[med-svn] [circlator] 03/06: Refresh patches
Afif Elghraoui
afif at moszumanska.debian.org
Sun Apr 24 06:54:46 UTC 2016
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afif pushed a commit to branch master
in repository circlator.
commit 10dd11248c080e58e185b3c6395dea63e933b961
Author: Afif Elghraoui <afif at ghraoui.name>
Date: Sat Apr 23 20:40:37 2016 -0700
Refresh patches
---
debian/patches/bundle-bioassemblyref.patch | 6 +++---
debian/patches/spades-call.patch | 2 +-
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/debian/patches/bundle-bioassemblyref.patch b/debian/patches/bundle-bioassemblyref.patch
index ae133a9..bbb7392 100644
--- a/debian/patches/bundle-bioassemblyref.patch
+++ b/debian/patches/bundle-bioassemblyref.patch
@@ -14,10 +14,10 @@ Last-Update: 2016-03-15
tests_require=['nose >= 1.3'],
install_requires=[
@@ -22,7 +22,6 @@
- 'pyfastaq >= 3.10.0',
+ 'pyfastaq >= 3.12.1',
'pysam >= 0.8.1, <= 0.8.3',
- 'pymummer>=0.6.1',
-- 'bio_assembly_refinement>=0.5.0',
+ 'pymummer>=0.7.1',
+- 'bio_assembly_refinement>=0.5.1',
],
license='GPLv3',
classifiers=[
diff --git a/debian/patches/spades-call.patch b/debian/patches/spades-call.patch
index b073a8e..665b953 100644
--- a/debian/patches/spades-call.patch
+++ b/debian/patches/spades-call.patch
@@ -7,7 +7,7 @@ Forwarded: no
Last-Update: 2016-03-18
--- circlator.orig/circlator/external_progs.py
+++ circlator/circlator/external_progs.py
-@@ -13,7 +13,7 @@
+@@ -14,7 +14,7 @@
# This means we need to explicitly run SPAdes with python2.
class Spades(program.Program):
def exe(self):
--
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