[med-svn] r18635 - trunk/packages/rna-star/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-01-30 06:42:08 +0000 (Fri, 30 Jan 2015)
New Revision: 18635

Added:
   trunk/packages/rna-star/trunk/debian/STAR.1
   trunk/packages/rna-star/trunk/debian/manpages
Modified:
   trunk/packages/rna-star/trunk/debian/docs
   trunk/packages/rna-star/trunk/debian/rules
Log:
Care for documentation


Added: trunk/packages/rna-star/trunk/debian/STAR.1
===================================================================
--- trunk/packages/rna-star/trunk/debian/STAR.1	                        (rev 0)
+++ trunk/packages/rna-star/trunk/debian/STAR.1	2015-01-30 06:42:08 UTC (rev 18635)
@@ -0,0 +1,26 @@
+.TH STAR "1" "January 2015" "STAR 2.4.0i" "User Commands"
+.SH NAME
+STAR \- ultrafast universal RNA-seq aligner
+.SH DESCRIPTION
+.PP
+Spliced Transcripts Alignment to a Reference (STAR) software based on a
+previously undescribed RNA-seq alignment algorithm that uses sequential
+maximum mappable seed search in uncompressed suffix arrays followed by
+seed clustering and stitching procedure. STAR outperforms other aligners
+by a factor of >50 in mapping speed, aligning to the human genome 550
+million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
+while at the same time improving alignment sensitivity and precision. In
+addition to unbiased de novo detection of canonical junctions, STAR can
+discover non-canonical splices and chimeric (fusion) transcripts, and is
+also capable of mapping full-length RNA sequences. Using Roche 454
+sequencing of reverse transcription polymerase chain reaction amplicons,
+the authors experimentally validated 1960 novel intergenic splice
+junctions with an 80-90% success rate, corroborating the high precision
+of the STAR mapping strategy.
+.SH SYNOPSIS
+.B STAR
+\fB--option1-name option1-value(s)--option2-name option2-value(s) ...\fR
+.SH SEE ALSO
+This manpage is only a placeholder.  You can get extensive information
+by using
+  see /usr/share/doc/rna-star/STARmanual.pdf

Modified: trunk/packages/rna-star/trunk/debian/docs
===================================================================
--- trunk/packages/rna-star/trunk/debian/docs	2015-01-30 06:22:37 UTC (rev 18634)
+++ trunk/packages/rna-star/trunk/debian/docs	2015-01-30 06:42:08 UTC (rev 18635)
@@ -1 +1,2 @@
 README
+doc/*

Added: trunk/packages/rna-star/trunk/debian/manpages
===================================================================
--- trunk/packages/rna-star/trunk/debian/manpages	                        (rev 0)
+++ trunk/packages/rna-star/trunk/debian/manpages	2015-01-30 06:42:08 UTC (rev 18635)
@@ -0,0 +1 @@
+debian/*.1

Modified: trunk/packages/rna-star/trunk/debian/rules
===================================================================
--- trunk/packages/rna-star/trunk/debian/rules	2015-01-30 06:22:37 UTC (rev 18634)
+++ trunk/packages/rna-star/trunk/debian/rules	2015-01-30 06:42:08 UTC (rev 18635)
@@ -20,5 +20,8 @@
 	cd source && $(MAKE) clean
 	rm -f source/parametersDefault.xxd
 
+override_dh_compress:
+	dh_compress --exclude=.pdf
+
 get-orig-source:
 	uscan --verbose --force-download --repack --compress xz