC
+Message-Id: <E1WEwtY-00035b-CA at rem.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on rem.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (mipsel)                                 04 Nov 2012 11:28 ║
+║ bedtools 2.19.0-1 (mipsel)                                 16 Feb 2014 07:39 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: mipsel
-Hit http://debian.oregonstate.edu sid InRelease
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org  InRelease
-Get:1 http://incoming.debian.org  Release.gpg [836 B]
-Get:2 http://incoming.debian.org  Release [1141 B]
-Hit http://debian.oregonstate.edu sid/main Sources
-Hit http://debian.oregonstate.edu sid/contrib Sources
-Hit http://debian.oregonstate.edu sid/main mipsel Packages
-Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main mipsel Packages
-Hit http://incoming.debian.org sid/contrib mipsel Packages
-Get:3 http://incoming.debian.org  Sources [16.2 kB]
-Get:4 http://incoming.debian.org  Packages [140 kB]
-Fetched 158 kB in 2s (75.2 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: mipsel
+Host Architecture: mipsel
+Build Architecture: mipsel
+
+I: NOTICE: Log filtering will replace 'build/bedtools-l8Xedm/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-l8Xedm' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-mipsel-sbuild-042d0248-b9a3-4ec4-92c8-ccfd564890a5' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://ftp.de.debian.org unstable InRelease [199 kB]
+Get:2 http://incoming.debian.org unstable InRelease [199 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [7001 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [58.1 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [105 kB]
+Get:8 http://ftp.de.debian.org unstable/main mipsel Packages [6394 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib mipsel Packages [42.8 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:12 http://incoming.debian.org unstable/main mipsel Packages [6394 kB]
+Get:13 http://incoming.debian.org unstable/contrib mipsel Packages [42.8 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main mipsel Packages [72.7 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib mipsel Packages [1076 B]
+Fetched 27.8 MB in 41s (670 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -1153,214 +1419,266 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (791 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 3s (1231 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-1p81HI/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 23 not upgraded.
+Need to get 0 B/816 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10973 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-kMpdj4/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-14)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  diffstat file gettext gettext-base groff-base html2text intltool-debian
-  libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0 libglib2.0-0
-  libmagic1 libncursesw5 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0
-  libxml2 man-db mime-support po-debconf python-minimal python2.7
-  python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt zlib1g-dev
 Suggested packages:
-  devscripts dh-make gettext-doc groff less www-browser libmail-box-perl
-  python-doc python-tk python2.7-doc binfmt-support procmail graphviz
-  default-mta mail-transport-agent
+  wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
+  www-browser libmail-box-perl python-doc python-tk python2.7-doc
+  binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
-  cdbs debhelper diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpipeline1 libsqlite3-0 libssl1.0.0
-  libunistring0 libxml2 man-db mime-support po-debconf python python-minimal
-  python2.7 python2.7-minimal quilt zlib1g-dev
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+0 upgraded, 34 newly installed, 0 to remove and 23 not upgraded.
+Need to get 14.0 MB/14.0 MB of archives.
+After this operation, 48.8 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libncursesw5 mipsel 5.9+20140118-1 [102 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 mipsel 1.2.6-2 [22.1 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libssl1.0.0 mipsel 1.0.1f-1 [857 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main groff-base mipsel 1.22.2-5 [1141 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils mipsel 9.0.5 [211 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main man-db mipsel 2.6.6-1 [969 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.3.2-1 [29.2 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libmagic1 mipsel 1:5.14-2 [217 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libsqlite3-0 mipsel 3.8.3.1-1 [384 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libxml2 mipsel 2.9.1+dfsg1-3 [860 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libffi6 mipsel 3.0.13-12 [17.6 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.38.2-5 [2064 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.8-2 [120 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libexpat1 mipsel 2.1.0-4 [141 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libpython2.7-minimal mipsel 2.7.6-5 [347 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main python2.7-minimal mipsel 2.7.6-5 [927 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main file mipsel 1:5.14-2 [53.9 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main gettext-base mipsel 0.18.3.2-1 [114 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpython2.7-stdlib mipsel 2.7.6-5 [1741 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main python2.7 mipsel 2.7.6-5 [234 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main python-minimal mipsel 2.7.5-5 [39.2 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libpython-stdlib mipsel 2.7.5-5 [18.7 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main python mipsel 2.7.5-5 [146 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main gettext mipsel 0.18.3.2-1 [1151 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main diffstat mipsel 1.58-1 [27.6 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.8.dfsg-1 [216 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 31 newly installed, 0 to remove and 22 not upgraded.
-Need to get 0 B/15.8 MB of archives.
-After this operation, 46.8 MB of additional disk space will be used.
+Fetched 14.0 MB in 4s (3265 kB/s)
 Selecting previously unselected package libncursesw5:mipsel.
-(Reading database ... 10941 files and directories currently installed.)
-Unpacking libncursesw5:mipsel (from .../libncursesw5_5.9-10_mipsel.deb) ...
+(Reading database ... 10973 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_mipsel.deb ...
+Unpacking libncursesw5:mipsel (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:mipsel.
-Unpacking libpipeline1:mipsel (from .../libpipeline1_1.2.2-1_mipsel.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_mipsel.deb ...
+Unpacking libpipeline1:mipsel (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:mipsel.
-Unpacking libssl1.0.0:mipsel (from .../libssl1.0.0_1.0.1c-4_mipsel.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_mipsel.deb ...
+Unpacking libssl1.0.0:mipsel (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_mipsel.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_mipsel.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_mipsel.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:mipsel.
-Unpacking libasprintf0c2:mipsel (from .../libasprintf0c2_0.18.1.1-9_mipsel.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_mipsel.deb ...
+Unpacking libasprintf0c2:mipsel (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:mipsel.
-Unpacking libmagic1:mipsel (from .../libmagic1_5.11-2_mipsel.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_mipsel.deb ...
+Unpacking libmagic1:mipsel (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:mipsel.
-Unpacking libsqlite3-0:mipsel (from .../libsqlite3-0_3.7.14.1-1_mipsel.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_mipsel.deb ...
+Unpacking libsqlite3-0:mipsel (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:mipsel.
-Unpacking libxml2:mipsel (from .../libxml2_2.8.0+dfsg1-6_mipsel.deb) ...
-Selecting previously unselected package libffi5:mipsel.
-Unpacking libffi5:mipsel (from .../libffi5_3.0.10-3_mipsel.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_mipsel.deb ...
+Unpacking libxml2:mipsel (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:mipsel.
+Preparing to unpack .../libffi6_3.0.13-12_mipsel.deb ...
+Unpacking libffi6:mipsel (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:mipsel.
-Unpacking libglib2.0-0:mipsel (from .../libglib2.0-0_2.33.12+really2.32.4-3_mipsel.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_mipsel.deb ...
+Unpacking libglib2.0-0:mipsel (2.38.2-5) ...
 Selecting previously unselected package libcroco3:mipsel.
-Unpacking libcroco3:mipsel (from .../libcroco3_0.6.6-1_mipsel.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_mipsel.deb ...
+Unpacking libcroco3:mipsel (0.6.8-2) ...
 Selecting previously unselected package libexpat1:mipsel.
-Unpacking libexpat1:mipsel (from .../libexpat1_2.1.0-1_mipsel.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_mipsel.deb ...
+Unpacking libexpat1:mipsel (2.1.0-4) ...
 Selecting previously unselected package libunistring0:mipsel.
-Unpacking libunistring0:mipsel (from .../libunistring0_0.9.3-5_mipsel.deb) ...
-Selecting previously unselected package libgettextpo0:mipsel.
-Unpacking libgettextpo0:mipsel (from .../libgettextpo0_0.18.1.1-9_mipsel.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_mipsel.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_mipsel.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_mipsel.deb ...
+Unpacking libunistring0:mipsel (0.9.3-5) ...
+Selecting previously unselected package libpython2.7-minimal:mipsel.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_mipsel.deb ...
+Unpacking libpython2.7-minimal:mipsel (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_mipsel.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-2_mipsel.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_mipsel.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_mipsel.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_mipsel.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_mipsel.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:mipsel.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_mipsel.deb ...
+Unpacking libpython2.7-stdlib:mipsel (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_mipsel.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_mipsel.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_mipsel.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:mipsel.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_mipsel.deb ...
+Unpacking libpython-stdlib:mipsel (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_mipsel.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_mipsel.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_mipsel.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_mipsel.deb) ...
+Preparing to unpack .../diffstat_1.58-1_mipsel.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:mipsel.
-Unpacking zlib1g-dev:mipsel (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_mipsel.deb) ...
-Setting up libncursesw5:mipsel (5.9-10) ...
-Setting up libpipeline1:mipsel (1.2.2-1) ...
-Setting up libssl1.0.0:mipsel (1.0.1c-4) ...
-Setting up libasprintf0c2:mipsel (0.18.1.1-9) ...
-Setting up libmagic1:mipsel (5.11-2) ...
-Setting up libsqlite3-0:mipsel (3.7.14.1-1) ...
-Setting up libxml2:mipsel (2.8.0+dfsg1-6) ...
-Setting up libffi5:mipsel (3.0.10-3) ...
-Setting up libglib2.0-0:mipsel (2.33.12+really2.32.4-3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_mipsel.deb ...
+Unpacking zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:mipsel (5.9+20140118-1) ...
+Setting up libpipeline1:mipsel (1.2.6-2) ...
+Setting up libssl1.0.0:mipsel (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:mipsel (0.18.3.2-1) ...
+Setting up libmagic1:mipsel (1:5.14-2) ...
+Setting up libsqlite3-0:mipsel (3.8.3.1-1) ...
+Setting up libxml2:mipsel (2.9.1+dfsg1-3) ...
+Setting up libffi6:mipsel (3.0.13-12) ...
+Setting up libglib2.0-0:mipsel (2.38.2-5) ...
 No schema files found: doing nothing.
-Setting up libcroco3:mipsel (0.6.6-1) ...
-Setting up libexpat1:mipsel (2.1.0-1) ...
+Setting up libcroco3:mipsel (0.6.8-2) ...
+Setting up libexpat1:mipsel (2.1.0-4) ...
 Setting up libunistring0:mipsel (0.9.3-5) ...
-Setting up libgettextpo0:mipsel (0.18.1.1-9) ...
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up libpython2.7-minimal:mipsel (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:mipsel (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:mipsel (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:mipsel (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.3-12 gcc-4.6_4.6.3-12 libc6-dev_2.13-35 libstdc++6_4.7.2-4 libstdc++6-4.6-dev_4.6.3-12 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.3-12 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5. [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6 g++-4.8_4.8.2-14 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 linux-libc-dev_3.12.9-1
+Package versions: apt_0.9.15 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2-7  [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -1370,35 +1688,56 @@ Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-mipsel-sbuild
+SCHROOT_CHROOT_NAME=sid-mipsel-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-mipsel-sbuild-042d0248-b9a3-4ec4-92c8-ccfd564890a5
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture mipsel
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -1410,16 +1749,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring docs/content/related-tools.rst
+Restoring docs/content/installation.rst
+Restoring README.md
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -1432,41 +1776,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -1518,48 +1906,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -1571,6 +1973,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -1593,13 +1997,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -1609,31 +2017,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -1641,22 +2062,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -1668,20 +2115,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -1693,7 +2146,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -1714,7 +2167,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -1798,6 +2251,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -1812,7 +2267,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -1828,7 +2283,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -1839,7 +2294,6 @@ dh_shlibdeps -pbedtools
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -1848,65 +2302,85 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../bedtools_2.17.0-1_mipsel.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../bedtools_2.19.0-1_mipsel.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1154
+Build finished at 20140216-0815
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_mipsel.changes:
+─────────────────────────────────
 
-bedtools_2.17.0-1_mipsel.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: mipsel
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Maintainer: mipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 5382b9047b1e8b599dd2f3b3c19ddfbfb9a69f53 380730 bedtools_2.17.0-1_mipsel.deb
+ 9cddb2857606f711b0bea192bf1fb622ed496272 514128 bedtools_2.19.0-1_mipsel.deb
 Checksums-Sha256: 
- fd2f0467716f7b441625457b79004062282bc9823e989bf42da7349d969cad4d 380730 bedtools_2.17.0-1_mipsel.deb
+ af0636381257720eacc89a562c65434358c64da8074b4b0526c46de6c1e9c860 514128 bedtools_2.19.0-1_mipsel.deb
 Files: 
- 7b9993857e35e2722c06d686b487a0d0 380730 science optional bedtools_2.17.0-1_mipsel.deb
+ fd0d4eabc97c1a076888dde4edd4897d 514128 science optional bedtools_2.19.0-1_mipsel.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_mipsel.deb
+bedtools_2.19.0-1_mipsel.deb
 ────────────────────────────
 
  new debian package, version 2.0.
- size 380730 bytes: control archive= 4110 bytes.
+ size 514128 bytes: control archive=6267 bytes.
       32 bytes,     1 lines      conffiles            
-     834 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     833 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: mipsel
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1673
- Depends: libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
+ Installed-Size: 2810
+ Depends: libc6 (>= 2.2), libgcc1 (>= 1:4.3), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
  Priority: optional
@@ -1918,270 +2392,270 @@ bedtools_2.17.0-1_mipsel.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
-
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/doc/bedtools/
--rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:54 ./usr/bin/
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/annotateBed
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/bamToBed
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/bamToFastq
--rwxr-xr-x root/root        44 2012-11-04 11:53 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/bedToBam
--rwxr-xr-x root/root        36 2012-11-04 11:53 ./usr/bin/bedToIgv
--rwxr-xr-x root/root   1506976 2012-11-04 11:53 ./usr/bin/bedtools
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/closestBed
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/clusterBed
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/complementBed
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/coverageBed
--rwxr-xr-x root/root        39 2012-11-04 11:53 ./usr/bin/expandCols
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root        38 2012-11-04 11:53 ./usr/bin/flankBed
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/getOverlap
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/intersectBed
--rwxr-xr-x root/root        38 2012-11-04 11:53 ./usr/bin/linksBed
--rwxr-xr-x root/root        36 2012-11-04 11:53 ./usr/bin/mapBed
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        38 2012-11-04 11:53 ./usr/bin/mergeBed
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/multiBamCov
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        36 2012-11-04 11:53 ./usr/bin/nucBed
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/pairToBed
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/pairToPair
--rwxr-xr-x root/root        39 2012-11-04 11:53 ./usr/bin/randomBed
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/shuffleBed
--rwxr-xr-x root/root        37 2012-11-04 11:53 ./usr/bin/slopBed
--rwxr-xr-x root/root        37 2012-11-04 11:53 ./usr/bin/sortBed
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/subtractBed
--rwxr-xr-x root/root        36 2012-11-04 11:53 ./usr/bin/tagBam
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root        39 2012-11-04 11:53 ./usr/bin/windowBed
--rwxr-xr-x root/root        44 2012-11-04 11:53 ./usr/bin/windowMaker
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./etc/
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./etc/bash_completion.d/
--rw-r--r-- root/root       638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
+  The groupBy utility is distributed in the filo package.
+
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+-rw-r--r-- root/root      5392 2014-02-15 10:24 ./usr/share/doc/bedtools/copyright
+-rw-r--r-- root/root     14454 2014-02-09 02:29 ./usr/share/doc/bedtools/changelog.gz
+-rw-r--r-- root/root      1350 2014-02-15 10:39 ./usr/share/doc/bedtools/changelog.Debian.gz
+-rw-r--r-- root/root      3288 2014-02-16 07:42 ./usr/share/doc/bedtools/README.md
+drwxr-xr-x root/root         0 2014-02-16 08:15 ./usr/bin/
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/maskFastaFromBed
+-rwxr-xr-x root/root        40 2014-02-16 08:14 ./usr/bin/shuffleBed
+-rwxr-xr-x root/root        37 2014-02-16 08:14 ./usr/bin/slopBed
+-rwxr-xr-x root/root        40 2014-02-16 08:14 ./usr/bin/getOverlap
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/bamToBed
+-rwxr-xr-x root/root        44 2014-02-16 08:14 ./usr/bin/windowMaker
+-rwxr-xr-x root/root   2134556 2014-02-16 08:15 ./usr/bin/bedtools
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/pairToPair
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/bamToFastq
+-rwxr-xr-x root/root        39 2014-02-16 08:14 ./usr/bin/windowBed
+-rwxr-xr-x root/root        40 2014-02-16 08:14 ./usr/bin/clusterBed
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/genomeCoverageBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/subtractBed
+-rwxr-xr-x root/root        40 2014-02-16 08:14 ./usr/bin/closestBed
+-rwxr-xr-x root/root        39 2014-02-16 08:14 ./usr/bin/expandCols
+-rwxr-xr-x root/root        37 2014-02-16 08:14 ./usr/bin/sortBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/fastaFromBed
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/bedpeToBam
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/complementBed
+-rwxr-xr-x root/root        38 2014-02-16 08:14 ./usr/bin/mergeBed
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/mapBed
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/bedToIgv
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/nucBed
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/pairToBed
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/multiIntersectBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/annotateBed
+-rwxr-xr-x root/root        38 2014-02-16 08:14 ./usr/bin/flankBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/coverageBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/multiBamCov
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/unionBedGraphs
+-rwxr-xr-x root/root        39 2014-02-16 08:14 ./usr/bin/randomBed
+-rwxr-xr-x root/root        38 2014-02-16 08:14 ./usr/bin/linksBed
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/intersectBed
+-rwxr-xr-x root/root        44 2014-02-16 08:14 ./usr/bin/bed12ToBed6
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/bedToBam
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/tagBam
+drwxr-xr-x root/root         0 2014-02-16 08:15 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 08:15 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-abce8984-ccea-45e3-a5dc-d4e7d91e4372/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
-  cdbs* debhelper* diffstat* file* gettext* gettext-base* groff-base*
-  html2text* intltool-debian* libasprintf0c2* libcroco3* libexpat1* libffi5*
-  libgettextpo0* libglib2.0-0* libmagic1* libncursesw5* libpipeline1*
-  libsqlite3-0* libssl1.0.0* libunistring0* libxml2* man-db* mime-support*
-  po-debconf* python* python-minimal* python2.7* python2.7-minimal* quilt*
-  zlib1g-dev*
-0 upgraded, 0 newly installed, 31 to remove and 22 not upgraded.
-After this operation, 46.8 MB disk space will be freed.
-(Reading database ... 13249 files and directories currently installed.)
-Removing cdbs ...
-Removing debhelper ...
-Removing quilt ...
-Purging configuration files for quilt ...
-Removing diffstat ...
-Removing file ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2:mipsel ...
-Removing libcroco3:mipsel ...
-Purging configuration files for libcroco3:mipsel ...
-Removing python ...
-Purging configuration files for python ...
-Removing python2.7 ...
-Purging configuration files for python2.7 ...
-Removing libexpat1:mipsel ...
-Purging configuration files for libexpat1:mipsel ...
-Removing libglib2.0-0:mipsel ...
-Purging configuration files for libglib2.0-0:mipsel ...
-Removing libffi5:mipsel ...
-Purging configuration files for libffi5:mipsel ...
-Removing libgettextpo0:mipsel ...
-Removing libmagic1:mipsel ...
-Purging configuration files for libmagic1:mipsel ...
-Removing libncursesw5:mipsel ...
-Purging configuration files for libncursesw5:mipsel ...
-Removing libpipeline1:mipsel ...
-Purging configuration files for libpipeline1:mipsel ...
-Removing libsqlite3-0:mipsel ...
-Purging configuration files for libsqlite3-0:mipsel ...
-Removing libssl1.0.0:mipsel ...
-Purging configuration files for libssl1.0.0:mipsel ...
-Removing libunistring0:mipsel ...
-Purging configuration files for libunistring0:mipsel ...
-Removing libxml2:mipsel ...
-Purging configuration files for libxml2:mipsel ...
-Removing mime-support ...
-Purging configuration files for mime-support ...
-Removing python-minimal ...
-Removing python2.7-minimal ...
-Purging configuration files for python2.7-minimal ...
-Removing zlib1g-dev:mipsel ...
+Purging /«BUILDDIR»
+Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: mipsel
-Build-Space: 80836
-Build-Time: 1442
+Build Architecture: mipsel
+Build-Space: 104596
+Build-Time: 2029
 Distribution: sid
-Install-Time: 79
-Job: bedtools_2.17.0-1
+Host Architecture: mipsel
+Install-Time: 83
+Job: bedtools_2.19.0-1
+Machine Architecture: mipsel
 Package: bedtools
-Package-Time: 1578
-Source-Version: 2.17.0-1
-Space: 80836
+Package-Time: 2213
+Source-Version: 2.19.0-1
+Space: 104596
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1154
-Build needed 00:26:18, 80836k disc space
-Signature with key '8C9FAB20' requested:
+Finished at 20140216-0815
+Build needed 00:36:53, 104596k disc space
+Signature with key 'B1DFE6AC' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_mipsel.changes B1DFE6AC
 
