[med-svn] [seer] 02/06: Merge tag 'upstream/1.1.2'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository seer.

commit 8ee9fdd5ef248eb8f3b3ae47076660b89544c686
Merge: 1bbef7e df7df2f
Author: Andreas Tille <tille at debian.org>
Date:   Wed Dec 7 23:02:58 2016 +0100

    Merge tag 'upstream/1.1.2'
    
    Upstream version 1.1.2

 .gitignore                      |     3 +-
 .travis.yml                     |    18 +
 README.md                       |    47 +-
 scripts/R_mds.pl                |   143 +
 scripts/blast_top_hits.pl       |     2 +-
 scripts/mash2matrix.pl          |    60 +
 seer-logo.png                   |   Bin 0 -> 30410 bytes
 src/Makefile                    |     9 +
 src/filterCmdLine.cpp           |     6 +
 src/filter_seer.hpp             |     3 +
 src/kmdsCmdLine.cpp             |     8 +-
 src/kmdsStruct.cpp              |     5 +-
 src/mapCmdLine.cpp              |     6 +
 src/mapMain.cpp                 |     6 +
 src/map_back.hpp                |     1 +
 src/seerBinaryAssoc.cpp         |     2 +-
 src/seerCmdLine.cpp             |     7 +-
 src/seerCommon.cpp              |     9 -
 src/seerFilter.cpp              |    31 +-
 src/seerIO.cpp                  |     6 +-
 src/seerMain.cpp                |     9 +
 src/seercommon.hpp              |     4 +-
 src/significant_kmer.cpp        |    38 +-
 src/significant_kmer.hpp        |     6 +
 test/6259_5_16.fa               | 35643 ++++++++++++++++++++++++++++++++++++++
 test/all_structure_new          |   Bin 75800 -> 196442 bytes
 test/assembly_locations.txt     |     1 +
 test/map_in.txt                 |     2 +
 test/run_test.pl                |    25 +-
 test/{test1.txt => test1.e.txt} |     4 +-
 test/test1.o.txt                |     1 +
 test/{test1.txt => test2.e.txt} |     4 +-
 test/{test2.txt => test2.o.txt} |     3 -
 test/{test1.txt => test3.e.txt} |     4 +-
 test/{test3.txt => test3.o.txt} |     3 -
 test/test4.e.txt                |     6 +
 test/{test4.txt => test4.o.txt} |     3 -
 test/{test1.txt => test5.e.txt} |     4 +-
 test/{test5.txt => test5.o.txt} |     3 -
 test/{test1.txt => test6.e.txt} |     4 +-
 test/{test6.txt => test6.o.txt} |     3 -
 test/test7.e.txt                |     2 +
 test/{test7.txt => test7.o.txt} |   308 +-
 test/test8.e.txt                |     4 +
 test/test8.o.txt                |     1 +
 45 files changed, 36221 insertions(+), 236 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/seer.git