[med-svn] [bedtools] 02/03: Not release architectures anymore.
Charles Plessy
plessy at moszumanska.debian.org
Fri Mar 21 07:23:32 UTC 2014
This is an automated email from the git hooks/post-receive script.
plessy pushed a commit to branch meta
in repository bedtools.
commit 56effa39858b5e19f8d87678e4cf34f072585b3c
Author: Charles Plessy <plessy at debian.org>
Date: Fri Mar 21 16:18:53 2014 +0900
Not release architectures anymore.
---
ia64.log | 969 ----------------------------
s390.log | 2150 --------------------------------------------------------------
2 files changed, 3119 deletions(-)
diff --git a/ia64.log b/ia64.log
deleted file mode 100644
index ee19247..0000000
--- a/ia64.log
+++ /dev/null
@@ -1,969 +0,0 @@
-From buildd at caballero.debian.org Sun Nov 04 11:39:35 2012
-Return-path: <buildd at caballero.debian.org>
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-Date: Sun, 04 Nov 2012 11:39:32 +0000
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-From: buildd on caballero <buildd at caballero.debian.org>
-To: buildd-porters at caballero.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on ia64 (dist=sid)
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-Delivered-To: buildd-porters at caballero.debian.org
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on caballero.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (ia64) 04 Nov 2012 11:28 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: ia64
-Hit http://ftp.uk.debian.org sid InRelease
-Hit http://ftp.uk.debian.org sid/main Sources/DiffIndex
-Hit http://incoming.debian.org sid InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://ftp.uk.debian.org sid/contrib Sources/DiffIndex
-Hit http://ftp.uk.debian.org sid/main ia64 Packages/DiffIndex
-Hit http://ftp.uk.debian.org sid/contrib ia64 Packages/DiffIndex
-Hit http://ftp.uk.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://ftp.uk.debian.org sid/main Translation-en/DiffIndex
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Get:2 http://incoming.debian.org sid/main Sources/DiffIndex [7876 B]
-Hit http://incoming.debian.org sid/contrib Sources/DiffIndex
-Get:3 http://incoming.debian.org sid/main ia64 Packages/DiffIndex [7876 B]
-Hit http://incoming.debian.org sid/contrib ia64 Packages/DiffIndex
-Hit http://incoming.debian.org sid/contrib Translation-en/DiffIndex
-Hit http://incoming.debian.org sid/main Translation-en/DiffIndex
-Get:4 http://incoming.debian.org Release [1141 B]
-Ign http://incoming.debian.org sid/main 2012-11-04-0210.01.pdiff
-Ign http://incoming.debian.org sid/main ia64 2012-11-04-0210.01.pdiff
-Get:5 http://incoming.debian.org Sources [16.2 kB]
-Get:6 http://incoming.debian.org Packages [140 kB]
-Hit http://incoming.debian.org sid/main
-Hit http://incoming.debian.org sid/main ia64
-Ign http://incoming.debian.org Translation-en
-Fetched 174 kB in 7s (23.9 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (707 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6.1-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-3)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.2)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.7)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-14)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-28)
-sysvinit: already installed (2.88dsf-28)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6.1-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-8 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.9 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: already installed (9.20120909 >= 9 is satisfied)
-quilt: missing
-python: already installed (2.7.3-1)
-zlib1g-dev: already installed (1:1.2.7.dfsg-13)
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs quilt
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- diffstat
-Suggested packages:
- devscripts procmail graphviz default-mta mail-transport-agent
-The following NEW packages will be installed:
- cdbs diffstat quilt
-0 upgraded, 3 newly installed, 0 to remove and 89 not upgraded.
-Need to get 0 B/495 kB of archives.
-After this operation, 1200 kB of additional disk space will be used.
-Selecting previously unselected package cdbs.
-(Reading database ... 28133 files and directories currently installed.)
-Unpacking cdbs (from .../archives/cdbs_0.4.118_all.deb) ...
-Selecting previously unselected package diffstat.
-Unpacking diffstat (from .../diffstat_1.55-3_ia64.deb) ...
-Selecting previously unselected package quilt.
-Unpacking quilt (from .../archives/quilt_0.60-2_all.deb) ...
-Processing triggers for man-db ...
-Setting up cdbs (0.4.118) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-bpo.5-mckinley ia64 (ia64)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.9 g++-4.6_4.6.3-12 gcc-4.6_4.6.3-12 libc6.1-dev_2.13-35 libstdc++6_4.7.2-4 libstdc++6-4.6-dev_4.6.3-12 linux-libc-dev_3.2.21-3
-Package versions: apt_0.9.7.1 apt-utils_0.9.7.1 aspell_0.60.7~20110707-1 aspell-en_7.1-0-1 autoconf_2.69-1 automake_1:1.11.6-1 autopoint_0.18.1.1-9 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.26 bash_4.2-3 binutils_2.22-7.1 bison_1:2.5.dfsg-2.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 ca-certificates_20120623 cdbs_0.4.118 chrpath_0.13-2 coreutils_8.13-3.2 cpp_4:4.6.3-8 cpp-4.6_4.6.3-12 dash_0.5.7-3 dconf-gsettings-backend_0.12.1-2 dconf-ser [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov 4 09:07:58 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
-dpkg-source: info: applying gzstream.h.patch
-
-Check disc space
-────────────────
-
-
-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
-dpkg-buildpackage: host architecture ia64
- fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="" -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
- * Cleaning-up BamTools API
- * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-dh_clean
- rm -f debian/bedtools.substvars
- rm -f debian/bedtools.*.debhelper
- rm -rf debian/bedtools/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-if [ -d "." ]; then \
- cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
- fi
-Removing patch gzstream.h.patch
-Restoring src/utils/gzstream/gzstream.C
-
-No patches applied
-rm -rf ./.pc
-rm -f debian/stamp-patch*
- debian/rules build-arch
-test -x debian/rules
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
-Applying patch gzstream.h.patch
-patching file src/utils/gzstream/gzstream.C
-
-Now at patch gzstream.h.patch
-touch debian/stamp-patched
-/usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-/usr/bin/make -C . CFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS=""
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-Building BEDTools:
-=========================================================
-DETECTED_VERSION = v2.17.0
-CURRENT_VERSION =
-Updating version file.
- * Creating BamTools API
-- Building in src/utils/bedFile
- * compiling bedFile.cpp
-- Building in src/utils/version
- * compiling version.cpp
-- Building in src/utils/bedGraphFile
- * compiling bedGraphFile.cpp
-- Building in src/utils/chromsweep
- * compiling chromsweep.cpp
-- Building in src/utils/gzstream
-g++ -g -O2 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
-- Building in src/utils/fileType
- * compiling fileType.cpp
-- Building in src/utils/bedFilePE
- * compiling bedFilePE.cpp
-- Building in src/utils/sequenceUtilities
- * compiling sequenceUtils.cpp
-- Building in src/utils/tabFile
- * compiling tabFile.cpp
-- Building in src/utils/BamTools
- * compiling BamAlignment.cpp
- * compiling BamMultiReader.cpp
- * compiling BamReader.cpp
- * compiling BamWriter.cpp
- * compiling SamHeader.cpp
- * compiling SamProgram.cpp
- * compiling SamProgramChain.cpp
- * compiling SamReadGroup.cpp
- * compiling SamReadGroupDictionary.cpp
- * compiling SamSequence.cpp
- * compiling SamSequenceDictionary.cpp
- * compiling BamHeader_p.cpp
- * compiling BamMultiReader_p.cpp
- * compiling BamRandomAccessController_p.cpp
- * compiling BamReader_p.cpp
- * compiling BamWriter_p.cpp
- * compiling BamIndexFactory_p.cpp
- * compiling BamStandardIndex_p.cpp
- * compiling BamToolsIndex_p.cpp
- * compiling BamDeviceFactory_p.cpp
- * compiling BamFile_p.cpp
- * compiling BamFtp_p.cpp
- * compiling BamHttp_p.cpp
-src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendRequest(size_t)':
-src/api/internal/io/BamHttp_p.cpp:396:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
- * compiling BamPipe_p.cpp
- * compiling BgzfStream_p.cpp
- * compiling ByteArray_p.cpp
- * compiling HostAddress_p.cpp
- * compiling HostInfo_p.cpp
- * compiling HttpHeader_p.cpp
- * compiling ILocalIODevice_p.cpp
- * compiling RollingBuffer_p.cpp
- * compiling TcpSocketEngine_p.cpp
- * compiling TcpSocketEngine_unix_p.cpp
- * compiling TcpSocket_p.cpp
-src/api/internal/io/TcpSocket_p.cpp: In member function 'std::string BamTools::Internal::TcpSocket::ReadLine(int64_t)':
-src/api/internal/io/TcpSocket_p.cpp:336:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
- * compiling SamFormatParser_p.cpp
- * compiling SamFormatPrinter_p.cpp
- * compiling SamHeaderValidator_p.cpp
- * compiling BamException_p.cpp
- * linking lib/libbamtools.a
-ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api [...]
-ranlib lib/libbamtools.a
-- Building in src/utils/BamTools-Ancillary
- * compiling BamAncillary.cpp
- * compiling BamAncillary.cpp
-- Building in src/utils/BlockedIntervals
- * compiling BlockedIntervals.cpp
- * compiling BlockedIntervals.cpp
-- Building in src/utils/Fasta
- * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
- * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
- * compiling split.cpp
- * compiling split.cpp
-- Building in src/utils/VectorOps
- * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
- * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
-- Building in src/annotateBed
- * compiling annotateMain.cpp
-annotateMain.cpp: In function 'int annotate_main(int, char**)':
-annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
- * compiling annotateBed.cpp
-- Building in src/bamToBed
- * compiling bamToBed.cpp
-bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
-- Building in src/bamToFastq
- * compiling bamToFastqMain.cpp
-bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
-bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
- * compiling bamToFastq.cpp
-- Building in src/bedToBam
- * compiling bedToBam.cpp
-bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
-bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
-- Building in src/bedpeToBam
- * compiling bedpeToBam.cpp
-bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
-bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
-- Building in src/bedToIgv
- * compiling bedToIgv.cpp
-- Building in src/bed12ToBed6
- * compiling bed12ToBed6.cpp
-- Building in src/closestBed
- * compiling closestMain.cpp
- * compiling closestBed.cpp
-- Building in src/clusterBed
- * compiling clusterMain.cpp
-clusterMain.cpp: In function 'int cluster_main(int, char**)':
-clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
- * compiling clusterBed.cpp
-- Building in src/complementBed
- * compiling complementMain.cpp
- * compiling complementBed.cpp
-- Building in src/coverageBed
- * compiling coverageMain.cpp
- * compiling coverageBed.cpp
-- Building in src/expand
- * compiling expand.cpp
-- Building in src/fastaFromBed
- * compiling fastaFromBedMain.cpp
- * compiling fastaFromBed.cpp
-- Building in src/flankBed
- * compiling flankBedMain.cpp
- * compiling flankBed.cpp
-- Building in src/genomeCoverageBed
- * compiling genomeCoverageMain.cpp
- * compiling genomeCoverageBed.cpp
-- Building in src/getOverlap
- * compiling getOverlap.cpp
-getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
-getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
-- Building in src/groupBy
- * compiling groupBy.cpp
-groupBy.cpp: In function 'int groupby_main(int, char**)':
-groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
- * compiling intersectMain.cpp
- * compiling intersectBed.cpp
-- Building in src/jaccard
- * compiling jaccardMain.cpp
- * compiling jaccard.cpp
-- Building in src/linksBed
- * compiling linksMain.cpp
- * compiling linksBed.cpp
-- Building in src/maskFastaFromBed
- * compiling maskFastaFromBedMain.cpp
- * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
- * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
- * compiling mapBed.cpp
-- Building in src/mergeBed
- * compiling mergeMain.cpp
-mergeMain.cpp: In function 'int merge_main(int, char**)':
-mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
- * compiling mergeBed.cpp
-- Building in src/multiBamCov
- * compiling multiBamCovMain.cpp
-multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
-multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
-multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
-multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling multiBamCov.cpp
-- Building in src/multiIntersectBed
- * compiling multiIntersectBedMain.cpp
-multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
-multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
-multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
-multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
- * compiling multiIntersectBed.cpp
-- Building in src/nucBed
- * compiling nucBedMain.cpp
- * compiling nucBed.cpp
-- Building in src/pairToBed
- * compiling pairToBedMain.cpp
-pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
-pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling pairToBed.cpp
-pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
-pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
-pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
-pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
-- Building in src/pairToPair
- * compiling pairToPairMain.cpp
-pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
-pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling pairToPair.cpp
-pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
-pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
-pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
-- Building in src/randomBed
- * compiling randomBedMain.cpp
- * compiling randomBed.cpp
-- Building in src/shuffleBed
- * compiling shuffleBedMain.cpp
- * compiling shuffleBed.cpp
-- Building in src/slopBed
- * compiling slopBedMain.cpp
- * compiling slopBed.cpp
-- Building in src/sortBed
- * compiling sortMain.cpp
- * compiling sortBed.cpp
-- Building in src/subtractBed
- * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling subtractBed.cpp
-- Building in src/tagBam
- * compiling tagBamMain.cpp
-tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
-tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling tagBam.cpp
-- Building in src/unionBedGraphs
- * compiling unionBedGraphsMain.cpp
-unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
-unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
- * compiling unionBedGraphs.cpp
-- Building in src/windowBed
- * compiling windowMain.cpp
- * compiling windowBed.cpp
-- Building in src/windowMaker
- * compiling windowMakerMain.cpp
- * compiling windowMaker.cpp
-- Building main bedtools binary.
-done.
-- Creating executables for old CLI.
