[med-svn] [vsearch] branch master updated (8488925 -> 4a4f7f0)

[Andreas Tille]

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tille pushed a change to branch master
in repository vsearch.

      from  8488925   Removed citation that belongs to different program at authors request
       new  b2a6636   Imported Upstream version 1.10.1
       new  09125b2   Merge tag 'upstream/1.10.1'
       new  8e9a555   New upstream version
       new  4a4f7f0   Remove patch applied upstream

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 README.md                     |    9 +-
 configure                     |   20 +-
 configure.ac                  |    2 +-
 debian/changelog              |    3 +-
 debian/patches/series         |    1 -
 debian/patches/spelling.patch |   44 -
 man/vsearch.1                 |  171 +-
 src/Makefile.am               |    5 +-
 src/Makefile.in               |   22 +-
 src/chimera.cc                |  135 +-
 src/eestats.cc                |  337 +++
 src/{shuffle.h => eestats.h}  |    2 +-
 src/fasta.cc                  |   84 +-
 src/fasta.h                   |   11 +
 src/fastq.cc                  |    9 +-
 src/mask.cc                   |    4 +
 src/mergepairs.cc             |  933 ++++----
 src/msa.cc                    |   71 +-
 src/pvalue.h                  | 4843 -----------------------------------------
 src/{shuffle.cc => rerep.cc}  |   72 +-
 src/{shuffle.h => rerep.h}    |    2 +-
 src/util.cc                   |   25 +-
 src/vsearch.cc                |  242 +-
 src/vsearch.h                 |   13 +-
 24 files changed, 1407 insertions(+), 5653 deletions(-)
 delete mode 100644 debian/patches/spelling.patch
 create mode 100644 src/eestats.cc
 copy src/{shuffle.h => eestats.h} (99%)
 delete mode 100644 src/pvalue.h
 copy src/{shuffle.cc => rerep.cc} (70%)
 copy src/{shuffle.h => rerep.h} (99%)

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