[med-svn] [htslib] 06/06: Merge tag '1.3.2' into debian/unstable

[Andreas Tille]

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tille pushed a commit to branch debian/unstable
in repository htslib.

commit b9d85dc4fc91a7cebf69d26b7c5d8e1bab6756cf
Merge: 5ec9af0 6bed35a
Author: Andreas Tille <tille at debian.org>
Date:   Fri Nov 4 12:50:25 2016 +0100

    Merge tag '1.3.2' into debian/unstable
    
    HTSlib patch release 1.3.2: bin bug fix, RTLD_GLOBAL plugins
    
    * Corrected bin calculation when converting directly from CRAM to BAM.
      Previously a small fraction of converted reads would fail Picard's
      validation with "bin field of BAM record does not equal value computed"
      (SAMtools issue #574).
    
    * Plugins can now signal to HTSlib which of RTLD_LOCAL and RTLD_GLOBAL
      they wish to be opened with -- previously they were always RTLD_LOCAL.

 Makefile             |  2 +-
 NEWS                 | 13 ++++++++++++-
 cram/cram_io.c       |  4 ++++
 cram/cram_samtools.c |  2 +-
 hfile.c              |  6 ++----
 hts.c                |  9 ++++-----
 htsfile.1            |  2 +-
 plugin.c             | 24 +++++++++++++++++++++++-
 sam.c                |  3 +--
 tabix.1              |  2 +-
 10 files changed, 50 insertions(+), 17 deletions(-)

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