-done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
- fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
- rm -f debian/bedtools.substvars
- rm -f debian/bedtools.*.debhelper
- rm -rf debian/bedtools/
-dh_installdirs -A
- install -d debian/bedtools
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bedtools.substvars
-dh_installdirs -pbedtools
-dh_installdocs -pbedtools
- install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
- cp -a README.rst debian/bedtools/usr/share/doc/bedtools
- chown -R 0:0 debian/bedtools/usr/share/doc
- chmod -R go=rX debian/bedtools/usr/share/doc
- chmod -R u\+rw debian/bedtools/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/copyright debian/bedtools/usr/share/doc/bedtools/copyright
-dh_installexamples -pbedtools
-dh_installman -pbedtools
-dh_installinfo -pbedtools
-dh_installmenu -pbedtools
-dh_installcron -pbedtools
-dh_installinit -pbedtools
-dh_installdebconf -pbedtools
- install -o 0 -g 0 -d debian/bedtools/DEBIAN
-dh_installemacsen -pbedtools
-dh_installcatalogs -pbedtools
- grep -s -v '^misc:Depends=' debian/bedtools.substvars > debian/bedtools.substvars.new || true
- mv debian/bedtools.substvars.new debian/bedtools.substvars
-dh_installpam -pbedtools
-dh_installlogrotate -pbedtools
-dh_installlogcheck -pbedtools
-dh_installchangelogs -pbedtools RELEASE_HISTORY
- install -o 0 -g 0 -p -m644 debian/changelog debian/bedtools/usr/share/doc/bedtools/changelog.Debian
- install -o 0 -g 0 -p -m644 RELEASE_HISTORY debian/bedtools/usr/share/doc/bedtools/changelog
-dh_installudev -pbedtools
-dh_lintian -pbedtools
-dh_bugfiles -pbedtools
-dh_install -pbedtools
- install -d debian/bedtools/usr/bin
- cp -a ./bin/annotateBed debian/bedtools/usr/bin/
- cp -a ./bin/bamToBed debian/bedtools/usr/bin/
- cp -a ./bin/bamToFastq debian/bedtools/usr/bin/
- cp -a ./bin/bed12ToBed6 debian/bedtools/usr/bin/
- cp -a ./bin/bedpeToBam debian/bedtools/usr/bin/
- cp -a ./bin/bedToBam debian/bedtools/usr/bin/
- cp -a ./bin/bedToIgv debian/bedtools/usr/bin/
- cp -a ./bin/bedtools debian/bedtools/usr/bin/
- cp -a ./bin/closestBed debian/bedtools/usr/bin/
- cp -a ./bin/clusterBed debian/bedtools/usr/bin/
- cp -a ./bin/complementBed debian/bedtools/usr/bin/
- cp -a ./bin/coverageBed debian/bedtools/usr/bin/
- cp -a ./bin/expandCols debian/bedtools/usr/bin/
- cp -a ./bin/fastaFromBed debian/bedtools/usr/bin/
- cp -a ./bin/flankBed debian/bedtools/usr/bin/
- cp -a ./bin/genomeCoverageBed debian/bedtools/usr/bin/
- cp -a ./bin/getOverlap debian/bedtools/usr/bin/
- cp -a ./bin/groupBy debian/bedtools/usr/bin/
- cp -a ./bin/intersectBed debian/bedtools/usr/bin/
- cp -a ./bin/linksBed debian/bedtools/usr/bin/
- cp -a ./bin/mapBed debian/bedtools/usr/bin/
- cp -a ./bin/maskFastaFromBed debian/bedtools/usr/bin/
- cp -a ./bin/mergeBed debian/bedtools/usr/bin/
- cp -a ./bin/multiBamCov debian/bedtools/usr/bin/
- cp -a ./bin/multiIntersectBed debian/bedtools/usr/bin/
- cp -a ./bin/nucBed debian/bedtools/usr/bin/
- cp -a ./bin/pairToBed debian/bedtools/usr/bin/
- cp -a ./bin/pairToPair debian/bedtools/usr/bin/
- cp -a ./bin/randomBed debian/bedtools/usr/bin/
- cp -a ./bin/shuffleBed debian/bedtools/usr/bin/
- cp -a ./bin/slopBed debian/bedtools/usr/bin/
- cp -a ./bin/sortBed debian/bedtools/usr/bin/
- cp -a ./bin/subtractBed debian/bedtools/usr/bin/
- cp -a ./bin/tagBam debian/bedtools/usr/bin/
- cp -a ./bin/unionBedGraphs debian/bedtools/usr/bin/
- cp -a ./bin/windowBed debian/bedtools/usr/bin/
- cp -a ./bin/windowMaker debian/bedtools/usr/bin/
- install -d debian/bedtools/usr/share/bedtools
- cp -a ./genomes debian/bedtools/usr/share/bedtools/
- install -d debian/bedtools/usr/share/bedtools/test
- cp -a ./test/bamtobed debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/bed12tobed6 debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/closest debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/cluster debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/coverage debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/expand debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/flank debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/general debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/genomecov debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/getfasta debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/groupBy debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/intersect debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/jaccard debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
- install -d debian/bedtools/etc/bash_completion.d
- cp -a ./debian/bash_completion/bedtools debian/bedtools/etc/bash_completion.d/
-dh_link -pbedtools
-dh_installmime -pbedtools
-dh_installgsettings -pbedtools
-dh_strip -pbedtools
- strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools
-dh_compress -pbedtools -X test
- cd debian/bedtools
- chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
- gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
- cd '/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0'
-dh_fixperms -pbedtools
- find debian/bedtools -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/bedtools ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/bedtools/usr/share/doc -type f ! -regex 'debian/bedtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/bedtools/usr/share/man debian/bedtools/usr/man/ debian/bedtools/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/lib/perl5 debian/bedtools/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/bedtools/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/bedtools/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
-dh_makeshlibs -pbedtools
- rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-ia64-mSVWnX/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
-dh_installdeb -pbedtools
- find debian/bedtools/etc -type f -printf '/etc/%P
-' >> debian/bedtools/DEBIAN/conffiles
- chmod 644 debian/bedtools/DEBIAN/conffiles
-dh_perl -pbedtools
-dh_shlibdeps -pbedtools
- dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
-dh_girepository -pbedtools
- rm -f
-dh_gencontrol -pbedtools
- echo misc:Depends= >> debian/bedtools.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
- chmod 644 debian/bedtools/DEBIAN/control
- chown 0:0 debian/bedtools/DEBIAN/control
-dh_md5sums -pbedtools
- (cd debian/bedtools >/dev/null ; find . -type f ! -path "./etc/bash_completion.d/bedtools" ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/bedtools/DEBIAN/md5sums
- chown 0:0 debian/bedtools/DEBIAN/md5sums
-dh_builddeb -pbedtools -- -Z xz
- dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_ia64.deb'.
- dpkg-genchanges -B -mia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org> >../bedtools_2.17.0-1_ia64.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1139
-
-bedtools_2.17.0-1_ia64.changes:
-Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
-Source: bedtools
-Binary: bedtools
-Architecture: ia64
-Version: 2.17.0-1
-Distribution: sid
-Urgency: low
-Maintainer: ia64 Build Daemon (caballero) <buildd_ia64-caballero at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- bedtools - suite of utilities for comparing genomic features
-Changes:
- bedtools (2.17.0-1) unstable; urgency=low
- .
- bb9012e Imported Upstream version 2.16.2.
- 9006b23 Imported Upstream version 2.17.0.
- 9112569 Documented BEDTools license as a whole.
- 325689c Removed Pre-Depends: dpkg (>= 1.15.6).
- a781b14 Conforms with Policy 3.9.4.
- 84b1167 Use Debhelper 9.
- 0bf572d Distribute the test suite.
- 422cd34 Bash completion for BEDTools.
-Checksums-Sha1:
- 3bcf36fabe68935cc660f121a4f232747089f792 574956 bedtools_2.17.0-1_ia64.deb
-Checksums-Sha256:
- 7c3b6b390baf728866dd64e2fa3fb2a6dc7343adf63f61a141342bb06394dc36 574956 bedtools_2.17.0-1_ia64.deb
-Files:
- d6e2d1b1728ade6201caaaff86290b03 574956 science optional bedtools_2.17.0-1_ia64.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-bedtools_2.17.0-1_ia64.deb
-──────────────────────────
-
- new debian package, version 2.0.
- size 574956 bytes: control archive= 4115 bytes.
- 32 bytes, 1 lines conffiles
- 846 bytes, 18 lines control
- 9605 bytes, 132 lines md5sums
- Package: bedtools
- Version: 2.17.0-1
- Architecture: ia64
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 3132
- Depends: libc6.1 (>= 2.2), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), libunwind7, zlib1g (>= 1:1.1.4)
- Suggests: filo
- Section: science
- Priority: optional
- Homepage: http://code.google.com/p/bedtools/
- Description: suite of utilities for comparing genomic features
- The BEDTools utilities allow one to address common genomics tasks such as
- finding feature overlaps and computing coverage. The utilities are largely
- based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
- BEDTools, one can develop sophisticated pipelines that answer complicated
- research questions by streaming several BEDTools together.
- .
- The groupBy utility is distribued in the filo package.
-
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./usr/
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./usr/share/
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./usr/share/doc/bedtools/
--rw-r--r-- root/root 1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
--rw-r--r-- root/root 5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root 11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root 1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./usr/share/bedtools/
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root 856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root 1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root 565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root 585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./usr/share/bedtools/test/
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root 3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root 176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
--rw-r--r-- root/root 167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root 46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root 1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root 52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root 35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root 36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
--rw-r--r-- root/root 2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root 264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
--rw-r--r-- root/root 1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root 156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root 142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root 988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root 171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root 52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
--rw-r--r-- root/root 1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root 41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root 3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root 10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root 1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root 156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root 142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root 3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root 171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root 117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root 0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root 61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
--rw-r--r-- root/root 16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root 1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root 885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
--rw-r--r-- root/root 250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root 38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root 76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root 255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root 10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root 176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root 167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root 38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root 77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root 825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root 72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root 2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root 147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root 186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root 227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root 46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root 147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
--rw-r--r-- root/root 57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root 3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root 72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root 3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
--rw-r--r-- root/root 167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root 41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root 3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root 10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
-drwxr-xr-x root/root 0 2012-11-04 11:28 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root 36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root 36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
--rw-r--r-- root/root 2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
--rw-r--r-- root/root 1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./usr/bin/
--rwxr-xr-x root/root 41 2012-11-04 11:39 ./usr/bin/annotateBed
--rwxr-xr-x root/root 41 2012-11-04 11:39 ./usr/bin/bamToBed
--rwxr-xr-x root/root 43 2012-11-04 11:39 ./usr/bin/bamToFastq
--rwxr-xr-x root/root 44 2012-11-04 11:39 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root 43 2012-11-04 11:39 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root 41 2012-11-04 11:39 ./usr/bin/bedToBam
--rwxr-xr-x root/root 36 2012-11-04 11:39 ./usr/bin/bedToIgv
--rwxr-xr-x root/root 3001192 2012-11-04 11:39 ./usr/bin/bedtools
--rwxr-xr-x root/root 40 2012-11-04 11:39 ./usr/bin/closestBed
--rwxr-xr-x root/root 40 2012-11-04 11:39 ./usr/bin/clusterBed
--rwxr-xr-x root/root 43 2012-11-04 11:39 ./usr/bin/complementBed
--rwxr-xr-x root/root 41 2012-11-04 11:39 ./usr/bin/coverageBed
--rwxr-xr-x root/root 39 2012-11-04 11:39 ./usr/bin/expandCols
--rwxr-xr-x root/root 41 2012-11-04 11:39 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root 38 2012-11-04 11:39 ./usr/bin/flankBed
--rwxr-xr-x root/root 42 2012-11-04 11:39 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root 40 2012-11-04 11:39 ./usr/bin/getOverlap
--rwxr-xr-x root/root 42 2012-11-04 11:39 ./usr/bin/intersectBed
--rwxr-xr-x root/root 38 2012-11-04 11:39 ./usr/bin/linksBed
--rwxr-xr-x root/root 36 2012-11-04 11:39 ./usr/bin/mapBed
--rwxr-xr-x root/root 42 2012-11-04 11:39 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root 38 2012-11-04 11:39 ./usr/bin/mergeBed
--rwxr-xr-x root/root 41 2012-11-04 11:39 ./usr/bin/multiBamCov
--rwxr-xr-x root/root 43 2012-11-04 11:39 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root 36 2012-11-04 11:39 ./usr/bin/nucBed
--rwxr-xr-x root/root 42 2012-11-04 11:39 ./usr/bin/pairToBed
--rwxr-xr-x root/root 43 2012-11-04 11:39 ./usr/bin/pairToPair
--rwxr-xr-x root/root 39 2012-11-04 11:39 ./usr/bin/randomBed
--rwxr-xr-x root/root 40 2012-11-04 11:39 ./usr/bin/shuffleBed
--rwxr-xr-x root/root 37 2012-11-04 11:39 ./usr/bin/slopBed
--rwxr-xr-x root/root 37 2012-11-04 11:39 ./usr/bin/sortBed
--rwxr-xr-x root/root 41 2012-11-04 11:39 ./usr/bin/subtractBed
--rwxr-xr-x root/root 36 2012-11-04 11:39 ./usr/bin/tagBam
--rwxr-xr-x root/root 42 2012-11-04 11:39 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root 39 2012-11-04 11:39 ./usr/bin/windowBed
--rwxr-xr-x root/root 44 2012-11-04 11:39 ./usr/bin/windowMaker
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./etc/
-drwxr-xr-x root/root 0 2012-11-04 11:39 ./etc/bash_completion.d/
--rw-r--r-- root/root 638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-ia64-sbuild-3bbca110-4cb3-4694-a4e6-de94777c3b7a/build/buildd-bedtools_2.17.0-1-ia64-mSVWnX
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 89 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- cdbs* diffstat* quilt*
-0 upgraded, 0 newly installed, 3 to remove and 89 not upgraded.
