Author: tille
Date: 2015-10-31 19:59:15 +0000 (Sat, 31 Oct 2015)
New Revision: 20368
Modified:
trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
Log:
Further reformatting
Modified: trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa
===================================================================
--- trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa 2015-10-31 19:01:25 UTC (rev 20367)
+++ trunk/packages/R/r-bioc-000-dependency-scheme/3.2/BioC_3.2-dependency-tree.ditaa 2015-10-31 19:59:15 UTC (rev 20368)
@@ -1,77 +1,76 @@
- +------------+
- | cummerbund |
- +------------+
- ^
- |
- +---+--+
- | gviz |
- +------+
- ^
- +-------+ |
- | edger | +------+-----+
- +-------+ | biovizbase |
- ^ +------+-----+
- | ^
- +---+---+ +------------+ +--------+ |
- | limma | | hilbertvis | | qvalue | +----------+--------+
- +-------+ +------------+ +--------+ | variantannotation |
- ^ +-------------------+
- : ^ ^
- : | |
- +------+------+ +------------+----+ +-+---------+
- |cAAA go.db | | genomicfeatures | | bsgenome |
- +-------------+ +--------------+ +-----------------+ +-----------+
- | altcdfenvs | ^ ^ ^
- +--------------+ | | |
- ^ ^ ^ | +--+-------+--+
- | | | | | rtracklayer |
- +----------------------------------+ | | | +-------------+
- | | | | ^
- | +-----------++ | +-------------+ |
- | | makecdfenv | | +-----------+ | +----------+--------+
- | +------------+ | +-------------------------------->| shortread |<-------|---------------+ genomicalignments |
- | ^ | | +-----------+ | +-------------------+
- | | | | | ^
- | | | | | |
- | | | | | +-------+------+
- | | +-------------------------+ +----------------------------------------->| rsamtools |
- | | | | | | +--------------+
-+------+-----+ +-------+--+ | +--+-----+---+ +------------+ +------+--+ ^ ^:
-| hypergraph | | affy |<-----------+ | | biostrings | | annotate | | biomart | | |:
-+------------+ +----------+ | | +------------+ +------------+ +---------+ | |:
- ^ ^ ^ ^ | | ^ ^ ^ | |:
- | | | | | | | | | | |:
- +---+---+ +----------------+ | ++--------+ | | | +--+----------+-+ +----------+----+ |:
- | graph | | preprocesscore | | | affyio | | | | | annotationdbi | | genomicranges | |:
- +-------+ +----------------+ | +---------+ | | | +---------------+ +---------------+ |:
- ^ | | | | ^ ^ ^ ^ |:
- | | | | | | | | | |:
- | +--------+------+ | | +------------------|-----------------+ | | | |:
- | | biocinstaller | | | | | | | | |:
- | +---------------+ | | | | +----------------------|---------------+ + |:
- | | | | | | | +---------+ |:
- | | | | | | | | |:
- | | | | +---+---+-+ +-+-----------++ |:
- | | | | | xvector | | genomeinfodb | |:
- | | | | +---------+ +--------------+ |:
- | | | | ^ ^ |:
- | | | | | | |:
- | +----------+ | | | +---+-----+ | |:
- | | multtest | | | | | iranges +-------------------------+ |:
- | +----------+ | | | +-------+-+ |:
- | ^ | | | ^ : |:
- | | +-+--+--+-+ | : |:
- | +--------------+ biobase | | : |:
- | +---------+ | v |:
- | ^ +--+--------+ +--------------+ |:
- +---------------------------------------------+ | +----------------->| s4vectors | | biocparallel +---------+:
- | | | +-----------+ +--------------+<---------+
- | | | ^
- | | | |
- | | | +-------------------------------------------------------+
- | | | |
- +--+--+--+---+-+ +----------+
- | biocgenerics +------------------------------------------------------------------>| snpstats |
+ +------------+
+ | cummerbund |
+ +------------+
+ ^
+ |
+ +---+--+
+ | gviz |
+ +------+
+ ^
+ +-------+ |
+ | edger | +------+-----+
+ +-------+ | biovizbase |
+ ^ +------+-----+
+ | ^
+ +---+---+ +------------+ +--------+ |
+ | limma | | hilbertvis | | qvalue | +----------+--------+
+ +-------+ +------------+ +--------+ | variantannotation |
+ ^ +-------------------+
+ : ^ ^
+ : | |
+ +------+------+ +------------+----+ +-+---------+
+ |cAAA go.db | | genomicfeatures | | bsgenome |
+ +-------------+ +--------------+ +-----------------+ +-----------+
+ | altcdfenvs | ^ ^ ^
+ +--------------+ | | |
+ ^ ^ ^ | +--+-------+--+
+ | | | | | rtracklayer |
+ +----------------------------------+ | | | +-------------+
+ | | | | ^
+ | +-----------++ | +-------------+ |
+ | | makecdfenv | | +-----------+ | +----------+--------+
+ | +------------+ | +----------------------->| shortread |<-------|---------------+ genomicalignments |
+ | ^ | | +-----------+ | +-------------------+
+ | | | | | ^
+ | | | | | |
+ | | | | | +-----------+--+
+ | | +----------------+ +---------------------------------->| rsamtools |
+ | | | | | | +--------------+
++------+-----+ +-------+--+ | +--+-----+---+ +------------+ +------+--+ ^ ^:
+| hypergraph | | affy |<-----------+ | | biostrings | | annotate | | biomart | | |:
++------------+ +----------+ | | +------------+ +------------+ +---------+ | |:
+ ^ ^ ^ ^ | | ^ ^ ^ | |:
+ | | | | | | | | | | |:
+ +---+---+ +----------------+ | ++--------+ | | | +--+----------+-+ +--------+------+ |:
+ | graph | | preprocesscore | | | affyio | | | | | annotationdbi | | genomicranges | |:
+ +-------+ +----------------+ | +---------+ | | | +---------------+ +---------------+ |:
+ ^ | | | | ^ ^ ^ ^ |:
+ | | | | | | | | | |:
+ | +--------+------+ | | +---------|-----------------+ | | | |:
+ | | biocinstaller | | | | | | | | |:
+ | +---------------+ | | | | +----------------------|--------+ | |:
+ | | | | | | | | |:
+ | | | | +---+---+-+ +-+-----------++ |:
+ | | | | | xvector | | genomeinfodb | |:
+ | | | | +---------+ +--------------+ |:
+ | | | | ^ ^ |:
+ | | | | | | |:
+ | +----------+ | | | +---+-----+ | |:
+ | | multtest | | | | | iranges +-------------------------+ |:
+ | +----------+ | | | +-------+-+ |:
+ | ^ | | | ^ : |:
+ | | +-+--+--+-+ | : |:
+ | +--------------+ biobase | | : |:
+ | +---------+ | v |v
+ | ^ +--+--------+ +---------+----+
+ | | +---------->| s4vectors | | biocparallel |
+ | | | +-----------+ +--------------+
+ | | | ^
+ | | | |
+ | | | +---------------------------------------------------+
+ | | | |
+ | +-----+--+---+-+ +----------+
+ +------------------------------------------+ biocgenerics +------------------------------------------------------------------>| snpstats |
+--------------+ +----------+