[med-svn] r22086 - trunk/packages/bioperl/trunk/debian
Andreas Tille
tille at moszumanska.debian.org
Sun Jun 5 06:45:18 UTC 2016
Author: tille
Date: 2016-06-05 06:45:17 +0000 (Sun, 05 Jun 2016)
New Revision: 22086
Modified:
trunk/packages/bioperl/trunk/debian/changelog
trunk/packages/bioperl/trunk/debian/control
Log:
cme fix dpkg-control (Needed several manual postprocessing since cme has the habit to move comments to the end of a section)
Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog 2016-06-04 20:36:38 UTC (rev 22085)
+++ trunk/packages/bioperl/trunk/debian/changelog 2016-06-05 06:45:17 UTC (rev 22086)
@@ -1,3 +1,10 @@
+bioperl (1.6.924-4) UNRELEASED; urgency=medium
+
+ * cme fix dpkg-control (Needed several manual postprocessing since cme
+ has the habit to move comments to the end of a section)
+
+ -- Andreas Tille <tille at debian.org> Sun, 05 Jun 2016 08:19:44 +0200
+
bioperl (1.6.924-3) unstable; urgency=medium
* Fix FTBFS with perl 5.22
Modified: trunk/packages/bioperl/trunk/debian/control
===================================================================
--- trunk/packages/bioperl/trunk/debian/control 2016-06-04 20:36:38 UTC (rev 22085)
+++ trunk/packages/bioperl/trunk/debian/control 2016-06-05 06:45:17 UTC (rev 22086)
@@ -1,117 +1,119 @@
Source: bioperl
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>,
+ Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>,
+ Olivier Sallou <osallou at debian.org>
Section: science
Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>,
- Steffen Moeller <moeller at debian.org>,
- Andreas Tille <tille at debian.org>,
- Olivier Sallou <osallou at debian.org>
Build-Depends: debhelper (>= 9)
Build-Depends-Indep: perl,
# Unnecessary according to lintian, but building with sbuild shows the contrary.
- libmodule-build-perl (>= 0.420000),
- libio-string-perl,
- libdata-stag-perl,
- libtest-most-perl,
+ libmodule-build-perl (>= 0.420000),
+ libio-string-perl,
+ libdata-stag-perl,
+ libtest-most-perl,
# Recommended in Build.PL (we want them to run the tests)
- libace-perl,
- libalgorithm-munkres-perl,
- libarray-compare-perl,
- libbio-asn1-entrezgene-perl,
- libbio-samtools-perl,
- libcgi-pm-perl | perl (<< 5.19),
- libclone-perl,
- libconvert-binary-c-perl,
- libdbd-sqlite3-perl,
- libdbd-mysql-perl,
- libdbd-pg-perl,
- libgd-perl,
- libgraph-perl,
- libgraphviz-perl,
- libhtml-parser-perl,
- libhtml-tableextract-perl,
- liblist-moreutils-perl,
- libpostscript-perl,
- libset-scalar-perl,
- libsoap-lite-perl,
- libsort-naturally-perl,
- libspreadsheet-parseexcel-perl,
- libspreadsheet-writeexcel-perl,
- libstorable-perl,
- libsvg-perl,
- libsvg-graph-perl,
- libtest-pod-perl,
- liburi-perl,
- libxml-dom-xpath-perl,
- libxml-parser-perl,
- libxml-sax-perl,
- libxml-sax-writer-perl,
- libxml-twig-perl,
- libxml-simple-perl,
- libxml-writer-perl,
- libxml-libxml-perl,
- libwww-perl,
+ libace-perl,
+ libalgorithm-munkres-perl,
+ libarray-compare-perl,
+ libbio-asn1-entrezgene-perl,
+ libbio-samtools-perl,
+ libcgi-pm-perl | perl (<< 5.19),
+ libclone-perl,
+ libconvert-binary-c-perl,
+ libdbd-sqlite3-perl,
+ libdbd-mysql-perl,
+ libdbd-pg-perl,
+ libgd-perl,
+ libgraph-perl,
+ libgraphviz-perl,
+ libhtml-parser-perl,
+ libhtml-tableextract-perl,
+ liblist-moreutils-perl,
+ libpostscript-perl,