-After this operation, 1200 kB disk space will be freed.
-(Reading database ... 28268 files and directories currently installed.)
-Removing cdbs ...
-Removing quilt ...
-Purging configuration files for quilt ...
-Removing diffstat ...
-Processing triggers for man-db ...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: ia64
-Build-Space: 134348
-Build-Time: 639
-Distribution: sid
-Install-Time: 14
-Job: bedtools_2.17.0-1
-Package: bedtools
-Package-Time: 674
-Source-Version: 2.17.0-1
-Space: 134348
-Status: successful
-Version: 2.17.0-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1139
-Build needed 00:11:14, 134348k disc space
-
diff --git a/s390.log b/s390.log
deleted file mode 100644
index 6c0ca69..0000000
--- a/s390.log
+++ /dev/null
@@ -1,2150 +0,0 @@
-From buildd at zandonai.debian.org Sun Nov 04 11:33:49 2012
-Return-path: <buildd at zandonai.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
- from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA,
- CN=merikanto.debian.org,
- EMAIL=hostmaster at merikanto.debian.org (verified)
- by grieg.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1TUySb-0000z5-93
- for logs at buildd.debian.org; Sun, 04 Nov 2012 11:33:49 +0000
-Received: from zandonai.debian.org ([80.245.147.46])
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- EMAIL=hostmaster at zandonai.debian.org (verified)
- by merikanto.debian.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
- (Exim 4.72) (envelope-from <buildd at zandonai.debian.org>)
- id 1TUySa-000507-9q; Sun, 04 Nov 2012 11:33:48 +0000
-Received: from buildd by zandonai.debian.org with local (Exim 4.72)
- (envelope-from <buildd at zandonai.debian.org>)
- id 1TUySZ-0002W5-TQ; Sun, 04 Nov 2012 11:33:47 +0000
-Message-Id: <E1TUySZ-0002W5-TQ at zandonai.debian.org>
-MIME-Version: 1.0
-Content-Transfer-Encoding: binary
-X-Mailer: MIME::Lite 3.027 (F2.77; B3.08; Q3.08)
-Date: Sun, 4 Nov 2012 11:33:47 +0000
-From: buildd on zandonai <buildd at zandonai.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on s390 (dist=sid)
-Key-Id: E7C67939
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zandonai.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (s390) 04 Nov 2012 11:31 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: s390
-Hit http://ftp.de.debian.org unstable InRelease
-Hit http://ftp.de.debian.org unstable/main Sources
-Hit http://ftp.de.debian.org unstable/contrib Sources
-Hit http://ftp.de.debian.org unstable/non-free Sources
-Hit http://ftp.de.debian.org unstable/main s390 Packages
-Hit http://ftp.de.debian.org unstable/contrib s390 Packages
-Hit http://incoming.debian.org unstable InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org unstable/main Sources
-Hit http://incoming.debian.org unstable/contrib Sources
-Hit http://incoming.debian.org unstable/non-free Sources
-Hit http://incoming.debian.org unstable/main s390 Packages
-Hit http://incoming.debian.org unstable/contrib s390 Packages
-Get:1 http://incoming.debian.org Release.gpg [836 B]
-Get:2 http://incoming.debian.org Release [1141 B]
-Get:3 http://incoming.debian.org Sources [16.2 kB]
-Get:4 http://incoming.debian.org Packages [140 kB]
-Fetched 158 kB in 2s (73.7 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 2s (449 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-base-files: already installed (6.11)
-base-passwd: already installed (3.5.26)
-bash: already installed (4.2-5)
-coreutils: already installed (8.13-3.2)
-dash: already installed (0.5.7-3)
-debianutils: already installed (4.3.3)
-diffutils: already installed (1:3.2-6)
-dpkg: already installed (1.16.8)
-e2fsprogs: already installed (1.42.5-1)
-findutils: already installed (4.4.2-4)
-grep: already installed (2.12-2)
-gzip: already installed (1.5-1.1)
-hostname: already installed (3.11)
-ncurses-base: already installed (5.9-10)
-ncurses-bin: already installed (5.9-10)
-perl-base: already installed (5.14.2-12)
-sed: already installed (4.2.1-10)
-login: already installed (1:4.1.5.1-1)
-sysvinit-utils: already installed (2.88dsf-32)
-sysvinit: already installed (2.88dsf-32)
-tar: already installed (1.26-4)
-bsdutils: already installed (1:2.20.1-5.1)
-mount: already installed (2.20.1-5.1)
-util-linux: already installed (2.20.1-5.1)
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils diffstat file gettext gettext-base groff-base html2text
- intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
- libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
- libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
- python-minimal python2.7 python2.7-minimal
-Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
- www-browser libmail-box-perl python-doc python-tk python2.7-doc
- binfmt-support procmail graphviz default-mta mail-transport-agent
-Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- libgpm2 xml-core libmail-sendmail-perl
-The following NEW packages will be installed:
- bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
- libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
- po-debconf python python-minimal python2.7 python2.7-minimal quilt
- zlib1g-dev
-0 upgraded, 33 newly installed, 0 to remove and 45 not upgraded.
-Need to get 17.0 MB of archives.
-After this operation, 47.9 MB of additional disk space will be used.
-Get:1 http://ftp.de.debian.org/debian/ unstable/main libncursesw5 s390 5.9-10 [141 kB]
-Get:2 http://ftp.de.debian.org/debian/ unstable/main libpipeline1 s390 1.2.2-1 [40.6 kB]
-Get:3 http://ftp.de.debian.org/debian/ unstable/main libssl1.0.0 s390 1.0.1c-4 [1259 kB]
-Get:4 http://ftp.de.debian.org/debian/ unstable/main libasprintf0c2 s390 0.18.1.1-9 [26.8 kB]
-Get:5 http://ftp.de.debian.org/debian/ unstable/main libmagic1 s390 5.11-2 [205 kB]
-Get:6 http://ftp.de.debian.org/debian/ unstable/main libpcre3 s390 1:8.31-1 [253 kB]
-Get:7 http://ftp.de.debian.org/debian/ unstable/main libsqlite3-0 s390 3.7.14.1-1 [476 kB]
-Get:8 http://ftp.de.debian.org/debian/ unstable/main libxml2 s390 2.8.0+dfsg1-6 [892 kB]
-Get:9 http://ftp.de.debian.org/debian/ unstable/main libffi5 s390 3.0.10-3 [25.3 kB]
-Get:10 http://ftp.de.debian.org/debian/ unstable/main libglib2.0-0 s390 2.33.12+really2.32.4-3 [1785 kB]
-Get:11 http://ftp.de.debian.org/debian/ unstable/main libcroco3 s390 0.6.6-1 [128 kB]
-Get:12 http://ftp.de.debian.org/debian/ unstable/main libexpat1 s390 2.1.0-1 [140 kB]
-Get:13 http://ftp.de.debian.org/debian/ unstable/main libunistring0 s390 0.9.3-5 [433 kB]
-Get:14 http://ftp.de.debian.org/debian/ unstable/main libgettextpo0 s390 0.18.1.1-9 [146 kB]
-Get:15 http://ftp.de.debian.org/debian/ unstable/main bsdmainutils s390 9.0.3 [213 kB]
-Get:16 http://ftp.de.debian.org/debian/ unstable/main groff-base s390 1.21-9 [1148 kB]
-Get:17 http://ftp.de.debian.org/debian/ unstable/main man-db s390 2.6.3-1 [1065 kB]
-Get:18 http://ftp.de.debian.org/debian/ unstable/main file s390 5.11-2 [52.0 kB]
-Get:19 http://ftp.de.debian.org/debian/ unstable/main gettext-base s390 0.18.1.1-9 [152 kB]
-Get:20 http://ftp.de.debian.org/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:21 http://ftp.de.debian.org/debian/ unstable/main python2.7-minimal s390 2.7.3-5 [1700 kB]
-Get:22 http://ftp.de.debian.org/debian/ unstable/main python2.7 s390 2.7.3-5 [2691 kB]
-Get:23 http://ftp.de.debian.org/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:24 http://ftp.de.debian.org/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:25 http://ftp.de.debian.org/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:26 http://ftp.de.debian.org/debian/ unstable/main html2text s390 1.3.2a-15 [101 kB]
-Get:27 http://ftp.de.debian.org/debian/ unstable/main gettext s390 0.18.1.1-9 [1959 kB]
-Get:28 http://ftp.de.debian.org/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:29 http://ftp.de.debian.org/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:30 http://ftp.de.debian.org/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:31 http://ftp.de.debian.org/debian/ unstable/main diffstat s390 1.55-3 [29.8 kB]
-Get:32 http://ftp.de.debian.org/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:33 http://ftp.de.debian.org/debian/ unstable/main zlib1g-dev s390 1:1.2.7.dfsg-13 [215 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 17.0 MB in 7s (2149 kB/s)
-Selecting previously unselected package libncursesw5:s390.
-(Reading database ... 10684 files and directories currently installed.)
-Unpacking libncursesw5:s390 (from .../libncursesw5_5.9-10_s390.deb) ...
-Selecting previously unselected package libpipeline1:s390.
-Unpacking libpipeline1:s390 (from .../libpipeline1_1.2.2-1_s390.deb) ...
-Selecting previously unselected package libssl1.0.0:s390.
-Unpacking libssl1.0.0:s390 (from .../libssl1.0.0_1.0.1c-4_s390.deb) ...
-Selecting previously unselected package libasprintf0c2:s390.
-Unpacking libasprintf0c2:s390 (from .../libasprintf0c2_0.18.1.1-9_s390.deb) ...
-Selecting previously unselected package libmagic1:s390.
-Unpacking libmagic1:s390 (from .../libmagic1_5.11-2_s390.deb) ...
-Selecting previously unselected package libpcre3:s390.
-Unpacking libpcre3:s390 (from .../libpcre3_1%3a8.31-1_s390.deb) ...
-Selecting previously unselected package libsqlite3-0:s390.
-Unpacking libsqlite3-0:s390 (from .../libsqlite3-0_3.7.14.1-1_s390.deb) ...
-Selecting previously unselected package libxml2:s390.
-Unpacking libxml2:s390 (from .../libxml2_2.8.0+dfsg1-6_s390.deb) ...
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-Unpacking libffi5:s390 (from .../libffi5_3.0.10-3_s390.deb) ...
-Selecting previously unselected package libglib2.0-0:s390.
-Unpacking libglib2.0-0:s390 (from .../libglib2.0-0_2.33.12+really2.32.4-3_s390.deb) ...
-Selecting previously unselected package libcroco3:s390.
-Unpacking libcroco3:s390 (from .../libcroco3_0.6.6-1_s390.deb) ...
-Selecting previously unselected package libexpat1:s390.
-Unpacking libexpat1:s390 (from .../libexpat1_2.1.0-1_s390.deb) ...
-Selecting previously unselected package libunistring0:s390.
-Unpacking libunistring0:s390 (from .../libunistring0_0.9.3-5_s390.deb) ...
-Selecting previously unselected package libgettextpo0:s390.
-Unpacking libgettextpo0:s390 (from .../libgettextpo0_0.18.1.1-9_s390.deb) ...
-Selecting previously unselected package bsdmainutils.
-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_s390.deb) ...
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-Selecting previously unselected package zlib1g-dev:s390.
-Unpacking zlib1g-dev:s390 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_s390.deb) ...
-Setting up libncursesw5:s390 (5.9-10) ...
-Setting up libpipeline1:s390 (1.2.2-1) ...
-Setting up libssl1.0.0:s390 (1.0.1c-4) ...
-Setting up libasprintf0c2:s390 (0.18.1.1-9) ...
-Setting up libmagic1:s390 (5.11-2) ...
-Setting up libpcre3:s390 (1:8.31-1) ...
-Setting up libsqlite3-0:s390 (3.7.14.1-1) ...
-Setting up libxml2:s390 (2.8.0+dfsg1-6) ...
-Setting up libffi5:s390 (3.0.10-3) ...
-Setting up libglib2.0-0:s390 (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:s390 (0.6.6-1) ...
-Setting up libexpat1:s390 (2.1.0-1) ...
-Setting up libunistring0:s390 (0.9.3-5) ...
-Setting up libgettextpo0:s390 (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
-update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15) ...
-Setting up gettext (0.18.1.1-9) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:s390 (1:1.2.7.dfsg-13) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 45 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-s390x s390 (s390x)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.8 g++-4.6_4.6.3-9 gcc-4.6_4.6.3-9 libc6-dev_2.13-35 libstdc++6_4.7.1-7 libstdc++6-4.6-dev_4.6.3-9 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-9 dash_0.5.7-3 debconf_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.8 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_5.11-2 findutils_4.4.2- [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov 4 09:07:58 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
-dpkg-source: info: applying gzstream.h.patch
-
-Check disc space
-────────────────
-
-
-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
-dpkg-buildpackage: host architecture s390
- fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
- * Cleaning-up BamTools API
- * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-dh_clean
- rm -f debian/bedtools.substvars
- rm -f debian/bedtools.*.debhelper
- rm -rf debian/bedtools/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-if [ -d "." ]; then \
- cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
- fi
-Removing patch gzstream.h.patch
-Restoring src/utils/gzstream/gzstream.C
-
-No patches applied
-rm -rf ./.pc
-rm -f debian/stamp-patch*
- debian/rules build-arch
-test -x debian/rules
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
-Applying patch gzstream.h.patch
-patching file src/utils/gzstream/gzstream.C
-
-Now at patch gzstream.h.patch
-touch debian/stamp-patched
-/usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-/usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-Building BEDTools:
-=========================================================
-DETECTED_VERSION = v2.17.0
-CURRENT_VERSION =
-Updating version file.
