[med-svn] r18013 - in trunk/packages/metastudent/tags: . 1.0.11-2/debian
Laszlo Kajan
lkajan at moszumanska.debian.org
Sun Sep 14 09:59:16 UTC 2014
Author: lkajan
Date: 2014-09-14 09:59:15 +0000 (Sun, 14 Sep 2014)
New Revision: 18013
Added:
trunk/packages/metastudent/tags/1.0.11-2/
trunk/packages/metastudent/tags/1.0.11-2/debian/changelog
trunk/packages/metastudent/tags/1.0.11-2/debian/control
trunk/packages/metastudent/tags/1.0.11-2/debian/copyright
trunk/packages/metastudent/tags/1.0.11-2/debian/rules
Removed:
trunk/packages/metastudent/tags/1.0.11-2/debian/changelog
trunk/packages/metastudent/tags/1.0.11-2/debian/control
trunk/packages/metastudent/tags/1.0.11-2/debian/copyright
trunk/packages/metastudent/tags/1.0.11-2/debian/rules
Log:
[svn-buildpackage] Tagging metastudent 1.0.11-2
Deleted: trunk/packages/metastudent/tags/1.0.11-2/debian/changelog
===================================================================
--- trunk/packages/metastudent/trunk/debian/changelog 2014-09-13 19:43:07 UTC (rev 18007)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/changelog 2014-09-14 09:59:15 UTC (rev 18013)
@@ -1,31 +0,0 @@
-metastudent (1.0.11-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp <hampt at rostlab.org> Fri, 13 Dec 2013 09:21:18 +0200
-
-metastudent (1.0.10-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp <hampt at rostlab.org> Sat, 08 Jun 2013 17:41:08 +0200
-
-metastudent (1.0.9-1) unstable; urgency=low
-
- * New upstream release.
-
- -- Tobias Hamp <hampt at rostlab.org> Wed, 05 Jun 2013 16:41:08 +0200
-
-metastudent (1.0.8-2) unstable; urgency=low
-
- * This version depends on data packaged as metastudent-data.
-
- -- Laszlo Kajan <lkajan at rostlab.org> Wed, 08 May 2013 17:23:51 +0200
-
-metastudent (1.0.8-1) unstable; urgency=low
-
- * Initial release (Closes: #705537)
- [Laszlo Kajan <lkajan at rostlab.org>]
- * Added BMC Bioinfo paper to d/upstream.
-
- -- Tobias Hamp <hampt at rostlab.org> Mon, 15 Apr 2013 12:08:13 +0100
Copied: trunk/packages/metastudent/tags/1.0.11-2/debian/changelog (from rev 18008, trunk/packages/metastudent/trunk/debian/changelog)
===================================================================
--- trunk/packages/metastudent/tags/1.0.11-2/debian/changelog (rev 0)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/changelog 2014-09-14 09:59:15 UTC (rev 18013)
@@ -0,0 +1,38 @@
+metastudent (1.0.11-2) unstable; urgency=medium
+
+ * Fixed VCS URL.
+ * Fixed python2 dependency handling.
+
+ -- Laszlo Kajan <lkajan at debian.org> Sun, 14 Sep 2014 11:08:05 +0200
+
+metastudent (1.0.11-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp <hampt at rostlab.org> Fri, 13 Dec 2013 09:21:18 +0200
+
+metastudent (1.0.10-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp <hampt at rostlab.org> Sat, 08 Jun 2013 17:41:08 +0200
+
+metastudent (1.0.9-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Tobias Hamp <hampt at rostlab.org> Wed, 05 Jun 2013 16:41:08 +0200
+
+metastudent (1.0.8-2) unstable; urgency=low
+
+ * This version depends on data packaged as metastudent-data.
+
+ -- Laszlo Kajan <lkajan at rostlab.org> Wed, 08 May 2013 17:23:51 +0200
+
+metastudent (1.0.8-1) unstable; urgency=low
+
+ * Initial release (Closes: #705537)
+ [Laszlo Kajan <lkajan at rostlab.org>]
+ * Added BMC Bioinfo paper to d/upstream.
