[med-svn] [andi] branch master updated (8a4160d -> 3e3fb82)

[Fabian Klötzl]

This is an automated email from the git hooks/post-receive script.

kloetzl-guest pushed a change to branch master
in repository andi.

      from  8a4160d   Finalized d/changelog
       new  a88fbdf   Imported Upstream version 0.9.6
       new  f01310b   Merge tag 'upstream/0.9.6'
       new  a31ace5   start new changelog entry
       new  e396fcf   activate unit tests (reproducibly)
       new  8ce73df   Imported Upstream version 0.9.6.1
       new  ff221d2   Merge tag 'upstream/0.9.6.1'
       new  3e3fb82   bump changelog to new version

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .clang-format               |   9 ++
 .travis.yml                 |  47 +++---
 Makefile.am                 |   6 +-
 README.md                   |   6 +-
 andi-manual.pdf             | Bin 423356 -> 425545 bytes
 configure.ac                |  17 +-
 debian/changelog            |   7 +
 debian/control              |   2 +-
 debian/rules                |   7 +
 docs/andi.1.in              |  13 +-
 docs/manual/andi-manual.tex |  17 +-
 opt/psufsort/Makefile.am    |   2 +-
 src/Makefile.am             |   7 +-
 src/andi.c                  | 326 ++++++++++++++++++++-------------------
 src/dist_hack.h             |  46 +++---
 src/esa.c                   | 368 +++++++++++++++++++++-----------------------
 src/esa.h                   |  19 ++-
 src/global.h                |  21 ++-
 src/io.c                    | 161 +++++++++----------
 src/io.h                    |  24 +--
 src/model.c                 | 255 ++++++++++++++++++++++++++++++
 src/model.h                 |  64 ++++++++
 src/process.c               | 336 ++++++++++++++++++----------------------
 src/process.h               |   6 +-
 src/sequence.c              | 203 +++++++++++-------------
 src/sequence.h              |  20 +--
 test/Makefile.am            |   6 +-
 test/test_extra.sh          |   6 +-
 test/test_fasta.cxx         |  26 +++-
 test/test_join.sh           |   6 +-
 test/test_random.sh         |  54 ++++++-
 test/test_seq.c             |   4 +-
 32 files changed, 1233 insertions(+), 858 deletions(-)
 create mode 100644 .clang-format
 create mode 100644 src/model.c
 create mode 100644 src/model.h

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/andi.git