- * Creating BamTools API
-- Building in src/utils/bedFile
- * compiling bedFile.cpp
-- Building in src/utils/version
- * compiling version.cpp
-- Building in src/utils/bedGraphFile
- * compiling bedGraphFile.cpp
-- Building in src/utils/chromsweep
- * compiling chromsweep.cpp
-- Building in src/utils/gzstream
-g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
-- Building in src/utils/fileType
- * compiling fileType.cpp
-- Building in src/utils/bedFilePE
- * compiling bedFilePE.cpp
-- Building in src/utils/sequenceUtilities
- * compiling sequenceUtils.cpp
-- Building in src/utils/tabFile
- * compiling tabFile.cpp
-- Building in src/utils/BamTools
- * compiling BamAlignment.cpp
- * compiling BamMultiReader.cpp
- * compiling BamReader.cpp
- * compiling BamWriter.cpp
- * compiling SamHeader.cpp
- * compiling SamProgram.cpp
- * compiling SamProgramChain.cpp
- * compiling SamReadGroup.cpp
- * compiling SamReadGroupDictionary.cpp
- * compiling SamSequence.cpp
- * compiling SamSequenceDictionary.cpp
- * compiling BamHeader_p.cpp
- * compiling BamMultiReader_p.cpp
- * compiling BamRandomAccessController_p.cpp
- * compiling BamReader_p.cpp
- * compiling BamWriter_p.cpp
- * compiling BamIndexFactory_p.cpp
- * compiling BamStandardIndex_p.cpp
- * compiling BamToolsIndex_p.cpp
- * compiling BamDeviceFactory_p.cpp
- * compiling BamFile_p.cpp
- * compiling BamFtp_p.cpp
- * compiling BamHttp_p.cpp
- * compiling BamPipe_p.cpp
- * compiling BgzfStream_p.cpp
- * compiling ByteArray_p.cpp
- * compiling HostAddress_p.cpp
- * compiling HostInfo_p.cpp
- * compiling HttpHeader_p.cpp
- * compiling ILocalIODevice_p.cpp
- * compiling RollingBuffer_p.cpp
- * compiling TcpSocketEngine_p.cpp
- * compiling TcpSocketEngine_unix_p.cpp
- * compiling TcpSocket_p.cpp
- * compiling SamFormatParser_p.cpp
- * compiling SamFormatPrinter_p.cpp
- * compiling SamHeaderValidator_p.cpp
- * compiling BamException_p.cpp
- * linking lib/libbamtools.a
-ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api [...]
-ranlib lib/libbamtools.a
-- Building in src/utils/BamTools-Ancillary
- * compiling BamAncillary.cpp
- * compiling BamAncillary.cpp
-- Building in src/utils/BlockedIntervals
- * compiling BlockedIntervals.cpp
- * compiling BlockedIntervals.cpp
-- Building in src/utils/Fasta
- * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
- * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
- * compiling split.cpp
- * compiling split.cpp
-- Building in src/utils/VectorOps
- * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
- * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
-- Building in src/annotateBed
- * compiling annotateMain.cpp
-annotateMain.cpp: In function 'int annotate_main(int, char**)':
-annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
- * compiling annotateBed.cpp
-- Building in src/bamToBed
- * compiling bamToBed.cpp
-bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
-- Building in src/bamToFastq
- * compiling bamToFastqMain.cpp
-bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
-bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
- * compiling bamToFastq.cpp
-- Building in src/bedToBam
- * compiling bedToBam.cpp
-bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
-bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
-- Building in src/bedpeToBam
- * compiling bedpeToBam.cpp
-bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
-bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
-- Building in src/bedToIgv
- * compiling bedToIgv.cpp
-- Building in src/bed12ToBed6
- * compiling bed12ToBed6.cpp
-- Building in src/closestBed
- * compiling closestMain.cpp
- * compiling closestBed.cpp
-- Building in src/clusterBed
- * compiling clusterMain.cpp
-clusterMain.cpp: In function 'int cluster_main(int, char**)':
-clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
- * compiling clusterBed.cpp
-- Building in src/complementBed
- * compiling complementMain.cpp
- * compiling complementBed.cpp
-- Building in src/coverageBed
- * compiling coverageMain.cpp
- * compiling coverageBed.cpp
-- Building in src/expand
- * compiling expand.cpp
-- Building in src/fastaFromBed
- * compiling fastaFromBedMain.cpp
- * compiling fastaFromBed.cpp
-- Building in src/flankBed
- * compiling flankBedMain.cpp
- * compiling flankBed.cpp
-- Building in src/genomeCoverageBed
- * compiling genomeCoverageMain.cpp
- * compiling genomeCoverageBed.cpp
-- Building in src/getOverlap
- * compiling getOverlap.cpp
-getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
-getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
-- Building in src/groupBy
- * compiling groupBy.cpp
-groupBy.cpp: In function 'int groupby_main(int, char**)':
-groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
- * compiling intersectMain.cpp
- * compiling intersectBed.cpp
-- Building in src/jaccard
- * compiling jaccardMain.cpp
- * compiling jaccard.cpp
-- Building in src/linksBed
- * compiling linksMain.cpp
- * compiling linksBed.cpp
-- Building in src/maskFastaFromBed
- * compiling maskFastaFromBedMain.cpp
- * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
- * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
- * compiling mapBed.cpp
-- Building in src/mergeBed
- * compiling mergeMain.cpp
-mergeMain.cpp: In function 'int merge_main(int, char**)':
-mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
- * compiling mergeBed.cpp
-- Building in src/multiBamCov
- * compiling multiBamCovMain.cpp
-multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
-multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
-multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
-multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling multiBamCov.cpp
-- Building in src/multiIntersectBed
- * compiling multiIntersectBedMain.cpp
-multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
-multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
-multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
-multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
- * compiling multiIntersectBed.cpp
-- Building in src/nucBed
- * compiling nucBedMain.cpp
- * compiling nucBed.cpp
-- Building in src/pairToBed
- * compiling pairToBedMain.cpp
-pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
-pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling pairToBed.cpp
-pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
-pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
-pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
-pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
-- Building in src/pairToPair
- * compiling pairToPairMain.cpp
-pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
-pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling pairToPair.cpp
-pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
-pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
-pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
-- Building in src/randomBed
- * compiling randomBedMain.cpp
- * compiling randomBed.cpp
-- Building in src/shuffleBed
- * compiling shuffleBedMain.cpp
- * compiling shuffleBed.cpp
-- Building in src/slopBed
- * compiling slopBedMain.cpp
- * compiling slopBed.cpp
-- Building in src/sortBed
- * compiling sortMain.cpp
- * compiling sortBed.cpp
-- Building in src/subtractBed
- * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling subtractBed.cpp
-- Building in src/tagBam
- * compiling tagBamMain.cpp
-tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
-tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling tagBam.cpp
-- Building in src/unionBedGraphs
- * compiling unionBedGraphsMain.cpp
-unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
-unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
- * compiling unionBedGraphs.cpp
-- Building in src/windowBed
- * compiling windowMain.cpp
- * compiling windowBed.cpp
-- Building in src/windowMaker
- * compiling windowMakerMain.cpp
- * compiling windowMaker.cpp
-- Building main bedtools binary.
-done.
-- Creating executables for old CLI.
-done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
- fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
- rm -f debian/bedtools.substvars
- rm -f debian/bedtools.*.debhelper
- rm -rf debian/bedtools/
-dh_installdirs -A
- install -d debian/bedtools
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bedtools.substvars
-dh_installdirs -pbedtools
-dh_installdocs -pbedtools
- install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
- cp -a README.rst debian/bedtools/usr/share/doc/bedtools
- chown -R 0:0 debian/bedtools/usr/share/doc
- chmod -R go=rX debian/bedtools/usr/share/doc
- chmod -R u\+rw debian/bedtools/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/copyright debian/bedtools/usr/share/doc/bedtools/copyright
-dh_installexamples -pbedtools
-dh_installman -pbedtools
-dh_installinfo -pbedtools
-dh_installmenu -pbedtools
-dh_installcron -pbedtools
-dh_installinit -pbedtools
-dh_installdebconf -pbedtools
- install -o 0 -g 0 -d debian/bedtools/DEBIAN
-dh_installemacsen -pbedtools
-dh_installcatalogs -pbedtools
- grep -s -v '^misc:Depends=' debian/bedtools.substvars > debian/bedtools.substvars.new || true
- mv debian/bedtools.substvars.new debian/bedtools.substvars
-dh_installpam -pbedtools
-dh_installlogrotate -pbedtools
-dh_installlogcheck -pbedtools
-dh_installchangelogs -pbedtools RELEASE_HISTORY
- install -o 0 -g 0 -p -m644 debian/changelog debian/bedtools/usr/share/doc/bedtools/changelog.Debian
- install -o 0 -g 0 -p -m644 RELEASE_HISTORY debian/bedtools/usr/share/doc/bedtools/changelog
-dh_installudev -pbedtools
-dh_lintian -pbedtools
-dh_bugfiles -pbedtools
-dh_install -pbedtools
- install -d debian/bedtools/usr/bin
- cp -a ./bin/annotateBed debian/bedtools/usr/bin/
- cp -a ./bin/bamToBed debian/bedtools/usr/bin/
- cp -a ./bin/bamToFastq debian/bedtools/usr/bin/
- cp -a ./bin/bed12ToBed6 debian/bedtools/usr/bin/
- cp -a ./bin/bedpeToBam debian/bedtools/usr/bin/
- cp -a ./bin/bedToBam debian/bedtools/usr/bin/
- cp -a ./bin/bedToIgv debian/bedtools/usr/bin/
- cp -a ./bin/bedtools debian/bedtools/usr/bin/
- cp -a ./bin/closestBed debian/bedtools/usr/bin/
- cp -a ./bin/clusterBed debian/bedtools/usr/bin/
- cp -a ./bin/complementBed debian/bedtools/usr/bin/
- cp -a ./bin/coverageBed debian/bedtools/usr/bin/
- cp -a ./bin/expandCols debian/bedtools/usr/bin/
- cp -a ./bin/fastaFromBed debian/bedtools/usr/bin/
- cp -a ./bin/flankBed debian/bedtools/usr/bin/
- cp -a ./bin/genomeCoverageBed debian/bedtools/usr/bin/
- cp -a ./bin/getOverlap debian/bedtools/usr/bin/
- cp -a ./bin/groupBy debian/bedtools/usr/bin/
- cp -a ./bin/intersectBed debian/bedtools/usr/bin/
- cp -a ./bin/linksBed debian/bedtools/usr/bin/
- cp -a ./bin/mapBed debian/bedtools/usr/bin/
- cp -a ./bin/maskFastaFromBed debian/bedtools/usr/bin/
- cp -a ./bin/mergeBed debian/bedtools/usr/bin/
- cp -a ./bin/multiBamCov debian/bedtools/usr/bin/
- cp -a ./bin/multiIntersectBed debian/bedtools/usr/bin/
- cp -a ./bin/nucBed debian/bedtools/usr/bin/
- cp -a ./bin/pairToBed debian/bedtools/usr/bin/
- cp -a ./bin/pairToPair debian/bedtools/usr/bin/
- cp -a ./bin/randomBed debian/bedtools/usr/bin/
- cp -a ./bin/shuffleBed debian/bedtools/usr/bin/
- cp -a ./bin/slopBed debian/bedtools/usr/bin/
- cp -a ./bin/sortBed debian/bedtools/usr/bin/
- cp -a ./bin/subtractBed debian/bedtools/usr/bin/
- cp -a ./bin/tagBam debian/bedtools/usr/bin/
- cp -a ./bin/unionBedGraphs debian/bedtools/usr/bin/
- cp -a ./bin/windowBed debian/bedtools/usr/bin/
- cp -a ./bin/windowMaker debian/bedtools/usr/bin/
- install -d debian/bedtools/usr/share/bedtools
- cp -a ./genomes debian/bedtools/usr/share/bedtools/
- install -d debian/bedtools/usr/share/bedtools/test
- cp -a ./test/bamtobed debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/bed12tobed6 debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/closest debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/cluster debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/coverage debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/expand debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/flank debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/general debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/genomecov debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/getfasta debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/groupBy debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/intersect debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/jaccard debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
- install -d debian/bedtools/etc/bash_completion.d
- cp -a ./debian/bash_completion/bedtools debian/bedtools/etc/bash_completion.d/
-dh_link -pbedtools
-dh_installmime -pbedtools
-dh_installgsettings -pbedtools
-dh_strip -pbedtools
- strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools
-dh_compress -pbedtools -X test
- cd debian/bedtools
- chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
- gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
- cd '/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0'
-dh_fixperms -pbedtools
- find debian/bedtools -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/bedtools ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/bedtools/usr/share/doc -type f ! -regex 'debian/bedtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/bedtools/usr/share/man debian/bedtools/usr/man/ debian/bedtools/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/lib/perl5 debian/bedtools/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/bedtools/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/bedtools/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
-dh_makeshlibs -pbedtools
- rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-s390-Hwm_nv/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
-dh_installdeb -pbedtools
- find debian/bedtools/etc -type f -printf '/etc/%P
-' >> debian/bedtools/DEBIAN/conffiles
- chmod 644 debian/bedtools/DEBIAN/conffiles
-dh_perl -pbedtools
-dh_shlibdeps -pbedtools
- dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
-dh_gencontrol -pbedtools
- echo misc:Depends= >> debian/bedtools.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
- chmod 644 debian/bedtools/DEBIAN/control
- chown 0:0 debian/bedtools/DEBIAN/control
-dh_md5sums -pbedtools
- (cd debian/bedtools >/dev/null ; find . -type f ! -path "./etc/bash_completion.d/bedtools" ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/bedtools/DEBIAN/md5sums
- chown 0:0 debian/bedtools/DEBIAN/md5sums
-dh_builddeb -pbedtools -- -Z xz
- dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_s390.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org> >../bedtools_2.17.0-1_s390.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1133
-
-bedtools_2.17.0-1_s390.changes:
-Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
-Source: bedtools
-Binary: bedtools
-Architecture: s390
-Version: 2.17.0-1
-Distribution: sid
-Urgency: low
-Maintainer: s390/s390x Build Daemon (zandonai) <buildd_s390-zandonai at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- bedtools - suite of utilities for comparing genomic features
-Changes:
- bedtools (2.17.0-1) unstable; urgency=low
- .