+
+ -- Tobias Hamp <hampt at rostlab.org> Mon, 15 Apr 2013 12:08:13 +0100
Deleted: trunk/packages/metastudent/tags/1.0.11-2/debian/control
===================================================================
--- trunk/packages/metastudent/trunk/debian/control 2014-09-13 19:43:07 UTC (rev 18007)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/control 2014-09-14 09:59:15 UTC (rev 18013)
@@ -1,39 +0,0 @@
-Source: metastudent
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Tobias Hamp <hampt at rostlab.org>,
- Laszlo Kajan <lkajan at debian.org>
-Section: science
-Priority: optional
-Build-Depends-Indep: debhelper (>=9~),
- python-support,
- python,
- javahelper,
- default-jdk
-Standards-Version: 3.9.5
-Vcs-Browser: http://anonscm.debian.org/wsvn/debian-med/trunk/packages/metastudent/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent/trunk/
-Homepage: https://rostlab.org/owiki/index.php/Metastudent
-X-Python-Version: >= 2.6
-
-Package: metastudent
-Architecture: all
-Depends: ${misc:Depends},
- ${perl:Depends},
- python,
- blast2,
- default-jre,
- libgo-perl,
- libipc-run-perl,
- libgraphviz-perl,
- libfile-chdir-perl,
- metastudent-data,
- metastudent-data-2
-Description: predictor of Gene Ontology terms from protein sequence
- Often, only the sequence of a protein is known, but
- not its functions. Metastudent will try to predict
- missing functional annotations through homology searches (BLAST).
- .
- All predicted functions correspond to Gene Ontology (GO)
- terms from the Molecular Function Ontology (MFO) and the Biological Process
- Ontology (BPO) and are associated with a reliability score.
-
Copied: trunk/packages/metastudent/tags/1.0.11-2/debian/control (from rev 18008, trunk/packages/metastudent/trunk/debian/control)
===================================================================
--- trunk/packages/metastudent/tags/1.0.11-2/debian/control (rev 0)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/control 2014-09-14 09:59:15 UTC (rev 18013)
@@ -0,0 +1,39 @@
+Source: metastudent
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Tobias Hamp <hampt at rostlab.org>,
+ Laszlo Kajan <lkajan at debian.org>
+Section: science
+Priority: optional
+Build-Depends-Indep: debhelper (>=9~),
+ python,
+ javahelper,
+ default-jdk
+Standards-Version: 3.9.5
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/metastudent/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/metastudent/trunk/
+Homepage: https://rostlab.org/owiki/index.php/Metastudent
+X-Python-Version: >= 2.6
+
+Package: metastudent
+Architecture: all
+Depends: ${misc:Depends},
+ ${perl:Depends},
+ ${python:Depends},
+ python,
+ blast2,
+ default-jre,
+ libgo-perl,
+ libipc-run-perl,
+ libgraphviz-perl,
+ libfile-chdir-perl,
+ metastudent-data,
+ metastudent-data-2
+Description: predictor of Gene Ontology terms from protein sequence
+ Often, only the sequence of a protein is known, but
+ not its functions. Metastudent will try to predict
+ missing functional annotations through homology searches (BLAST).
+ .
+ All predicted functions correspond to Gene Ontology (GO)
+ terms from the Molecular Function Ontology (MFO) and the Biological Process
+ Ontology (BPO) and are associated with a reliability score.
