[med-svn] [python-cobra] branch debian/jessie-backports updated (51a5ae5 -> 8701ba9)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch debian/jessie-backports
in repository python-cobra.

      from  51a5ae5   releasing package python-cobra version 0.5.4-1~bpo8+1
      adds  2a0a196   Imported Upstream version 0.5.6
      adds  cf4c7a3   Merge tag 'upstream/0.5.6'
      adds  c9ccb36   Update packaging to accomodate change in test suite framework
      adds  0a10ae2   Work around #846045 (in pytest-benchmark) to be able to run tests
      adds  1ec0fba   d/tests/Makefile: update test script to accomodate return code change
      adds  6f42cc5   releasing package python-cobra version 0.5.6-1
       new  8701ba9   Merge tag 'debian/0.5.6-1' into debian/jessie-backports

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 .gitignore                                         |   3 +
 .travis.yml                                        |  96 ++-
 CONTRIBUTING.rst                                   |  44 +-
 appveyor.yml                                       |   5 +-
 cobra/VERSION                                      |   2 +-
 cobra/core/DictList.py                             |   2 +-
 cobra/core/Model.py                                |  17 +-
 cobra/core/Reaction.py                             |   3 +
 cobra/flux_analysis/parsimonious.py                |   4 +-
 cobra/io/__init__.py                               |  12 +-
 cobra/io/json.py                                   | 129 ++--
 cobra/test/__init__.py                             |  54 +-
 cobra/test/conftest.py                             |  48 ++
 cobra/test/design.py                               |  89 ---
 cobra/test/io_tests.py                             | 261 -------
 cobra/test/solvers.py                              | 292 --------
 cobra/test/test_design.py                          |  60 ++
 cobra/test/test_dictlist.py                        | 257 +++++++
 .../{flux_analysis.py => test_flux_analysis.py}    | 415 ++++++-----
 cobra/test/test_io.py                              | 213 ++++++
 .../test/{manipulation.py => test_manipulation.py} | 231 +++---
 cobra/test/test_model.py                           | 597 +++++++++++++++
 cobra/test/test_solvers.py                         | 266 +++++++
 cobra/test/unit_tests.py                           | 806 ---------------------
 config.sh                                          |  33 +-
 debian/changelog                                   |  10 +
 debian/control                                     |   2 +
 debian/patches/exclude-pytest-benchmark.patch      | 248 +++++++
 debian/patches/series                              |   1 +
 debian/tests/Makefile                              |   2 +-
 debian/tests/control                               |   2 +
 develop-requirements.txt                           |   1 +
 documentation_builder/conf.py                      |   2 +-
 scripts/deploy-test.sh                             |  15 -
 scripts/deploy.sh                                  |   9 +-
 tox.ini                                            |   2 +-
 36 files changed, 2254 insertions(+), 1979 deletions(-)
 create mode 100644 cobra/test/conftest.py
 delete mode 100644 cobra/test/design.py
 delete mode 100644 cobra/test/io_tests.py
 delete mode 100644 cobra/test/solvers.py
 create mode 100644 cobra/test/test_design.py
 create mode 100644 cobra/test/test_dictlist.py
 rename cobra/test/{flux_analysis.py => test_flux_analysis.py} (50%)
 create mode 100644 cobra/test/test_io.py
 rename cobra/test/{manipulation.py => test_manipulation.py} (52%)
 create mode 100644 cobra/test/test_model.py
 create mode 100644 cobra/test/test_solvers.py
 delete mode 100644 cobra/test/unit_tests.py
 create mode 100644 debian/patches/exclude-pytest-benchmark.patch
 delete mode 100755 scripts/deploy-test.sh

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