- bb9012e Imported Upstream version 2.16.2.
- 9006b23 Imported Upstream version 2.17.0.
- 9112569 Documented BEDTools license as a whole.
- 325689c Removed Pre-Depends: dpkg (>= 1.15.6).
- a781b14 Conforms with Policy 3.9.4.
- 84b1167 Use Debhelper 9.
- 0bf572d Distribute the test suite.
- 422cd34 Bash completion for BEDTools.
-Checksums-Sha1:
- df49331644d3d3657db5efd6eda32935275a3ea9 407892 bedtools_2.17.0-1_s390.deb
-Checksums-Sha256:
- b685a8b7ad2949d24f1f65ef002d76b36835c92c6d464341b9c26511d7d09946 407892 bedtools_2.17.0-1_s390.deb
-Files:
- f819594f017a84f8fa94d3de20a5d1bf 407892 science optional bedtools_2.17.0-1_s390.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-bedtools_2.17.0-1_s390.deb
-──────────────────────────
-
- new debian package, version 2.0.
- size 407892 bytes: control archive= 4100 bytes.
- 32 bytes, 1 lines conffiles
- 832 bytes, 18 lines control
- 9605 bytes, 132 lines md5sums
- Package: bedtools
- Version: 2.17.0-1
- Architecture: s390
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1564
- Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
- Suggests: filo
- Section: science
- Priority: optional
- Homepage: http://code.google.com/p/bedtools/
- Description: suite of utilities for comparing genomic features
- The BEDTools utilities allow one to address common genomics tasks such as
- finding feature overlaps and computing coverage. The utilities are largely
- based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
- BEDTools, one can develop sophisticated pipelines that answer complicated
- research questions by streaming several BEDTools together.
- .
- The groupBy utility is distribued in the filo package.
-
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./usr/
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./usr/bin/
--rwxr-xr-x root/root 41 2012-11-04 11:33 ./usr/bin/coverageBed
--rwxr-xr-x root/root 38 2012-11-04 11:33 ./usr/bin/linksBed
--rwxr-xr-x root/root 40 2012-11-04 11:33 ./usr/bin/clusterBed
--rwxr-xr-x root/root 39 2012-11-04 11:33 ./usr/bin/windowBed
--rwxr-xr-x root/root 41 2012-11-04 11:33 ./usr/bin/subtractBed
--rwxr-xr-x root/root 36 2012-11-04 11:33 ./usr/bin/mapBed
--rwxr-xr-x root/root 36 2012-11-04 11:33 ./usr/bin/tagBam
--rwxr-xr-x root/root 38 2012-11-04 11:33 ./usr/bin/flankBed
--rwxr-xr-x root/root 41 2012-11-04 11:33 ./usr/bin/bamToBed
--rwxr-xr-x root/root 43 2012-11-04 11:33 ./usr/bin/complementBed
--rwxr-xr-x root/root 42 2012-11-04 11:33 ./usr/bin/genomeCoverageBed
--rwxr-xr-x root/root 40 2012-11-04 11:33 ./usr/bin/getOverlap
--rwxr-xr-x root/root 43 2012-11-04 11:33 ./usr/bin/bedpeToBam
--rwxr-xr-x root/root 1394828 2012-11-04 11:33 ./usr/bin/bedtools
--rwxr-xr-x root/root 42 2012-11-04 11:33 ./usr/bin/maskFastaFromBed
--rwxr-xr-x root/root 41 2012-11-04 11:33 ./usr/bin/fastaFromBed
--rwxr-xr-x root/root 42 2012-11-04 11:33 ./usr/bin/unionBedGraphs
--rwxr-xr-x root/root 42 2012-11-04 11:33 ./usr/bin/pairToBed
--rwxr-xr-x root/root 41 2012-11-04 11:33 ./usr/bin/bedToBam
--rwxr-xr-x root/root 44 2012-11-04 11:33 ./usr/bin/bed12ToBed6
--rwxr-xr-x root/root 39 2012-11-04 11:33 ./usr/bin/expandCols
--rwxr-xr-x root/root 43 2012-11-04 11:33 ./usr/bin/bamToFastq
--rwxr-xr-x root/root 44 2012-11-04 11:33 ./usr/bin/windowMaker
--rwxr-xr-x root/root 38 2012-11-04 11:33 ./usr/bin/mergeBed
--rwxr-xr-x root/root 36 2012-11-04 11:33 ./usr/bin/bedToIgv
--rwxr-xr-x root/root 43 2012-11-04 11:33 ./usr/bin/pairToPair
--rwxr-xr-x root/root 43 2012-11-04 11:33 ./usr/bin/multiIntersectBed
--rwxr-xr-x root/root 41 2012-11-04 11:33 ./usr/bin/annotateBed
--rwxr-xr-x root/root 40 2012-11-04 11:33 ./usr/bin/shuffleBed
--rwxr-xr-x root/root 36 2012-11-04 11:33 ./usr/bin/nucBed
--rwxr-xr-x root/root 40 2012-11-04 11:33 ./usr/bin/closestBed
--rwxr-xr-x root/root 41 2012-11-04 11:33 ./usr/bin/multiBamCov
--rwxr-xr-x root/root 42 2012-11-04 11:33 ./usr/bin/intersectBed
--rwxr-xr-x root/root 37 2012-11-04 11:33 ./usr/bin/sortBed
--rwxr-xr-x root/root 37 2012-11-04 11:33 ./usr/bin/slopBed
--rwxr-xr-x root/root 39 2012-11-04 11:33 ./usr/bin/randomBed
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./usr/share/
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./usr/share/bedtools/
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root 856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root 565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root 1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
--rwxr-xr-x root/root 585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./usr/share/bedtools/test/
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.bam.bai
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root 156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
--rw-r--r-- root/root 142 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.sam
--rw-r--r-- root/root 171 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.sam
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root 988 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/test-coverage.sh
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_nomatch.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/cluster/
--rw-r--r-- root/root 1455 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/test-cluster.sh
--rw-r--r-- root/root 264 2012-11-03 17:11 ./usr/share/bedtools/test/cluster/in.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/slop/
--rw-r--r-- root/root 41 2012-11-03 17:11 ./usr/share/bedtools/test/slop/a.bed
--rw-r--r-- root/root 3603 2012-11-03 17:11 ./usr/share/bedtools/test/slop/test-slop.sh
--rw-r--r-- root/root 10 2012-11-03 17:11 ./usr/share/bedtools/test/slop/tiny.genome
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/genomecov/
--rw-r--r-- root/root 156 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/one_block.sam
--rw-r--r-- root/root 3402 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/test-genomecov.sh
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/two_blocks.sam
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match.bed
--rw-r--r-- root/root 142 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/sam-w-del.sam
--rw-r--r-- root/root 171 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks.sam
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_match_1bp.bed
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/genomecov/three_blocks_nomatch.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root 167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
--rw-r--r-- root/root 3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root 176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root 72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root 227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
--rw-r--r-- root/root 186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
--rw-r--r-- root/root 147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root 2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/subtract/
--rw-r--r-- root/root 2532 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/test-subtract.sh
--rw-r--r-- root/root 36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/a.bed
--rw-r--r-- root/root 36 2012-11-03 17:11 ./usr/share/bedtools/test/subtract/b.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root 1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root 46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root 52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root 825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
--rw-r--r-- root/root 38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root 77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/multicov/
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.bam.bai
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.sam
--rw-r--r-- root/root 72 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/multicov.bed
--rw-r--r-- root/root 167 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/two_blocks.sam
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/one_block.bam.bai
--rw-r--r-- root/root 3836 2012-11-03 17:11 ./usr/share/bedtools/test/multicov/test-multicov.sh
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root 41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
--rw-r--r-- root/root 3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root 10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/getfasta/
--rw-r--r-- root/root 16 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa.fai
--rw-r--r-- root/root 117 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/blocks.bed
--rw-r--r-- root/root 0 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.bed
--rw-r--r-- root/root 1193 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/test-getfasta.sh
--rw-r--r-- root/root 61 2012-11-03 17:11 ./usr/share/bedtools/test/getfasta/t.fa
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/intersect/
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/one_block.sam
--rw-r--r-- root/root 10172 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/test-intersect.sh
--rw-r--r-- root/root 38 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/a.bed
--rw-r--r-- root/root 167 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/two_blocks.sam
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/c.bed
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match.bed
--rw-r--r-- root/root 176 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks.sam
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_match_1bp.bed
--rw-r--r-- root/root 76 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/b.bed
--rw-r--r-- root/root 255 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/mapped_and_unmapped.sam
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/intersect/three_blocks_nomatch.bed
--rw-r--r-- root/root 1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/merge/
--rw-r--r-- root/root 57 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.names.bed
--rw-r--r-- root/root 46 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.bed
--rw-r--r-- root/root 147 2012-11-03 17:11 ./usr/share/bedtools/test/merge/a.full.bed
--rw-r--r-- root/root 3642 2012-11-03 17:11 ./usr/share/bedtools/test/merge/test-merge.sh
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root 1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
--rw-r--r-- root/root 52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/groupBy/
--rw-r--r-- root/root 885 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/test-groupby.sh
--rw-r--r-- root/root 250 2012-11-03 17:11 ./usr/share/bedtools/test/groupBy/values3.header.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/closest/
--rw-r--r-- root/root 35 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.names.bed
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/a.bed
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.bed
--rw-r--r-- root/root 2126 2012-11-03 17:11 ./usr/share/bedtools/test/closest/test-closest.sh
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b-one-bp-closer.bed
--rw-r--r-- root/root 36 2012-11-03 17:11 ./usr/share/bedtools/test/closest/b.names.bed
-drwxr-xr-x root/root 0 2012-11-04 11:31 ./usr/share/bedtools/test/general/
--rw-r--r-- root/root 1950 2012-11-03 17:11 ./usr/share/bedtools/test/general/test-general.sh
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./usr/share/doc/bedtools/
--rw-r--r-- root/root 11640 2012-11-03 17:11 ./usr/share/doc/bedtools/changelog.gz
--rw-r--r-- root/root 1089 2012-11-04 08:59 ./usr/share/doc/bedtools/changelog.Debian.gz
--rw-r--r-- root/root 5395 2012-11-04 05:11 ./usr/share/doc/bedtools/copyright
--rw-r--r-- root/root 1505 2012-11-03 17:11 ./usr/share/doc/bedtools/README.rst
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./etc/
-drwxr-xr-x root/root 0 2012-11-04 11:33 ./etc/bash_completion.d/
--rw-r--r-- root/root 638 2012-11-04 08:54 ./etc/bash_completion.d/bedtools
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-s390-sbuild-83c05a5d-30f1-4614-b61d-2ef7f9680845/build/buildd-bedtools_2.17.0-1-s390-Hwm_nv
-Not cleaning session: cloned chroot in use
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: s390
-Build-Space: 93040
-Build-Time: 131
-Distribution: sid
-Install-Time: 16
-Job: bedtools_2.17.0-1
-Package: bedtools
-Package-Time: 162
-Source-Version: 2.17.0-1
-Space: 93040
-Status: successful
-Version: 2.17.0-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1133
-Build needed 00:02:42, 93040k disc space
-Signature with key 'E7C67939' requested:
-From buildd at zemlinsky.debian.org Sun Nov 04 11:36:33 2012
-Return-path: <buildd at zemlinsky.debian.org>
-Received: from merikanto.debian.org ([2001:858:2:2:216:35ff:fec4:a49a])
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-Date: Sun, 4 Nov 2012 11:36:31 +0000
-From: buildd on zemlinsky <buildd at zemlinsky.debian.org>
-To: phil+buildd at philkern.de,logs at buildd.debian.org
-Subject: Log for successful build of bedtools_2.17.0-1 on s390x (dist=sid)
-Key-Id: 6A3F7E2B
-Delivered-To: logs at buildd.debian.org
-
-sbuild (Debian sbuild) 0.61.0 (23 Feb 2011) on zemlinsky.debian.org
-
-╔══════════════════════════════════════════════════════════════════════════════╗
-║ bedtools 2.17.0-1 (s390x) 04 Nov 2012 11:32 ║
-╚══════════════════════════════════════════════════════════════════════════════╝
-
-Package: bedtools
-Version: 2.17.0-1
-Source Version: 2.17.0-1
-Architecture: s390x
-Hit http://ftp-stud.hs-esslingen.de unstable InRelease
-Hit http://ftp-stud.hs-esslingen.de unstable/main Sources
-Hit http://ftp-stud.hs-esslingen.de unstable/contrib Sources
-Get:1 http://ftp-stud.hs-esslingen.de unstable/non-free Sources [101 kB]
-Hit http://ftp-stud.hs-esslingen.de unstable/main s390x Packages
-Hit http://ftp-stud.hs-esslingen.de unstable/contrib s390x Packages
-Hit http://incoming.debian.org unstable InRelease
-Ign http://incoming.debian.org InRelease
-Hit http://incoming.debian.org unstable/main Sources
-Hit http://incoming.debian.org unstable/contrib Sources
-Get:2 http://incoming.debian.org unstable/non-free Sources [101 kB]
-Hit http://incoming.debian.org unstable/main s390x Packages
-Hit http://incoming.debian.org unstable/contrib s390x Packages
-Get:3 http://incoming.debian.org Release.gpg [836 B]
-Get:4 http://incoming.debian.org Release [1141 B]
-Get:5 http://incoming.debian.org Sources [16.2 kB]
-Get:6 http://incoming.debian.org Packages [140 kB]
-Fetched 361 kB in 1s (192 kB/s)
-Reading package lists...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Fetch source files │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Check APT
-─────────
-
-Checking available source versions...
