[med-svn] [circlator] 04/06: Don't restrict pysam max version

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository circlator.

commit b0ac0690132e6db6fc02e59387cbd35db0b5e09c
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Sat Apr 23 20:41:15 2016 -0700

    Don't restrict pysam max version
---
 debian/patches/pysam-maxversion.patch | 17 +++++++++++++++++
 debian/patches/series                 |  1 +
 2 files changed, 18 insertions(+)

diff --git a/debian/patches/pysam-maxversion.patch b/debian/patches/pysam-maxversion.patch
new file mode 100644
index 0000000..a318447
--- /dev/null
+++ b/debian/patches/pysam-maxversion.patch
@@ -0,0 +1,17 @@
+Description: Don't restrict pysam max version
+ circlator presumably works with pysam 0.9.0, but blocks it
+ because pip has issues installing it.
+Author: Afif Elghraoui <afif at debian.org>
+Forwarded: not-needed
+Last-Update: 2016-04-23
+--- circlator.orig/setup.py
++++ circlator/setup.py
+@@ -20,7 +20,7 @@
+     install_requires=[
+         'openpyxl',
+         'pyfastaq >= 3.12.1',
+-        'pysam >= 0.8.1, <= 0.8.3',
++        'pysam >= 0.8.1',
+         'pymummer>=0.7.1',
+     ],
+     license='GPLv3',
diff --git a/debian/patches/series b/debian/patches/series
index 991a513..f9719e0 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 bundle-bioassemblyref.patch
 spades-call.patch
+pysam-maxversion.patch

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