+ libset-scalar-perl,
+ libsoap-lite-perl,
+ libsort-naturally-perl,
+ libspreadsheet-parseexcel-perl,
+ libspreadsheet-writeexcel-perl,
+ libstorable-perl,
+ libsvg-perl,
+ libsvg-graph-perl,
+ libtest-pod-perl,
+ liburi-perl,
+ libxml-dom-xpath-perl,
+ libxml-parser-perl,
+ libxml-sax-perl,
+ libxml-sax-writer-perl,
+ libxml-twig-perl,
+ libxml-simple-perl,
+ libxml-writer-perl,
+ libxml-libxml-perl,
+ libwww-perl,
# Needed to avoid downloading DTDs during the tests and therefore fail when network is not available:
- libxml-sax-expatxs-perl
-Standards-Version: 3.9.6
+ libxml-sax-expatxs-perl
+Standards-Version: 3.9.8
Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/bioperl/trunk/
Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/bioperl/trunk/
Homepage: http://www.bioperl.org/
Package: bioperl
Architecture: all
-Depends: libbio-perl-perl ( = ${source:Version} ), ${misc:Depends}, ${perl:Depends}
-Recommends: bioperl-run ( >= 1.6.0 ),
+Depends: libbio-perl-perl (= ${source:Version}),
+ ${misc:Depends},
+ ${perl:Depends}
+Recommends: bioperl-run,
# for the following see #650412
# most of `binary -help` outputs
- perl-doc,
+ perl-doc,
# some libraries already in libbio-perl-perl's Recommends:
-# bp_biofetch_genbank_proxy
- libhttp-message-perl,
- libwww-perl,
- libcache-cache-perl,
-# bp_blast2tree
- libbio-perl-run-perl,
-# bp_bulk_load_gff
- libdbi-perl,
-# bp_chaos_plot
- libgd-gd2-perl,
-# bp_das_server
- libapache-dbi-perl,
-# bp_download_query_genbank
- liburi-perl,
-# bp_einfo
-# liburi-perl
-# libhttp-message-perl
- libxml-simple-perl,
-# bp_fast_load_gff
-# libdbi-perl
-# bp_fetch [not for local indexing]
-# bp_flanks
-# libhttp-message-perl
-# bp_genbank2gff
-# libhttp-message-perl
-# libdbi-perl
-# bp_genbank2gff3
- libyaml-perl,
-# bp_hivq
-# libhttp-message-perl
-# libxml-simple-perl
-# bp_meta_gff
-# libdbi-perl
-# bp_netinstall
-# bp_pairwise_kaks
-# libbio-perl-run-perl
-# bp_process_wormbase
- libace-perl,
-# bp_query_entrez_taxa
-# bp_remote_blast
-# bp_revtrans-motif
- liblist-moreutils-perl,
-# bp_taxid4species
- libxml-twig-perl,
-# bp_taxonomy2tree
- libset-scalar-perl
+# bp_biofetch_genbank_proxy
+ libhttp-message-perl,
+ libwww-perl,
+ libcache-cache-perl,
+# bp_blast2tree
+ libbio-perl-run-perl,
+# bp_bulk_load_gff
+ libdbi-perl,
+# bp_chaos_plot
+ libgd-gd2-perl,
+# bp_das_server
+ libapache-dbi-perl,
+# bp_download_query_genbank
+ liburi-perl,
+# bp_einfo
+# liburi-perl
+# libhttp-message-perl
+ libxml-simple-perl,
+# bp_fast_load_gff
+# libdbi-perl
+# bp_fetch [not for local indexing]
+# bp_flanks
+# libhttp-message-perl
+# bp_genbank2gff
+# libhttp-message-perl
+# libdbi-perl
+# bp_genbank2gff3
+ libyaml-perl,
+# bp_hivq
+# libhttp-message-perl
+# libxml-simple-perl
+# bp_meta_gff
+# libdbi-perl
+# bp_netinstall
+# bp_pairwise_kaks
+# libbio-perl-run-perl
+# bp_process_wormbase
+ libace-perl,
+# bp_query_entrez_taxa
+# bp_remote_blast
+# bp_revtrans-motif
+ liblist-moreutils-perl,
+# bp_taxid4species
+ libxml-twig-perl,
+# bp_taxonomy2tree
+ libset-scalar-perl
Suggests: groff-base
Description: Perl tools for computational molecular biology
The Bioperl project is a coordinated effort to collect computational methods
@@ -127,51 +129,54 @@
The suggested package enhances the manual pages.
