[med-svn] [salmon] branch upstream updated (a2657b1 -> b6b142a)

[Michael Crusoe]

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misterc-guest pushed a change to branch upstream
in repository salmon.

      from  a2657b1   Imported Upstream version 0.4.2+ds1
       new  b6b142a   Imported Upstream version 0.4.2+ds1

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 include/CollapsedIterativeOptimizer.hpp.bak | 2069 ---------------------------
 src/SalmonQuantify.cpp.bak                  | 1314 -----------------
 2 files changed, 3383 deletions(-)
 delete mode 100644 include/CollapsedIterativeOptimizer.hpp.bak
 delete mode 100644 src/SalmonQuantify.cpp.bak

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