+Successfully signed changes file
diff --git a/mipsel.log b/mipsel.log
index e7632bf..0ed2df1 100644
--- a/mipsel.log
+++ b/mipsel.log
@@ -1,58 +1,74 @@
-From buildd at mayer.debian.org Sun Nov 04 11:55:06 2012
-Return-path: <buildd at mayer.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
-	id 1TUynB-0004MB-S4
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:55:06 +0000
-Received: from mayer.debian.org ([140.211.166.78])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=mayer.debian.org, EMAIL=hostmaster at mayer.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at mayer.debian.org>)
-	id 1TUyn9-0006lO-Sk
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:55:04 +0000
-Received: from buildd by mayer.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at mayer.debian.org>) id 1TUyn6-0006rb-Eo
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:55:00 +0000
-Date: Sun, 04 Nov 2012 11:55:00 +0000
-Message-Id: <E1TUyn6-0006rb-Eo at mayer.debian.org>
-From: buildd on mayer <buildd at mayer.debian.org>
+From buildd at rem.debian.org Sun Feb 16 08:16:15 2014
+Return-path: <buildd at rem.debian.org>
+Received: from mailly.debian.org ([2001:41b8:202:deb:6564:a62:52c3:4b72])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=mailly.debian.org, EMAIL=hostmaster at mailly.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at rem.debian.org>)
+ id 1WEwtb-00007l-7K
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 08:16:15 +0000
+Received: from rem.debian.org ([2001:41b8:202:deb:202:4cff:fefe:d06])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=rem.debian.org, EMAIL=hostmaster at rem.debian.org (verified)
+ by mailly.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at rem.debian.org>)
+ id 1WEwta-0001vH-N9
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 08:16:14 +0000
+Received: from buildd by rem.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at rem.debian.org>) id 1WEwtY-00035b-CA
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 08:16:12 +0000
+Content-Transfer-Encoding: binary
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 08:16:11 +0000
+From: buildd on rem <buildd at rem.debian.org>
 To: logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on mipsel (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
+Subject: Log for successful build of bedtools_2.19.0-1 on mipsel (dist=sid)
+Key-Id: B1DFE6AC
+Message-Id: <E1WEwtY-00035b-CA at rem.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on mayer.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on rem.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (mipsel)                                 04 Nov 2012 11:28 ║
+║ bedtools 2.19.0-1 (mipsel)                                 16 Feb 2014 07:39 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: mipsel
-Hit http://debian.oregonstate.edu sid InRelease
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org  InRelease
-Get:1 http://incoming.debian.org  Release.gpg [836 B]
-Get:2 http://incoming.debian.org  Release [1141 B]
-Hit http://debian.oregonstate.edu sid/main Sources
-Hit http://debian.oregonstate.edu sid/contrib Sources
-Hit http://debian.oregonstate.edu sid/main mipsel Packages
-Hit http://debian.oregonstate.edu sid/contrib mipsel Packages
-Hit http://incoming.debian.org sid/main Sources
-Hit http://incoming.debian.org sid/contrib Sources
-Hit http://incoming.debian.org sid/main mipsel Packages
-Hit http://incoming.debian.org sid/contrib mipsel Packages
-Get:3 http://incoming.debian.org  Sources [16.2 kB]
-Get:4 http://incoming.debian.org  Packages [140 kB]
-Fetched 158 kB in 2s (75.2 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: mipsel
+Host Architecture: mipsel
+Build Architecture: mipsel
+
+I: NOTICE: Log filtering will replace 'build/bedtools-l8Xedm/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-l8Xedm' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-mipsel-sbuild-042d0248-b9a3-4ec4-92c8-ccfd564890a5' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://ftp.de.debian.org unstable InRelease [199 kB]
+Get:2 http://incoming.debian.org unstable InRelease [199 kB]
+Get:3 http://ftp.de.debian.org unstable/main Sources [7001 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [58.1 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [105 kB]
+Get:8 http://ftp.de.debian.org unstable/main mipsel Packages [6394 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib mipsel Packages [42.8 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:12 http://incoming.debian.org unstable/main mipsel Packages [6394 kB]
+Get:13 http://incoming.debian.org unstable/contrib mipsel Packages [42.8 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main mipsel Packages [72.7 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib mipsel Packages [1076 B]
+Fetched 27.8 MB in 41s (670 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -72,214 +88,266 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (791 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 3s (1231 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-1p81HI/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 23 not upgraded.
+Need to get 0 B/816 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10973 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-kMpdj4/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-14)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  diffstat file gettext gettext-base groff-base html2text intltool-debian
-  libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0 libglib2.0-0
-  libmagic1 libncursesw5 libpipeline1 libsqlite3-0 libssl1.0.0 libunistring0
-  libxml2 man-db mime-support po-debconf python-minimal python2.7
-  python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt zlib1g-dev
 Suggested packages:
-  devscripts dh-make gettext-doc groff less www-browser libmail-box-perl
-  python-doc python-tk python2.7-doc binfmt-support procmail graphviz
-  default-mta mail-transport-agent
+  wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
+  www-browser libmail-box-perl python-doc python-tk python2.7-doc
+  binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
-  cdbs debhelper diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpipeline1 libsqlite3-0 libssl1.0.0
-  libunistring0 libxml2 man-db mime-support po-debconf python python-minimal
-  python2.7 python2.7-minimal quilt zlib1g-dev
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+0 upgraded, 34 newly installed, 0 to remove and 23 not upgraded.
+Need to get 14.0 MB/14.0 MB of archives.
+After this operation, 48.8 MB of additional disk space will be used.
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libncursesw5 mipsel 5.9+20140118-1 [102 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 mipsel 1.2.6-2 [22.1 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libssl1.0.0 mipsel 1.0.1f-1 [857 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main groff-base mipsel 1.22.2-5 [1141 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils mipsel 9.0.5 [211 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main man-db mipsel 2.6.6-1 [969 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 mipsel 0.18.3.2-1 [29.2 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libmagic1 mipsel 1:5.14-2 [217 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libsqlite3-0 mipsel 3.8.3.1-1 [384 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libxml2 mipsel 2.9.1+dfsg1-3 [860 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libffi6 mipsel 3.0.13-12 [17.6 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 mipsel 2.38.2-5 [2064 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libcroco3 mipsel 0.6.8-2 [120 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libexpat1 mipsel 2.1.0-4 [141 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libunistring0 mipsel 0.9.3-5 [407 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libpython2.7-minimal mipsel 2.7.6-5 [347 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main python2.7-minimal mipsel 2.7.6-5 [927 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main file mipsel 1:5.14-2 [53.9 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main gettext-base mipsel 0.18.3.2-1 [114 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpython2.7-stdlib mipsel 2.7.6-5 [1741 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main python2.7 mipsel 2.7.6-5 [234 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main python-minimal mipsel 2.7.5-5 [39.2 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libpython-stdlib mipsel 2.7.5-5 [18.7 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main python mipsel 2.7.5-5 [146 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main gettext mipsel 0.18.3.2-1 [1151 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main diffstat mipsel 1.58-1 [27.6 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev mipsel 1:1.2.8.dfsg-1 [216 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 31 newly installed, 0 to remove and 22 not upgraded.
-Need to get 0 B/15.8 MB of archives.
-After this operation, 46.8 MB of additional disk space will be used.
+Fetched 14.0 MB in 4s (3265 kB/s)
 Selecting previously unselected package libncursesw5:mipsel.
-(Reading database ... 10941 files and directories currently installed.)
-Unpacking libncursesw5:mipsel (from .../libncursesw5_5.9-10_mipsel.deb) ...
+(Reading database ... 10973 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_mipsel.deb ...
+Unpacking libncursesw5:mipsel (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:mipsel.
-Unpacking libpipeline1:mipsel (from .../libpipeline1_1.2.2-1_mipsel.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_mipsel.deb ...
+Unpacking libpipeline1:mipsel (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:mipsel.
-Unpacking libssl1.0.0:mipsel (from .../libssl1.0.0_1.0.1c-4_mipsel.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_mipsel.deb ...
+Unpacking libssl1.0.0:mipsel (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_mipsel.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_mipsel.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_mipsel.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:mipsel.
-Unpacking libasprintf0c2:mipsel (from .../libasprintf0c2_0.18.1.1-9_mipsel.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_mipsel.deb ...
+Unpacking libasprintf0c2:mipsel (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:mipsel.
-Unpacking libmagic1:mipsel (from .../libmagic1_5.11-2_mipsel.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_mipsel.deb ...
+Unpacking libmagic1:mipsel (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:mipsel.
-Unpacking libsqlite3-0:mipsel (from .../libsqlite3-0_3.7.14.1-1_mipsel.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_mipsel.deb ...
+Unpacking libsqlite3-0:mipsel (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:mipsel.
-Unpacking libxml2:mipsel (from .../libxml2_2.8.0+dfsg1-6_mipsel.deb) ...
-Selecting previously unselected package libffi5:mipsel.
-Unpacking libffi5:mipsel (from .../libffi5_3.0.10-3_mipsel.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_mipsel.deb ...
+Unpacking libxml2:mipsel (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:mipsel.
+Preparing to unpack .../libffi6_3.0.13-12_mipsel.deb ...
+Unpacking libffi6:mipsel (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:mipsel.
-Unpacking libglib2.0-0:mipsel (from .../libglib2.0-0_2.33.12+really2.32.4-3_mipsel.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_mipsel.deb ...
+Unpacking libglib2.0-0:mipsel (2.38.2-5) ...
 Selecting previously unselected package libcroco3:mipsel.
-Unpacking libcroco3:mipsel (from .../libcroco3_0.6.6-1_mipsel.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_mipsel.deb ...
+Unpacking libcroco3:mipsel (0.6.8-2) ...
 Selecting previously unselected package libexpat1:mipsel.
-Unpacking libexpat1:mipsel (from .../libexpat1_2.1.0-1_mipsel.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_mipsel.deb ...
+Unpacking libexpat1:mipsel (2.1.0-4) ...
 Selecting previously unselected package libunistring0:mipsel.
-Unpacking libunistring0:mipsel (from .../libunistring0_0.9.3-5_mipsel.deb) ...
-Selecting previously unselected package libgettextpo0:mipsel.
-Unpacking libgettextpo0:mipsel (from .../libgettextpo0_0.18.1.1-9_mipsel.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_mipsel.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_mipsel.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_mipsel.deb ...
+Unpacking libunistring0:mipsel (0.9.3-5) ...
+Selecting previously unselected package libpython2.7-minimal:mipsel.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_mipsel.deb ...
+Unpacking libpython2.7-minimal:mipsel (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_mipsel.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-2_mipsel.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_mipsel.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_mipsel.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_mipsel.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_mipsel.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:mipsel.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_mipsel.deb ...
+Unpacking libpython2.7-stdlib:mipsel (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_mipsel.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_mipsel.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_mipsel.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:mipsel.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_mipsel.deb ...
+Unpacking libpython-stdlib:mipsel (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_mipsel.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_mipsel.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_mipsel.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_mipsel.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_mipsel.deb) ...
+Preparing to unpack .../diffstat_1.58-1_mipsel.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:mipsel.
-Unpacking zlib1g-dev:mipsel (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_mipsel.deb) ...
-Setting up libncursesw5:mipsel (5.9-10) ...
-Setting up libpipeline1:mipsel (1.2.2-1) ...
-Setting up libssl1.0.0:mipsel (1.0.1c-4) ...
-Setting up libasprintf0c2:mipsel (0.18.1.1-9) ...
-Setting up libmagic1:mipsel (5.11-2) ...
-Setting up libsqlite3-0:mipsel (3.7.14.1-1) ...
-Setting up libxml2:mipsel (2.8.0+dfsg1-6) ...
-Setting up libffi5:mipsel (3.0.10-3) ...
-Setting up libglib2.0-0:mipsel (2.33.12+really2.32.4-3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_mipsel.deb ...
+Unpacking zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:mipsel (5.9+20140118-1) ...
+Setting up libpipeline1:mipsel (1.2.6-2) ...
+Setting up libssl1.0.0:mipsel (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
+update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
+update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:mipsel (0.18.3.2-1) ...
+Setting up libmagic1:mipsel (1:5.14-2) ...
+Setting up libsqlite3-0:mipsel (3.8.3.1-1) ...
+Setting up libxml2:mipsel (2.9.1+dfsg1-3) ...
+Setting up libffi6:mipsel (3.0.13-12) ...
+Setting up libglib2.0-0:mipsel (2.38.2-5) ...
 No schema files found: doing nothing.
-Setting up libcroco3:mipsel (0.6.6-1) ...
-Setting up libexpat1:mipsel (2.1.0-1) ...
+Setting up libcroco3:mipsel (0.6.8-2) ...
+Setting up libexpat1:mipsel (2.1.0-4) ...
 Setting up libunistring0:mipsel (0.9.3-5) ...
-Setting up libgettextpo0:mipsel (0.18.1.1-9) ...
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up libpython2.7-minimal:mipsel (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:mipsel (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:mipsel (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:mipsel (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-sb1-bcm91250a mipsel (mips64)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.3-12 gcc-4.6_4.6.3-12 libc6-dev_2.13-35 libstdc++6_4.7.2-4 libstdc++6-4.6-dev_4.6.3-12 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.3-12 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.9 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5. [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:mipsel (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-sb1-bcm91250a mipsel (mips64)
+Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6 g++-4.8_4.8.2-14 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 linux-libc-dev_3.12.9-1
+Package versions: apt_0.9.15 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2-7  [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -289,35 +357,56 @@ Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-mipsel-sbuild
+SCHROOT_CHROOT_NAME=sid-mipsel-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-mipsel-sbuild-042d0248-b9a3-4ec4-92c8-ccfd564890a5
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture mipsel
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -329,16 +418,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring docs/content/related-tools.rst
+Restoring docs/content/installation.rst
+Restoring README.md
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -351,41 +445,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -437,48 +575,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -490,6 +642,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -512,13 +666,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -528,31 +686,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -560,22 +731,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -587,20 +784,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -612,7 +815,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -633,7 +836,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -717,6 +920,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -731,7 +936,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -747,7 +952,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -758,7 +963,6 @@ dh_shlibdeps -pbedtools
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
-dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -767,65 +971,85 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_mipsel.deb'.
- dpkg-genchanges -B -mmipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org> >../bedtools_2.17.0-1_mipsel.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_mipsel.deb'.
+ dpkg-genchanges -B -mmipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org> >../bedtools_2.19.0-1_mipsel.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1154
+Build finished at 20140216-0815
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_mipsel.changes:
+─────────────────────────────────
 
-bedtools_2.17.0-1_mipsel.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: mipsel
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: mipsel Build Daemon (mayer) <buildd_mips-mayer at buildd.debian.org>
+Maintainer: mipsel Build Daemon (rem) <buildd_mipsel-rem at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 5382b9047b1e8b599dd2f3b3c19ddfbfb9a69f53 380730 bedtools_2.17.0-1_mipsel.deb
+ 9cddb2857606f711b0bea192bf1fb622ed496272 514128 bedtools_2.19.0-1_mipsel.deb
 Checksums-Sha256: 
- fd2f0467716f7b441625457b79004062282bc9823e989bf42da7349d969cad4d 380730 bedtools_2.17.0-1_mipsel.deb
+ af0636381257720eacc89a562c65434358c64da8074b4b0526c46de6c1e9c860 514128 bedtools_2.19.0-1_mipsel.deb
 Files: 
- 7b9993857e35e2722c06d686b487a0d0 380730 science optional bedtools_2.17.0-1_mipsel.deb
+ fd0d4eabc97c1a076888dde4edd4897d 514128 science optional bedtools_2.19.0-1_mipsel.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_mipsel.deb
+bedtools_2.19.0-1_mipsel.deb
 ────────────────────────────
 
  new debian package, version 2.0.
- size 380730 bytes: control archive= 4110 bytes.
+ size 514128 bytes: control archive=6267 bytes.
       32 bytes,     1 lines      conffiles            
-     834 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     833 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: mipsel
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1673
- Depends: libc6 (>= 2.2), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
+ Installed-Size: 2810
+ Depends: libc6 (>= 2.2), libgcc1 (>= 1:4.3), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
  Priority: optional
@@ -837,270 +1061,270 @@ bedtools_2.17.0-1_mipsel.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/doc/
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/doc/bedtools/
--rw-r--r-- root/root      1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root      5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root     11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root      1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
-drwxr-xr-x root/root         0 2012-11-04 11:53 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:30 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:54 ./usr/bin/
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/annotateBed
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/bamToBed
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/bamToFastq
--rwxr-xr-x root/root        44 2012-11-04 11:53 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/bedToBam
--rwxr-xr-x root/root        36 2012-11-04 11:53 ./usr/bin/bedToIgv
--rwxr-xr-x root/root   1506976 2012-11-04 11:53 ./usr/bin/bedtools
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/closestBed
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/clusterBed
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/complementBed
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/coverageBed
--rwxr-xr-x root/root        39 2012-11-04 11:53 ./usr/bin/expandCols
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root        38 2012-11-04 11:53 ./usr/bin/flankBed
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/getOverlap
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/intersectBed
--rwxr-xr-x root/root        38 2012-11-04 11:53 ./usr/bin/linksBed
--rwxr-xr-x root/root        36 2012-11-04 11:53 ./usr/bin/mapBed
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        38 2012-11-04 11:53 ./usr/bin/mergeBed
--rwxr-xr-x root/root        41 2012-11-04 11:53 ./usr/bin/multiBamCov
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        36 2012-11-04 11:53 ./usr/bin/nucBed
--rwxr-xr-x root/root        42 2012-11-04 11:53 ./usr/bin/pairToBed
--rwxr-xr-x root/root        43 2012-11-04 11:53 ./usr/bin/pairToPair
--rwxr-xr-x root/root        39 2012-11-04 11:53 ./usr/bin/randomBed
--rwxr-xr-x root/root        40 2012-11-04 11:53 ./usr/bin/shuffleBed
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+-rwxr-xr-x root/root        39 2014-02-16 08:14 ./usr/bin/windowBed
+-rwxr-xr-x root/root        40 2014-02-16 08:14 ./usr/bin/clusterBed
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/genomeCoverageBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/subtractBed
+-rwxr-xr-x root/root        40 2014-02-16 08:14 ./usr/bin/closestBed
+-rwxr-xr-x root/root        39 2014-02-16 08:14 ./usr/bin/expandCols
+-rwxr-xr-x root/root        37 2014-02-16 08:14 ./usr/bin/sortBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/fastaFromBed
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/bedpeToBam
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/complementBed
+-rwxr-xr-x root/root        38 2014-02-16 08:14 ./usr/bin/mergeBed
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/mapBed
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/bedToIgv
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/nucBed
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/pairToBed
+-rwxr-xr-x root/root        43 2014-02-16 08:14 ./usr/bin/multiIntersectBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/annotateBed
+-rwxr-xr-x root/root        38 2014-02-16 08:14 ./usr/bin/flankBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/coverageBed
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/multiBamCov
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/unionBedGraphs
+-rwxr-xr-x root/root        39 2014-02-16 08:14 ./usr/bin/randomBed
+-rwxr-xr-x root/root        38 2014-02-16 08:14 ./usr/bin/linksBed
+-rwxr-xr-x root/root        42 2014-02-16 08:14 ./usr/bin/intersectBed
+-rwxr-xr-x root/root        44 2014-02-16 08:14 ./usr/bin/bed12ToBed6
+-rwxr-xr-x root/root        41 2014-02-16 08:14 ./usr/bin/bedToBam
+-rwxr-xr-x root/root        36 2014-02-16 08:14 ./usr/bin/tagBam
+drwxr-xr-x root/root         0 2014-02-16 08:15 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 08:15 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-mipsel-sbuild-abce8984-ccea-45e3-a5dc-d4e7d91e4372/build/buildd-bedtools_2.17.0-1-mipsel-ZcMMwo
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 22 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
-  cdbs* debhelper* diffstat* file* gettext* gettext-base* groff-base*
-  html2text* intltool-debian* libasprintf0c2* libcroco3* libexpat1* libffi5*
-  libgettextpo0* libglib2.0-0* libmagic1* libncursesw5* libpipeline1*
-  libsqlite3-0* libssl1.0.0* libunistring0* libxml2* man-db* mime-support*
-  po-debconf* python* python-minimal* python2.7* python2.7-minimal* quilt*
-  zlib1g-dev*
-0 upgraded, 0 newly installed, 31 to remove and 22 not upgraded.
-After this operation, 46.8 MB disk space will be freed.
-(Reading database ... 13249 files and directories currently installed.)
-Removing cdbs ...
-Removing debhelper ...
-Removing quilt ...
-Purging configuration files for quilt ...
-Removing diffstat ...
-Removing file ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libasprintf0c2:mipsel ...
-Removing libcroco3:mipsel ...
-Purging configuration files for libcroco3:mipsel ...
-Removing python ...
-Purging configuration files for python ...
-Removing python2.7 ...
-Purging configuration files for python2.7 ...
-Removing libexpat1:mipsel ...
-Purging configuration files for libexpat1:mipsel ...
-Removing libglib2.0-0:mipsel ...
-Purging configuration files for libglib2.0-0:mipsel ...
-Removing libffi5:mipsel ...
-Purging configuration files for libffi5:mipsel ...
-Removing libgettextpo0:mipsel ...
-Removing libmagic1:mipsel ...
-Purging configuration files for libmagic1:mipsel ...
-Removing libncursesw5:mipsel ...
-Purging configuration files for libncursesw5:mipsel ...
-Removing libpipeline1:mipsel ...
-Purging configuration files for libpipeline1:mipsel ...
-Removing libsqlite3-0:mipsel ...
-Purging configuration files for libsqlite3-0:mipsel ...
-Removing libssl1.0.0:mipsel ...
-Purging configuration files for libssl1.0.0:mipsel ...
-Removing libunistring0:mipsel ...
-Purging configuration files for libunistring0:mipsel ...
-Removing libxml2:mipsel ...
-Purging configuration files for libxml2:mipsel ...
-Removing mime-support ...
-Purging configuration files for mime-support ...
-Removing python-minimal ...
-Removing python2.7-minimal ...
-Purging configuration files for python2.7-minimal ...
-Removing zlib1g-dev:mipsel ...
+Purging /«BUILDDIR»
+Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: mipsel
-Build-Space: 80836
-Build-Time: 1442
+Build Architecture: mipsel
+Build-Space: 104596
+Build-Time: 2029
 Distribution: sid
-Install-Time: 79
-Job: bedtools_2.17.0-1
+Host Architecture: mipsel
+Install-Time: 83
+Job: bedtools_2.19.0-1
+Machine Architecture: mipsel
 Package: bedtools
-Package-Time: 1578
-Source-Version: 2.17.0-1
-Space: 80836
+Package-Time: 2213
+Source-Version: 2.19.0-1
+Space: 104596
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1154
-Build needed 00:26:18, 80836k disc space
-Signature with key '8C9FAB20' requested:
+Finished at 20140216-0815
+Build needed 00:36:53, 104596k disc space
+Signature with key 'B1DFE6AC' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_mipsel.changes B1DFE6AC
 
