[med-svn] [roary] 01/02: add autopkgtest

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

sascha-guest pushed a commit to branch master
in repository roary.

commit 8a19d08123bcde4b78479d297af2f8621a248b91
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Fri Mar 11 11:45:49 2016 +0000

    add autopkgtest
---
 debian/changelog                |  6 ++++++
 debian/control                  |  1 +
 debian/tests/control            |  2 ++
 debian/tests/expected_files.out | 18 ++++++++++++++++++
 debian/tests/test-installed     | 18 ++++++++++++++++++
 5 files changed, 45 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 5e70b78..24c4101 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+roary (3.6.0+dfsg-2) unstable; urgency=medium
+
+  * Add autopkgtest.
+
+ -- Sascha Steinbiss <sascha at steinbiss.name>  Fri, 11 Mar 2016 11:43:37 +0000
+
 roary (3.6.0+dfsg-1) unstable; urgency=medium
 
   * New upstream release.
diff --git a/debian/control b/debian/control
index 435e118..106a027 100644
--- a/debian/control
+++ b/debian/control
@@ -36,6 +36,7 @@ Build-Depends: debhelper (>= 9),
                fasttree
 Build-Depends-Indep: perl
 Standards-Version: 3.9.7
+Testsuite: autopkgtest
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/roary.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/roary.git
 Homepage: http://sanger-pathogens.github.io/Roary/
diff --git a/debian/tests/control b/debian/tests/control
new file mode 100644
index 0000000..636b906
--- /dev/null
+++ b/debian/tests/control
@@ -0,0 +1,2 @@
+Tests: test-installed
+Depends: @
diff --git a/debian/tests/expected_files.out b/debian/tests/expected_files.out
new file mode 100644
index 0000000..8ecff77
--- /dev/null
+++ b/debian/tests/expected_files.out
@@ -0,0 +1,18 @@
+out
+out/gene_presence_absence.csv
+out/core_accessory.tab
+out/clustered_proteins
+out/number_of_new_genes.Rtab
+out/core_accessory_graph.dot
+out/summary_statistics.txt
+out/accessory.header.embl
+out/accessory.tab
+out/number_of_unique_genes.Rtab
+out/number_of_genes_in_pan_genome.Rtab
+out/core_accessory.header.embl
+out/gene_presence_absence.Rtab
+out/number_of_conserved_genes.Rtab
+out/accessory_graph.dot
+out/blast_identity_frequency.Rtab
+out/accessory_binary_genes.fa.newick
+out/accessory_binary_genes.fa
diff --git a/debian/tests/test-installed b/debian/tests/test-installed
new file mode 100755
index 0000000..b374bb0
--- /dev/null
+++ b/debian/tests/test-installed
@@ -0,0 +1,18 @@
+#!/bin/sh
+# autopkgtest check: Run simple test data through Roary 
+# Author: Sascha Steinbiss <sascha at steinbiss.name>
+set -e
+
+ORIGDIR=$(pwd)
+DATADIR=$ORIGDIR/t/data/genbank_gbff
+WORKDIR=$(mktemp -d)
+
+trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
+cd $WORKDIR
+
+cp $DATADIR/*.gff .
+roary -f out *.gff
+
+[ -d out ]
+
+find out | diff - $ORIGDIR/debian/tests/expected_files.out

-- 
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