[med-svn] [seer] branch master updated (1bbef7e -> 5602aa6)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository seer.

      from  1bbef7e   Add versioned Build-Depends libarmadillo-dev
       new  df7df2f   New upstream version 1.1.2
       new  8ee9fdd   Merge tag 'upstream/1.1.2'
       new  a5e9f0d   New upstream version
       new  65ca01f   debhelper 10
       new  5db2d05   d/watch: version=4
       new  5602aa6   Upload to unstable

The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                          |     3 +-
 .travis.yml                         |    18 +
 README.md                           |    47 +-
 debian/changelog                    |     7 +-
 debian/compat                       |     2 +-
 debian/control                      |     4 +-
 debian/watch                        |     2 +-
 scripts/R_mds.pl                    |   143 +
 scripts/blast_top_hits.pl           |     2 +-
 scripts/mash2matrix.pl              |    60 +
 seer-logo.png                       |   Bin 0 -> 30410 bytes
 src/Makefile                        |     9 +
 src/filterCmdLine.cpp               |     6 +
 src/filter_seer.hpp                 |     3 +
 src/kmdsCmdLine.cpp                 |     8 +-
 src/kmdsStruct.cpp                  |     5 +-
 src/mapCmdLine.cpp                  |     6 +
 src/mapMain.cpp                     |     6 +
 src/map_back.hpp                    |     1 +
 src/seerBinaryAssoc.cpp             |     2 +-
 src/seerCmdLine.cpp                 |     7 +-
 src/seerCommon.cpp                  |     9 -
 src/seerFilter.cpp                  |    31 +-
 src/seerIO.cpp                      |     6 +-
 src/seerMain.cpp                    |     9 +
 src/seercommon.hpp                  |     4 +-
 src/significant_kmer.cpp            |    38 +-
 src/significant_kmer.hpp            |     6 +
 test/6259_5_16.fa                   | 35643 ++++++++++++++++++++++++++++++++++
 test/all_structure_new              |   Bin 75800 -> 196442 bytes
 test/assembly_locations.txt         |     1 +
 test/map_in.txt                     |     2 +
 test/run_test.pl                    |    25 +-
 test/{test1.txt => test1.e.txt}     |     4 +-
 test/test1.o.txt                    |     1 +
 test/{test1.txt => test2.e.txt}     |     4 +-
 test/{test2.txt => test2.o.txt}     |     3 -
 test/{test1.txt => test3.e.txt}     |     4 +-
 test/{test3.txt => test3.o.txt}     |     3 -
 test/test4.e.txt                    |     6 +
 test/{test4.txt => test4.o.txt}     |     3 -
 test/{test1.txt => test5.e.txt}     |     4 +-
 test/{test5.txt => test5.o.txt}     |     3 -
 test/{test1.txt => test6.e.txt}     |     4 +-
 test/{filter_in.txt => test6.o.txt} |     0
 test/test6.txt                      |   178 -
 test/test7.e.txt                    |     2 +
 test/{test7.txt => test7.o.txt}     |   308 +-
 test/test8.e.txt                    |     4 +
 test/test8.o.txt                    |     1 +
 50 files changed, 36230 insertions(+), 417 deletions(-)
 create mode 100644 .travis.yml
 create mode 100755 scripts/R_mds.pl
 create mode 100755 scripts/mash2matrix.pl
 create mode 100644 seer-logo.png
 create mode 100755 test/6259_5_16.fa
 create mode 100644 test/assembly_locations.txt
 create mode 100644 test/map_in.txt
 copy test/{test1.txt => test1.e.txt} (51%)
 create mode 100644 test/test1.o.txt
 copy test/{test1.txt => test2.e.txt} (51%)
 rename test/{test2.txt => test2.o.txt} (99%)
 copy test/{test1.txt => test3.e.txt} (51%)
 rename test/{test3.txt => test3.o.txt} (99%)
 create mode 100644 test/test4.e.txt
 rename test/{test4.txt => test4.o.txt} (94%)
 copy test/{test1.txt => test5.e.txt} (51%)
 rename test/{test5.txt => test5.o.txt} (99%)
 rename test/{test1.txt => test6.e.txt} (51%)
 copy test/{filter_in.txt => test6.o.txt} (100%)
 delete mode 100644 test/test6.txt
 create mode 100644 test/test7.e.txt
 rename test/{test7.txt => test7.o.txt} (65%)
 create mode 100644 test/test8.e.txt
 create mode 100644 test/test8.o.txt

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/seer.git