[med-svn] [circlator] 03/06: Refresh patches

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository circlator.

commit 10dd11248c080e58e185b3c6395dea63e933b961
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sat Apr 23 20:40:37 2016 -0700

    Refresh patches
---
 debian/patches/bundle-bioassemblyref.patch | 6 +++---
 debian/patches/spades-call.patch           | 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/debian/patches/bundle-bioassemblyref.patch b/debian/patches/bundle-bioassemblyref.patch
index ae133a9..bbb7392 100644
--- a/debian/patches/bundle-bioassemblyref.patch
+++ b/debian/patches/bundle-bioassemblyref.patch
@@ -14,10 +14,10 @@ Last-Update: 2016-03-15
      tests_require=['nose >= 1.3'],
      install_requires=[
 @@ -22,7 +22,6 @@
-         'pyfastaq >= 3.10.0',
+         'pyfastaq >= 3.12.1',
          'pysam >= 0.8.1, <= 0.8.3',
-         'pymummer>=0.6.1',
--        'bio_assembly_refinement>=0.5.0',
+         'pymummer>=0.7.1',
+-        'bio_assembly_refinement>=0.5.1',
      ],
      license='GPLv3',
      classifiers=[
diff --git a/debian/patches/spades-call.patch b/debian/patches/spades-call.patch
index b073a8e..665b953 100644
--- a/debian/patches/spades-call.patch
+++ b/debian/patches/spades-call.patch
@@ -7,7 +7,7 @@ Forwarded: no
 Last-Update: 2016-03-18
 --- circlator.orig/circlator/external_progs.py
 +++ circlator/circlator/external_progs.py
-@@ -13,7 +13,7 @@
+@@ -14,7 +14,7 @@
  # This means we need to explicitly run SPAdes with python2.
  class Spades(program.Program):
      def exe(self):

-- 
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