-
-Download source files with APT
-──────────────────────────────
-
-Reading package lists...
-Building dependency tree...
-Reading state information...
-NOTICE: 'bedtools' packaging is maintained in the 'Git' version control system at:
-git://git.debian.org/debian-med/bedtools.git
-Need to get 1216 kB of source archives.
-Get:1 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (dsc) [1951 B]
-Get:2 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (tar) [1209 kB]
-Get:3 http://incoming.debian.org/buildd-unstable/ bedtools 2.17.0-1 (diff) [5663 B]
-Fetched 1216 kB in 1s (657 kB/s)
-Download complete and in download only mode
-
-Check arch
-──────────
-
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install core build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: build-essential, fakeroot
-Checking for already installed dependencies...
-build-essential: already installed (11.5+b1)
-fakeroot: already installed (1.18.4-2)
-Checking for dependency conflicts...
-Installing positive dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Checking correctness of dependencies...
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Install bedtools build dependencies (internal resolver) │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 9), quilt, python, zlib1g-dev
-Checking for already installed dependencies...
-libc6-dev: already installed (2.13-35)
-gcc: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-g++: already installed (4:4.6.3-7 >= 4:4.4.3 is satisfied)
-make: already installed (3.81-8.2)
-dpkg-dev: already installed (1.16.8 >= 1.13.5 is satisfied)
-cdbs: missing
-debhelper: missing
-Using default version 9.20120909
-quilt: missing
-python: missing
-zlib1g-dev: missing
-Checking for dependency conflicts...
-Installing positive dependencies: cdbs debhelper quilt python zlib1g-dev
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following extra packages will be installed:
- bsdmainutils diffstat file gettext gettext-base groff-base html2text
- intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5 libgettextpo0
- libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1 libsqlite3-0
- libssl1.0.0 libunistring0 libxml2 man-db mime-support po-debconf
- python-minimal python2.7 python2.7-minimal
-Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
- www-browser libmail-box-perl python-doc python-tk python2.7-doc
- binfmt-support procmail graphviz default-mta mail-transport-agent
-Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- libgpm2 xml-core libmail-sendmail-perl
-The following NEW packages will be installed:
- bsdmainutils cdbs debhelper diffstat file gettext gettext-base groff-base
- html2text intltool-debian libasprintf0c2 libcroco3 libexpat1 libffi5
- libgettextpo0 libglib2.0-0 libmagic1 libncursesw5 libpcre3 libpipeline1
- libsqlite3-0 libssl1.0.0 libunistring0 libxml2 man-db mime-support
- po-debconf python python-minimal python2.7 python2.7-minimal quilt
- zlib1g-dev
-0 upgraded, 33 newly installed, 0 to remove and 44 not upgraded.
-Need to get 17.2 MB of archives.
-After this operation, 50.3 MB of additional disk space will be used.
-Get:1 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libncursesw5 s390x 5.9-10 [144 kB]
-Get:2 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpipeline1 s390x 1.2.2-1 [41.0 kB]
-Get:3 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libssl1.0.0 s390x 1.0.1c-4 [1259 kB]
-Get:4 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libasprintf0c2 s390x 0.18.1.1-9 [26.8 kB]
-Get:5 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libmagic1 s390x 5.11-2 [200 kB]
-Get:6 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libpcre3 s390x 1:8.31-1 [259 kB]
-Get:7 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libsqlite3-0 s390x 3.7.14.1-1 [468 kB]
-Get:8 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libxml2 s390x 2.8.0+dfsg1-6 [901 kB]
-Get:9 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libffi5 s390x 3.0.10-3+b1 [26.2 kB]
-Get:10 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libglib2.0-0 s390x 2.33.12+really2.32.4-3 [1798 kB]
-Get:11 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libcroco3 s390x 0.6.6-1 [129 kB]
-Get:12 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libexpat1 s390x 2.1.0-1 [144 kB]
-Get:13 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libunistring0 s390x 0.9.3-5+b1 [442 kB]
-Get:14 http://ftp-stud.hs-esslingen.de/debian/ unstable/main libgettextpo0 s390x 0.18.1.1-9 [158 kB]
-Get:15 http://ftp-stud.hs-esslingen.de/debian/ unstable/main bsdmainutils s390x 9.0.3 [215 kB]
-Get:16 http://ftp-stud.hs-esslingen.de/debian/ unstable/main groff-base s390x 1.21-9 [1187 kB]
-Get:17 http://ftp-stud.hs-esslingen.de/debian/ unstable/main man-db s390x 2.6.3-1 [1071 kB]
-Get:18 http://ftp-stud.hs-esslingen.de/debian/ unstable/main file s390x 5.11-2 [51.9 kB]
-Get:19 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext-base s390x 0.18.1.1-9 [156 kB]
-Get:20 http://ftp-stud.hs-esslingen.de/debian/ unstable/main mime-support all 3.52-2 [35.2 kB]
-Get:21 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python2.7-minimal s390x 2.7.3-5 [1747 kB]
-Get:22 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python2.7 s390x 2.7.3-5 [2702 kB]
-Get:23 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python-minimal all 2.7.3-3 [42.5 kB]
-Get:24 http://ftp-stud.hs-esslingen.de/debian/ unstable/main python all 2.7.3-3 [179 kB]
-Get:25 http://ftp-stud.hs-esslingen.de/debian/ unstable/main cdbs all 0.4.118 [80.0 kB]
-Get:26 http://ftp-stud.hs-esslingen.de/debian/ unstable/main html2text s390x 1.3.2a-15+b1 [111 kB]
-Get:27 http://ftp-stud.hs-esslingen.de/debian/ unstable/main gettext s390x 0.18.1.1-9 [2037 kB]
-Get:28 http://ftp-stud.hs-esslingen.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
-Get:29 http://ftp-stud.hs-esslingen.de/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
-Get:30 http://ftp-stud.hs-esslingen.de/debian/ unstable/main debhelper all 9.20120909 [705 kB]
-Get:31 http://ftp-stud.hs-esslingen.de/debian/ unstable/main diffstat s390x 1.55-3 [30.5 kB]
-Get:32 http://ftp-stud.hs-esslingen.de/debian/ unstable/main quilt all 0.60-2 [377 kB]
-Get:33 http://ftp-stud.hs-esslingen.de/debian/ unstable/main zlib1g-dev s390x 1:1.2.7.dfsg-13 [219 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 17.2 MB in 2s (7351 kB/s)
-Selecting previously unselected package libncursesw5:s390x.
-(Reading database ... 10810 files and directories currently installed.)
-Unpacking libncursesw5:s390x (from .../libncursesw5_5.9-10_s390x.deb) ...
-Selecting previously unselected package libpipeline1:s390x.
-Unpacking libpipeline1:s390x (from .../libpipeline1_1.2.2-1_s390x.deb) ...
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-Unpacking libssl1.0.0:s390x (from .../libssl1.0.0_1.0.1c-4_s390x.deb) ...
-Selecting previously unselected package libasprintf0c2:s390x.
-Unpacking libasprintf0c2:s390x (from .../libasprintf0c2_0.18.1.1-9_s390x.deb) ...
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-Unpacking libmagic1:s390x (from .../libmagic1_5.11-2_s390x.deb) ...
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-Unpacking libpcre3:s390x (from .../libpcre3_1%3a8.31-1_s390x.deb) ...
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-Unpacking libsqlite3-0:s390x (from .../libsqlite3-0_3.7.14.1-1_s390x.deb) ...
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-Unpacking libffi5:s390x (from .../libffi5_3.0.10-3+b1_s390x.deb) ...
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-Unpacking libglib2.0-0:s390x (from .../libglib2.0-0_2.33.12+really2.32.4-3_s390x.deb) ...
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-Unpacking libcroco3:s390x (from .../libcroco3_0.6.6-1_s390x.deb) ...
-Selecting previously unselected package libexpat1:s390x.
-Unpacking libexpat1:s390x (from .../libexpat1_2.1.0-1_s390x.deb) ...
-Selecting previously unselected package libunistring0:s390x.
-Unpacking libunistring0:s390x (from .../libunistring0_0.9.3-5+b1_s390x.deb) ...
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-Unpacking bsdmainutils (from .../bsdmainutils_9.0.3_s390x.deb) ...
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-Unpacking zlib1g-dev:s390x (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_s390x.deb) ...
-Setting up libncursesw5:s390x (5.9-10) ...
-Setting up libpipeline1:s390x (1.2.2-1) ...
-Setting up libssl1.0.0:s390x (1.0.1c-4) ...
-Setting up libasprintf0c2:s390x (0.18.1.1-9) ...
-Setting up libmagic1:s390x (5.11-2) ...
-Setting up libpcre3:s390x (1:8.31-1) ...
-Setting up libsqlite3-0:s390x (3.7.14.1-1) ...
-Setting up libxml2:s390x (2.8.0+dfsg1-6) ...
-Setting up libffi5:s390x (3.0.10-3+b1) ...
-Setting up libglib2.0-0:s390x (2.33.12+really2.32.4-3) ...
-No schema files found: doing nothing.
-Setting up libcroco3:s390x (0.6.6-1) ...
-Setting up libexpat1:s390x (2.1.0-1) ...
-Setting up libunistring0:s390x (0.9.3-5+b1) ...
-Setting up libgettextpo0:s390x (0.18.1.1-9) ...
-Setting up bsdmainutils (9.0.3) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
-Setting up groff-base (1.21-9) ...
-Setting up man-db (2.6.3-1) ...
-Building database of manual pages ...
-Setting up file (5.11-2) ...
-Setting up gettext-base (0.18.1.1-9) ...
-Setting up mime-support (3.52-2) ...
-update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode
-Setting up python2.7-minimal (2.7.3-5) ...
-Setting up python2.7 (2.7.3-5) ...
-Setting up python-minimal (2.7.3-3) ...
-Setting up python (2.7.3-3) ...
-Setting up cdbs (0.4.118) ...
-Setting up html2text (1.3.2a-15+b1) ...
-Setting up gettext (0.18.1.1-9) ...
-Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu2) ...
-Setting up debhelper (9.20120909) ...
-Setting up diffstat (1.55-3) ...
-Setting up quilt (0.60-2) ...
-Setting up zlib1g-dev:s390x (1:1.2.7.dfsg-13) ...
-Removing negative dependencies:
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 44 not upgraded.
-Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-s390x s390x (s390x)
-Toolchain package versions: binutils_2.22-7.1 dpkg-dev_1.16.8 g++-4.6_4.6.3-9 gcc-4.6_4.6.3-9 libc6-dev_2.13-35 libstdc++6_4.7.1-7 libstdc++6-4.6-dev_4.6.3-9 linux-libc-dev_3.2.23-1
-Package versions: apt_0.9.7.4 base-files_6.11 base-passwd_3.5.26 bash_4.2-5 binutils_2.22-7.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5.1 build-essential_11.5+b1 bzip2_1.0.6-4 cdbs_0.4.118 coreutils_8.13-3.2 cpp_4:4.6.3-7 cpp-4.6_4.6.3-9 dash_0.5.7-3 debconf_1.5.46 debconf-i18n_1.5.46 debfoster_2.7-1.2 debhelper_9.20120909 debian-archive-keyring_2012.4 debianutils_4.3.3 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.8 dpkg-dev_1.16.8 e2fslibs_1.42.5-1 e2fsprogs_1.42.5-1 fakeroot_1.18.4-2 file_ [...]
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-Unpack source
-─────────────
-
-gpgv: keyblock resource `/home/buildd/.gnupg/trustedkeys.gpg': file open error
-gpgv: Signature made Sun Nov 4 09:07:58 2012 UTC using RSA key ID 2295D502
-gpgv: Can't check signature: public key not found
-dpkg-source: warning: failed to verify signature on ./bedtools_2.17.0-1.dsc
-dpkg-source: info: extracting bedtools in bedtools-2.17.0
-dpkg-source: info: unpacking bedtools_2.17.0.orig.tar.gz
-dpkg-source: info: unpacking bedtools_2.17.0-1.debian.tar.gz
-dpkg-source: info: applying gzstream.h.patch
-
-Check disc space
-────────────────
-
-
-dpkg-buildpackage
-─────────────────
-
-dpkg-buildpackage: source package bedtools
-dpkg-buildpackage: source version 2.17.0-1
- dpkg-source --before-build bedtools-2.17.0
-dpkg-buildpackage: host architecture s390x
- fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro" -k clean
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
- * Cleaning-up BamTools API
- * Cleaning up.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-dh_clean
- rm -f debian/bedtools.substvars
- rm -f debian/bedtools.*.debhelper
- rm -rf debian/bedtools/
- rm -f debian/*.debhelper.log
- rm -f debian/files
- find . \( \( -type f -a \
- \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
- -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
- -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
- -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
- \) -exec rm -f {} \; \) -o \
- \( -type d -a -name autom4te.cache -prune -exec rm -rf {} \; \) \)
- rm -f *-stamp
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-if [ -d "." ]; then \
- cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null pop -a -R || test $? = 2 ; \
- fi
-Removing patch gzstream.h.patch
-Restoring src/utils/gzstream/gzstream.C
-
-No patches applied
-rm -rf ./.pc
-rm -f debian/stamp-patch*
- debian/rules build-arch
-test -x debian/rules
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-/usr/bin/make -f debian/rules reverse-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-make[1]: Nothing to be done for `reverse-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-cd . && QUILT_PATCHES=/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
-Applying patch gzstream.h.patch
-patching file src/utils/gzstream/gzstream.C
-
-Now at patch gzstream.h.patch
-touch debian/stamp-patched
-/usr/bin/make -f debian/rules update-config
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-make[1]: Nothing to be done for `update-config'.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-/usr/bin/make -C . CFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CXXFLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall" CPPFLAGS="-D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro"
-make[1]: Entering directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-Building BEDTools:
-=========================================================
-DETECTED_VERSION = v2.17.0
-CURRENT_VERSION =
-Updating version file.