Package: libbio-perl-perl
+Architecture: all
Section: perl
-Architecture: all
-Depends: libio-string-perl, libdata-stag-perl, ${misc:Depends}, ${perl:Depends}
-Replaces: grinder (<< 0.5.3-3~)
-Breaks: grinder (<< 0.5.3-3~)
+Depends: libio-string-perl,
+ libdata-stag-perl,
+ ${misc:Depends},
+ ${perl:Depends}
# Temporary workaround as bioperl-run has not been split
-Recommends: bioperl-run ( >= 1.6.0 ) | libbio-perl-run-perl ( >= 1.6.0 ),
+Recommends: bioperl-run | libbio-perl-run-perl,
# Recommended in Build.PL
- libace-perl,
- libalgorithm-munkres-perl,
- libarray-compare-perl,
- libbio-asn1-entrezgene-perl,
- libclone-perl,
- libconvert-binary-c-perl,
- libdbd-sqlite3-perl,
- libdbd-mysql-perl,
- libdbd-pg-perl,
- libgd-perl,
- libgraph-perl,
- libgraphviz-perl,
- libhtml-parser-perl,
- libhtml-tableextract-perl,
- liblist-moreutils-perl,
- libpostscript-perl,
- libset-scalar-perl,
- libsoap-lite-perl,
- libsort-naturally-perl,
- libspreadsheet-parseexcel-perl,
- libspreadsheet-writeexcel-perl,
- libstorable-perl,
- libsvg-perl,
- libsvg-graph-perl,
- liburi-perl,
- libxml-dom-xpath-perl,
- libxml-parser-perl,
- libxml-sax-perl,
- libxml-sax-writer-perl,
- libxml-simple-perl,
- libxml-twig-perl,
- libxml-writer-perl,
- libxml-libxml-perl,
- libwww-perl
+ libace-perl,
+ libalgorithm-munkres-perl,
+ libarray-compare-perl,
+ libbio-asn1-entrezgene-perl,
+ libclone-perl,
+ libconvert-binary-c-perl,
+ libdbd-sqlite3-perl,
+ libdbd-mysql-perl,
+ libdbd-pg-perl,
+ libgd-perl,
+ libgraph-perl,
+ libgraphviz-perl,
+ libhtml-parser-perl,
+ libhtml-tableextract-perl,
+ liblist-moreutils-perl,
+ libpostscript-perl,
+ libset-scalar-perl,
+ libsoap-lite-perl,
+ libsort-naturally-perl,
+ libspreadsheet-parseexcel-perl,
+ libspreadsheet-writeexcel-perl,
+ libstorable-perl,
+ libsvg-perl,
+ libsvg-graph-perl,
+ liburi-perl,
+ libxml-dom-xpath-perl,
+ libxml-parser-perl,
+ libxml-sax-perl,
+ libxml-sax-writer-perl,
+ libxml-simple-perl,
+ libxml-twig-perl,
+ libxml-writer-perl,
+ libxml-libxml-perl,
+ libwww-perl
Suggests: bioperl,
- libxml-sax-expatxs-perl
+ libxml-sax-expatxs-perl
# Needed to avoid downloading DTDs.
+Breaks: grinder (<< 0.5.3-3~)
+Replaces: grinder (<< 0.5.3-3~)
Description: BioPerl core perl modules
BioPerl is a toolkit of perl modules useful in building bioinformatics
solutions in Perl. It is built in an object-oriented manner so that many
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