[med-svn] r18636 - trunk/packages/rna-star/trunk/debian

[Andreas Tille]

Author: tille
Date: 2015-01-30 06:49:18 +0000 (Fri, 30 Jan 2015)
New Revision: 18636

Added:
   trunk/packages/rna-star/trunk/debian/doc-base
Log:
docbase file


Added: trunk/packages/rna-star/trunk/debian/doc-base
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--- trunk/packages/rna-star/trunk/debian/doc-base	                        (rev 0)
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+Document: rna-star
+Title: STAR manual
+Author: Alexnder Dobin <dobin at cshl.edu>
+Abstract: ultrafast universal RNA-seq aligner
+ Spliced Transcripts Alignment to a Reference (STAR) software based on a
+ previously undescribed RNA-seq alignment algorithm that uses sequential
+ maximum mappable seed search in uncompressed suffix arrays followed by
+ seed clustering and stitching procedure. STAR outperforms other aligners
+ by a factor of >50 in mapping speed, aligning to the human genome 550
+ million 2 × 76 bp paired-end reads per hour on a modest 12-core server,
+ while at the same time improving alignment sensitivity and precision. In
+ addition to unbiased de novo detection of canonical junctions, STAR can
+ discover non-canonical splices and chimeric (fusion) transcripts, and is
+ also capable of mapping full-length RNA sequences. Using Roche 454
+ sequencing of reverse transcription polymerase chain reaction amplicons,
+ the authors experimentally validated 1960 novel intergenic splice
+ junctions with an 80-90% success rate, corroborating the high precision
+ of the STAR mapping strategy.
+Section: Science/Biology
+
+Format: pdf
+Files: /usr/share/doc/rna-star/STARmanual.pdf