+Successfully signed changes file
diff --git a/powerpc.log b/powerpc.log
index badfdcd..e88d909 100644
--- a/powerpc.log
+++ b/powerpc.log
@@ -1,59 +1,74 @@
-From buildd at parry.debian.org Sun Nov 04 11:35:37 2012
-Return-path: <buildd at parry.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at parry.debian.org>)
-	id 1TUyUK-0001Em-Lv
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:35:36 +0000
-Received: from parry.debian.org ([140.211.15.153])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=parry.debian.org, EMAIL=hostmaster at parry.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at parry.debian.org>)
-	id 1TUyUI-000548-WF; Sun, 04 Nov 2012 11:35:35 +0000
-Received: from buildd by parry.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at parry.debian.org>)
-	id 1TUyUG-0002rv-6a; Sun, 04 Nov 2012 11:35:32 +0000
-Date: Sun, 04 Nov 2012 11:35:32 +0000
-Message-Id: <E1TUyUG-0002rv-6a at parry.debian.org>
-From: buildd on parry <buildd at parry.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on powerpc (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
+From buildd at praetorius.debian.org Sun Feb 16 07:45:55 2014
+Return-path: <buildd at praetorius.debian.org>
+Received: from muffat.debian.org ([2607:f8f0:610:4000:6564:a62:ce0c:1392])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at praetorius.debian.org>)
+ id 1WEwQE-0005pT-T3
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:45:55 +0000
+Received: from [2001:6b0:e:2a18:214:5eff:fe97:268a]
+ (helo=praetorius.debian.org)
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=praetorius.debian.org, EMAIL=hostmaster at praetorius.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at praetorius.debian.org>)
+ id 1WEwQC-0007KG-OA; Sun, 16 Feb 2014 07:45:53 +0000
+Received: from buildd by praetorius.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at praetorius.debian.org>)
+ id 1WEwQ9-0003Yr-Q8; Sun, 16 Feb 2014 07:45:49 +0000
+Content-Transfer-Encoding: binary
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 07:45:49 +0000
+From: buildd on praetorius <buildd at praetorius.debian.org>
+To: wouter at debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on powerpc (dist=sid)
+Key-Id: 0E6E7223
+Message-Id: <E1WEwQ9-0003Yr-Q8 at praetorius.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on parry.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on praetorius.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (powerpc)                                04 Nov 2012 11:31 ║
+║ bedtools 2.19.0-1 (powerpc)                                16 Feb 2014 07:37 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: powerpc
-Get:1 http://incoming.debian.org unstable InRelease [219 kB]
-Get:2 http://debian.osuosl.org unstable InRelease [219 kB]
-Get:3 http://debian.osuosl.org unstable/main Sources [6381 kB]
-Get:4 http://debian.osuosl.org unstable/contrib Sources [53.1 kB]
-Get:5 http://debian.osuosl.org unstable/non-free Sources [101 kB]
-Get:6 http://debian.osuosl.org unstable/main powerpc Packages [6074 kB]
-Ign http://incoming.debian.org  InRelease
-Get:7 http://incoming.debian.org unstable/main Sources [6381 kB]
-Get:8 http://debian.osuosl.org unstable/contrib powerpc Packages [37.0 kB]
-Get:9 http://incoming.debian.org unstable/contrib Sources [53.1 kB]
-Get:10 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:11 http://incoming.debian.org unstable/main powerpc Packages [6074 kB]
-Get:12 http://incoming.debian.org unstable/contrib powerpc Packages [37.0 kB]
-Get:13 http://incoming.debian.org  Release.gpg [836 B]
-Get:14 http://incoming.debian.org  Release [1141 B]
-Get:15 http://incoming.debian.org  Sources [16.2 kB]
-Get:16 http://incoming.debian.org  Packages [140 kB]
-Fetched 25.9 MB in 9s (2876 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: powerpc
+Host Architecture: powerpc
+Build Architecture: powerpc
+
+I: NOTICE: Log filtering will replace 'build/bedtools-oO9b2j/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-oO9b2j' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-powerpc-sbuild-d5854e9a-0bb2-49a6-b132-c79d18b2bb9e' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://ftp.se.debian.org unstable InRelease [199 kB]
+Get:2 http://ftp.se.debian.org unstable/main Sources [7001 kB]
+Get:3 http://incoming.debian.org unstable InRelease [199 kB]
+Get:4 http://ftp.se.debian.org unstable/contrib Sources [58.1 kB]
+Get:5 http://ftp.se.debian.org unstable/non-free Sources [105 kB]
+Get:6 http://ftp.se.debian.org unstable/main powerpc Packages [6492 kB]
+Get:7 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:8 http://ftp.se.debian.org unstable/contrib powerpc Packages [42.4 kB]
+Get:9 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:12 http://incoming.debian.org unstable/main powerpc Packages [6492 kB]
+Get:13 http://incoming.debian.org unstable/contrib powerpc Packages [42.4 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main powerpc Packages [61.9 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib powerpc Packages [1076 B]
+Fetched 28.0 MB in 14s (1900 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -73,252 +88,280 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (926 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 4s (929 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-n7eXJC/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 46 not upgraded.
+Need to get 0 B/818 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 11103 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-XybA3U/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.4)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-13)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.2)
-mount: already installed (2.20.1-5.2)
-util-linux: already installed (2.20.1-5.2)
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpipeline1 libsqlite3-0 libssl1.0.0
-  libunistring0 libxml2 man-db mime-support po-debconf python-minimal
-  python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncurses5 libncursesw5 libpipeline1 libpython-stdlib
+  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libtinfo5
+  libunistring0 libxml2 man-db mime-support po-debconf python python-minimal
+  python2.7 python2.7-minimal quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
-  libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf python
-  python-minimal python2.7 python2.7-minimal quilt zlib1g-dev
-0 upgraded, 32 newly installed, 0 to remove and 30 not upgraded.
-Need to get 16.4 MB of archives.
-After this operation, 46.9 MB of additional disk space will be used.
-Get:1 http://debian.osuosl.org/debian/ unstable/main libncursesw5 powerpc 5.9-10 [132 kB]
-Get:2 http://debian.osuosl.org/debian/ unstable/main libpipeline1 powerpc 1.2.2-1 [39.0 kB]
-Get:3 http://debian.osuosl.org/debian/ unstable/main libssl1.0.0 powerpc 1.0.1c-4 [1178 kB]
-Get:4 http://debian.osuosl.org/debian/ unstable/main libasprintf0c2 powerpc 0.18.1.1-9 [27.0 kB]
-Get:5 http://debian.osuosl.org/debian/ unstable/main libmagic1 powerpc 5.11-2 [201 kB]
-Get:6 http://debian.osuosl.org/debian/ unstable/main libsqlite3-0 powerpc 3.7.14.1-1 [451 kB]
-Get:7 http://debian.osuosl.org/debian/ unstable/main libxml2 powerpc 2.8.0+dfsg1-6 [851 kB]
-Get:8 http://debian.osuosl.org/debian/ unstable/main libffi5 powerpc 3.0.10-3 [25.5 kB]
-Get:9 http://debian.osuosl.org/debian/ unstable/main libglib2.0-0 powerpc 2.33.12+really2.32.4-3 [1713 kB]
-Get:10 http://debian.osuosl.org/debian/ unstable/main libcroco3 powerpc 0.6.6-1 [121 kB]
-Get:11 http://debian.osuosl.org/debian/ unstable/main libexpat1 powerpc 2.1.0-1 [142 kB]
-Get:12 http://debian.osuosl.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
-Get:13 http://debian.osuosl.org/debian/ unstable/main libgettextpo0 powerpc 0.18.1.1-9 [137 kB]
-Get:14 http://debian.osuosl.org/debian/ unstable/main bsdmainutils powerpc 9.0.3 [208 kB]
-Get:15 http://debian.osuosl.org/debian/ unstable/main groff-base powerpc 1.21-9 [1179 kB]
-Get:16 http://debian.osuosl.org/debian/ unstable/main man-db powerpc 2.6.3-1 [1051 kB]
-Get:17 http://debian.osuosl.org/debian/ unstable/main file powerpc 5.11-2 [51.7 kB]
-Get:18 http://debian.osuosl.org/debian/ unstable/main gettext-base powerpc 0.18.1.1-9 [131 kB]
-Get:19 http://debian.osuosl.org/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:20 http://debian.osuosl.org/debian/ unstable/main python2.7-minimal powerpc 2.7.3-5 [1753 kB]
-Get:21 http://debian.osuosl.org/debian/ unstable/main python2.7 powerpc 2.7.3-5 [2644 kB]
-Get:22 http://debian.osuosl.org/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:23 http://debian.osuosl.org/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:24 http://debian.osuosl.org/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:25 http://debian.osuosl.org/debian/ unstable/main html2text powerpc 1.3.2a-15 [105 kB]
-Get:26 http://debian.osuosl.org/debian/ unstable/main gettext powerpc 0.18.1.1-9 [1929 kB]
-Get:27 http://debian.osuosl.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:28 http://debian.osuosl.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:29 http://debian.osuosl.org/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:30 http://debian.osuosl.org/debian/ unstable/main diffstat powerpc 1.55-3 [29.2 kB]
-Get:31 http://debian.osuosl.org/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:32 http://debian.osuosl.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.7.dfsg-13 [213 kB]
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+The following packages will be upgraded:
+  libncurses5 libtinfo5
+2 upgraded, 34 newly installed, 0 to remove and 44 not upgraded.
+Need to get 14.4 MB/14.4 MB of archives.
+After this operation, 47.5 MB of additional disk space will be used.
+Get:1 http://ftp.se.debian.org/debian/ unstable/main libtinfo5 powerpc 5.9+20140118-1 [270 kB]
+Get:2 http://ftp.se.debian.org/debian/ unstable/main libncurses5 powerpc 5.9+20140118-1 [81.6 kB]
+Get:3 http://ftp.se.debian.org/debian/ unstable/main libncursesw5 powerpc 5.9+20140118-1 [105 kB]
+Get:4 http://ftp.se.debian.org/debian/ unstable/main libpipeline1 powerpc 1.2.6-2 [23.0 kB]
+Get:5 http://ftp.se.debian.org/debian/ unstable/main libssl1.0.0 powerpc 1.0.1f-1 [872 kB]
+Get:6 http://ftp.se.debian.org/debian/ unstable/main groff-base powerpc 1.22.2-5 [1134 kB]
+Get:7 http://ftp.se.debian.org/debian/ unstable/main bsdmainutils powerpc 9.0.5 [211 kB]
+Get:8 http://ftp.se.debian.org/debian/ unstable/main man-db powerpc 2.6.6-1 [967 kB]
+Get:9 http://ftp.se.debian.org/debian/ unstable/main libasprintf0c2 powerpc 0.18.3.2-1 [29.4 kB]
+Get:10 http://ftp.se.debian.org/debian/ unstable/main libmagic1 powerpc 1:5.14-2 [216 kB]
+Get:11 http://ftp.se.debian.org/debian/ unstable/main libsqlite3-0 powerpc 3.8.3.1-1 [368 kB]
+Get:12 http://ftp.se.debian.org/debian/ unstable/main libxml2 powerpc 2.9.1+dfsg1-3 [867 kB]
+Get:13 http://ftp.se.debian.org/debian/ unstable/main libffi6 powerpc 3.0.13-12 [19.0 kB]
+Get:14 http://ftp.se.debian.org/debian/ unstable/main libglib2.0-0 powerpc 2.38.2-5 [2100 kB]
+Get:15 http://ftp.se.debian.org/debian/ unstable/main libcroco3 powerpc 0.6.8-2 [122 kB]
+Get:16 http://ftp.se.debian.org/debian/ unstable/main libexpat1 powerpc 2.1.0-4 [143 kB]
+Get:17 http://ftp.se.debian.org/debian/ unstable/main libunistring0 powerpc 0.9.3-5 [421 kB]
+Get:18 http://ftp.se.debian.org/debian/ unstable/main libpython2.7-minimal powerpc 2.7.6-5 [346 kB]
+Get:19 http://ftp.se.debian.org/debian/ unstable/main python2.7-minimal powerpc 2.7.6-5 [971 kB]
+Get:20 http://ftp.se.debian.org/debian/ unstable/main file powerpc 1:5.14-2 [54.1 kB]
+Get:21 http://ftp.se.debian.org/debian/ unstable/main gettext-base powerpc 0.18.3.2-1 [112 kB]
+Get:22 http://ftp.se.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:23 http://ftp.se.debian.org/debian/ unstable/main libpython2.7-stdlib powerpc 2.7.6-5 [1725 kB]
+Get:24 http://ftp.se.debian.org/debian/ unstable/main python2.7 powerpc 2.7.6-5 [234 kB]
+Get:25 http://ftp.se.debian.org/debian/ unstable/main python-minimal powerpc 2.7.5-5 [39.2 kB]
+Get:26 http://ftp.se.debian.org/debian/ unstable/main libpython-stdlib powerpc 2.7.5-5 [18.7 kB]
+Get:27 http://ftp.se.debian.org/debian/ unstable/main python powerpc 2.7.5-5 [146 kB]
+Get:28 http://ftp.se.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:29 http://ftp.se.debian.org/debian/ unstable/main gettext powerpc 0.18.3.2-1 [1146 kB]
+Get:30 http://ftp.se.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:31 http://ftp.se.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:32 http://ftp.se.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:33 http://ftp.se.debian.org/debian/ unstable/main diffstat powerpc 1.58-1 [27.8 kB]
+Get:34 http://ftp.se.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:35 http://ftp.se.debian.org/debian/ unstable/main zlib1g-dev powerpc 1:1.2.8.dfsg-1 [214 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 16.4 MB in 2s (7075 kB/s)
+Fetched 14.4 MB in 2s (5829 kB/s)
+(Reading database ... 11103 files and directories currently installed.)
+Preparing to unpack .../libtinfo5_5.9+20140118-1_powerpc.deb ...
+Unpacking libtinfo5:powerpc (5.9+20140118-1) over (5.9+20131221-1) ...
+Setting up libtinfo5:powerpc (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
+(Reading database ... 11103 files and directories currently installed.)
+Preparing to unpack .../libncurses5_5.9+20140118-1_powerpc.deb ...
+Unpacking libncurses5:powerpc (5.9+20140118-1) over (5.9+20131221-1) ...
+Setting up libncurses5:powerpc (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
 Selecting previously unselected package libncursesw5:powerpc.
-(Reading database ... 10923 files and directories currently installed.)
-Unpacking libncursesw5:powerpc (from .../libncursesw5_5.9-10_powerpc.deb) ...
+(Reading database ... 11103 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_powerpc.deb ...
+Unpacking libncursesw5:powerpc (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:powerpc.
-Unpacking libpipeline1:powerpc (from .../libpipeline1_1.2.2-1_powerpc.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_powerpc.deb ...
+Unpacking libpipeline1:powerpc (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:powerpc.
-Unpacking libssl1.0.0:powerpc (from .../libssl1.0.0_1.0.1c-4_powerpc.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_powerpc.deb ...
+Unpacking libssl1.0.0:powerpc (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_powerpc.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_powerpc.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_powerpc.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:powerpc.
-Unpacking libasprintf0c2:powerpc (from .../libasprintf0c2_0.18.1.1-9_powerpc.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_powerpc.deb ...
+Unpacking libasprintf0c2:powerpc (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:powerpc.
-Unpacking libmagic1:powerpc (from .../libmagic1_5.11-2_powerpc.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_powerpc.deb ...
+Unpacking libmagic1:powerpc (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:powerpc.
-Unpacking libsqlite3-0:powerpc (from .../libsqlite3-0_3.7.14.1-1_powerpc.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_powerpc.deb ...
+Unpacking libsqlite3-0:powerpc (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:powerpc.
-Unpacking libxml2:powerpc (from .../libxml2_2.8.0+dfsg1-6_powerpc.deb) ...
-Selecting previously unselected package libffi5:powerpc.
-Unpacking libffi5:powerpc (from .../libffi5_3.0.10-3_powerpc.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_powerpc.deb ...
+Unpacking libxml2:powerpc (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:powerpc.
+Preparing to unpack .../libffi6_3.0.13-12_powerpc.deb ...
+Unpacking libffi6:powerpc (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:powerpc.
-Unpacking libglib2.0-0:powerpc (from .../libglib2.0-0_2.33.12+really2.32.4-3_powerpc.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_powerpc.deb ...
+Unpacking libglib2.0-0:powerpc (2.38.2-5) ...
 Selecting previously unselected package libcroco3:powerpc.
-Unpacking libcroco3:powerpc (from .../libcroco3_0.6.6-1_powerpc.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_powerpc.deb ...
+Unpacking libcroco3:powerpc (0.6.8-2) ...
 Selecting previously unselected package libexpat1:powerpc.
-Unpacking libexpat1:powerpc (from .../libexpat1_2.1.0-1_powerpc.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_powerpc.deb ...
+Unpacking libexpat1:powerpc (2.1.0-4) ...
 Selecting previously unselected package libunistring0:powerpc.
-Unpacking libunistring0:powerpc (from .../libunistring0_0.9.3-5_powerpc.deb) ...
-Selecting previously unselected package libgettextpo0:powerpc.
-Unpacking libgettextpo0:powerpc (from .../libgettextpo0_0.18.1.1-9_powerpc.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_powerpc.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_powerpc.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_powerpc.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_powerpc.deb ...
+Unpacking libunistring0:powerpc (0.9.3-5) ...
+Selecting previously unselected package libpython2.7-minimal:powerpc.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_powerpc.deb ...
+Unpacking libpython2.7-minimal:powerpc (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_powerpc.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../file_5.11-2_powerpc.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_powerpc.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_powerpc.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_powerpc.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_powerpc.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:powerpc.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_powerpc.deb ...
+Unpacking libpython2.7-stdlib:powerpc (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_powerpc.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_powerpc.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_powerpc.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:powerpc.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_powerpc.deb ...
+Unpacking libpython-stdlib:powerpc (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_powerpc.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_powerpc.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_powerpc.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_powerpc.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_powerpc.deb) ...
+Preparing to unpack .../diffstat_1.58-1_powerpc.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:powerpc.
-Unpacking zlib1g-dev:powerpc (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_powerpc.deb) ...
-Setting up libncursesw5:powerpc (5.9-10) ...
-Setting up libpipeline1:powerpc (1.2.2-1) ...
-Setting up libssl1.0.0:powerpc (1.0.1c-4) ...
-Setting up libasprintf0c2:powerpc (0.18.1.1-9) ...
-Setting up libmagic1:powerpc (5.11-2) ...
-Setting up libsqlite3-0:powerpc (3.7.14.1-1) ...
-Setting up libxml2:powerpc (2.8.0+dfsg1-6) ...
-Setting up libffi5:powerpc (3.0.10-3) ...
-Setting up libglib2.0-0:powerpc (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:powerpc (0.6.6-1) ...
-Setting up libexpat1:powerpc (2.1.0-1) ...
-Setting up libunistring0:powerpc (0.9.3-5) ...
-Setting up libgettextpo0:powerpc (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_powerpc.deb ...
+Unpacking zlib1g-dev:powerpc (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:powerpc (5.9+20140118-1) ...
+Setting up libpipeline1:powerpc (1.2.6-2) ...
+Setting up libssl1.0.0:powerpc (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:powerpc (0.18.3.2-1) ...
+Setting up libmagic1:powerpc (1:5.14-2) ...
+Setting up libsqlite3-0:powerpc (3.8.3.1-1) ...
+Setting up libxml2:powerpc (2.9.1+dfsg1-3) ...
+Setting up libffi6:powerpc (3.0.13-12) ...
+Setting up libglib2.0-0:powerpc (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:powerpc (0.6.8-2) ...
+Setting up libexpat1:powerpc (2.1.0-4) ...
+Setting up libunistring0:powerpc (0.9.3-5) ...
+Setting up libpython2.7-minimal:powerpc (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:powerpc (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:powerpc (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:powerpc (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-powerpc64 powerpc (ppc64)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.8 g++-4.6_4.6.3-10 gcc-4.6_4.6.3-10 libc6-dev_2.13-35 libstdc++6_4.7.2-2 libstdc++6-4.6-dev_4.6.3-10 linux-libc-dev_3.2.30-1
-Package versions: apt_0.9.7.5 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.2 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.3-10 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.4 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.8 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5. [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:powerpc (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-powerpc64 powerpc (ppc64)
+Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.6 g++-4.8_4.8.2-14 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 linux-libc-dev_3.12.6-2
+Package versions: apt_0.9.14.2 base-files_7.2 base-passwd_3.5.31 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debconf-i18n_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.20-3 file_1:5.1 [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -328,35 +371,56 @@ Package versions: apt_0.9.7.5 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=6
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-powerpc-sbuild
+SCHROOT_CHROOT_NAME=sid-powerpc-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-powerpc-sbuild-d5854e9a-0bb2-49a6-b132-c79d18b2bb9e
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture powerpc
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -368,16 +432,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring docs/content/related-tools.rst
+Restoring docs/content/installation.rst
+Restoring README.md
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -390,41 +459,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -476,48 +589,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -529,6 +656,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -551,13 +680,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -567,31 +700,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -599,22 +745,48 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=]
+                (float) freqItr->second / (float) _tot_queries);
+                                                              ^
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat=]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -626,20 +798,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -651,7 +829,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -672,7 +850,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -756,6 +934,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -768,9 +948,9 @@ dh_strip -pbedtools
 	strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools
 dh_compress -pbedtools -X test 
 	cd debian/bedtools
-	chmod a-x usr/share/doc/bedtools/changelog usr/share/doc/bedtools/changelog.Debian
-	gzip -9nf usr/share/doc/bedtools/changelog usr/share/doc/bedtools/changelog.Debian
-	cd '/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0'
+	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
+	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -786,7 +966,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -797,6 +977,7 @@ dh_shlibdeps -pbedtools
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -805,64 +986,84 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_powerpc.deb'.
- dpkg-genchanges -B -mpowerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org> >../bedtools_2.17.0-1_powerpc.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_powerpc.deb'.
+ dpkg-genchanges -B -mpowerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org> >../bedtools_2.19.0-1_powerpc.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1135
+Build finished at 20140216-0745
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_powerpc.changes:
+──────────────────────────────────
 
