[med-svn] [hyphy] 03/05: Merge tag 'upstream/2.2.7+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository hyphy.

commit 6d8af81eb59c38d3d377e9356eba612e7383f581
Merge: 8dc877e 35f6a34
Author: Andreas Tille <tille at debian.org>
Date:   Tue Aug 16 09:28:03 2016 +0200

    Merge tag 'upstream/2.2.7+dfsg'
    
    Upstream version 2.2.7+dfsg

 .travis.yml                                        |   52 +
 CMakeLists.txt                                     |   13 +-
 README.md                                          |   97 +-
 package.json                                       |   12 -
 res/TemplateBatchFiles/BUSTED.bf                   |    2 +-
 res/TemplateBatchFiles/files.lst                   |    1 +
 src/gui/HYChartWindow.cpp                          |   24 +-
 src/gui/HYModelWindow.cpp                          |    2 +-
 .../gtk/WindowClasses/HYPlatformModelWindow.cpp    |    2 +-
 src/lib/Examples/HBL/F81.bf                        |    1 -
 src/lib/Examples/HBL/HKY85.bf                      |    1 -
 src/lib/Examples/HBL/data/hiv.nuc                  |    1 -
 src/lib/Examples/Python/BasicHyPhy.py              |  112 -
 src/lib/Examples/R/BasicHyPhy.R                    |  126 -
 src/lib/LibraryModules/Python/HyPhy/__init__.py    |   78 -
 src/lib/LibraryModules/R/HyPhy.R                   | 1338 ----
 src/lib/README                                     |   53 -
 src/lib/SWIGWrappers/THyPhy_R.cpp                  | 3344 ---------
 src/lib/SWIGWrappers/THyPhy_py3.cpp                | 7440 --------------------
 src/lib/SWIGWrappers/THyPhy_python.cpp             | 7440 --------------------
 src/lib/build.sh                                   |  186 -
 src/lib/{Link => link}/THyPhy.cpp                  |    0
 src/lib/{Link => link}/THyPhy.h                    |    0
 src/lib/setup.py                                   |   97 -
 24 files changed, 148 insertions(+), 20274 deletions(-)

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