[med-svn] [iva] 06/07: java building and manpage creation

[Sascha Steinbiss]

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sascha-guest pushed a commit to branch master
in repository iva.

commit 206f550e58e112ac27b739d6108a0e665e03bded
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Wed May 4 10:18:55 2016 +0000

    java building and manpage creation
---
 debian/rules | 15 ++++++++++++++-
 1 file changed, 14 insertions(+), 1 deletion(-)

diff --git a/debian/rules b/debian/rules
index cc9ca2d..7109117 100755
--- a/debian/rules
+++ b/debian/rules
@@ -16,8 +16,21 @@ override_dh_auto_build:
 	chmod a-x $(read_trim_dir)/adapters.fasta
 	chmod a+x $(gage_dir)/getCorrectnessStats.sh
 	chmod a+x $(ratt_dir)/main.ratt.pl
-	dh_auto_build
+	javac -verbose iva/gage/*.java
+	dh_auto_build --
+
+override_dh_installman:
+	mkdir -p $(mandir)
+	PYTHONPATH=. help2man -N -o $(mandir)/iva.1 -n 'iterative virus assembler' --no-discard-stderr  ./scripts/iva
+	PYTHONPATH=. help2man -N -o $(mandir)/iva_qc.1 -n 'compare an assembly to a reference' --no-discard-stderr ./scripts/iva_qc
+	PYTHONPATH=. help2man -N -o $(mandir)/iva_qc_make_db.1 -n 'make a database as input for iva_qc' --no-discard-stderr  ./scripts/iva_qc_make_db
+	dh_installman --
 
 override_dh_auto_clean:
 	rm -rf .pybuild
+	rm -f iva/gage/*.class
+	rm -rf $(mandir)
 	find . -name __pycache__ | xargs rm -rf
+
+override_dh_auto_test:
+	python3 setup.py test

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