-bedtools_2.17.0-1_powerpc.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: powerpc
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: powerpc Build Daemon (parry) <buildd_powerpc-parry at buildd.debian.org>
+Maintainer: powerpc Build Daemon (praetorius) <buildd_powerpc-praetorius at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 9f4317d029c006496afa0dbdc5fd3daafc730e72 412192 bedtools_2.17.0-1_powerpc.deb
+ ff7571f93d727d64b53f27a336408c5fd1f72aee 511054 bedtools_2.19.0-1_powerpc.deb
 Checksums-Sha256: 
- 0a65e3b8d342611b3b60b1bd59f93661333ea0d58f5343d69e16e24995b25f54 412192 bedtools_2.17.0-1_powerpc.deb
+ 5f4d91a38d409f313ded43e8639f74c6b8f8b0d6bebd12d14709d84b2ebe5023 511054 bedtools_2.19.0-1_powerpc.deb
 Files: 
- c33975f443920b33d83771a3a51f9174 412192 science optional bedtools_2.17.0-1_powerpc.deb
+ 5a6a798679f5691bcdc85be2b4af5c16 511054 science optional bedtools_2.19.0-1_powerpc.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_powerpc.deb
+bedtools_2.19.0-1_powerpc.deb
 ─────────────────────────────
 
  new debian package, version 2.0.
- size 412192 bytes: control archive= 4111 bytes.
+ size 511054 bytes: control archive=6290 bytes.
       32 bytes,     1 lines      conffiles            
-     835 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     836 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: powerpc
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1596
+ Installed-Size: 2412
  Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
@@ -875,204 +1076,270 @@ bedtools_2.17.0-1_powerpc.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./etc/
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./etc/bash_completion.d/
--rw-r--r-- root/root       638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/bin/
--rwxr-xr-x root/root        38 2012-11-04 11:35 ./usr/bin/linksBed
--rwxr-xr-x root/root        39 2012-11-04 11:35 ./usr/bin/windowBed
--rwxr-xr-x root/root        41 2012-11-04 11:35 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root        41 2012-11-04 11:35 ./usr/bin/coverageBed
--rwxr-xr-x root/root        38 2012-11-04 11:35 ./usr/bin/mergeBed
--rwxr-xr-x root/root        36 2012-11-04 11:35 ./usr/bin/nucBed
--rwxr-xr-x root/root        43 2012-11-04 11:35 ./usr/bin/bamToFastq
--rwxr-xr-x root/root        41 2012-11-04 11:35 ./usr/bin/bamToBed
--rwxr-xr-x root/root        44 2012-11-04 11:35 ./usr/bin/windowMaker
--rwxr-xr-x root/root        43 2012-11-04 11:35 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root        43 2012-11-04 11:35 ./usr/bin/complementBed
--rwxr-xr-x root/root        37 2012-11-04 11:35 ./usr/bin/slopBed
--rwxr-xr-x root/root        36 2012-11-04 11:35 ./usr/bin/tagBam
--rwxr-xr-x root/root        41 2012-11-04 11:35 ./usr/bin/bedToBam
--rwxr-xr-x root/root        44 2012-11-04 11:35 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root        42 2012-11-04 11:35 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root        39 2012-11-04 11:35 ./usr/bin/expandCols
--rwxr-xr-x root/root        41 2012-11-04 11:35 ./usr/bin/annotateBed
--rwxr-xr-x root/root        40 2012-11-04 11:35 ./usr/bin/getOverlap
--rwxr-xr-x root/root        40 2012-11-04 11:35 ./usr/bin/closestBed
--rwxr-xr-x root/root        39 2012-11-04 11:35 ./usr/bin/randomBed
--rwxr-xr-x root/root   1427928 2012-11-04 11:35 ./usr/bin/bedtools
--rwxr-xr-x root/root        42 2012-11-04 11:35 ./usr/bin/pairToBed
--rwxr-xr-x root/root        42 2012-11-04 11:35 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        43 2012-11-04 11:35 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        42 2012-11-04 11:35 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root        41 2012-11-04 11:35 ./usr/bin/multiBamCov
--rwxr-xr-x root/root        36 2012-11-04 11:35 ./usr/bin/mapBed
--rwxr-xr-x root/root        36 2012-11-04 11:35 ./usr/bin/bedToIgv
--rwxr-xr-x root/root        37 2012-11-04 11:35 ./usr/bin/sortBed
--rwxr-xr-x root/root        38 2012-11-04 11:35 ./usr/bin/flankBed
--rwxr-xr-x root/root        40 2012-11-04 11:35 ./usr/bin/clusterBed
--rwxr-xr-x root/root        40 2012-11-04 11:35 ./usr/bin/shuffleBed
--rwxr-xr-x root/root        43 2012-11-04 11:35 ./usr/bin/pairToPair
--rwxr-xr-x root/root        42 2012-11-04 11:35 ./usr/bin/intersectBed
--rwxr-xr-x root/root        41 2012-11-04 11:35 ./usr/bin/subtractBed
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
-drwxr-xr-x root/root         0 2012-11-04 11:35 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
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+-rw-r--r-- root/root        33 2014-02-09 02:29 ./usr/share/bedtools/test/map/b.vsorted.bed
+-rw-r--r-- root/root        55 2014-02-09 02:29 ./usr/share/bedtools/test/map/ivls2.bed
+-rw-r--r-- root/root       227 2014-02-09 02:29 ./usr/share/bedtools/test/map/values3.bed
+-rw-r--r-- root/root      1825 2014-02-09 02:29 ./usr/share/bedtools/test/map/values.bam
+-rw-r--r-- root/root       256 2014-02-09 02:29 ./usr/share/bedtools/test/map/values4.bed
+-rw-r--r-- root/root     17540 2014-02-09 02:29 ./usr/share/bedtools/test/map/test-map.sh
+-rw-r--r-- root/root      1815 2014-02-09 02:29 ./usr/share/bedtools/test/map/test.vcf
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/bamtobed/
+-rw-r--r-- root/root       176 2014-02-09 02:29 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
+-rw-r--r-- root/root       162 2014-02-09 02:29 ./usr/share/bedtools/test/bamtobed/one_block.sam
+-rw-r--r-- root/root       167 2014-02-09 02:29 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
+-rw-r--r-- root/root       540 2014-02-09 02:29 ./usr/share/bedtools/test/bamtobed/two_blocks_w_D.sam
+-rw-r--r-- root/root      5559 2014-02-09 02:29 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/
+-rw-r--r-- root/root      3537 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/test-reldist.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/expand/
+-rw-r--r-- root/root        52 2014-02-09 02:29 ./usr/share/bedtools/test/expand/expand.txt
+-rw-r--r-- root/root      1284 2014-02-09 02:29 ./usr/share/bedtools/test/expand/test-expand.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/bed12tobed6/
+-rw-r--r-- root/root        46 2014-02-09 02:29 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
+-rw-r--r-- root/root      1925 2014-02-09 02:29 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
+-rw-r--r-- root/root        60 2014-02-09 02:29 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
+-rw-r--r-- root/root        18 2014-02-09 02:29 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
+-rw-r--r-- root/root        52 2014-02-09 02:29 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/b.bed
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/a.bed
+-rw-r--r-- root/root        18 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/d.bed
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/c.bed
+-rw-r--r-- root/root      3077 2014-02-09 02:29 ./usr/share/bedtools/test/subtract/test-subtract.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/closest/
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/closest/b.bed
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
+-rw-r--r-- root/root       144 2014-02-09 02:29 ./usr/share/bedtools/test/closest/close-b.bed
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/closest/a.bed
+-rw-r--r-- root/root      4716 2014-02-09 02:29 ./usr/share/bedtools/test/closest/test-closest.sh
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/closest/b.names.bed
+-rw-r--r-- root/root        35 2014-02-09 02:29 ./usr/share/bedtools/test/closest/a.names.bed
+-rw-r--r-- root/root       144 2014-02-09 02:29 ./usr/share/bedtools/test/closest/close-a.bed
+-rw-r--r-- root/root        20 2014-02-09 02:29 ./usr/share/bedtools/test/closest/strand-test-b.bed
+-rw-r--r-- root/root        21 2014-02-09 02:29 ./usr/share/bedtools/test/closest/strand-test-a.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/slop/
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/slop/tiny.genome
+-rw-r--r-- root/root        41 2014-02-09 02:29 ./usr/share/bedtools/test/slop/a.bed
+-rw-r--r-- root/root      3609 2014-02-09 02:29 ./usr/share/bedtools/test/slop/test-slop.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/
+-rw-r--r-- root/root       117 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/blocks.bed
+-rw-r--r-- root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/t.bed
+-rw-r--r-- root/root      1698 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
+-rw-r--r-- root/root        16 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/t.fa.fai
+-rw-r--r-- root/root        61 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/t.fa
+-rw-r--r-- root/root        87 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/t_fH.fa
+-rw-r--r-- root/root        43 2014-02-09 02:29 ./usr/share/bedtools/test/getfasta/t_fH.fa.fai
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/general/
+-rw-r--r-- root/root      2847 2014-02-09 02:29 ./usr/share/bedtools/test/general/test-general.sh
+-rw-r--r-- root/root        53 2014-02-09 02:29 ./usr/share/bedtools/test/general/non-empty.bed.gz
+-rw-r--r-- root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/general/empty.bed
+-rw-r--r-- root/root      1453 2014-02-09 02:29 ./usr/share/bedtools/test/test.sh
+drwxr-xr-x root/root         0 2014-02-16 07:45 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 07:45 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-powerpc-sbuild-39fd857a-c983-41c7-b40a-c4c564f04ace/build/buildd-bedtools_2.17.0-1-powerpc-P2ueRr
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: powerpc
-Build-Space: 86684
-Build-Time: 151
+Build Architecture: powerpc
+Build-Space: 114484
+Build-Time: 423
 Distribution: sid
-Install-Time: 84
-Job: bedtools_2.17.0-1
+Host Architecture: powerpc
+Install-Time: 49
+Job: bedtools_2.19.0-1
+Machine Architecture: powerpc
 Package: bedtools
-Package-Time: 254
-Source-Version: 2.17.0-1
-Space: 86684
+Package-Time: 504
+Source-Version: 2.19.0-1
+Space: 114484
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1135
-Build needed 00:04:14, 86684k disc space
-Signature with key '9811BFE6' requested:
+Finished at 20140216-0745
+Build needed 00:08:24, 114484k disc space
+Signature with key '0E6E7223' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_powerpc.changes 0E6E7223
 
