[med-svn] r21330 - trunk/packages/vsearch/trunk/debian/patches

[Andreas Tille]

Author: tille
Date: 2016-01-30 13:16:35 +0000 (Sat, 30 Jan 2016)
New Revision: 21330

Added:
   trunk/packages/vsearch/trunk/debian/patches/spelling.patch
Modified:
   trunk/packages/vsearch/trunk/debian/patches/series
Log:
Fix some spelling issues


Modified: trunk/packages/vsearch/trunk/debian/patches/series
===================================================================
--- trunk/packages/vsearch/trunk/debian/patches/series	2016-01-29 23:46:53 UTC (rev 21329)
+++ trunk/packages/vsearch/trunk/debian/patches/series	2016-01-30 13:16:35 UTC (rev 21330)
@@ -1 +1,2 @@
 sysconf_memory_sizing.patch
+spelling.patch

Added: trunk/packages/vsearch/trunk/debian/patches/spelling.patch
===================================================================
--- trunk/packages/vsearch/trunk/debian/patches/spelling.patch	                        (rev 0)
+++ trunk/packages/vsearch/trunk/debian/patches/spelling.patch	2016-01-30 13:16:35 UTC (rev 21330)
@@ -0,0 +1,44 @@
+Description: Fix some spelling issues
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Sat, 30 Jan 2016 14:02:24 +0100
+
+--- a/src/vsearch.cc
++++ b/src/vsearch.cc
+@@ -2153,7 +2153,7 @@ void cmd_shuffle()
+ void cmd_subsample()
+ {
+   if ((!opt_fastaout) && (!opt_fastqout))
+-    fatal("Specifiy output files for subsampling with --fastaout and/or --fastqout");
++    fatal("Specify output files for subsampling with --fastaout and/or --fastqout");
+ 
+   if ((opt_sample_pct > 0) == (opt_sample_size > 0))
+     fatal("Specify either --sample_pct or --sample_size, not both");
+@@ -2172,7 +2172,7 @@ void cmd_maskfasta()
+ void cmd_fastx_mask()
+ {
+   if ((!opt_fastaout) && (!opt_fastqout))
+-    fatal("Specifiy output files for masking with --fastaout and/or --fastqout");
++    fatal("Specify output files for masking with --fastaout and/or --fastqout");
+ 
+   fastx_mask();
+ }
+--- a/man/vsearch.1
++++ b/man/vsearch.1
+@@ -840,7 +840,7 @@ truncation) will be discarded (1 by defa
+ ambiguous bases (N's), as specified with the \-\-fastq_maxns will also
+ be discarded (no limit by default). Staggered reads will not be merged
+ unless the \-\-fastq_allowmergestagger option is specified. The
+-minimum length of the overlap region between the reads may be specfied
++minimum length of the overlap region between the reads may be specified
+ with the \-\-minovlen option (default 1), and the overlap region may
+ not include more mismatches than specified with the \-\-maxdiffs
+ option (no limit by default), otherwise the read pair will be
+@@ -986,7 +986,7 @@ The argument to the \-\-qmask and \-\-db
+ or dust. If the argument is none, the no masking is performed. If the
+ argument is soft the lower case symbols will be masked. Finally, if
+ the argument is dust, the sequence will be masked using the DUST
+-algorith by Tatusov and Lipman to mask low-complexity regions.
++algorithm by Tatusov and Lipman to mask low-complexity regions.
+ 
+ If the \-\-hardmask option is specified, all masked regions will be
+ converted to N's, otherwise masked regions will be indicated by lower