[med-svn] [htslib] 05/06: Release 1.3.2: bin field bug fix, RTLD_GLOBAL plugins

[Andreas Tille]

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tille pushed a commit to branch debian/unstable
in repository htslib.

commit 6bed35a3eaefa3baa2c7e0166ceba442212f166b
Merge: 0f298ce 5586168
Author: John Marshall <jm18 at sanger.ac.uk>
Date:   Tue Sep 13 07:15:37 2016 +0100

    Release 1.3.2: bin field bug fix, RTLD_GLOBAL plugins

 Makefile             |  2 +-
 NEWS                 | 13 ++++++++++++-
 cram/cram_io.c       |  4 ++++
 cram/cram_samtools.c |  2 +-
 hfile.c              |  6 ++----
 hts.c                |  9 ++++-----
 htsfile.1            |  2 +-
 plugin.c             | 24 +++++++++++++++++++++++-
 sam.c                |  3 +--
 tabix.1              |  2 +-
 10 files changed, 50 insertions(+), 17 deletions(-)

diff --cc Makefile
index 3fd9bee,3fd9bee..149dbfd
--- a/Makefile
+++ b/Makefile
@@@ -92,7 -92,7 +92,7 @@@ HTSPREFIX 
  include htslib_vars.mk
  
  
--PACKAGE_VERSION  = 1.3.1
++PACKAGE_VERSION  = 1.3.2
  LIBHTS_SOVERSION = 1
  
  
diff --cc NEWS
index b7bc4d4,0db910f..384e2a3
--- a/NEWS
+++ b/NEWS
@@@ -1,4 -1,7 +1,15 @@@
- Noteworthy changes in release 1.3.1 (22 April 2016)
 -Noteworthy changes in release 1.4
++Noteworthy changes in release 1.3.2  (13 September 2016)
+ 
++* Corrected bin calculation when converting directly from CRAM to BAM.
++  Previously a small fraction of converted reads would fail Picard's
++  validation with "bin field of BAM record does not equal value computed"
++  (SAMtools issue #574).
+ 
 -Noteworthy changes in release 1.3.1 (22 April 2016)
++* Plugins can now signal to HTSlib which of RTLD_LOCAL and RTLD_GLOBAL
++  they wish to be opened with -- previously they were always RTLD_LOCAL.
++
++
++Noteworthy changes in release 1.3.1  (22 April 2016)
  
  * Improved error checking and reporting, especially of I/O errors when
    writing output files (#17, #315, PR #271, PR #317).
diff --cc htsfile.1
index e68fac5,e68fac5..56361f5
--- a/htsfile.1
+++ b/htsfile.1
@@@ -1,4 -1,4 +1,4 @@@
--.TH htsfile 1 "22 April 2016" "htslib-1.3.1" "Bioinformatics tools"
++.TH htsfile 1 "13 September 2016" "htslib-1.3.2" "Bioinformatics tools"
  .SH NAME
  htsfile \- identify high-throughput sequencing data files
  .\"
diff --cc tabix.1
index 728cff5,728cff5..fb21399
--- a/tabix.1
+++ b/tabix.1
@@@ -1,4 -1,4 +1,4 @@@
--.TH tabix 1 "22 April 2016" "htslib-1.3.1" "Bioinformatics tools"
++.TH tabix 1 "13 September 2016" "htslib-1.3.2" "Bioinformatics tools"
  .SH NAME
  .PP
  bgzip \- Block compression/decompression utility

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