[med-svn] [andi] 01/07: Merge tag 'upstream/0.9.6'

[Fabian Klötzl]

This is an automated email from the git hooks/post-receive script.

kloetzl-guest pushed a commit to branch master
in repository andi.

commit f01310b9ca75225a3ef17b6f7b9f878e9142dfed
Merge: 8a4160d a88fbdf
Author: Fabian Klötzl <fabian at kloetzl.info>
Date:   Fri Feb 5 12:50:47 2016 +0000

    Merge tag 'upstream/0.9.6'
    
    Upstream version 0.9.6

 .clang-format               |   9 ++
 .travis.yml                 |  47 +++---
 Makefile.am                 |   6 +-
 README.md                   |   6 +-
 andi-manual.pdf             | Bin 423356 -> 425545 bytes
 configure.ac                |  17 +-
 docs/andi.1.in              |  13 +-
 docs/manual/andi-manual.tex |  17 +-
 opt/psufsort/Makefile.am    |   2 +-
 src/Makefile.am             |   7 +-
 src/andi.c                  | 326 ++++++++++++++++++++-------------------
 src/dist_hack.h             |  46 +++---
 src/esa.c                   | 368 +++++++++++++++++++++-----------------------
 src/esa.h                   |  19 ++-
 src/global.h                |  21 ++-
 src/io.c                    | 161 +++++++++----------
 src/io.h                    |  24 +--
 src/model.c                 | 255 ++++++++++++++++++++++++++++++
 src/model.h                 |  64 ++++++++
 src/process.c               | 336 ++++++++++++++++++----------------------
 src/process.h               |   6 +-
 src/sequence.c              | 203 +++++++++++-------------
 src/sequence.h              |  20 +--
 test/Makefile.am            |   6 +-
 test/test_extra.sh          |   6 +-
 test/test_fasta.cxx         |  26 +++-
 test/test_join.sh           |   6 +-
 test/test_random.sh         |  54 ++++++-
 test/test_seq.c             |   4 +-
 29 files changed, 1218 insertions(+), 857 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/andi.git