+Successfully signed changes file
diff --git a/s390x.log b/s390x.log
index 6661869..6e12573 100644
--- a/s390x.log
+++ b/s390x.log
@@ -1,62 +1,74 @@
-From buildd at zemlinsky.debian.org Sun Nov 04 11:36:33 2012
-Return-path: <buildd at zemlinsky.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at zemlinsky.debian.org>)
-	id 1TUyVF-0001W5-G7
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:36:33 +0000
-Received: from zemlinsky.debian.org ([2001:7c0:400:1337::818f:a006])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=zemlinsky.debian.org,
-	EMAIL=hostmaster at zemlinsky.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at zemlinsky.debian.org>)
-	id 1TUyVE-0005N0-EK; Sun, 04 Nov 2012 11:36:32 +0000
-Received: from buildd by zemlinsky.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at zemlinsky.debian.org>)
-	id 1TUyVD-0007CR-Sh; Sun, 04 Nov 2012 11:36:31 +0000
-Message-Id: <E1TUyVD-0007CR-Sh at zemlinsky.debian.org>
-MIME-Version: 1.0
+From buildd at zandonai.debian.org Sun Feb 16 07:41:26 2014
+Return-path: <buildd at zandonai.debian.org>
+Received: from muffat.debian.org ([2607:f8f0:610:4000:6564:a62:ce0c:1392])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at zandonai.debian.org>)
+ id 1WEwLu-0005PG-2Z
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:41:26 +0000
+Received: from zandonai.debian.org ([80.245.147.46])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=zandonai.debian.org, EMAIL=hostmaster at zandonai.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at zandonai.debian.org>)
+ id 1WEwLr-0007CD-BC
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:41:23 +0000
+Received: from buildd by zandonai.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at zandonai.debian.org>) id 1WEwLn-00007W-Nu
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:41:19 +0000
 Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Nov 2012 11:36:31 +0000
-From: buildd on zemlinsky <buildd at zemlinsky.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on s390x (dist=sid)
-Key-Id: 6A3F7E2B
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 07:41:19 +0000
+From: buildd on zandonai <buildd at zandonai.debian.org>
+To: logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on s390x (dist=sid)
+Key-Id: 06DAB0BE
+Message-Id: <E1WEwLn-00007W-Nu at zandonai.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zemlinsky.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on zandonai.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (s390x)                                  04 Nov 2012 11:32 ║
+║ bedtools 2.19.0-1 (s390x)                                  16 Feb 2014 07:37 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: s390x
-Hit http://ftp-stud.hs-esslingen.de unstable InRelease
-Hit http://ftp-stud.hs-esslingen.de unstable/main Sources
-Hit http://ftp-stud.hs-esslingen.de unstable/contrib Sources
-Get:1 http://ftp-stud.hs-esslingen.de unstable/non-free Sources [101 kB]
-Hit http://ftp-stud.hs-esslingen.de unstable/main s390x Packages
-Hit http://ftp-stud.hs-esslingen.de unstable/contrib s390x Packages
-Hit http://incoming.debian.org unstable InRelease
-Ign http://incoming.debian.org  InRelease
-Hit http://incoming.debian.org unstable/main Sources
-Hit http://incoming.debian.org unstable/contrib Sources
-Get:2 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Hit http://incoming.debian.org unstable/main s390x Packages
-Hit http://incoming.debian.org unstable/contrib s390x Packages
-Get:3 http://incoming.debian.org  Release.gpg [836 B]
-Get:4 http://incoming.debian.org  Release [1141 B]
-Get:5 http://incoming.debian.org  Sources [16.2 kB]
-Get:6 http://incoming.debian.org  Packages [140 kB]
-Fetched 361 kB in 1s (192 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: s390
+Host Architecture: s390x
+Build Architecture: s390x
+
+I: NOTICE: Log filtering will replace 'build/bedtools-RfZM0q/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-RfZM0q' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-s390x-sbuild-cfa0ccd0-a37e-40ad-b5f6-97d0425ffd48/sid-s390x-sbuild' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://ftp.de.debian.org unstable InRelease [199 kB]
+Get:2 http://ftp.de.debian.org unstable/main Sources [7001 kB]
+Get:3 http://incoming.debian.org unstable InRelease [199 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:6 http://ftp.de.debian.org unstable/contrib Sources [58.1 kB]
+Get:7 http://ftp.de.debian.org unstable/non-free Sources [105 kB]
+Get:8 http://ftp.de.debian.org unstable/main s390x Packages [6144 kB]
+Get:9 http://ftp.de.debian.org unstable/contrib s390x Packages [41.9 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:12 http://incoming.debian.org unstable/main s390x Packages [6144 kB]
+Get:13 http://incoming.debian.org unstable/contrib s390x Packages [41.9 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main s390x Packages [57.9 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib s390x Packages [1076 B]
+Fetched 27.3 MB in 25s (1051 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -76,233 +88,266 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (657 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 8s (514 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-HJPDea/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
+Need to get 0 B/816 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 10918 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-uszfN4/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
-  python-minimal python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
-  libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
-  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
-  po-debconf python python-minimal python2.7 python2.7-minimal quilt
-  zlib1g-dev
-0 upgraded, 33 newly installed, 0 to remove and 44 not upgraded.
-Need to get 17.2 MB of archives.
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded.
+Need to get 14.6 MB/14.6 MB of archives.
 After this operation, 50.3 MB of additional disk space will be used.
-Get:1 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libncursesw5 s390x 5.9-10 [144 kB]
-Get:2 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpipeline1 s390x 1.2.2-1 [41.0 kB]
-Get:3 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libssl1.0.0 s390x 1.0.1c-4 [1259 kB]
-Get:4 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-9 [26.8 kB]
-Get:5 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libmagic1 s390x 5.11-2 [200 kB]
-Get:6 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpcre3 s390x 1:8.31-1 [259 kB]
-Get:7 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libsqlite3-0 s390x 3.7.14.1-1 [468 kB]
-Get:8 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-6 [901 kB]
-Get:9 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:10 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libglib2.0-0 s390x 2.33.12+really2.32.4-3 [1798 kB]
-Get:11 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libcroco3 s390x 0.6.6-1 [129 kB]
-Get:12 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libexpat1 s390x 2.1.0-1 [144 kB]
-Get:13 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:14 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-9 [158 kB]
-Get:15 http://ftp-stud.hs-esslingen.de/debian/ unstable/main bsdmainutils s390x 9.0.3 [215 kB]
-Get:16 http://ftp-stud.hs-esslingen.de/debian/ unstable/main groff-base s390x 1.21-9 [1187 kB]
-Get:17 http://ftp-stud.hs-esslingen.de/debian/ unstable/main man-db s390x 2.6.3-1 [1071 kB]
-Get:18 http://ftp-stud.hs-esslingen.de/debian/ unstable/main file s390x 5.11-2 [51.9 kB]
-Get:19 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext-base s390x 0.18.1.1-9 [156 kB]
-Get:20 http://ftp-stud.hs-esslingen.de/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:21 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python2.7-minimal s390x 2.7.3-5 [1747 kB]
-Get:22 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python2.7 s390x 2.7.3-5 [2702 kB]
-Get:23 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:24 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:25 http://ftp-stud.hs-esslingen.de/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:26 http://ftp-stud.hs-esslingen.de/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:27 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext s390x 0.18.1.1-9 [2037 kB]
-Get:28 http://ftp-stud.hs-esslingen.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:29 http://ftp-stud.hs-esslingen.de/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:30 http://ftp-stud.hs-esslingen.de/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:31 http://ftp-stud.hs-esslingen.de/debian/ unstable/main diffstat s390x 1.55-3 [30.5 kB]
-Get:32 http://ftp-stud.hs-esslingen.de/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:33 http://ftp-stud.hs-esslingen.de/debian/ unstable/main zlib1g-dev s390x 1:1.2.7.dfsg-13 [219 kB]
+Get:1 http://ftp.de.debian.org/debian/ unstable/main libncursesw5 s390x 5.9+20140118-1 [117 kB]
+Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390x 1.2.6-2 [25.3 kB]
+Get:3 http://ftp.de.debian.org/debian/ unstable/main libssl1.0.0 s390x 1.0.1f-1 [954 kB]
+Get:4 http://ftp.de.debian.org/debian/ unstable/main groff-base s390x 1.22.2-5 [1129 kB]
+Get:5 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390x 9.0.5 [216 kB]
+Get:6 http://ftp.de.debian.org/debian/ unstable/main man-db s390x 2.6.6-1 [982 kB]
+Get:7 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390x 0.18.3.2-1 [29.3 kB]
+Get:8 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390x 1:5.14-2 [215 kB]
+Get:9 http://ftp.de.debian.org/debian/ unstable/main libsqlite3-0 s390x 3.8.3.1-1 [407 kB]
+Get:10 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390x 2.9.1+dfsg1-3 [918 kB]
+Get:11 http://ftp.de.debian.org/debian/ unstable/main libffi6 s390x 3.0.13-12 [18.2 kB]
+Get:12 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390x 2.38.2-5 [2195 kB]
+Get:13 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390x 0.6.8-2 [130 kB]
+Get:14 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390x 2.1.0-4 [145 kB]
+Get:15 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
+Get:16 http://ftp.de.debian.org/debian/ unstable/main libpython2.7-minimal s390x 2.7.6-5 [346 kB]
+Get:17 http://ftp.de.debian.org/debian/ unstable/main python2.7-minimal s390x 2.7.6-5 [1041 kB]
+Get:18 http://ftp.de.debian.org/debian/ unstable/main file s390x 1:5.14-2 [54.4 kB]
+Get:19 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390x 0.18.3.2-1 [116 kB]
+Get:20 http://ftp.de.debian.org/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:21 http://ftp.de.debian.org/debian/ unstable/main libpython2.7-stdlib s390x 2.7.6-5 [1801 kB]
+Get:22 http://ftp.de.debian.org/debian/ unstable/main python2.7 s390x 2.7.6-5 [235 kB]
+Get:23 http://ftp.de.debian.org/debian/ unstable/main python-minimal s390x 2.7.5-5 [39.1 kB]
+Get:24 http://ftp.de.debian.org/debian/ unstable/main libpython-stdlib s390x 2.7.5-5 [18.6 kB]
+Get:25 http://ftp.de.debian.org/debian/ unstable/main python s390x 2.7.5-5 [146 kB]
+Get:26 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:27 http://ftp.de.debian.org/debian/ unstable/main gettext s390x 0.18.3.2-1 [1202 kB]
+Get:28 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:29 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:30 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:31 http://ftp.de.debian.org/debian/ unstable/main diffstat s390x 1.58-1 [29.4 kB]
+Get:32 http://ftp.de.debian.org/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:33 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390x 1:1.2.8.dfsg-1 [221 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 17.2 MB in 2s (7351 kB/s)
+Fetched 14.6 MB in 5s (2639 kB/s)
 Selecting previously unselected package libncursesw5:s390x.
-(Reading database ... 10810 files and directories currently installed.)
-Unpacking libncursesw5:s390x (from .../libncursesw5_5.9-10_s390x.deb) ...
+(Reading database ... 10918 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_s390x.deb ...
+Unpacking libncursesw5:s390x (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:s390x.
-Unpacking libpipeline1:s390x (from .../libpipeline1_1.2.2-1_s390x.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_s390x.deb ...
+Unpacking libpipeline1:s390x (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:s390x.
-Unpacking libssl1.0.0:s390x (from .../libssl1.0.0_1.0.1c-4_s390x.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_s390x.deb ...
+Unpacking libssl1.0.0:s390x (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_s390x.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_s390x.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_s390x.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:s390x.
-Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-9_s390x.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_s390x.deb ...
+Unpacking libasprintf0c2:s390x (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:s390x.
-Unpacking libmagic1:s390x (from .../libmagic1_5.11-2_s390x.deb) ...
-Selecting previously unselected package libpcre3:s390x.
-Unpacking libpcre3:s390x (from .../libpcre3_1%3a8.31-1_s390x.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_s390x.deb ...
+Unpacking libmagic1:s390x (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:s390x.
-Unpacking libsqlite3-0:s390x (from .../libsqlite3-0_3.7.14.1-1_s390x.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_s390x.deb ...
+Unpacking libsqlite3-0:s390x (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:s390x.
-Unpacking libxml2:s390x (from .../libxml2_2.8.0+dfsg1-6_s390x.deb) ...
-Selecting previously unselected package libffi5:s390x.
-Unpacking libffi5:s390x (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_s390x.deb ...
+Unpacking libxml2:s390x (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:s390x.
+Preparing to unpack .../libffi6_3.0.13-12_s390x.deb ...
+Unpacking libffi6:s390x (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:s390x.
-Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.33.12+really2.32.4-3_s390x.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_s390x.deb ...
+Unpacking libglib2.0-0:s390x (2.38.2-5) ...
 Selecting previously unselected package libcroco3:s390x.
-Unpacking libcroco3:s390x (from .../libcroco3_0.6.6-1_s390x.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_s390x.deb ...
+Unpacking libcroco3:s390x (0.6.8-2) ...
 Selecting previously unselected package libexpat1:s390x.
-Unpacking libexpat1:s390x (from .../libexpat1_2.1.0-1_s390x.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_s390x.deb ...
+Unpacking libexpat1:s390x (2.1.0-4) ...
 Selecting previously unselected package libunistring0:s390x.
-Unpacking libunistring0:s390x (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
-Selecting previously unselected package libgettextpo0:s390x.
-Unpacking libgettextpo0:s390x (from .../libgettextpo0_0.18.1.1-9_s390x.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_s390x.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_s390x.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_s390x.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5+b1_s390x.deb ...
+Unpacking libunistring0:s390x (0.9.3-5+b1) ...
+Selecting previously unselected package libpython2.7-minimal:s390x.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_s390x.deb ...
+Unpacking libpython2.7-minimal:s390x (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_s390x.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_s390x.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_s390x.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_s390x.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_s390x.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_s390x.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:s390x.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_s390x.deb ...
+Unpacking libpython2.7-stdlib:s390x (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_s390x.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_s390x.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_s390x.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:s390x.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_s390x.deb ...
+Unpacking libpython-stdlib:s390x (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_s390x.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15+b1_s390x.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_s390x.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_s390x.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_s390x.deb) ...
+Preparing to unpack .../diffstat_1.58-1_s390x.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:s390x.
-Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_s390x.deb) ...
-Setting up libncursesw5:s390x (5.9-10) ...
-Setting up libpipeline1:s390x (1.2.2-1) ...
-Setting up libssl1.0.0:s390x (1.0.1c-4) ...
-Setting up libasprintf0c2:s390x (0.18.1.1-9) ...
-Setting up libmagic1:s390x (5.11-2) ...
-Setting up libpcre3:s390x (1:8.31-1) ...
-Setting up libsqlite3-0:s390x (3.7.14.1-1) ...
-Setting up libxml2:s390x (2.8.0+dfsg1-6) ...
-Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:s390x (0.6.6-1) ...
-Setting up libexpat1:s390x (2.1.0-1) ...
-Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libgettextpo0:s390x (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_s390x.deb ...
+Unpacking zlib1g-dev:s390x (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:s390x (5.9+20140118-1) ...
+Setting up libpipeline1:s390x (1.2.6-2) ...
+Setting up libssl1.0.0:s390x (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:s390x (0.18.3.2-1) ...
+Setting up libmagic1:s390x (1:5.14-2) ...
+Setting up libsqlite3-0:s390x (3.8.3.1-1) ...
+Setting up libxml2:s390x (2.9.1+dfsg1-3) ...
+Setting up libffi6:s390x (3.0.13-12) ...
+Setting up libglib2.0-0:s390x (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:s390x (0.6.8-2) ...
+Setting up libexpat1:s390x (2.1.0-4) ...
+Setting up libunistring0:s390x (0.9.3-5+b1) ...
+Setting up libpython2.7-minimal:s390x (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:s390x (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:s390x (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:s390x (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.8 g++-4.6_4.6.3-9 gcc-4.6_4.6.3-9 libc6-dev_2.13-35 libstdc++6_4.7.1-7 libstdc++6-4.6-dev_4.6.3-9 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-9 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.8 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_ [...]
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:s390x (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Kernel: Linux 3.2.0-4-s390x s390 (s390x)
+Toolchain package versions: binutils_2.24-3 dpkg-dev_1.17.6 g++-4.8_4.8.2-15 gcc-4.8_4.8.2-15 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-15 libstdc++6_4.8.2-15 linux-libc-dev_3.12.9-1
+Package versions: apt_0.9.15.2 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-3 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.6 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.8.2-2 cpp-4.8_4.8.2-15 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-3 e2fsprogs_1.42.9-3 fakeroot_1.20-3 file_1:5.14-2 findutils_4.4.2- [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -312,35 +357,56 @@ Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-s390x-sbuild
+SCHROOT_CHROOT_NAME=sid-s390x-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-s390x-sbuild-cfa0ccd0-a37e-40ad-b5f6-97d0425ffd48
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture s390x
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -352,16 +418,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/related-tools.rst
+Restoring docs/content/installation.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -374,41 +445,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -432,6 +547,10 @@ g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-s
  * compiling BamWriter_p.cpp
  * compiling BamIndexFactory_p.cpp
  * compiling BamStandardIndex_p.cpp
+src/api/internal/index/BamStandardIndex_p.cpp: In member function 'void BamTools::Internal::BamStandardIndex::WriteLinearOffsets(const int&, BamTools::Internal::BaiLinearOffsetVector&)':
+src/api/internal/index/BamStandardIndex_p.cpp:958:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
+     if ( numBytesWritten != (sizeof(offsetCount) + linearOffsets.size()*sizeof(uint64_t)) )
+                                                                                         ^
  * compiling BamToolsIndex_p.cpp
  * compiling BamDeviceFactory_p.cpp
  * compiling BamFile_p.cpp
@@ -439,6 +558,8 @@ g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-s
  * compiling BamHttp_p.cpp
 src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendRequest(size_t)':
 src/api/internal/io/BamHttp_p.cpp:396:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
+     return ( WriteToSocket(requestHeader.c_str(), headerSize) == headerSize );
+                                                                  ^
  * compiling BamPipe_p.cpp
  * compiling BgzfStream_p.cpp
  * compiling ByteArray_p.cpp
@@ -450,8 +571,6 @@ src/api/internal/io/BamHttp_p.cpp:396:66: warning: comparison between signed and
  * compiling TcpSocketEngine_p.cpp
  * compiling TcpSocketEngine_unix_p.cpp
  * compiling TcpSocket_p.cpp
-src/api/internal/io/TcpSocket_p.cpp: In member function 'std::string BamTools::Internal::TcpSocket::ReadLine(int64_t)':
-src/api/internal/io/TcpSocket_p.cpp:336:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
  * compiling SamFormatParser_p.cpp
  * compiling SamFormatPrinter_p.cpp
  * compiling SamHeaderValidator_p.cpp
@@ -464,48 +583,62 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:29:12: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     length = NULL;
+            ^
+Fasta.cpp:32:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_blen = NULL;
+               ^
+Fasta.cpp:33:15: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+     line_len  = NULL;
+               ^
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+                     long c2;
+                          ^
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
 annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
+     bool haveTitles     = false;
+          ^
   * compiling annotateBed.cpp
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+     bool useAlignmentScore = false;
+          ^
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
 bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
+     bool haveFastq2    = false;
+          ^
   * compiling bamToFastq.cpp
 - Building in src/bedToBam
   * compiling bedToBam.cpp
 bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
 bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedpeToBam
   * compiling bedpeToBam.cpp
 bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
 bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
+     bool haveMapQual     = false;
+          ^
 - Building in src/bedToIgv
   * compiling bedToIgv.cpp
 - Building in src/bed12ToBed6
@@ -517,6 +650,8 @@ bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused
   * compiling clusterMain.cpp
 clusterMain.cpp: In function 'int cluster_main(int, char**)':
 clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling clusterBed.cpp
 - Building in src/complementBed
   * compiling complementMain.cpp
@@ -539,13 +674,17 @@ clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wu
   * compiling getOverlap.cpp
 getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
 getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
+     bool haveColumns = false;
+          ^
 - Building in src/groupBy
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+     bool haveOps           = true;
+          ^
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -555,31 +694,44 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
 mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
+     bool haveMaxDistance = false;
+          ^
   * compiling mergeBed.cpp
 - Building in src/multiBamCov
   * compiling multiBamCovMain.cpp
 multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
 multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
+     bool haveBed           = false;
+          ^
 multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
+     bool haveBams          = false;
+          ^
 multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling multiBamCov.cpp
 - Building in src/multiIntersectBed
   * compiling multiIntersectBedMain.cpp
 multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
 multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -587,22 +739,43 @@ multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used
   * compiling pairToBedMain.cpp
 pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
 pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction       = false;
+          ^
   * compiling pairToBed.cpp
 pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
 pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     CHRPOS spanLength = 0;
+            ^
 pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
 pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
+     int spanLength = 0;
+         ^
 - Building in src/pairToPair
   * compiling pairToPairMain.cpp
 pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
 pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction = false;
+          ^
   * compiling pairToPair.cpp
 pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
 pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
+         bool found1 = false;
+              ^
 pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
+         bool found2 = false;
+              ^
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -614,20 +787,26 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
 tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
 tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
+     bool haveFraction     = false;
+          ^
   * compiling tagBam.cpp
 - Building in src/unionBedGraphs
   * compiling unionBedGraphsMain.cpp
 unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
 unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
+     bool haveFiles         = false;
+          ^
 unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
+     bool haveGenome        = false;
+          ^
 unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
+     bool haveFiller        = true;
+          ^
   * compiling unionBedGraphs.cpp
 - Building in src/windowBed
   * compiling windowMain.cpp
@@ -639,7 +818,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -660,7 +839,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -744,6 +923,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -758,7 +939,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -774,7 +955,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -785,6 +966,7 @@ dh_shlibdeps -pbedtools
 dh_gencontrol -pbedtools  
 	echo misc:Depends= >> debian/bedtools.substvars
 	dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
+dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
 	chmod 644 debian/bedtools/DEBIAN/control
 	chown 0:0 debian/bedtools/DEBIAN/control
 dh_md5sums -pbedtools 
@@ -793,65 +975,85 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org> >../bedtools_2.17.0-1_s390x.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_s390x.deb'.
+ dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../bedtools_2.19.0-1_s390x.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1136
+Build finished at 20140216-0741
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_s390x.changes:
+────────────────────────────────
 
-bedtools_2.17.0-1_s390x.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: s390x
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
-Maintainer: s390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org>
+Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- ad9c92ce690adb264c4f552c32926fa231b8543e 458538 bedtools_2.17.0-1_s390x.deb
+ a556069d33662cf11cac61129bafd6039627a4eb 559718 bedtools_2.19.0-1_s390x.deb
 Checksums-Sha256: 
- 9e879db814882792a2047e2f87908db888ee3d04a12f077ce251d5f23a3a00a8 458538 bedtools_2.17.0-1_s390x.deb
+ d84a86d056e0fc368b7c7492a3dcf0dca27a0c531150c90b7481a6b67a871be9 559718 bedtools_2.19.0-1_s390x.deb
 Files: 
- 5cb3cb78aa7b4ff5dc8140a8188817da 458538 science optional bedtools_2.17.0-1_s390x.deb
+ 6f24c6316012b2534abf7e9472bce929 559718 science optional bedtools_2.19.0-1_s390x.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_s390x.deb
+bedtools_2.19.0-1_s390x.deb
 ───────────────────────────
 
