[med-svn] [spades] branch debian/jessie-backports updated (3ed95e9 -> b0af814)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch debian/jessie-backports
in repository spades.

      from  3ed95e9   spades (3.7.0+dfsg-1~bpo8+1) jessie-backports; urgency=medium
      adds  a93a129   Imported Upstream version 3.7.1+dfsg
      adds  304c429   Merge tag 'upstream/3.7.1+dfsg'
      adds  ae744f6   new upstream version
      adds  1e37f1b   always use pristine-tar
      adds  6d53a34   switch manpage building to asciidoctor
      adds  58f5231   enable full hardening
      adds  0551a97   add override
      adds  7ce3024   use Debian packaged YAML module
      adds  f8c160f   Use a sed command to fix yaml import statements to use the Debian package
      adds  8ff60e0   Update email address
      adds  3bdfebf   spades (3.7.1+dfsg-2) unstable; urgency=medium
       new  b0af814   Merge tag 'debian/3.7.1+dfsg-2' into debian/jessie-backports

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 VERSION                                            |   2 +-
 changelog.html                                     |  14 ++-
 configs/debruijn/coverage_based_rr.info            |  13 ---
 debian/changelog                                   |  21 +++++
 debian/control                                     |   4 +-
 debian/copyright                                   |   2 +-
 debian/gbp.conf                                    |   2 +
 .../man_src/{dipspades.1.ronn => dipspades.1.adoc} | 101 ++++++++++----------
 debian/man_src/{spades.1.ronn => spades.1.adoc}    | 103 +++++++++++----------
 .../man_src/{truspades.1.ronn => truspades.1.adoc} |  27 +++---
 .../0001_use_debian_packaged_python-yaml.patch     |  76 ---------------
 debian/patches/0003_accept-system-bwa.patch        |  12 +--
 .../0101_cmake_ignore_removed_python-yaml.patch    |   4 +-
 .../0102_cmake_ignore_removed_python-joblib.patch  |   4 +-
 debian/patches/0103_use-debian-packaged-bwa.patch  |   4 +-
 debian/patches/0110_build_single_thread.patch      |   4 +-
 debian/patches/0111_use_full_config_dirs.patch     |  16 ++--
 debian/patches/0112_spelling.patch                 |  16 ++--
 debian/patches/0113_adjust_paths.patch             |   8 +-
 debian/patches/0114_use_debian_provided_libs.patch |  20 ++--
 debian/patches/series                              |   1 -
 debian/rules                                       |   8 +-
 debian/source.lintian-overrides                    |   2 +
 ext/include/city/citycrc.h                         |   2 +-
 ext/src/cityhash/city.cc                           |   2 +-
 manual.html                                        |  38 ++++----
 src/cmake/pack.cmake                               |   4 +-
 src/corrector/dataset_processor.cpp                |  46 +--------
 28 files changed, 237 insertions(+), 319 deletions(-)
 delete mode 100644 configs/debruijn/coverage_based_rr.info
 create mode 100644 debian/gbp.conf
 rename debian/man_src/{dipspades.1.ronn => dipspades.1.adoc} (71%)
 rename debian/man_src/{spades.1.ronn => spades.1.adoc} (70%)
 rename debian/man_src/{truspades.1.ronn => truspades.1.adoc} (61%)
 delete mode 100644 debian/patches/0001_use_debian_packaged_python-yaml.patch
 create mode 100644 debian/source.lintian-overrides

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