+
Deleted: trunk/packages/metastudent/tags/1.0.11-2/debian/copyright
===================================================================
--- trunk/packages/metastudent/trunk/debian/copyright 2014-09-13 19:43:07 UTC (rev 18007)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/copyright 2014-09-14 09:59:15 UTC (rev 18013)
@@ -1,68 +0,0 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: metastudent
-Upstream-Contact: Tobias Hamp <hampt at rostlab.org>
-Source: ftp://rostlab.org/metastudent/
-
-Files: metastudentPkg/lib/groupA/GO_Parser/src/ParseGONew.java
-Copyright: 2010, Ariane Böhm
-License: GPL-2+
-
-Files: metastudentPkg/lib/groupA/Validation/src/Validator.java
-Copyright: 2010, Ariane Böhm
- 2010, Yannick Mahlich
-License: GPL-2+
-
-Files: metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/GoNode.java
-Copyright: 2010, Thomas Hopf
-License: GPL-2+
-
-Files: metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java metastudentPkg/lib/groupB/pp2/tools/RMethods.java metastudentPkg/lib/groupB/src/pp2/prediction/knn/DetermineDistribution.java
-Copyright: 2010, Stefanie Kaufmann
-License: GPL-2+
-
-Files: metastudentPkg/lib/groupB/pp2/go/Relations.java metastudentPkg/lib/groupB/pp2/go/DAG.java metastudentPkg/lib/groupB/src/pp2/go/Relations.java metastudentPkg/lib/groupB/src/pp2/go/DAG.java
-Copyright: 2010, Mark Heron
-License: GPL-2+
-
-Files: metastudentPkg/lib/groupC/treehandler.pl metastudentPkg/lib/groupC/treehandler_new.pl
-Copyright: 2010, Peter Hoenigschmid
-License: GPL-2+
-
-Files: metastudentPkg/lib/groupC/Report.*
-Copyright: 2010, Dominik Achten
- 2010, Michael Kiening
- 2010, Maximilian Hecht
- 2010, Peter Hönigschmid
- 2010, Florian Auer
- 2010, Manfred Roos
-License: GPL-2+
-
-Files: metastudent metastudentdata
-Copyright: 2012-2013 Tobias Hamp <hampt at rostlab.org>
-License: GPL-2+
-
-Files: debian/*
-Copyright: 2011-2013, Tobias Hamp <hampt at rostlab.org>
- 2013, Laszlo Kajan <lkajan at debian.org>
-License: GPL-2+
-
-Files: *
-Copyright: 2010-2013, Tobias Hamp <hampt at rostlab.org>
-License: GPL-2+
-
-License: GPL-2+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this package; if not, see .
- .
- On Debian systems, the complete text of the GNU General Public
- License version 2 can be found in `/usr/share/common-licenses/GPL-2'
Copied: trunk/packages/metastudent/tags/1.0.11-2/debian/copyright (from rev 18011, trunk/packages/metastudent/trunk/debian/copyright)
===================================================================
--- trunk/packages/metastudent/tags/1.0.11-2/debian/copyright (rev 0)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/copyright 2014-09-14 09:59:15 UTC (rev 18013)
@@ -0,0 +1,68 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: metastudent
+Upstream-Contact: Tobias Hamp <hampt at rostlab.org>
+Source: ftp://rostlab.org/metastudent/
+
+Files: metastudentPkg/lib/groupA/GO_Parser/src/ParseGONew.java
+Copyright: 2010, Ariane Böhm
+License: GPL-2+
+
+Files: metastudentPkg/lib/groupA/Validation/src/Validator.java
+Copyright: 2010, Ariane Böhm
+ 2010, Yannick Mahlich
+License: GPL-2+
+
+Files: metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastResultList.java metastudentPkg/lib/groupB/pp2/prediction/knn/DAGNode.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNPredictor.java metastudentPkg/lib/groupB/pp2/prediction/knn/KNNKernel.java metastudentPkg/lib/groupB/pp2/prediction/knn/PredictionTarget.java metastudentPkg/lib/groupB/pp2/prediction/knn/BlastHit.java metastudentPkg/lib/groupB/pp2/prediction/knn/kNearestNeighbor.java metastudentPkg/lib/groupB/pp2/prediction/knn/GoNode.java
+Copyright: 2010, Thomas Hopf
+License: GPL-2+
+
+Files: metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java metastudentPkg/lib/groupB/pp2/tools/RMethods.java metastudentPkg/lib/groupB/pp2/prediction/knn/DetermineDistribution.java
+Copyright: 2010, Stefanie Kaufmann
+License: GPL-2+
+
+Files: metastudentPkg/lib/groupB/pp2/go/Relations.java metastudentPkg/lib/groupB/pp2/go/DAG.java metastudentPkg/lib/groupB/pp2/go/Relations.java metastudentPkg/lib/groupB/pp2/go/DAG.java
+Copyright: 2010, Mark Heron
+License: GPL-2+
+
+Files: metastudentPkg/lib/groupC/treehandler.pl metastudentPkg/lib/groupC/treehandler_new.pl
+Copyright: 2010, Peter Hoenigschmid
+License: GPL-2+
+
+Files: metastudentPkg/lib/groupC/Report.*
+Copyright: 2010, Dominik Achten
+ 2010, Michael Kiening
+ 2010, Maximilian Hecht
+ 2010, Peter Hönigschmid
+ 2010, Florian Auer
+ 2010, Manfred Roos
+License: GPL-2+
+
+Files: metastudent
+Copyright: 2012-2013 Tobias Hamp <hampt at rostlab.org>
+License: GPL-2+
+
+Files: debian/*
+Copyright: 2011-2013, Tobias Hamp <hampt at rostlab.org>
+ 2013, Laszlo Kajan <lkajan at debian.org>
+License: GPL-2+
+
+Files: *
+Copyright: 2010-2013, Tobias Hamp <hampt at rostlab.org>
+License: GPL-2+
+
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, see .