  new debian package, version 2.0.
- size 458538 bytes: control archive= 4106 bytes.
+ size 559718 bytes: control archive=6285 bytes.
       32 bytes,     1 lines      conffiles            
      834 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: s390x
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1777
- Depends: libc6 (>= 2.13), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
+ Installed-Size: 2609
+ Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
  Priority: optional
@@ -863,203 +1065,270 @@ bedtools_2.17.0-1_s390x.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 11:36 ./
-drwxr-xr-x root/root         0 2012-11-04 11:36 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:36 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:36 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
-drwxr-xr-x root/root         0 2012-11-04 11:36 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root      1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
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--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
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+-rw-r--r-- root/root        38 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a.bed
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/d.bed
+-rw-r--r-- root/root        24 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed6.strand.bed
+-rw-r--r-- root/root       167 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/two_blocks.sam
+-rw-r--r-- root/root        18 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/c.bed
+-rw-r--r-- root/root        26 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/j1.bed
+-rw-r--r-- root/root        60 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
+-rw-r--r-- root/root      1805 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/two_blocks_partial.bam
+-rw-r--r-- root/root       244 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/chromOrderB.bed
+-rw-r--r-- root/root     10624 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_withLargeHeader_bgzipped.bed.gz
+-rwxr-xr-x root/root     22827 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/new_test-intersect.sh
+-rw-r--r-- root/root       176 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks.sam
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
+-rw-r--r-- root/root        48 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed6.strand2.bed
+-rw-r--r-- root/root        76 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/b.bed
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed3.bed
+-rw-r--r-- root/root      1804 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_match.bam
+-rw-r--r-- root/root       746 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/gdc.gff
+-rw-r--r-- root/root      1739 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a.bam
+-rw-r--r-- root/root       544 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/gdc_exp
+-rw-r--r-- root/root      1735 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/aVSb.bam
+-rw-r--r-- root/root        13 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/gdc_one.bed
+-rwxr-xr-x root/root      8883 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/performanceTest.sh
+-rw-r--r-- root/root      1972 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/human.hg19.genome
+-rw-r--r-- root/root      1051 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/queryUnmappedMateMappedCoordsInvalid.bam
+-rw-r--r-- root/root        85 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_bgzipped.bed.gz
+-rw-r--r-- root/root      2564 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/oneUnmapped.bam
+-rw-r--r-- root/root        44 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/recordsOutOfOrder.bed
+-rw-r--r-- root/root        17 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed4.bed
+-rw-r--r-- root/root     10384 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_withLargeHeader_gzipped.bed.gz
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/a_gzipped.bed.gz
+-rw-r--r-- root/root       255 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
+-rw-r--r-- root/root        22 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/bed5.bed
+-rw-r--r-- root/root        63 2014-02-09 02:29 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
+-rw-r--r-- root/root      1453 2014-02-09 02:29 ./usr/share/bedtools/test/test.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/merge/
+-rw-r--r-- root/root        57 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.names.bed
+-rw-r--r-- root/root        46 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.bed
+-rw-r--r-- root/root       147 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.full.bed
+-rw-r--r-- root/root      4062 2014-02-09 02:29 ./usr/share/bedtools/test/merge/test-merge.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/expand/
+-rw-r--r-- root/root      1284 2014-02-09 02:29 ./usr/share/bedtools/test/expand/test-expand.sh
+-rw-r--r-- root/root        52 2014-02-09 02:29 ./usr/share/bedtools/test/expand/expand.txt
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/
+-rw-r--r-- root/root      3537 2014-02-09 02:29 ./usr/share/bedtools/test/reldist/test-reldist.sh
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/groupBy/
+-rw-r--r-- root/root       860 2014-02-09 02:29 ./usr/share/bedtools/test/groupBy/test-groupby.sh
+-rw-r--r-- root/root       250 2014-02-09 02:29 ./usr/share/bedtools/test/groupBy/values3.header.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/closest/
+-rw-r--r-- root/root        35 2014-02-09 02:29 ./usr/share/bedtools/test/closest/a.names.bed
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/closest/a.bed
+-rw-r--r-- root/root       144 2014-02-09 02:29 ./usr/share/bedtools/test/closest/close-a.bed
+-rw-r--r-- root/root       144 2014-02-09 02:29 ./usr/share/bedtools/test/closest/close-b.bed
+-rw-r--r-- root/root        21 2014-02-09 02:29 ./usr/share/bedtools/test/closest/strand-test-a.bed
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/closest/b.bed
+-rw-r--r-- root/root      4716 2014-02-09 02:29 ./usr/share/bedtools/test/closest/test-closest.sh
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
+-rw-r--r-- root/root        36 2014-02-09 02:29 ./usr/share/bedtools/test/closest/b.names.bed
+-rw-r--r-- root/root        20 2014-02-09 02:29 ./usr/share/bedtools/test/closest/strand-test-b.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/general/
+-rw-r--r-- root/root      2847 2014-02-09 02:29 ./usr/share/bedtools/test/general/test-general.sh
+-rw-r--r-- root/root        53 2014-02-09 02:29 ./usr/share/bedtools/test/general/non-empty.bed.gz
+-rw-r--r-- root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/general/empty.bed
+drwxr-xr-x root/root         0 2014-02-16 07:41 ./usr/share/doc/
+drwxr-xr-x root/root         0 2014-02-16 07:41 ./usr/share/doc/bedtools/
+-rw-r--r-- root/root     14454 2014-02-09 02:29 ./usr/share/doc/bedtools/changelog.gz
+-rw-r--r-- root/root      1350 2014-02-15 10:39 ./usr/share/doc/bedtools/changelog.Debian.gz
+-rw-r--r-- root/root      5392 2014-02-15 10:24 ./usr/share/doc/bedtools/copyright
+-rw-r--r-- root/root      3288 2014-02-16 07:38 ./usr/share/doc/bedtools/README.md
+drwxr-xr-x root/root         0 2014-02-16 07:41 ./etc/
+drwxr-xr-x root/root         0 2014-02-16 07:41 ./etc/bash_completion.d/
+-rw-r--r-- root/root       638 2014-02-15 10:24 ./etc/bash_completion.d/bedtools
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-e7105a7b-c4bd-42e9-b131-51e513ead6f2/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: s390x
-Build-Space: 129412
-Build-Time: 238
+Build Architecture: s390x
+Build-Space: 164800
+Build-Time: 185
 Distribution: sid
-Install-Time: 21
-Job: bedtools_2.17.0-1
+Host Architecture: s390x
+Install-Time: 18
+Job: bedtools_2.19.0-1
+Machine Architecture: s390
 Package: bedtools
-Package-Time: 269
-Source-Version: 2.17.0-1
-Space: 129412
+Package-Time: 248
+Source-Version: 2.19.0-1
+Space: 164800
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1136
-Build needed 00:04:29, 129412k disc space
-Signature with key '6A3F7E2B' requested:
+Finished at 20140216-0741
+Build needed 00:04:08, 164800k disc space
+Signature with key '06DAB0BE' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_s390x.changes 06DAB0BE
+
+Successfully signed changes file
diff --git a/sparc.log b/sparc.log
index f9e9c2e..aa4737c 100644
--- a/sparc.log
+++ b/sparc.log
@@ -1,62 +1,74 @@
-From buildd at lebrun.debian.org Sun Nov 04 11:45:52 2012
+From buildd at lebrun.debian.org Sun Feb 16 07:56:44 2014
 Return-path: <buildd at lebrun.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=merikanto.debian.org,
-	EMAIL=hostmaster at merikanto.debian.org (verified)
-	by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
-	id 1TUyeG-0002op-Ak
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:45:52 +0000
+Received: from muffat.debian.org ([2607:f8f0:610:4000:6564:a62:ce0c:1392])
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=muffat.debian.org, EMAIL=hostmaster at muffat.debian.org (verified)
+ by wuiet.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at lebrun.debian.org>)
+ id 1WEwai-0006a9-6V
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:56:44 +0000
 Received: from [2001:b68:ff:5:203:baff:fe59:abad] (helo=lebrun.debian.org)
-	from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
-	CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
-	by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
-	(Exim 4.72) (envelope-from <buildd at lebrun.debian.org>)
-	id 1TUyeF-00063n-7i
-	for logs at buildd.debian.org; Sun, 04 Nov 2012 11:45:51 +0000
-Received: from buildd by lebrun.debian.org with local (Exim 4.72)
-	(envelope-from <buildd at lebrun.debian.org>)
-	id 1TUyeC-0001sX-Lt; Sun, 04 Nov 2012 11:45:48 +0000
-Message-Id: <E1TUyeC-0001sX-Lt at lebrun.debian.org>
-MIME-Version: 1.0
+ from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
+ CN=lebrun.debian.org, EMAIL=hostmaster at lebrun.debian.org (verified)
+ by muffat.debian.org with esmtps (TLS1.2:DHE_RSA_AES_128_CBC_SHA1:128)
+ (Exim 4.80) (envelope-from <buildd at lebrun.debian.org>)
+ id 1WEwaf-0007zi-SK
+ for logs at buildd.debian.org; Sun, 16 Feb 2014 07:56:42 +0000
+Received: from buildd by lebrun.debian.org with local (Exim 4.80)
+ (envelope-from <buildd at lebrun.debian.org>)
+ id 1WEwaR-0006p0-4O; Sun, 16 Feb 2014 07:56:27 +0000
 Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Nov 2012 11:45:48 +0000
+MIME-Version: 1.0
+X-Mailer: MIME::Lite 3.028 (F2.82; B3.13; Q3.13)
+Date: Sun, 16 Feb 2014 07:56:26 +0000
 From: buildd on lebrun <buildd at lebrun.debian.org>
-To: logs at buildd.debian.org,buildd-admin at lebrun.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on sparc (dist=sid)
-Key-Id: E1D842D6
+To: buildd-admin at lebrun.debian.org,logs at buildd.debian.org
+Subject: Log for successful build of bedtools_2.19.0-1 on sparc (dist=sid)
+Key-Id: B16CDE7F
+Message-Id: <E1WEwaR-0006p0-4O at lebrun.debian.org>
 Delivered-To: logs at buildd.debian.org
 
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on lebrun.debian.org
+sbuild (Debian sbuild) 0.64.0 (18 May 2013) on lebrun.debian.org
 
 ╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (sparc)                                  04 Nov 2012 11:29 ║
+║ bedtools 2.19.0-1 (sparc)                                  16 Feb 2014 07:39 ║
 ╚══════════════════════════════════════════════════════════════════════════════╝
 
 Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: sparc
-Get:1 http://debian.carnet.hr unstable InRelease [219 kB]
-Get:2 http://incoming.debian.org unstable InRelease [219 kB]
-Get:3 http://debian.carnet.hr unstable/main Sources [6381 kB]
-Ign http://incoming.debian.org  InRelease
-Get:4 http://incoming.debian.org  Release.gpg [836 B]
-Get:5 http://incoming.debian.org unstable/main Sources [6381 kB]
-Get:6 http://debian.carnet.hr unstable/contrib Sources [53.1 kB]
-Get:7 http://debian.carnet.hr unstable/non-free Sources [101 kB]
-Get:8 http://debian.carnet.hr unstable/main sparc Packages [6043 kB]
-Get:9 http://debian.carnet.hr unstable/contrib sparc Packages [36.9 kB]
-Get:10 http://incoming.debian.org unstable/contrib Sources [53.1 kB]
-Get:11 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Get:12 http://incoming.debian.org unstable/main sparc Packages [6043 kB]
-Get:13 http://incoming.debian.org unstable/contrib sparc Packages [36.9 kB]
-Get:14 http://incoming.debian.org  Release [1141 B]
-Get:15 http://incoming.debian.org  Sources [16.2 kB]
-Get:16 http://incoming.debian.org  Packages [140 kB]
-Fetched 25.8 MB in 60s (429 kB/s)
+Version: 2.19.0-1
+Source Version: 2.19.0-1
+Distribution: sid
+Machine Architecture: sparc
+Host Architecture: sparc
+Build Architecture: sparc
+
+I: NOTICE: Log filtering will replace 'build/bedtools-zPcUzO/bedtools-2.19.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/bedtools-zPcUzO' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-sparc-sbuild-4ee1c3bb-7496-4d94-9853-cb9d9fd93499' with '«CHROOT»'
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Update chroot                                                                │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+Get:1 http://debian.carnet.hr unstable InRelease [199 kB]
+Get:2 http://incoming.debian.org unstable InRelease [199 kB]
+Get:3 http://debian.carnet.hr unstable/main Sources [7001 kB]
+Get:4 http://incoming.debian.org buildd-unstable InRelease [96.4 kB]
+Get:5 http://incoming.debian.org unstable/main Sources [7001 kB]
+Get:6 http://debian.carnet.hr unstable/contrib Sources [58.1 kB]
+Get:7 http://debian.carnet.hr unstable/non-free Sources [105 kB]
+Get:8 http://debian.carnet.hr unstable/main sparc Packages [6407 kB]
+Get:9 http://debian.carnet.hr unstable/contrib sparc Packages [42.3 kB]
+Get:10 http://incoming.debian.org unstable/contrib Sources [58.1 kB]
+Get:11 http://incoming.debian.org unstable/non-free Sources [105 kB]
+Get:12 http://incoming.debian.org unstable/main sparc Packages [6407 kB]
+Get:13 http://incoming.debian.org unstable/contrib sparc Packages [42.3 kB]
+Get:14 http://incoming.debian.org buildd-unstable/main Sources [69.2 kB]
+Get:15 http://incoming.debian.org buildd-unstable/contrib Sources [1336 B]
+Get:16 http://incoming.debian.org buildd-unstable/non-free Sources [32 B]
+Get:17 http://incoming.debian.org buildd-unstable/main sparc Packages [50.5 kB]
+Get:18 http://incoming.debian.org buildd-unstable/contrib sparc Packages [1076 B]
+Fetched 27.8 MB in 42s (655 kB/s)
 Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
@@ -76,258 +88,280 @@ Reading package lists...
 Building dependency tree...
 Reading state information...
 NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/  bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (621 kB/s)
+git://anonscm.debian.org/debian-med/bedtools.git
+Need to get 4127 kB of source archives.
+Get:1 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (dsc) [1949 B]
+Get:2 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (tar) [4118 kB]
+Get:3 http://incoming.debian.org/debian-buildd/ buildd-unstable/main bedtools 2.19.0-1 (diff) [6860 B]
+Fetched 4127 kB in 3s (1065 kB/s)
 Download complete and in download only mode
 