- * Creating BamTools API
-- Building in src/utils/bedFile
- * compiling bedFile.cpp
-- Building in src/utils/version
- * compiling version.cpp
-- Building in src/utils/bedGraphFile
- * compiling bedGraphFile.cpp
-- Building in src/utils/chromsweep
- * compiling chromsweep.cpp
-- Building in src/utils/gzstream
-g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wall -c -o ../../../obj//gzstream.o gzstream.C -I.
-- Building in src/utils/fileType
- * compiling fileType.cpp
-- Building in src/utils/bedFilePE
- * compiling bedFilePE.cpp
-- Building in src/utils/sequenceUtilities
- * compiling sequenceUtils.cpp
-- Building in src/utils/tabFile
- * compiling tabFile.cpp
-- Building in src/utils/BamTools
- * compiling BamAlignment.cpp
- * compiling BamMultiReader.cpp
- * compiling BamReader.cpp
- * compiling BamWriter.cpp
- * compiling SamHeader.cpp
- * compiling SamProgram.cpp
- * compiling SamProgramChain.cpp
- * compiling SamReadGroup.cpp
- * compiling SamReadGroupDictionary.cpp
- * compiling SamSequence.cpp
- * compiling SamSequenceDictionary.cpp
- * compiling BamHeader_p.cpp
- * compiling BamMultiReader_p.cpp
- * compiling BamRandomAccessController_p.cpp
- * compiling BamReader_p.cpp
- * compiling BamWriter_p.cpp
- * compiling BamIndexFactory_p.cpp
- * compiling BamStandardIndex_p.cpp
- * compiling BamToolsIndex_p.cpp
- * compiling BamDeviceFactory_p.cpp
- * compiling BamFile_p.cpp
- * compiling BamFtp_p.cpp
- * compiling BamHttp_p.cpp
-src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendRequest(size_t)':
-src/api/internal/io/BamHttp_p.cpp:396:66: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
- * compiling BamPipe_p.cpp
- * compiling BgzfStream_p.cpp
- * compiling ByteArray_p.cpp
- * compiling HostAddress_p.cpp
- * compiling HostInfo_p.cpp
- * compiling HttpHeader_p.cpp
- * compiling ILocalIODevice_p.cpp
- * compiling RollingBuffer_p.cpp
- * compiling TcpSocketEngine_p.cpp
- * compiling TcpSocketEngine_unix_p.cpp
- * compiling TcpSocket_p.cpp
-src/api/internal/io/TcpSocket_p.cpp: In member function 'std::string BamTools::Internal::TcpSocket::ReadLine(int64_t)':
-src/api/internal/io/TcpSocket_p.cpp:336:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
- * compiling SamFormatParser_p.cpp
- * compiling SamFormatPrinter_p.cpp
- * compiling SamHeaderValidator_p.cpp
- * compiling BamException_p.cpp
- * linking lib/libbamtools.a
-ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api [...]
-ranlib lib/libbamtools.a
-- Building in src/utils/BamTools-Ancillary
- * compiling BamAncillary.cpp
- * compiling BamAncillary.cpp
-- Building in src/utils/BlockedIntervals
- * compiling BlockedIntervals.cpp
- * compiling BlockedIntervals.cpp
-- Building in src/utils/Fasta
- * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
- * compiling Fasta.cpp
-Fasta.cpp: In member function 'void FastaIndexEntry::clear()':
-Fasta.cpp:28:14: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:31:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
-Fasta.cpp:32:17: warning: converting to non-pointer type 'int' from NULL [-Wconversion-null]
- * compiling split.cpp
- * compiling split.cpp
-- Building in src/utils/VectorOps
- * compiling VectorOps.cpp
-- Building in src/utils/genomeFile
- * compiling genomeFile.cpp
-genomeFile.cpp: In member function 'void GenomeFile::loadGenomeFileIntoMap()':
-genomeFile.cpp:60:26: warning: variable 'c2' set but not used [-Wunused-but-set-variable]
-- Building in src/annotateBed
- * compiling annotateMain.cpp
-annotateMain.cpp: In function 'int annotate_main(int, char**)':
-annotateMain.cpp:39:10: warning: variable 'haveTitles' set but not used [-Wunused-but-set-variable]
- * compiling annotateBed.cpp
-- Building in src/bamToBed
- * compiling bamToBed.cpp
-bamToBed.cpp: In function 'int bamtobed_main(int, char**)':
-bamToBed.cpp:85:10: warning: variable 'useAlignmentScore' set but not used [-Wunused-but-set-variable]
-- Building in src/bamToFastq
- * compiling bamToFastqMain.cpp
-bamToFastqMain.cpp: In function 'int bamtofastq_main(int, char**)':
-bamToFastqMain.cpp:38:10: warning: variable 'haveFastq2' set but not used [-Wunused-but-set-variable]
- * compiling bamToFastq.cpp
-- Building in src/bedToBam
- * compiling bedToBam.cpp
-bedToBam.cpp: In function 'int bedtobam_main(int, char**)':
-bedToBam.cpp:60:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
-- Building in src/bedpeToBam
- * compiling bedpeToBam.cpp
-bedpeToBam.cpp: In function 'int bedpetobam_main(int, char**)':
-bedpeToBam.cpp:61:10: warning: variable 'haveMapQual' set but not used [-Wunused-but-set-variable]
-- Building in src/bedToIgv
- * compiling bedToIgv.cpp
-- Building in src/bed12ToBed6
- * compiling bed12ToBed6.cpp
-- Building in src/closestBed
- * compiling closestMain.cpp
- * compiling closestBed.cpp
-- Building in src/clusterBed
- * compiling clusterMain.cpp
-clusterMain.cpp: In function 'int cluster_main(int, char**)':
-clusterMain.cpp:38:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
- * compiling clusterBed.cpp
-- Building in src/complementBed
- * compiling complementMain.cpp
- * compiling complementBed.cpp
-- Building in src/coverageBed
- * compiling coverageMain.cpp
- * compiling coverageBed.cpp
-- Building in src/expand
- * compiling expand.cpp
-- Building in src/fastaFromBed
- * compiling fastaFromBedMain.cpp
- * compiling fastaFromBed.cpp
-- Building in src/flankBed
- * compiling flankBedMain.cpp
- * compiling flankBed.cpp
-- Building in src/genomeCoverageBed
- * compiling genomeCoverageMain.cpp
- * compiling genomeCoverageBed.cpp
-- Building in src/getOverlap
- * compiling getOverlap.cpp
-getOverlap.cpp: In function 'int getoverlap_main(int, char**)':
-getOverlap.cpp:44:10: warning: variable 'haveColumns' set but not used [-Wunused-but-set-variable]
-- Building in src/groupBy
- * compiling groupBy.cpp
-groupBy.cpp: In function 'int groupby_main(int, char**)':
-groupBy.cpp:82:10: warning: variable 'haveOps' set but not used [-Wunused-but-set-variable]
-- Building in src/intersectBed
- * compiling intersectMain.cpp
- * compiling intersectBed.cpp
-- Building in src/jaccard
- * compiling jaccardMain.cpp
- * compiling jaccard.cpp
-- Building in src/linksBed
- * compiling linksMain.cpp
- * compiling linksBed.cpp
-- Building in src/maskFastaFromBed
- * compiling maskFastaFromBedMain.cpp
- * compiling maskFastaFromBed.cpp
-- Building in src/mapBed
- * compiling mapMain.cpp
-mapMain.cpp: In function 'int map_main(int, char**)':
-mapMain.cpp:44:10: warning: variable 'haveColumn' set but not used [-Wunused-but-set-variable]
-mapMain.cpp:45:10: warning: variable 'haveOperation' set but not used [-Wunused-but-set-variable]
- * compiling mapBed.cpp
-- Building in src/mergeBed
- * compiling mergeMain.cpp
-mergeMain.cpp: In function 'int merge_main(int, char**)':
-mergeMain.cpp:40:10: warning: variable 'haveMaxDistance' set but not used [-Wunused-but-set-variable]
- * compiling mergeBed.cpp
-- Building in src/multiBamCov
- * compiling multiBamCovMain.cpp
-multiBamCovMain.cpp: In function 'int multibamcov_main(int, char**)':
-multiBamCovMain.cpp:38:10: warning: variable 'haveBed' set but not used [-Wunused-but-set-variable]
-multiBamCovMain.cpp:39:10: warning: variable 'haveBams' set but not used [-Wunused-but-set-variable]
-multiBamCovMain.cpp:47:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling multiBamCov.cpp
-- Building in src/multiIntersectBed
- * compiling multiIntersectBedMain.cpp
-multiIntersectBedMain.cpp: In function 'int multiintersect_main(int, char**)':
-multiIntersectBedMain.cpp:45:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
-multiIntersectBedMain.cpp:47:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
-multiIntersectBedMain.cpp:48:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
- * compiling multiIntersectBed.cpp
-- Building in src/nucBed
- * compiling nucBedMain.cpp
- * compiling nucBed.cpp
-- Building in src/pairToBed
- * compiling pairToBedMain.cpp
-pairToBedMain.cpp: In function 'int pairtobed_main(int, char**)':
-pairToBedMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling pairToBed.cpp
-pairToBed.cpp: In member function 'void BedIntersectPE::FindSpanningOverlaps(const BEDPE&, std::vector<BED>&, const string&)':
-pairToBed.cpp:257:12: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
-pairToBed.cpp: In member function 'bool BedIntersectPE::FindOneOrMoreSpanningOverlaps(const BEDPE&, const string&)':
-pairToBed.cpp:310:9: warning: variable 'spanLength' set but not used [-Wunused-but-set-variable]
-- Building in src/pairToPair
- * compiling pairToPairMain.cpp
-pairToPairMain.cpp: In function 'int pairtopair_main(int, char**)':
-pairToPairMain.cpp:44:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling pairToPair.cpp
-pairToPair.cpp: In member function 'void PairToPair::FindOverlaps(const BEDPE&)':
-pairToPair.cpp:112:14: warning: variable 'found1' set but not used [-Wunused-but-set-variable]
-pairToPair.cpp:113:14: warning: variable 'found2' set but not used [-Wunused-but-set-variable]
-- Building in src/randomBed
- * compiling randomBedMain.cpp
- * compiling randomBed.cpp
-- Building in src/shuffleBed
- * compiling shuffleBedMain.cpp
- * compiling shuffleBed.cpp
-- Building in src/slopBed
- * compiling slopBedMain.cpp
- * compiling slopBed.cpp
-- Building in src/sortBed
- * compiling sortMain.cpp
- * compiling sortBed.cpp
-- Building in src/subtractBed
- * compiling subtractMain.cpp
-subtractMain.cpp: In function 'int subtract_main(int, char**)':
-subtractMain.cpp:43:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling subtractBed.cpp
-- Building in src/tagBam
- * compiling tagBamMain.cpp
-tagBamMain.cpp: In function 'int tagbam_main(int, char**)':
-tagBamMain.cpp:38:10: warning: variable 'haveFraction' set but not used [-Wunused-but-set-variable]
- * compiling tagBam.cpp
-- Building in src/unionBedGraphs
- * compiling unionBedGraphsMain.cpp
-unionBedGraphsMain.cpp: In function 'int unionbedgraphs_main(int, char**)':
-unionBedGraphsMain.cpp:46:10: warning: variable 'haveFiles' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:48:10: warning: variable 'haveGenome' set but not used [-Wunused-but-set-variable]
-unionBedGraphsMain.cpp:49:10: warning: variable 'haveFiller' set but not used [-Wunused-but-set-variable]
- * compiling unionBedGraphs.cpp
-- Building in src/windowBed
- * compiling windowMain.cpp
- * compiling windowBed.cpp
-- Building in src/windowMaker
- * compiling windowMakerMain.cpp
- * compiling windowMaker.cpp
-- Building main bedtools binary.
-done.
-- Creating executables for old CLI.
-done.