+ .
+ On Debian systems, the complete text of the GNU General Public
+ License version 2 can be found in `/usr/share/common-licenses/GPL-2'
Deleted: trunk/packages/metastudent/tags/1.0.11-2/debian/rules
===================================================================
--- trunk/packages/metastudent/trunk/debian/rules 2014-09-13 19:43:07 UTC (rev 18007)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/rules 2014-09-14 09:59:15 UTC (rev 18013)
@@ -1,26 +0,0 @@
-#!/usr/bin/make -f
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-
-JAVA_HOME=/usr/lib/jvm/default-java
-
-%:
- dh $@ --with javahelper
-
-override_dh_auto_clean:
- dh_auto_clean
- rm -f metastudent.1
-
-override_dh_auto_install:
- dh_auto_install
- find debian/metastudent -regex ".*/knn_weighted\|.*/CafaWrapper1\.pl\|.*/CafaWrapper2\.pl\|.*/CafaWrapper3\.pl\|.*/CafaWrapper3_new\.pl\|.*/exercise3\.pl\|.*/treehandler\.pl\|.*/validate\.pl" -exec chmod +x {} \;
- mv *.jar $(CURDIR)/debian/metastudent/usr/share/metastudent/
-
-# lkajan 20140106:
-# The jars in d/metastudent.jlibs are for use by this package only, and should not end up in /usr/share/java.
-override_jh_installlibs:
- exit 0;
-
-get-orig-source:
- mkdir -p ../tarballs
- uscan --verbose --force-download --destdir=../tarballs
Copied: trunk/packages/metastudent/tags/1.0.11-2/debian/rules (from rev 18008, trunk/packages/metastudent/trunk/debian/rules)
===================================================================
--- trunk/packages/metastudent/tags/1.0.11-2/debian/rules (rev 0)
+++ trunk/packages/metastudent/tags/1.0.11-2/debian/rules 2014-09-14 09:59:15 UTC (rev 18013)
@@ -0,0 +1,26 @@
+#!/usr/bin/make -f
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+JAVA_HOME=/usr/lib/jvm/default-java
+
+%:
+ dh $@ --with javahelper --with python2
+
+override_dh_auto_clean:
+ dh_auto_clean
+ rm -f metastudent.1
+
+override_dh_auto_install:
+ dh_auto_install
+ find debian/metastudent -regex ".*/knn_weighted\|.*/CafaWrapper1\.pl\|.*/CafaWrapper2\.pl\|.*/CafaWrapper3\.pl\|.*/CafaWrapper3_new\.pl\|.*/exercise3\.pl\|.*/treehandler\.pl\|.*/validate\.pl" -exec chmod +x {} \;
+ mv *.jar $(CURDIR)/debian/metastudent/usr/share/metastudent/
+
+# lkajan 20140106:
+# The jars in d/metastudent.jlibs are for use by this package only, and should not end up in /usr/share/java.
+override_jh_installlibs:
+ exit 0;
+
+get-orig-source:
+ mkdir -p ../tarballs
+ uscan --verbose --force-download --destdir=../tarballs
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