 Check arch
 ──────────
 
+Merged Build-Depends: build-essential, fakeroot
+Filtered Build-Depends: build-essential, fakeroot
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-uCnTHq/apt_archive/sbuild-build-depends-core-dummy.deb'.
+OK
+Reading package lists...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver)                          │
+│ Install core build dependencies (apt-based resolver)                         │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies: 
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
-Removing negative dependencies: 
+The following NEW packages will be installed:
+  sbuild-build-depends-core-dummy
+debconf: delaying package configuration, since apt-utils is not installed
+0 upgraded, 1 newly installed, 0 to remove and 32 not upgraded.
+Need to get 0 B/816 B of archives.
+After this operation, 0 B of additional disk space will be used.
+Selecting previously unselected package sbuild-build-depends-core-dummy.
+(Reading database ... 11317 files and directories currently installed.)
+Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
+Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
+Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-bedtools-dummy' in `/«BUILDDIR»/resolver-iDDprh/apt_archive/sbuild-build-depends-bedtools-dummy.deb'.
+OK
 Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
-Checking correctness of dependencies...
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver)                      │
+│ Install bedtools build dependencies (apt-based resolver)                     │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, libc6-dev-sparc64, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-12)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-35)
-libc6-dev-sparc64: already installed (2.13-35)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
+Installing build dependencies
 Reading package lists...
 Building dependency tree...
 Reading state information...
 The following extra packages will be installed:
-  bsdmainutils diffstat file gettext gettext-base groff-base html2text
-  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
-  libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
-  libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
-  python-minimal python2.7 python2.7-minimal
+  bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncurses5 libncursesw5 libpipeline1 libpython-stdlib
+  libpython2.7-minimal libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libtinfo5
+  libunistring0 libxml2 man-db mime-support po-debconf python python-minimal
+  python2.7 python2.7-minimal quilt zlib1g-dev
 Suggested packages:
   wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
   www-browser libmail-box-perl python-doc python-tk python2.7-doc
   binfmt-support procmail graphviz default-mta mail-transport-agent
 Recommended packages:
-  autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
-  libgpm2 xml-core libmail-sendmail-perl
+  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
+  libglib2.0-data shared-mime-info libgpm2 xml-core libmail-sendmail-perl
 The following NEW packages will be installed:
   bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
-  html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
-  libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
-  libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
-  po-debconf python python-minimal python2.7 python2.7-minimal quilt
-  zlib1g-dev
-0 upgraded, 33 newly installed, 0 to remove and 46 not upgraded.
-Need to get 16.1 MB of archives.
+  intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi6 libglib2.0-0
+  libmagic1 libncursesw5 libpipeline1 libpython-stdlib libpython2.7-minimal
+  libpython2.7-stdlib libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db
+  mime-support po-debconf python python-minimal python2.7 python2.7-minimal
+  quilt sbuild-build-depends-bedtools-dummy zlib1g-dev
+The following packages will be upgraded:
+  libncurses5 libtinfo5
+2 upgraded, 34 newly installed, 0 to remove and 30 not upgraded.
+Need to get 13.9 MB/13.9 MB of archives.
 After this operation, 46.3 MB of additional disk space will be used.
-Get:1 http://debian.carnet.hr/debian/ unstable/main libncursesw5 sparc 5.9-10 [119 kB]
-Get:2 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.2-1 [36.2 kB]
-Get:3 http://debian.carnet.hr/debian/ unstable/main libssl1.0.0 sparc 1.0.1c-4 [1077 kB]
-Get:4 http://debian.carnet.hr/debian/ unstable/main libasprintf0c2 sparc 0.18.1.1-9 [26.5 kB]
-Get:5 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 5.11-2 [197 kB]
-Get:6 http://debian.carnet.hr/debian/ unstable/main libpcre3 sparc 1:8.31-1 [252 kB]
-Get:7 http://debian.carnet.hr/debian/ unstable/main libsqlite3-0 sparc 3.7.14.1-1 [426 kB]
-Get:8 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.8.0+dfsg1-6 [826 kB]
-Get:9 http://debian.carnet.hr/debian/ unstable/main libffi5 sparc 3.0.10-3 [22.7 kB]
-Get:10 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.33.12+really2.32.4-3 [1645 kB]
-Get:11 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.6-1 [114 kB]
-Get:12 http://debian.carnet.hr/debian/ unstable/main libexpat1 sparc 2.1.0-1 [131 kB]
-Get:13 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
-Get:14 http://debian.carnet.hr/debian/ unstable/main libgettextpo0 sparc 0.18.1.1-9 [129 kB]
-Get:15 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 9.0.3 [206 kB]
-Get:16 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.21-9 [1133 kB]
-Get:17 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.3-1 [1033 kB]
-Get:18 http://debian.carnet.hr/debian/ unstable/main file sparc 5.11-2 [51.1 kB]
-Get:19 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.1.1-9 [148 kB]
-Get:20 http://debian.carnet.hr/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:21 http://debian.carnet.hr/debian/ unstable/main python2.7-minimal sparc 2.7.3-5 [1606 kB]
-Get:22 http://debian.carnet.hr/debian/ unstable/main python2.7 sparc 2.7.3-5 [2607 kB]
-Get:23 http://debian.carnet.hr/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:24 http://debian.carnet.hr/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:25 http://debian.carnet.hr/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:26 http://debian.carnet.hr/debian/ unstable/main html2text sparc 1.3.2a-15 [100 kB]
-Get:27 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.1.1-9 [1893 kB]
-Get:28 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:29 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:30 http://debian.carnet.hr/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:31 http://debian.carnet.hr/debian/ unstable/main diffstat sparc 1.55-3 [28.6 kB]
-Get:32 http://debian.carnet.hr/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:33 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.7.dfsg-13 [211 kB]
+Get:1 http://debian.carnet.hr/debian/ unstable/main libtinfo5 sparc 5.9+20140118-1 [265 kB]
+Get:2 http://debian.carnet.hr/debian/ unstable/main libncurses5 sparc 5.9+20140118-1 [72.8 kB]
+Get:3 http://debian.carnet.hr/debian/ unstable/main libncursesw5 sparc 5.9+20140118-1 [91.8 kB]
+Get:4 http://debian.carnet.hr/debian/ unstable/main libpipeline1 sparc 1.2.6-2 [20.8 kB]
+Get:5 http://debian.carnet.hr/debian/ unstable/main libssl1.0.0 sparc 1.0.1f-1 [797 kB]
+Get:6 http://debian.carnet.hr/debian/ unstable/main groff-base sparc 1.22.2-5 [1059 kB]
+Get:7 http://debian.carnet.hr/debian/ unstable/main bsdmainutils sparc 9.0.5 [204 kB]
+Get:8 http://debian.carnet.hr/debian/ unstable/main man-db sparc 2.6.6-1 [961 kB]
+Get:9 http://debian.carnet.hr/debian/ unstable/main libasprintf0c2 sparc 0.18.3.2-1 [29.0 kB]
+Get:10 http://debian.carnet.hr/debian/ unstable/main libmagic1 sparc 1:5.14-2 [212 kB]
+Get:11 http://debian.carnet.hr/debian/ unstable/main libsqlite3-0 sparc 3.8.3.1-1 [343 kB]
+Get:12 http://debian.carnet.hr/debian/ unstable/main libxml2 sparc 2.9.1+dfsg1-3 [841 kB]
+Get:13 http://debian.carnet.hr/debian/ unstable/main libffi6 sparc 3.0.13-12 [16.9 kB]
+Get:14 http://debian.carnet.hr/debian/ unstable/main libglib2.0-0 sparc 2.38.2-5 [2037 kB]
+Get:15 http://debian.carnet.hr/debian/ unstable/main libcroco3 sparc 0.6.8-2 [115 kB]
+Get:16 http://debian.carnet.hr/debian/ unstable/main libexpat1 sparc 2.1.0-4 [131 kB]
+Get:17 http://debian.carnet.hr/debian/ unstable/main libunistring0 sparc 0.9.3-5 [416 kB]
+Get:18 http://debian.carnet.hr/debian/ unstable/main libpython2.7-minimal sparc 2.7.6-5 [347 kB]
+Get:19 http://debian.carnet.hr/debian/ unstable/main python2.7-minimal sparc 2.7.6-5 [845 kB]
+Get:20 http://debian.carnet.hr/debian/ unstable/main file sparc 1:5.14-2 [53.4 kB]
+Get:21 http://debian.carnet.hr/debian/ unstable/main gettext-base sparc 0.18.3.2-1 [111 kB]
+Get:22 http://debian.carnet.hr/debian/ unstable/main mime-support all 3.54 [36.4 kB]
+Get:23 http://debian.carnet.hr/debian/ unstable/main libpython2.7-stdlib sparc 2.7.6-5 [1718 kB]
+Get:24 http://debian.carnet.hr/debian/ unstable/main python2.7 sparc 2.7.6-5 [234 kB]
+Get:25 http://debian.carnet.hr/debian/ unstable/main python-minimal sparc 2.7.5-5 [39.2 kB]
+Get:26 http://debian.carnet.hr/debian/ unstable/main libpython-stdlib sparc 2.7.5-5 [18.6 kB]
+Get:27 http://debian.carnet.hr/debian/ unstable/main python sparc 2.7.5-5 [147 kB]
+Get:28 http://debian.carnet.hr/debian/ unstable/main cdbs all 0.4.122 [81.4 kB]
+Get:29 http://debian.carnet.hr/debian/ unstable/main gettext sparc 0.18.3.2-1 [1134 kB]
+Get:30 http://debian.carnet.hr/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
+Get:31 http://debian.carnet.hr/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
+Get:32 http://debian.carnet.hr/debian/ unstable/main debhelper all 9.20131227 [687 kB]
+Get:33 http://debian.carnet.hr/debian/ unstable/main diffstat sparc 1.58-1 [27.1 kB]
+Get:34 http://debian.carnet.hr/debian/ unstable/main quilt all 0.61-1 [345 kB]
+Get:35 http://debian.carnet.hr/debian/ unstable/main zlib1g-dev sparc 1:1.2.8.dfsg-1 [213 kB]
 debconf: delaying package configuration, since apt-utils is not installed
-Fetched 16.1 MB in 13s (1212 kB/s)
+Fetched 13.9 MB in 14s (979 kB/s)
+(Reading database ... 11317 files and directories currently installed.)
+Preparing to unpack .../libtinfo5_5.9+20140118-1_sparc.deb ...
+Unpacking libtinfo5:sparc (5.9+20140118-1) over (5.9+20131221-1) ...
+Setting up libtinfo5:sparc (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
+(Reading database ... 11317 files and directories currently installed.)
+Preparing to unpack .../libncurses5_5.9+20140118-1_sparc.deb ...
+Unpacking libncurses5:sparc (5.9+20140118-1) over (5.9+20131221-1) ...
+Setting up libncurses5:sparc (5.9+20140118-1) ...
+Processing triggers for libc-bin (2.17-97) ...
 Selecting previously unselected package libncursesw5:sparc.
-(Reading database ... 11087 files and directories currently installed.)
-Unpacking libncursesw5:sparc (from .../libncursesw5_5.9-10_sparc.deb) ...
+(Reading database ... 11317 files and directories currently installed.)
+Preparing to unpack .../libncursesw5_5.9+20140118-1_sparc.deb ...
+Unpacking libncursesw5:sparc (5.9+20140118-1) ...
 Selecting previously unselected package libpipeline1:sparc.
-Unpacking libpipeline1:sparc (from .../libpipeline1_1.2.2-1_sparc.deb) ...
+Preparing to unpack .../libpipeline1_1.2.6-2_sparc.deb ...
+Unpacking libpipeline1:sparc (1.2.6-2) ...
 Selecting previously unselected package libssl1.0.0:sparc.
-Unpacking libssl1.0.0:sparc (from .../libssl1.0.0_1.0.1c-4_sparc.deb) ...
+Preparing to unpack .../libssl1.0.0_1.0.1f-1_sparc.deb ...
+Unpacking libssl1.0.0:sparc (1.0.1f-1) ...
+Selecting previously unselected package groff-base.
+Preparing to unpack .../groff-base_1.22.2-5_sparc.deb ...
+Unpacking groff-base (1.22.2-5) ...
+Selecting previously unselected package bsdmainutils.
+Preparing to unpack .../bsdmainutils_9.0.5_sparc.deb ...
+Unpacking bsdmainutils (9.0.5) ...
+Selecting previously unselected package man-db.
+Preparing to unpack .../man-db_2.6.6-1_sparc.deb ...
+Unpacking man-db (2.6.6-1) ...
 Selecting previously unselected package libasprintf0c2:sparc.
-Unpacking libasprintf0c2:sparc (from .../libasprintf0c2_0.18.1.1-9_sparc.deb) ...
+Preparing to unpack .../libasprintf0c2_0.18.3.2-1_sparc.deb ...
+Unpacking libasprintf0c2:sparc (0.18.3.2-1) ...
 Selecting previously unselected package libmagic1:sparc.
-Unpacking libmagic1:sparc (from .../libmagic1_5.11-2_sparc.deb) ...
-Selecting previously unselected package libpcre3:sparc.
-Unpacking libpcre3:sparc (from .../libpcre3_1%3a8.31-1_sparc.deb) ...
+Preparing to unpack .../libmagic1_1%3a5.14-2_sparc.deb ...
+Unpacking libmagic1:sparc (1:5.14-2) ...
 Selecting previously unselected package libsqlite3-0:sparc.
-Unpacking libsqlite3-0:sparc (from .../libsqlite3-0_3.7.14.1-1_sparc.deb) ...
+Preparing to unpack .../libsqlite3-0_3.8.3.1-1_sparc.deb ...
+Unpacking libsqlite3-0:sparc (3.8.3.1-1) ...
 Selecting previously unselected package libxml2:sparc.
-Unpacking libxml2:sparc (from .../libxml2_2.8.0+dfsg1-6_sparc.deb) ...
-Selecting previously unselected package libffi5:sparc.
-Unpacking libffi5:sparc (from .../libffi5_3.0.10-3_sparc.deb) ...
+Preparing to unpack .../libxml2_2.9.1+dfsg1-3_sparc.deb ...
+Unpacking libxml2:sparc (2.9.1+dfsg1-3) ...
+Selecting previously unselected package libffi6:sparc.
+Preparing to unpack .../libffi6_3.0.13-12_sparc.deb ...
+Unpacking libffi6:sparc (3.0.13-12) ...
 Selecting previously unselected package libglib2.0-0:sparc.
-Unpacking libglib2.0-0:sparc (from .../libglib2.0-0_2.33.12+really2.32.4-3_sparc.deb) ...
+Preparing to unpack .../libglib2.0-0_2.38.2-5_sparc.deb ...
+Unpacking libglib2.0-0:sparc (2.38.2-5) ...
 Selecting previously unselected package libcroco3:sparc.
-Unpacking libcroco3:sparc (from .../libcroco3_0.6.6-1_sparc.deb) ...
+Preparing to unpack .../libcroco3_0.6.8-2_sparc.deb ...
+Unpacking libcroco3:sparc (0.6.8-2) ...
 Selecting previously unselected package libexpat1:sparc.
-Unpacking libexpat1:sparc (from .../libexpat1_2.1.0-1_sparc.deb) ...
+Preparing to unpack .../libexpat1_2.1.0-4_sparc.deb ...
+Unpacking libexpat1:sparc (2.1.0-4) ...
 Selecting previously unselected package libunistring0:sparc.
-Unpacking libunistring0:sparc (from .../libunistring0_0.9.3-5_sparc.deb) ...
-Selecting previously unselected package libgettextpo0:sparc.
-Unpacking libgettextpo0:sparc (from .../libgettextpo0_0.18.1.1-9_sparc.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_sparc.deb) ...
-Selecting previously unselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-9_sparc.deb) ...
-Selecting previously unselected package man-db.
-Unpacking man-db (from .../man-db_2.6.3-1_sparc.deb) ...
+Preparing to unpack .../libunistring0_0.9.3-5_sparc.deb ...
+Unpacking libunistring0:sparc (0.9.3-5) ...
+Selecting previously unselected package libpython2.7-minimal:sparc.
+Preparing to unpack .../libpython2.7-minimal_2.7.6-5_sparc.deb ...
+Unpacking libpython2.7-minimal:sparc (2.7.6-5) ...
+Selecting previously unselected package python2.7-minimal.
+Preparing to unpack .../python2.7-minimal_2.7.6-5_sparc.deb ...
+Unpacking python2.7-minimal (2.7.6-5) ...
 Selecting previously unselected package file.
-Unpacking file (from .../archives/file_5.11-2_sparc.deb) ...
+Preparing to unpack .../file_1%3a5.14-2_sparc.deb ...
+Unpacking file (1:5.14-2) ...
 Selecting previously unselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_sparc.deb) ...
+Preparing to unpack .../gettext-base_0.18.3.2-1_sparc.deb ...
+Unpacking gettext-base (0.18.3.2-1) ...
 Selecting previously unselected package mime-support.
-Unpacking mime-support (from .../mime-support_3.52-2_all.deb) ...
-Selecting previously unselected package python2.7-minimal.
-Unpacking python2.7-minimal (from .../python2.7-minimal_2.7.3-5_sparc.deb) ...
+Preparing to unpack .../mime-support_3.54_all.deb ...
+Unpacking mime-support (3.54) ...
+Selecting previously unselected package libpython2.7-stdlib:sparc.
+Preparing to unpack .../libpython2.7-stdlib_2.7.6-5_sparc.deb ...
+Unpacking libpython2.7-stdlib:sparc (2.7.6-5) ...
 Selecting previously unselected package python2.7.
-Unpacking python2.7 (from .../python2.7_2.7.3-5_sparc.deb) ...
+Preparing to unpack .../python2.7_2.7.6-5_sparc.deb ...
+Unpacking python2.7 (2.7.6-5) ...
 Selecting previously unselected package python-minimal.
-Unpacking python-minimal (from .../python-minimal_2.7.3-3_all.deb) ...
+Preparing to unpack .../python-minimal_2.7.5-5_sparc.deb ...
+Unpacking python-minimal (2.7.5-5) ...
+Selecting previously unselected package libpython-stdlib:sparc.
+Preparing to unpack .../libpython-stdlib_2.7.5-5_sparc.deb ...
+Unpacking libpython-stdlib:sparc (2.7.5-5) ...
 Selecting previously unselected package python.
-Unpacking python (from .../python_2.7.3-3_all.deb) ...
+Preparing to unpack .../python_2.7.5-5_sparc.deb ...
+Unpacking python (2.7.5-5) ...
 Selecting previously unselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package html2text.
-Unpacking html2text (from .../html2text_1.3.2a-15_sparc.deb) ...
+Preparing to unpack .../archives/cdbs_0.4.122_all.deb ...
+Unpacking cdbs (0.4.122) ...
 Selecting previously unselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-9_sparc.deb) ...
+Preparing to unpack .../gettext_0.18.3.2-1_sparc.deb ...
+Unpacking gettext (0.18.3.2-1) ...
 Selecting previously unselected package intltool-debian.
-Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
+Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
+Unpacking intltool-debian (0.35.0+20060710.1) ...
 Selecting previously unselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Preparing to unpack .../po-debconf_1.0.16+nmu2_all.deb ...
+Unpacking po-debconf (1.0.16+nmu2) ...
 Selecting previously unselected package debhelper.
-Unpacking debhelper (from .../debhelper_9.20120909_all.deb) ...
+Preparing to unpack .../debhelper_9.20131227_all.deb ...
+Unpacking debhelper (9.20131227) ...
 Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_sparc.deb) ...
+Preparing to unpack .../diffstat_1.58-1_sparc.deb ...
+Unpacking diffstat (1.58-1) ...
 Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
+Preparing to unpack .../archives/quilt_0.61-1_all.deb ...
+Unpacking quilt (0.61-1) ...
 Selecting previously unselected package zlib1g-dev:sparc.
-Unpacking zlib1g-dev:sparc (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_sparc.deb) ...
-Setting up libncursesw5:sparc (5.9-10) ...
-Setting up libpipeline1:sparc (1.2.2-1) ...
-Setting up libssl1.0.0:sparc (1.0.1c-4) ...
-Setting up libasprintf0c2:sparc (0.18.1.1-9) ...
-Setting up libmagic1:sparc (5.11-2) ...
-Setting up libpcre3:sparc (1:8.31-1) ...
-Setting up libsqlite3-0:sparc (3.7.14.1-1) ...
-Setting up libxml2:sparc (2.8.0+dfsg1-6) ...
-Setting up libffi5:sparc (3.0.10-3) ...
-Setting up libglib2.0-0:sparc (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:sparc (0.6.6-1) ...
-Setting up libexpat1:sparc (2.1.0-1) ...
-Setting up libunistring0:sparc (0.9.3-5) ...
-Setting up libgettextpo0:sparc (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
+Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1_sparc.deb ...
+Unpacking zlib1g-dev:sparc (1:1.2.8.dfsg-1) ...
+Selecting previously unselected package sbuild-build-depends-bedtools-dummy.
+Preparing to unpack .../sbuild-build-depends-bedtools-dummy.deb ...
+Unpacking sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Setting up libncursesw5:sparc (5.9+20140118-1) ...
+Setting up libpipeline1:sparc (1.2.6-2) ...
+Setting up libssl1.0.0:sparc (1.0.1f-1) ...
+Setting up groff-base (1.22.2-5) ...
+Setting up bsdmainutils (9.0.5) ...
 update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
 update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
+Setting up man-db (2.6.6-1) ...
+Not building database; man-db/auto-update is not 'true'.
+Setting up libasprintf0c2:sparc (0.18.3.2-1) ...
+Setting up libmagic1:sparc (1:5.14-2) ...
+Setting up libsqlite3-0:sparc (3.8.3.1-1) ...
+Setting up libxml2:sparc (2.9.1+dfsg1-3) ...
+Setting up libffi6:sparc (3.0.13-12) ...
+Setting up libglib2.0-0:sparc (2.38.2-5) ...
+No schema files found: doing nothing.
+Setting up libcroco3:sparc (0.6.8-2) ...
+Setting up libexpat1:sparc (2.1.0-4) ...
+Setting up libunistring0:sparc (0.9.3-5) ...
+Setting up libpython2.7-minimal:sparc (2.7.6-5) ...
+Setting up python2.7-minimal (2.7.6-5) ...
+Setting up file (1:5.14-2) ...
+Setting up gettext-base (0.18.3.2-1) ...
+Setting up mime-support (3.54) ...
 update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
+Setting up libpython2.7-stdlib:sparc (2.7.6-5) ...
+Setting up python2.7 (2.7.6-5) ...
+Setting up python-minimal (2.7.5-5) ...
+Setting up libpython-stdlib:sparc (2.7.5-5) ...
+Setting up python (2.7.5-5) ...
+Setting up cdbs (0.4.122) ...
+Setting up gettext (0.18.3.2-1) ...
 Setting up intltool-debian (0.35.0+20060710.1) ...
 Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:sparc (1:1.2.7.dfsg-13) ...
-Removing negative dependencies: 
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 46 not upgraded.
-Checking correctness of dependencies...
+Setting up debhelper (9.20131227) ...
+Setting up diffstat (1.58-1) ...
+Setting up quilt (0.61-1) ...
+Setting up zlib1g-dev:sparc (1:1.2.8.dfsg-1) ...
+Setting up sbuild-build-depends-bedtools-dummy (0.invalid.0) ...
+Processing triggers for libc-bin (2.17-97) ...
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Build environment                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
 Kernel: Linux 2.6.32-5-sparc64-smp sparc (sparc64)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.8 g++-4.6_4.6.3-9 gcc-4.6_4.6.3-9 libc6-dev_2.13-35 libstdc++6_4.7.1-7 libstdc++6-4.6-dev_4.6.3-9 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-9 dash_0.5.7-3 debconf_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.8 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2- [...]
+Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.6 g++-4.6_4.6.4-5 gcc-4.6_4.6.4-5 libc6-dev_2.17-97 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5 linux-libc-dev_3.12.6-2
+Package versions: apt_0.9.14.2 base-files_7.2 base-passwd_3.5.32 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpp_4:4.6.4-5 cpp-4.6_4.6.4-5 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debian-archive-keyring_2012.4 debianutils_4.4 diffstat_1.58-1 diffutils_1:3.3-1 dpkg_1.17.6 dpkg-dev_1.17.6 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 eatmydata_26-2 fakeroot_1.20-3 file_1:5.14-2 fi [...]
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Build                                                                        │
@@ -337,35 +371,56 @@ Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binu
 Unpack source
 ─────────────
 
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov  4 09:07:58 2012 UTC using RSA key ID 2295D502
+gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
+gpgv: Signature made Sun Feb 16 07:17:50 2014 UTC using RSA key ID 2295D502
 gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
+dpkg-source: warning: failed to verify signature on ./bedtools_2.19.0-1.dsc
+dpkg-source: info: extracting bedtools in bedtools-2.19.0
+dpkg-source: info: unpacking bedtools_2.19.0.orig.tar.gz
+dpkg-source: info: unpacking bedtools_2.19.0-1.debian.tar.xz
 dpkg-source: info: applying gzstream.h.patch
+dpkg-source: info: applying debian-changes
 
 Check disc space
 ────────────────
 
+Sufficient free space for build
+
+User Environment
+────────────────
+
+DEB_BUILD_OPTIONS=parallel=2
+HOME=/sbuild-nonexistent
+LOGNAME=buildd
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_ALIAS_NAME=sid-sparc-sbuild
+SCHROOT_CHROOT_NAME=sid-sparc-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1009
+SCHROOT_GROUP=buildd
+SCHROOT_SESSION_ID=sid-sparc-sbuild-4ee1c3bb-7496-4d94-9853-cb9d9fd93499
+SCHROOT_UID=2952
+SCHROOT_USER=buildd
+SHELL=/bin/sh
+USER=buildd
 
 dpkg-buildpackage
 ─────────────────
 
 dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
+dpkg-buildpackage: source version 2.19.0-1
+dpkg-buildpackage: source distribution unstable
+ dpkg-source --before-build bedtools-2.19.0
 dpkg-buildpackage: host architecture sparc
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
  fakeroot debian/rules clean
 test -x debian/rules
-dh_testroot
 rm -f debian/stamp-makefile-build debian/stamp-makefile-install
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
  * Cleaning-up BamTools API
  * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 dh_clean 
 	rm -f debian/bedtools.substvars
 	rm -f debian/bedtools.*.debhelper
@@ -377,16 +432,21 @@ dh_clean
 		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
 		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
 		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
-		\) -exec rm -f {} \; \) -o \
-		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
+		\) -exec rm -f {} + \) -o \
+		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 	rm -f *-stamp
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 if [ -d "." ]; then \
-	  cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
+	  cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
 	fi
+Removing patch debian-changes
+Restoring README.md
+Restoring docs/content/related-tools.rst
+Restoring docs/content/installation.rst
+
 Removing patch gzstream.h.patch
 Restoring src/utils/gzstream/gzstream.C
 
@@ -399,41 +459,85 @@ mkdir -p "."
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_BUILDDEB_ARGS is a deprecated variable
 /usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_COMPRESS_EXCLUDE is a deprecated variable
 /usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+cd . && QUILT_PATCHES=/«PKGBUILDDIR»/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
 Applying patch gzstream.h.patch
 patching file src/utils/gzstream/gzstream.C
 