-make[1]: Leaving directory `/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
- fakeroot debian/rules binary-arch
-test -x debian/rules
-dh_testroot
-dh_prep
- rm -f debian/bedtools.substvars
- rm -f debian/bedtools.*.debhelper
- rm -rf debian/bedtools/
-dh_installdirs -A
- install -d debian/bedtools
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_DH_BUILDDEB_ARGS is a deprecated variable
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/bedtools.substvars
-dh_installdirs -pbedtools
-dh_installdocs -pbedtools
- install -g 0 -o 0 -d debian/bedtools/usr/share/doc/bedtools
- cp -a README.rst debian/bedtools/usr/share/doc/bedtools
- chown -R 0:0 debian/bedtools/usr/share/doc
- chmod -R go=rX debian/bedtools/usr/share/doc
- chmod -R u\+rw debian/bedtools/usr/share/doc
- install -g 0 -o 0 -m 644 -p debian/copyright debian/bedtools/usr/share/doc/bedtools/copyright
-dh_installexamples -pbedtools
-dh_installman -pbedtools
-dh_installinfo -pbedtools
-dh_installmenu -pbedtools
-dh_installcron -pbedtools
-dh_installinit -pbedtools
-dh_installdebconf -pbedtools
- install -o 0 -g 0 -d debian/bedtools/DEBIAN
-dh_installemacsen -pbedtools
-dh_installcatalogs -pbedtools
- grep -s -v '^misc:Depends=' debian/bedtools.substvars > debian/bedtools.substvars.new || true
- mv debian/bedtools.substvars.new debian/bedtools.substvars
-dh_installpam -pbedtools
-dh_installlogrotate -pbedtools
-dh_installlogcheck -pbedtools
-dh_installchangelogs -pbedtools RELEASE_HISTORY
- install -o 0 -g 0 -p -m644 debian/changelog debian/bedtools/usr/share/doc/bedtools/changelog.Debian
- install -o 0 -g 0 -p -m644 RELEASE_HISTORY debian/bedtools/usr/share/doc/bedtools/changelog
-dh_installudev -pbedtools
-dh_lintian -pbedtools
-dh_bugfiles -pbedtools
-dh_install -pbedtools
- install -d debian/bedtools/usr/bin
- cp -a ./bin/annotateBed debian/bedtools/usr/bin/
- cp -a ./bin/bamToBed debian/bedtools/usr/bin/
- cp -a ./bin/bamToFastq debian/bedtools/usr/bin/
- cp -a ./bin/bed12ToBed6 debian/bedtools/usr/bin/
- cp -a ./bin/bedpeToBam debian/bedtools/usr/bin/
- cp -a ./bin/bedToBam debian/bedtools/usr/bin/
- cp -a ./bin/bedToIgv debian/bedtools/usr/bin/
- cp -a ./bin/bedtools debian/bedtools/usr/bin/
- cp -a ./bin/closestBed debian/bedtools/usr/bin/
- cp -a ./bin/clusterBed debian/bedtools/usr/bin/
- cp -a ./bin/complementBed debian/bedtools/usr/bin/
- cp -a ./bin/coverageBed debian/bedtools/usr/bin/
- cp -a ./bin/expandCols debian/bedtools/usr/bin/
- cp -a ./bin/fastaFromBed debian/bedtools/usr/bin/
- cp -a ./bin/flankBed debian/bedtools/usr/bin/
- cp -a ./bin/genomeCoverageBed debian/bedtools/usr/bin/
- cp -a ./bin/getOverlap debian/bedtools/usr/bin/
- cp -a ./bin/groupBy debian/bedtools/usr/bin/
- cp -a ./bin/intersectBed debian/bedtools/usr/bin/
- cp -a ./bin/linksBed debian/bedtools/usr/bin/
- cp -a ./bin/mapBed debian/bedtools/usr/bin/
- cp -a ./bin/maskFastaFromBed debian/bedtools/usr/bin/
- cp -a ./bin/mergeBed debian/bedtools/usr/bin/
- cp -a ./bin/multiBamCov debian/bedtools/usr/bin/
- cp -a ./bin/multiIntersectBed debian/bedtools/usr/bin/
- cp -a ./bin/nucBed debian/bedtools/usr/bin/
- cp -a ./bin/pairToBed debian/bedtools/usr/bin/
- cp -a ./bin/pairToPair debian/bedtools/usr/bin/
- cp -a ./bin/randomBed debian/bedtools/usr/bin/
- cp -a ./bin/shuffleBed debian/bedtools/usr/bin/
- cp -a ./bin/slopBed debian/bedtools/usr/bin/
- cp -a ./bin/sortBed debian/bedtools/usr/bin/
- cp -a ./bin/subtractBed debian/bedtools/usr/bin/
- cp -a ./bin/tagBam debian/bedtools/usr/bin/
- cp -a ./bin/unionBedGraphs debian/bedtools/usr/bin/
- cp -a ./bin/windowBed debian/bedtools/usr/bin/
- cp -a ./bin/windowMaker debian/bedtools/usr/bin/
- install -d debian/bedtools/usr/share/bedtools
- cp -a ./genomes debian/bedtools/usr/share/bedtools/
- install -d debian/bedtools/usr/share/bedtools/test
- cp -a ./test/bamtobed debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/bed12tobed6 debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/closest debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/cluster debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/coverage debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/expand debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/flank debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/general debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/genomecov debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/getfasta debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/groupBy debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/intersect debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/jaccard debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/map debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/merge debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/multicov debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/slop debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/subtract debian/bedtools/usr/share/bedtools/test/
- cp -a ./test/test.sh debian/bedtools/usr/share/bedtools/test/
- install -d debian/bedtools/etc/bash_completion.d
- cp -a ./debian/bash_completion/bedtools debian/bedtools/etc/bash_completion.d/
-dh_link -pbedtools
-dh_installmime -pbedtools
-dh_installgsettings -pbedtools
-dh_strip -pbedtools
- strip --remove-section=.comment --remove-section=.note debian/bedtools/usr/bin/bedtools
-dh_compress -pbedtools -X test
- cd debian/bedtools
- chmod a-x usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
- gzip -9nf usr/share/doc/bedtools/changelog.Debian usr/share/doc/bedtools/changelog
- cd '/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0'
-dh_fixperms -pbedtools
- find debian/bedtools -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
- find debian/bedtools ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/bedtools/usr/share/doc -type f ! -regex 'debian/bedtools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 755
- find debian/bedtools/usr/share/man debian/bedtools/usr/man/ debian/bedtools/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools -perm -5 -type f \( -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 644
- find debian/bedtools/usr/lib/perl5 debian/bedtools/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
- find debian/bedtools/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
- find debian/bedtools/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
-dh_makeshlibs -pbedtools
- rm -f debian/bedtools/DEBIAN/shlibs
-rm /build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ/bedtools-2.17.0/debian/bedtools/usr/bin/groupBy # distributed in the filo package.
-dh_installdeb -pbedtools
- find debian/bedtools/etc -type f -printf '/etc/%P
-' >> debian/bedtools/DEBIAN/conffiles
- chmod 644 debian/bedtools/DEBIAN/conffiles
-dh_perl -pbedtools
-dh_shlibdeps -pbedtools
- dpkg-shlibdeps -Tdebian/bedtools.substvars debian/bedtools/usr/bin/bedtools
-dh_gencontrol -pbedtools
- echo misc:Depends= >> debian/bedtools.substvars
- dpkg-gencontrol -ldebian/changelog -Tdebian/bedtools.substvars -Pdebian/bedtools
- chmod 644 debian/bedtools/DEBIAN/control
- chown 0:0 debian/bedtools/DEBIAN/control
-dh_md5sums -pbedtools
- (cd debian/bedtools >/dev/null ; find . -type f ! -path "./etc/bash_completion.d/bedtools" ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
- chmod 644 debian/bedtools/DEBIAN/md5sums
- chown 0:0 debian/bedtools/DEBIAN/md5sums
-dh_builddeb -pbedtools -- -Z xz
- dpkg-deb -Z xz --build debian/bedtools ..
-dpkg-deb: building package `bedtools' in `../bedtools_2.17.0-1_s390x.deb'.
- dpkg-genchanges -B -ms390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org> >../bedtools_2.17.0-1_s390x.changes
-dpkg-genchanges: arch-specific upload - not including arch-independent packages
-dpkg-genchanges: binary-only upload - not including any source code
- dpkg-source --after-build bedtools-2.17.0
-dpkg-buildpackage: binary only upload (no source included)
-────────────────────────────────────────────────────────────────────────────────
-Build finished at 20121104-1136
-
-bedtools_2.17.0-1_s390x.changes:
-Format: 1.8
-Date: Sun, 04 Nov 2012 17:59:41 +0900
-Source: bedtools
-Binary: bedtools
-Architecture: s390x
-Version: 2.17.0-1
-Distribution: sid
-Urgency: low
-Maintainer: s390/s390x Build Daemon (zemlinsky) <buildd_s390x-zemlinsky at buildd.debian.org>
-Changed-By: Charles Plessy <plessy at debian.org>
-Description:
- bedtools - suite of utilities for comparing genomic features
-Changes:
- bedtools (2.17.0-1) unstable; urgency=low
- .
- bb9012e Imported Upstream version 2.16.2.
- 9006b23 Imported Upstream version 2.17.0.
- 9112569 Documented BEDTools license as a whole.
- 325689c Removed Pre-Depends: dpkg (>= 1.15.6).
- a781b14 Conforms with Policy 3.9.4.
- 84b1167 Use Debhelper 9.
- 0bf572d Distribute the test suite.
- 422cd34 Bash completion for BEDTools.
-Checksums-Sha1:
- ad9c92ce690adb264c4f552c32926fa231b8543e 458538 bedtools_2.17.0-1_s390x.deb
-Checksums-Sha256:
- 9e879db814882792a2047e2f87908db888ee3d04a12f077ce251d5f23a3a00a8 458538 bedtools_2.17.0-1_s390x.deb
-Files:
- 5cb3cb78aa7b4ff5dc8140a8188817da 458538 science optional bedtools_2.17.0-1_s390x.deb
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Package contents │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-
-bedtools_2.17.0-1_s390x.deb
-───────────────────────────
-
- new debian package, version 2.0.
- size 458538 bytes: control archive= 4106 bytes.
- 32 bytes, 1 lines conffiles
- 834 bytes, 18 lines control
- 9605 bytes, 132 lines md5sums
- Package: bedtools
- Version: 2.17.0-1
- Architecture: s390x
- Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 1777
- Depends: libc6 (>= 2.13), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.6), zlib1g (>= 1:1.1.4)
- Suggests: filo
- Section: science
- Priority: optional
- Homepage: http://code.google.com/p/bedtools/
- Description: suite of utilities for comparing genomic features
- The BEDTools utilities allow one to address common genomics tasks such as
- finding feature overlaps and computing coverage. The utilities are largely
- based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
- BEDTools, one can develop sophisticated pipelines that answer complicated
- research questions by streaming several BEDTools together.
- .
- The groupBy utility is distribued in the filo package.
-
-drwxr-xr-x root/root 0 2012-11-04 11:36 ./
-drwxr-xr-x root/root 0 2012-11-04 11:36 ./usr/
-drwxr-xr-x root/root 0 2012-11-04 11:36 ./usr/share/
-drwxr-xr-x root/root 0 2012-11-04 11:36 ./usr/share/bedtools/
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/genomes/
--rwxr-xr-x root/root 585 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm9.genome
--rwxr-xr-x root/root 856 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg18.genome
--rwxr-xr-x root/root 565 2012-11-03 17:11 ./usr/share/bedtools/genomes/mouse.mm8.genome
--rwxr-xr-x root/root 1972 2012-11-03 17:11 ./usr/share/bedtools/genomes/human.hg19.genome
-drwxr-xr-x root/root 0 2012-11-04 11:36 ./usr/share/bedtools/test/
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/test/bed12tobed6/
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/bed6.bed
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/three_blocks.bed
--rw-r--r-- root/root 1919 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/test-bed12tobed6.sh
--rw-r--r-- root/root 46 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/one_blocks.bed
--rw-r--r-- root/root 52 2012-11-03 17:11 ./usr/share/bedtools/test/bed12tobed6/two_blocks.bed
--rw-r--r-- root/root 1243 2012-11-03 17:11 ./usr/share/bedtools/test/test.sh
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/test/map/
--rw-r--r-- root/root 147 2012-11-03 17:11 ./usr/share/bedtools/test/map/values.bed
--rw-r--r-- root/root 72 2012-11-03 17:11 ./usr/share/bedtools/test/map/ivls.bed
--rw-r--r-- root/root 2753 2012-11-03 17:11 ./usr/share/bedtools/test/map/test-map.sh
--rw-r--r-- root/root 227 2012-11-03 17:11 ./usr/share/bedtools/test/map/values3.bed
--rw-r--r-- root/root 186 2012-11-03 17:11 ./usr/share/bedtools/test/map/values2.bed
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/test/jaccard/
--rw-r--r-- root/root 18 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/c.bed
--rw-r--r-- root/root 11 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/d.bed
--rw-r--r-- root/root 77 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/b.bed
--rw-r--r-- root/root 38 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/a.bed
--rw-r--r-- root/root 825 2012-11-03 17:11 ./usr/share/bedtools/test/jaccard/test-jaccard.sh
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/test/expand/
--rw-r--r-- root/root 1278 2012-11-03 17:11 ./usr/share/bedtools/test/expand/test-expand.sh
--rw-r--r-- root/root 52 2012-11-03 17:11 ./usr/share/bedtools/test/expand/expand.txt
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/test/bamtobed/
--rw-r--r-- root/root 167 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/two_blocks.sam
--rw-r--r-- root/root 3304 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/test-bamtobed.sh
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/one_block.sam
--rw-r--r-- root/root 176 2012-11-03 17:11 ./usr/share/bedtools/test/bamtobed/three_blocks.sam
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/test/flank/
--rw-r--r-- root/root 3859 2012-11-03 17:11 ./usr/share/bedtools/test/flank/test-flank.sh
--rw-r--r-- root/root 10 2012-11-03 17:11 ./usr/share/bedtools/test/flank/tiny.genome
--rw-r--r-- root/root 41 2012-11-03 17:11 ./usr/share/bedtools/test/flank/a.bed
-drwxr-xr-x root/root 0 2012-11-04 11:32 ./usr/share/bedtools/test/coverage/
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks.bam.bai
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/sam-w-del.bam.bai
--rw-r--r-- root/root 162 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/two_blocks.sam
--rw-r--r-- root/root 96 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.bam.bai
--rw-r--r-- root/root 63 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match_1bp.bed
--rw-r--r-- root/root 156 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/one_block.sam
--rw-r--r-- root/root 60 2012-11-03 17:11 ./usr/share/bedtools/test/coverage/three_blocks_match.bed
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Finished │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Built successfully
-────────────────────────────────────────────────────────────────────────────────
-
-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Post Build │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Purging /var/lib/schroot/mount/sid-s390x-sbuild-e7105a7b-c4bd-42e9-b131-51e513ead6f2/build/buildd-bedtools_2.17.0-1-s390x-a1TXHZ
-Not cleaning session: cloned chroot in use
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-┌──────────────────────────────────────────────────────────────────────────────┐
-│ Summary │
-└──────────────────────────────────────────────────────────────────────────────┘
-
-Architecture: s390x
-Build-Space: 129412
-Build-Time: 238
-Distribution: sid
-Install-Time: 21
-Job: bedtools_2.17.0-1
-Package: bedtools
-Package-Time: 269
-Source-Version: 2.17.0-1
-Space: 129412
-Status: successful
-Version: 2.17.0-1
-────────────────────────────────────────────────────────────────────────────────
-Finished at 20121104-1136
-Build needed 00:04:29, 129412k disc space
-Signature with key '6A3F7E2B' requested:
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