[med-svn] [r-bioc-limma] branch master updated (7679d3f -> 2006f21)

[Gordon Ball]

This is an automated email from the git hooks/post-receive script.

chronitis-guest pushed a change to branch master
in repository r-bioc-limma.

      from  7679d3f   New upstream: 3.28.10
       new  d85c65f   Imported Upstream version 3.28.17+dfsg
       new  836106c   Merge tag 'upstream/3.28.17+dfsg'
       new  7201df4   New upstream: 3.28.17
       new  2006f21   Refresh patches

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                                    |   9 +-
 NAMESPACE                                      |   2 +-
 R/alias2Symbol.R                               | 110 +++++++++++--------------
 R/combine.R                                    |   4 +-
 R/geneset-camera.R                             |   2 +-
 R/geneset-fry.R                                |  13 +--
 R/geneset-roast.R                              |  13 +--
 R/goana.R                                      |  53 ++++--------
 R/kegga.R                                      |   6 +-
 R/lmfit.R                                      |   5 +-
 R/norm.R                                       |   4 +-
 R/plots-fit.R                                  |  16 ++--
 build/vignette.rds                             | Bin 229 -> 230 bytes
 debian/changelog                               |   6 ++
 debian/patches/do_not_attempt_GO.db_test.patch |  23 +++---
 inst/doc/changelog.txt                         |  40 +++++++++
 inst/doc/intro.pdf                             | Bin 46191 -> 46191 bytes
 man/alias2Symbol.Rd                            |  28 ++++++-
 man/ebayes.Rd                                  |   4 +-
 man/fitfdist.Rd                                |   2 +-
 man/getEAWP.Rd                                 |   3 +
 man/goana.Rd                                   |   8 +-
 man/ids2indices.Rd                             |   6 +-
 man/removeBatchEffect.Rd                       |  35 +++++---
 man/squeezeVar.Rd                              |   5 +-
 tests/limma-Tests.Rout.save                    |  16 ++--
 26 files changed, 238 insertions(+), 175 deletions(-)

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