[med-svn] r22087 - in trunk/packages/bioperl/trunk/debian: . patches

[Andreas Tille]

Author: tille
Date: 2016-06-05 06:49:52 +0000 (Sun, 05 Jun 2016)
New Revision: 22087

Added:
   trunk/packages/bioperl/trunk/debian/patches/BioPerl-1.006924-RT106756.patch
Modified:
   trunk/packages/bioperl/trunk/debian/changelog
   trunk/packages/bioperl/trunk/debian/patches/series
Log:
Fix FTBFS with Perl 5.24 by applying upstream patch


Modified: trunk/packages/bioperl/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl/trunk/debian/changelog	2016-06-05 06:45:17 UTC (rev 22086)
+++ trunk/packages/bioperl/trunk/debian/changelog	2016-06-05 06:49:52 UTC (rev 22087)
@@ -2,6 +2,8 @@
 
   * cme fix dpkg-control (Needed several manual postprocessing since cme
     has the habit to move comments to the end of a section)
+  * Fix FTBFS with Perl 5.24 by applying upstream patch
+    Closes: #825429
 
  -- Andreas Tille <tille at debian.org>  Sun, 05 Jun 2016 08:19:44 +0200
 

Added: trunk/packages/bioperl/trunk/debian/patches/BioPerl-1.006924-RT106756.patch
===================================================================
--- trunk/packages/bioperl/trunk/debian/patches/BioPerl-1.006924-RT106756.patch	                        (rev 0)
+++ trunk/packages/bioperl/trunk/debian/patches/BioPerl-1.006924-RT106756.patch	2016-06-05 06:49:52 UTC (rev 22087)
@@ -0,0 +1,21 @@
+From b1c2d3e9b1eb9f5a20f17b36be7659ba2bf642e0 Mon Sep 17 00:00:00 2001
+From: Slaven Rezic <slaven at rezic.de>
+Date: Fri, 8 Apr 2016 08:27:25 +0200
+Bug-Debian: https://bugs.debian.org/825429
+Subject: [PATCH] fix my in my redeclaration (RT #106756)
+
+---
+ Bio/Tools/Alignment/Consed.pm | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+--- a/Bio/Tools/Alignment/Consed.pm
++++ b/Bio/Tools/Alignment/Consed.pm
+@@ -1709,7 +1709,7 @@ Recursion is kewl, but this sub should l
+ 
+ 
+ sub reverse_recurse($$) {
+-    my ($r_source,my $r_destination) = @_;
++    my ($r_source,$r_destination) = @_;
+     if (!@$r_source) {
+         return $r_destination;
+     }

Modified: trunk/packages/bioperl/trunk/debian/patches/series
===================================================================
--- trunk/packages/bioperl/trunk/debian/patches/series	2016-06-05 06:45:17 UTC (rev 22086)
+++ trunk/packages/bioperl/trunk/debian/patches/series	2016-06-05 06:49:52 UTC (rev 22087)
@@ -1,2 +1,3 @@
 fix_examples_perl_location
 #fix_berkeleydb3_temp_file_creation
+BioPerl-1.006924-RT106756.patch