[med-svn] [falconkit] 01/03: Add shebang lines to python scripts

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository falconkit.

commit f6f48f13f6cb6dfb877aa48c13b093deeea2a01d
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Tue Mar 8 23:57:35 2016 -0800

    Add shebang lines to python scripts
---
 debian/patches/add-shebang-lines.patch | 108 +++++++++++++++++++++++++++++++++
 debian/patches/series                  |   1 +
 2 files changed, 109 insertions(+)

diff --git a/debian/patches/add-shebang-lines.patch b/debian/patches/add-shebang-lines.patch
new file mode 100644
index 0000000..1804d8d
--- /dev/null
+++ b/debian/patches/add-shebang-lines.patch
@@ -0,0 +1,108 @@
+Description: Add shebang lines to executable scripts
+Author: Afif Elghraoui <afif at ghraoui.name>
+Forwarded: no
+Last-Update: 2015-12-20
+--- falconkit.orig/src/py_scripts/fc_consensus.py
++++ falconkit/src/py_scripts/fc_consensus.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.consensus import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ctg_link_analysis.py
++++ falconkit/src/py_scripts/fc_ctg_link_analysis.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ctg_link_analysis import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_contig_annotate.py
++++ falconkit/src/py_scripts/fc_contig_annotate.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.contig_annotate import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_dedup_a_tigs.py
++++ falconkit/src/py_scripts/fc_dedup_a_tigs.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.dedup_a_tigs import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_graph_to_contig.py
++++ falconkit/src/py_scripts/fc_graph_to_contig.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.graph_to_contig import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_graph_to_utgs.py
++++ falconkit/src/py_scripts/fc_graph_to_utgs.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.graph_to_utgs import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ovlp_stats.py
++++ falconkit/src/py_scripts/fc_ovlp_stats.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ovlp_stats import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ovlp_filter.py
++++ falconkit/src/py_scripts/fc_ovlp_filter.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ovlp_filter import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_actg_coordinate.py
++++ falconkit/src/py_scripts/fc_actg_coordinate.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.actg_coordinate import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts/fc_ovlp_to_graph.py
++++ falconkit/src/py_scripts/fc_ovlp_to_graph.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ from falcon_kit.mains.ovlp_to_graph import main
+ import sys
+ 
+--- falconkit.orig/src/py_scripts_v0.1/redis_graph.py
++++ falconkit/src/py_scripts_v0.1/redis_graph.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ import redis
+ import sys
+ from pbcore.io import FastaReader
+--- falconkit.orig/src/py_scripts_v0.1/overlapper.py
++++ falconkit/src/py_scripts_v0.1/overlapper.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++x
+ from falcon_kit import kup, falcon, DWA, get_consensus, get_alignment
+ from pbcore.io import FastaReader
+ import numpy as np
+--- falconkit.orig/src/py_scripts_v0.1/falcon_dedup.py
++++ falconkit/src/py_scripts_v0.1/falcon_dedup.py
+@@ -1,3 +1,5 @@
++#!/usr/bin/python
++
+ import subprocess
+ from pbcore.io import FastaReader
+ 
diff --git a/debian/patches/series b/debian/patches/series
index e69de29..68c9b0f 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -0,0 +1 @@
+add-shebang-lines.patch

-- 
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