[med-svn] [bedtools] 04/04: bedtools (2.26.0+dfsg-3) unstable; urgency=medium

[Charles Plessy]

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plessy pushed a commit to branch master
in repository bedtools.

commit 7b6f84548f237c12575677f9d34eebca06e39661
Author: Charles Plessy <plessy at debian.org>
Date:   Mon Nov 7 22:05:53 2016 +0900

    bedtools (2.26.0+dfsg-3) unstable; urgency=medium
    
      d6d3452 Sync with upstream repo at commit 6bf23c, closes: #831833.
    
     -- Charles Plessy <plessy at debian.org>  Sat, 05 Nov 2016 21:48:09 +0900
---
 debian/changelog                                |  6 ++++
 src/utils/FileRecordTools/FileReaders/Makefile~ | 41 -------------------------
 2 files changed, 6 insertions(+), 41 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 0122931..80f9d70 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+bedtools (2.26.0+dfsg-3) unstable; urgency=medium
+
+  d6d3452 Sync with upstream repo at commit 6bf23c, closes: #831833.
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 05 Nov 2016 21:48:09 +0900
+
 bedtools (2.26.0+dfsg-2) unstable; urgency=medium
 
   * Enable reproducible builds
diff --git a/src/utils/FileRecordTools/FileReaders/Makefile~ b/src/utils/FileRecordTools/FileReaders/Makefile~
deleted file mode 100644
index 556c7f5..0000000
--- a/src/utils/FileRecordTools/FileReaders/Makefile~
+++ /dev/null
@@ -1,41 +0,0 @@
-OBJ_DIR = ../../../../obj/
-BIN_DIR = ../../../../bin/
-UTILITIES_DIR = ../../../utils/
-# -------------------
-# define our includes
-# -------------------
-INCLUDES = -I$(UTILITIES_DIR)/BamTools/include/ \
-			-I$(UTILITIES_DIR)/BamTools/src/ \
-			-I$(UTILITIES_DIR)/fileType/ \
-			 -I$(UTILITIES_DIR)/Contexts/ \
-			-I$(UTILITIES_DIR)/GenomeFile/ \
-			-I$(UTILITIES_DIR)/general/ \
-			-I$(UTILITIES_DIR)/gzstream/ \
-           -I$(UTILITIES_DIR)/version/
-			
-
-# ----------------------------------
-# define our source and object files
-# ----------------------------------
-SOURCES= FileReader.h FileReader.cpp SingleLineDelimTransferBuffer.h SingleLineDelimTransferBuffer.cpp \
-		SingleLineDelimTextFileReader.h SingleLineDelimTextFileReader.cpp BamFileReader.h BamFileReader.cpp \
-		BufferedStreamMgr.h BufferedStreamMgr.cpp InputStreamMgr.h InputStreamMgr.cpp
-OBJECTS= FileReader.o SingleLineDelimTransferBuffer.o SingleLineDelimTextFileReader.o BamFileReader.o BufferedStreamMgr.o InputStreamMgr.o 
-_EXT_OBJECTS=ParseTools.o QuickString.o CompressionTools.o
-EXT_OBJECTS=$(patsubst %,$(OBJ_DIR)/%,$(_EXT_OBJECTS))
-BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
-
-all: $(BUILT_OBJECTS)
-
-.PHONY: all
-
-$(BUILT_OBJECTS): $(SOURCES)
-	@echo "  * compiling" $(*F).cpp
-	@$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES)
-
-clean:
-	@echo "Cleaning up."
-	@rm -f $(OBJ_DIR)/FileReader.o $(OBJ_DIR)SingleLineDelimTransferBuffer $(OBJ_DIR)/SingleLineDelimTextFileReader.o \
-			$(OBJ_DIR)/BinaryFileReader.o $(OBJ_DIR)/BamFileReader.o $(OBJ_DIR)/BufferedStreamMgr.o $(OBJ_DIR)/InputStreamMgr.o $(OBJ_DIR)/PushBackGzStream.o
-
-.PHONY: clean

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