-Now at patch gzstream.h.patch
+Applying patch debian-changes
+patching file README.md
+patching file docs/content/installation.rst
+patching file docs/content/related-tools.rst
+
+Now at patch debian-changes
 touch debian/stamp-patched
 /usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 /usr/bin/make  -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"  
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Entering directory `/«PKGBUILDDIR»'
 Building BEDTools:
 =========================================================
-DETECTED_VERSION = v2.17.0
+DETECTED_VERSION = v2.19.0
 CURRENT_VERSION  = 
 Updating version file.
  * Creating BamTools API
 - Building in src/utils/bedFile
   * compiling bedFile.cpp
+- Building in src/utils/BinTree
+  * compiling BinTree.cpp
 - Building in src/utils/version
   * compiling version.cpp
 - Building in src/utils/bedGraphFile
   * compiling bedGraphFile.cpp
 - Building in src/utils/chromsweep
   * compiling chromsweep.cpp
+- Building in src/utils/Contexts
+  * compiling ContextBase.cpp
+  * compiling ContextIntersect.cpp
+  * compiling ContextMap.cpp
+  * compiling ContextSample.cpp
+- Building in src/utils/FileRecordTools
+- Building in FileReaders
+  * compiling FileReader.cpp
+  * compiling SingleLineDelimTransferBuffer.cpp
+  * compiling SingleLineDelimTextFileReader.cpp
+  * compiling BamFileReader.cpp
+  * compiling BufferedStreamMgr.cpp
+  * compiling InputStreamMgr.cpp
+- Building in Records
+  * compiling RecordMgr.cpp
+  * compiling Record.cpp
+  * compiling Bed3Interval.cpp
+  * compiling Bed4Interval.cpp
+  * compiling BedGraphInterval.cpp
+  * compiling Bed5Interval.cpp
+  * compiling Bed6Interval.cpp
+  * compiling BedPlusInterval.cpp
+  * compiling Bed12Interval.cpp
+  * compiling BamRecord.cpp
+  * compiling VcfRecord.cpp
+  * compiling GffRecord.cpp
+  * compiling RecordKeyList.cpp
+  * compiling BlockMgr.cpp
+  * compiling FileRecordMgr.cpp
+- Building in src/utils/general
+  * compiling QuickString.cpp
+  * compiling ParseTools.cpp
+  * compiling PushBackStreamBuf.cpp
+  * compiling CompressionTools.cpp
 - Building in src/utils/gzstream
 g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
 - Building in src/utils/fileType
   * compiling fileType.cpp
+  * compiling FileRecordTypeChecker.cpp
 - Building in src/utils/bedFilePE
   * compiling bedFilePE.cpp
+- Building in src/utils/NewChromsweep
+  * compiling NewChromsweep.cpp
 - Building in src/utils/sequenceUtilities
   * compiling sequenceUtils.cpp
 - Building in src/utils/tabFile
@@ -485,26 +589,22 @@ ranlib lib/libbamtools.a
   * compiling BamAncillary.cpp
 - Building in src/utils/BlockedIntervals
   * compiling BlockedIntervals.cpp
-  * compiling BlockedIntervals.cpp
 - Building in src/utils/Fasta
   * compiling Fasta.cpp
 Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
+Fasta.cpp:29:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
 Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-  * compiling split.cpp
+Fasta.cpp:33:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
   * compiling split.cpp
 - Building in src/utils/VectorOps
   * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
-  * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+- Building in src/utils/GenomeFile
+  * compiling GenomeFile.cpp
+GenomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
+GenomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
+  * compiling NewGenomeFile.cpp
+- Building in src/utils/RecordOutputMgr
+  * compiling RecordOutputMgr.cpp
 - Building in src/annotateBed
   * compiling annotateMain.cpp
 annotateMain.cpp: In function 'int annotate_main(int, char**)':
@@ -513,7 +613,7 @@ annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunuse
 - Building in src/bamToBed
   * compiling bamToBed.cpp
 bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
+bamToBed.cpp:88:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
 - Building in src/bamToFastq
   * compiling bamToFastqMain.cpp
 bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
@@ -564,9 +664,9 @@ getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused
   * compiling groupBy.cpp
 groupBy.cpp: In function 'int groupby_main(int, char**)':
 groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
+- Building in src/intersectFile
   * compiling intersectMain.cpp
-  * compiling intersectBed.cpp
+  * compiling intersectFile.cpp
 - Building in src/jaccard
   * compiling jaccardMain.cpp
   * compiling jaccard.cpp
@@ -576,12 +676,9 @@ groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-se
 - Building in src/maskFastaFromBed
   * compiling maskFastaFromBedMain.cpp
   * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
+- Building in src/mapFile
   * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
-  * compiling mapBed.cpp
+  * compiling mapFile.cpp
 - Building in src/mergeBed
   * compiling mergeMain.cpp
 mergeMain.cpp: In function 'int merge_main(int, char**)':
@@ -601,6 +698,8 @@ multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used
 multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
 multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
   * compiling multiIntersectBed.cpp
+- Building in src/nekSandbox1
+  * compiling nekSandboxMain.cpp
 - Building in src/nucBed
   * compiling nucBedMain.cpp
   * compiling nucBed.cpp
@@ -624,6 +723,18 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
 - Building in src/randomBed
   * compiling randomBedMain.cpp
   * compiling randomBed.cpp
+- Building in src/regressTest
+compiling RegressTest.cpp
+compiling regressTestMain.cpp
+- Building in src/reldist
+  * compiling reldistMain.cpp
+  * compiling reldist.cpp
+reldist.cpp: In member function 'void RelativeDistance::ReportDistanceSummary()':
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat]
+reldist.cpp:73:62: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t {aka unsigned int}' [-Wformat]
+- Building in src/sampleFile
+  * compiling sampleMain.cpp
+  * compiling SampleFile.cpp
 - Building in src/shuffleBed
   * compiling shuffleBedMain.cpp
   * compiling shuffleBed.cpp
@@ -635,8 +746,6 @@ pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but
   * compiling sortBed.cpp
 - Building in src/subtractBed
   * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
   * compiling subtractBed.cpp
 - Building in src/tagBam
   * compiling tagBamMain.cpp
@@ -660,7 +769,7 @@ unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-
 done.
 - Creating executables for old CLI.
 done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
 touch debian/stamp-makefile-build
 DEB_MAKE_CHECK_TARGET unset, not running checks
  fakeroot debian/rules binary-arch
@@ -681,7 +790,7 @@ Adding cdbs dependencies to debian/bedtools.substvars
 dh_installdirs -pbedtools 
 dh_installdocs -pbedtools 
 	install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
-	cp -a README.rst debian/bedtools/usr/share/doc/bedtools
+	cp -a README.md debian/bedtools/usr/share/doc/bedtools
 	chown -R 0:0 debian/bedtools/usr/share/doc
 	chmod -R go=rX debian/bedtools/usr/share/doc
 	chmod -R u\+rw debian/bedtools/usr/share/doc
@@ -765,6 +874,8 @@ dh_install -pbedtools
 	cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/reldist debian/bedtools/usr/share/bedtools/test/
+	cp -a ./test/sample debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
 	cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
@@ -779,7 +890,7 @@ dh_compress -pbedtools -X test
 	cd debian/bedtools
 	chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
 	gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
-	cd '/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0'
+	cd '/«PKGBUILDDIR»'
 dh_fixperms -pbedtools  
 	find debian/bedtools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
 	find debian/bedtools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
@@ -795,7 +906,7 @@ dh_fixperms -pbedtools
 	find debian/bedtools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
 dh_makeshlibs -pbedtools  
 	rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
+rm /«PKGBUILDDIR»/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
 dh_installdeb -pbedtools 
 	find debian/bedtools/etc -type f -printf '/etc/%P
 ' >> debian/bedtools/DEBIAN/conffiles
@@ -815,64 +926,84 @@ dh_md5sums -pbedtools
 	chown 0:0 debian/bedtools/DEBIAN/md5sums
 dh_builddeb -pbedtools -- -Z xz
 	dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_sparc.deb'.
- dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../bedtools_2.17.0-1_sparc.changes
+dpkg-deb: building package `bedtools' in `../bedtools_2.19.0-1_sparc.deb'.
+ dpkg-genchanges -B -msparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org> >../bedtools_2.19.0-1_sparc.changes
 dpkg-genchanges: arch-specific upload - not including arch-independent packages
 dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
+ dpkg-source --after-build bedtools-2.19.0
+dpkg-source: info: using options from bedtools-2.19.0/debian/source/options: --single-debian-patch
+dpkg-buildpackage: binary-only upload (no source included)
 ────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1145
+Build finished at 20140216-0756
+
+Finished
+────────
+
+I: Built successfully
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Post Build Chroot                                                            │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+┌──────────────────────────────────────────────────────────────────────────────┐
+│ Changes                                                                      │
+└──────────────────────────────────────────────────────────────────────────────┘
+
+
+bedtools_2.19.0-1_sparc.changes:
+────────────────────────────────
 
-bedtools_2.17.0-1_sparc.changes:
 Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
+Date: Sat, 15 Feb 2014 19:39:23 +0900
 Source: bedtools
 Binary: bedtools
 Architecture: sparc
-Version: 2.17.0-1
+Version: 2.19.0-1
 Distribution: sid
 Urgency: low
 Maintainer: sparc Build Daemon (lebrun) <buildd_sparc-lebrun at buildd.debian.org>
 Changed-By: Charles Plessy <plessy at debian.org>
 Description: 
  bedtools   - suite of utilities for comparing genomic features
+Closes: 714873
 Changes: 
- bedtools (2.17.0-1) unstable; urgency=low
+ bedtools (2.19.0-1) unstable; urgency=low
  .
-   bb9012e Imported Upstream version 2.16.2.
-   9006b23 Imported Upstream version 2.17.0.
-   9112569 Documented BEDTools license as a whole.
-   325689c Removed Pre-Depends: dpkg (>= 1.15.6).
-   a781b14 Conforms with Policy 3.9.4.
-   84b1167 Use Debhelper 9.
-   0bf572d Distribute the test suite.
-   422cd34 Bash completion for BEDTools.
+   e07e70c Imported Upstream version 2.19.0
+   afdc61a Watch GitHub at https://github.com/arq5x/bedtools2.
+   4abe14e Source control file normalised with config-model-edit.
+   0518353 Corrected a typo in the long description. (Closes: #714873)
+   f63d85e Follow the layout of the upstream repository.
+   c25f9e5 Correct name of README file in debian/docs.
+   5561c7c Emulate source format 1.0 in the format 3.0 (quilt).
+   a45a0ab Canonical VCS URLs.
+   4459dfe Conforms with Policy 3.9.5.
 Checksums-Sha1: 
- 0ebb1cd31d27bb537fb322fa210d3743118cca2c 388546 bedtools_2.17.0-1_sparc.deb
+ 2e0c15283e806cd21e2698b7ef719e395a8960be 471084 bedtools_2.19.0-1_sparc.deb
 Checksums-Sha256: 
- 841a99a125f1763646aed4f21cc66f6f98a3f8726abd1ef218801d8c9c5dff5c 388546 bedtools_2.17.0-1_sparc.deb
+ 88e048f62e7ba2cc3922edf1cf79d823390242544b635302f9842775a4e0f72a 471084 bedtools_2.19.0-1_sparc.deb
 Files: 
- 54f29f6973c28597c047f1336ff7e795 388546 science optional bedtools_2.17.0-1_sparc.deb
+ 4eee9abcc9e405b10e12e2f913ef5575 471084 science optional bedtools_2.19.0-1_sparc.deb
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Package contents                                                             │
 └──────────────────────────────────────────────────────────────────────────────┘
 
 
-bedtools_2.17.0-1_sparc.deb
+bedtools_2.19.0-1_sparc.deb
 ───────────────────────────
 
  new debian package, version 2.0.
- size 388546 bytes: control archive= 4109 bytes.
+ size 471084 bytes: control archive=6288 bytes.
       32 bytes,     1 lines      conffiles            
-     833 bytes,    18 lines      control              
-    9605 bytes,   132 lines      md5sums              
+     834 bytes,    18 lines      control              
+   14686 bytes,   194 lines      md5sums              
  Package: bedtools
- Version: 2.17.0-1
+ Version: 2.19.0-1
  Architecture: sparc
  Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1606
+ Installed-Size: 2322
  Depends: libc6 (>= 2.6), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
  Suggests: filo
  Section: science
@@ -885,203 +1016,270 @@ bedtools_2.17.0-1_sparc.deb
   BEDTools, one can develop sophisticated pipelines that answer complicated
   research questions by streaming several BEDTools together.
   .
-  The groupBy utility is distribued in the filo package.
+  The groupBy utility is distributed in the filo package.
 
-drwxr-xr-x root/root         0 2012-11-04 11:45 ./
-drwxr-xr-x root/root         0 2012-11-04 11:45 ./usr/
-drwxr-xr-x root/root         0 2012-11-04 11:45 ./usr/bin/
--rwxr-xr-x root/root        41 2012-11-04 11:45 ./usr/bin/multiBamCov
--rwxr-xr-x root/root        44 2012-11-04 11:45 ./usr/bin/windowMaker
--rwxr-xr-x root/root        42 2012-11-04 11:45 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root        43 2012-11-04 11:45 ./usr/bin/complementBed
--rwxr-xr-x root/root   1438428 2012-11-04 11:45 ./usr/bin/bedtools
--rwxr-xr-x root/root        40 2012-11-04 11:45 ./usr/bin/clusterBed
--rwxr-xr-x root/root        43 2012-11-04 11:45 ./usr/bin/pairToPair
--rwxr-xr-x root/root        36 2012-11-04 11:45 ./usr/bin/tagBam
--rwxr-xr-x root/root        36 2012-11-04 11:45 ./usr/bin/mapBed
--rwxr-xr-x root/root        39 2012-11-04 11:45 ./usr/bin/randomBed
--rwxr-xr-x root/root        36 2012-11-04 11:45 ./usr/bin/nucBed
--rwxr-xr-x root/root        39 2012-11-04 11:45 ./usr/bin/windowBed
--rwxr-xr-x root/root        41 2012-11-04 11:45 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root        42 2012-11-04 11:45 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root        43 2012-11-04 11:45 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root        42 2012-11-04 11:45 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root        42 2012-11-04 11:45 ./usr/bin/intersectBed
--rwxr-xr-x root/root        37 2012-11-04 11:45 ./usr/bin/slopBed
--rwxr-xr-x root/root        41 2012-11-04 11:45 ./usr/bin/subtractBed
--rwxr-xr-x root/root        43 2012-11-04 11:45 ./usr/bin/bamToFastq
--rwxr-xr-x root/root        40 2012-11-04 11:45 ./usr/bin/closestBed
--rwxr-xr-x root/root        38 2012-11-04 11:45 ./usr/bin/mergeBed
--rwxr-xr-x root/root        36 2012-11-04 11:45 ./usr/bin/bedToIgv
--rwxr-xr-x root/root        42 2012-11-04 11:45 ./usr/bin/pairToBed
--rwxr-xr-x root/root        44 2012-11-04 11:45 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root        40 2012-11-04 11:45 ./usr/bin/shuffleBed
--rwxr-xr-x root/root        40 2012-11-04 11:45 ./usr/bin/getOverlap
--rwxr-xr-x root/root        38 2012-11-04 11:45 ./usr/bin/linksBed
--rwxr-xr-x root/root        43 2012-11-04 11:45 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root        41 2012-11-04 11:45 ./usr/bin/coverageBed
--rwxr-xr-x root/root        37 2012-11-04 11:45 ./usr/bin/sortBed
--rwxr-xr-x root/root        41 2012-11-04 11:45 ./usr/bin/bamToBed
--rwxr-xr-x root/root        41 2012-11-04 11:45 ./usr/bin/annotateBed
--rwxr-xr-x root/root        39 2012-11-04 11:45 ./usr/bin/expandCols
--rwxr-xr-x root/root        38 2012-11-04 11:45 ./usr/bin/flankBed
--rwxr-xr-x root/root        41 2012-11-04 11:45 ./usr/bin/bedToBam
-drwxr-xr-x root/root         0 2012-11-04 11:45 ./usr/share/
-drwxr-xr-x root/root         0 2012-11-04 11:45 ./usr/share/bedtools/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root       585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
--rwxr-xr-x root/root      1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root       856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root       565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
-drwxr-xr-x root/root         0 2012-11-04 11:45 ./usr/share/bedtools/test/
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root       264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root      1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root       186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root       227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
--rw-r--r-- root/root      2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root       885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
--rw-r--r-- root/root       250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root        57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root        46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root      3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
--rw-r--r-- root/root       147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root        35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root      2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
--rw-r--r-- root/root      1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root       255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root        76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root     10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root      3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root      3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root      1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root      1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root        72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root      3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root        60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root       156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root       171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root       142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root        96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root        63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root       988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root       162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root       176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root       167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
--rw-r--r-- root/root      3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root        61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root        16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root       117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root      1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
--rw-r--r-- root/root         0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root        41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root        10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
--rw-r--r-- root/root      3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root      2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root        36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root        11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root        77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root        38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root       825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
--rw-r--r-- root/root        18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
-drwxr-xr-x root/root         0 2012-11-04 11:32 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root        52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
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+-rw-r--r-- root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/general/empty.bed
+-rw-r--r-- root/root      2847 2014-02-09 02:29 ./usr/share/bedtools/test/general/test-general.sh
+-rw-r--r-- root/root        53 2014-02-09 02:29 ./usr/share/bedtools/test/general/non-empty.bed.gz
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/flank/
+-rw-r--r-- root/root        10 2014-02-09 02:29 ./usr/share/bedtools/test/flank/tiny.genome
+-rw-r--r-- root/root      3865 2014-02-09 02:29 ./usr/share/bedtools/test/flank/test-flank.sh
+-rw-r--r-- root/root        41 2014-02-09 02:29 ./usr/share/bedtools/test/flank/a.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/merge/
+-rw-r--r-- root/root      4062 2014-02-09 02:29 ./usr/share/bedtools/test/merge/test-merge.sh
+-rw-r--r-- root/root        57 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.names.bed
+-rw-r--r-- root/root        46 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.bed
+-rw-r--r-- root/root       147 2014-02-09 02:29 ./usr/share/bedtools/test/merge/a.full.bed
+drwxr-xr-x root/root         0 2014-02-09 02:29 ./usr/share/bedtools/test/map/
+-rw-r--r-- root/root        58 2014-02-09 02:29 ./usr/share/bedtools/test/map/a.vsorted.bed
+-rw-r--r-- root/root       483 2014-02-09 02:29 ./usr/share/bedtools/test/map/test.gff
+-rw-r--r-- root/root     17540 2014-02-09 02:29 ./usr/share/bedtools/test/map/test-map.sh
+-rw-r--r-- root/root        64 2014-02-09 02:29 ./usr/share/bedtools/test/map/three_blocks_nomatch.bed
+-rw-r--r-- root/root      1815 2014-02-09 02:29 ./usr/share/bedtools/test/map/test.vcf
+-rw-r--r-- root/root       227 2014-02-09 02:29 ./usr/share/bedtools/test/map/values3.bed
+-rw-r--r-- root/root       256 2014-02-09 02:29 ./usr/share/bedtools/test/map/values4.bed
+-rw-r--r-- root/root        30 2014-02-09 02:29 ./usr/share/bedtools/test/map/genome
+-rw-r--r-- root/root        80 2014-02-09 02:29 ./usr/share/bedtools/test/map/ivls.bed
+-rw-r--r-- root/root      1825 2014-02-09 02:29 ./usr/share/bedtools/test/map/values.bam
+-rw-r--r-- root/root       186 2014-02-09 02:29 ./usr/share/bedtools/test/map/values2.bed
+-rw-r--r-- root/root       148 2014-02-09 02:29 ./usr/share/bedtools/test/map/values.bed
+-rw-r--r-- root/root        61 2014-02-09 02:29 ./usr/share/bedtools/test/map/three_blocks_match.bed
+-rw-r--r-- root/root        11 2014-02-09 02:29 ./usr/share/bedtools/test/map/t.bed
+-rw-r--r-- root/root        55 2014-02-09 02:29 ./usr/share/bedtools/test/map/ivls2.bed
+-rw-r--r-- root/root       147 2014-02-09 02:29 ./usr/share/bedtools/test/map/values5.bed
+-rw-r--r-- root/root        33 2014-02-09 02:29 ./usr/share/bedtools/test/map/b.vsorted.bed
 
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished                                                                     │
+│ Post Build                                                                   │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build                                                                   │
+│ Cleanup                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Purging /var/lib/schroot/mount/sid-sparc-sbuild-936afc54-d88b-49fe-83e1-167f20c992d8/build/buildd-bedtools_2.17.0-1-sparc-Xb2QVZ
+Purging /«BUILDDIR»
 Not cleaning session: cloned chroot in use
 
 ┌──────────────────────────────────────────────────────────────────────────────┐
 │ Summary                                                                      │
 └──────────────────────────────────────────────────────────────────────────────┘
 
-Architecture: sparc
-Build-Space: 84092
-Build-Time: 764
+Build Architecture: sparc
+Build-Space: 101476
+Build-Time: 877
 Distribution: sid
-Install-Time: 105
-Job: bedtools_2.17.0-1
+Host Architecture: sparc
+Install-Time: 77
+Job: bedtools_2.19.0-1
+Machine Architecture: sparc
 Package: bedtools
-Package-Time: 952
-Source-Version: 2.17.0-1
-Space: 84092
+Package-Time: 1032
+Source-Version: 2.19.0-1
+Space: 101476
 Status: successful
-Version: 2.17.0-1
+Version: 2.19.0-1
 ────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1145
-Build needed 00:15:52, 84092k disc space
-Signature with key 'E1D842D6' requested:
+Finished at 20140216-0756
+Build needed 00:17:12, 101476k disc space
+Signature with key 'B16CDE7F' requested:
+ signfile /home/buildd/build/bedtools_2.19.0-1_sparc.changes B16CDE7F
+
+Successfully signed changes file

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bedtools.git

