[med-svn] [bedtools] annotated tag debian/2.26.0+dfsg-3 created (now 99e6530)
Charles Plessy
plessy at moszumanska.debian.org
Mon Nov 7 13:06:48 UTC 2016
This is an automated email from the git hooks/post-receive script.
plessy pushed a change to annotated tag debian/2.26.0+dfsg-3
in repository bedtools.
at 99e6530 (tag)
tagging 7b6f84548f237c12575677f9d34eebca06e39661 (commit)
replaces 2.26.0+dfsg
tagged by Charles Plessy
on Mon Nov 7 22:06:21 2016 +0900
- Log -----------------------------------------------------------------
bedtools (2.26.0+dfsg-3) unstable; urgency=medium
d6d3452 Sync with upstream repo at commit 6bf23c, closes: #831833.
-- Charles Plessy <plessy at debian.org> Sat, 05 Nov 2016 21:48:09 +0900
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Andreas Tille (38):
Add "Depends: @, samtools" as advised in #747337
Use content from bedtools-test package to actually run the test suite
Use dh to easily enable unit tests at package build time
Build-Depends: samtools to run the full test suite
Merge tag '2.20.1' into debian/unstable
New upstream version
Fix permission of some genome example files
Merge branch 'debian/unstable' of ssh://git.debian.org/git/debian-med/bedtools into debian/unstable
Remove superfluous debian/README.source
Add README.source to descripe the workflow for this repository that derives from Debian Med policy
Replace specific version by "<version>"
Add policy URL with the short explanation
Further hints
Fix pritine-tar step description
Merge tag 'v2.24.0' into debian/unstable
Refresh patches
Mention new upstream version in changelog
Bash completions now go to /usr/share/bash-completion/completions
Strip executable flag from all *.bed files
Make sure all *.sh scripts of the test suite have a proper '#!/bin/bash' line and the executable flag set
update download location, turn DEP5 incompatible License field in header into a Comment
Upload to unstable
Tests need bgzip from tabix package
Add missing input file for tests and fix upstream test script
link to genomes files in autopkgtests to enable more tests passing
Fix MIPS build issue
Switch to default repository layout
Remove docs/content/images/tool-glyphs/barski_binding_site.png from upstream tarball
Merge tag '2.26.0+dfsg'
Delete reference to removed image from Debian shipped doc
cme fix dpkg-control
hardening += all
Fix line length in d/changelog
cme fix dpkg-copyright
drop outdated Homepage field from debian/upstream/metadata
debian/control: Fix homepage and upload to unstable
Enable reproducible builds
Upload to unstable
Charles Plessy (164):
Imported Upstream version 2.8.3
# Added a debian directory.
# Add missing bin and obj directories if needed.
# Patch to find gzstream.h during Debian package building.
# Added a notice that the package is a draft.
# Added VCS URLs.
Imported Upstream version 2.9.0
Merge commit 'upstream/2.9.0'
# Upstream version 2.9.0.
# Install the bedtools genome files in /usr/share/bedtools/genomes.
# Working watch file.
Imported Upstream version 2.10.0
Merge commit 'upstream/2.10.0'
# Version 2.10.0.
# Notification that the upstream sources are repacked.
Imported Upstream version 2.10.1
Merge commit 'upstream/2.10.1'
# New upstream release.
# Use debhelper 8.
# Document copyrights.
# Team maintainance.
# Added a get-orig-source rule that does the repacking.
# New upstream release.
Imported Upstream version 2.11.0
Merge commit 'upstream/2.11.0'
# curl convenience copy removed upstream.
# Upstream Makefile now creates missing directories.
# README is now in reStructuredText.
# Build-depend on zlib1g-dev.
# Build depend on git and quilt to play with format 3.0 (git).
# New upstream release.
Imported Upstream version 2.11.1
Merge commit 'upstream/2.11.1'
# New upstream release.
Imported Upstream version 2.11.2
Merge commit 'upstream/2.11.2'
# Use RELEASE_HISTORY as the changelog.
# Using format 3.0 (quilt), hoping to upload soon.
Imported Upstream version 2.12.0
Merge commit 'upstream/2.12.0'
New upstream release with 4 new copyright notices.
Finished copyright and license review. Thanks to Aaron Quinlan for the hints.
Added config file to make obvious that git-buildpackage is used.
Complies with Policy 3.9.2.
Uploaded bedtools_2.12.0-1_amd64.changes to Debian.
Work in progress; see git log.
Compress source and binary packages with xz.
Suggest filo for the groupBy command.
Imported Upstream version 2.13.0
Merge commit 'upstream/2.13.0'
New upstream release (no new copyright holder nor license statement).
Mangle debian/watch download URL as it does not contain ‘http’ anymore.
Simplified repacking as upstream tarballs do not contain ‘*/*DS_Store’ files anymore.
Merge commit 'upstream/2.13.1'
Imported Upstream version 2.13.1
New upstream release (no new copyright holder nor license statement).
Uploading bedtools_2.13.1-1.
Imported Upstream version 2.13.2
Merge commit 'upstream/2.13.2'
Uploading bedtools_2.13.2-1_amd64.changes.
Merge commit 'upstream/2.13.3'
Imported Upstream version 2.13.3
New upstream release (no new copyright holder nor license statement).
Uploading bedtools_2.13.3-1_amd64.changes.
Package from Ubuntu easing upgrade to next LTS release.
Reverted control to Debian maintainer, preparing next update.
Upstream tar archives are now cleaned from the ‘._*’ files.
Imported Upstream version 2.13.4
Merge commit 'upstream/2.13.4'
New upstream release; no new copyright notice nor license statement.
Configure git-dch.
Uploading bedtools_2.13.4-1_amd64.changes.
Imported Upstream version 2.14.1
Merge commit 'upstream/2.14.1'
New upstream release. No new copyright holder nor license statement.
Imported Upstream version 2.14.2
Merge commit 'upstream/2.14.2'
Bugfix release ; no copyright nor license change.
Imported Upstream version 2.14.3
Merge commit 'upstream/2.14.3'
Bugfix release ; no copyright nor license change.
Imported Upstream version 2.15.0
Merge commit 'upstream/2.15.0'
New upstream release; no new copyright holder nor license notice.
Build-depend on python because of scripts/makeBashScripts.py.
Removed the /usr/bin/groupBy wrapper, as groupBy is also distributed by the filo package.
Uploading bedtools_2.15.0-1_amd64.changes.
Imported Upstream version 2.16.1
Merge commit 'upstream/2.16.1'
New license term found for a file in version 2.16.1.
Corrected, updated and normalised Debian copyright file with “cme fix dpkg-copyright”.
Conforms to Debian Policy 3.9.3.
Meta data about BEDTools, see http://wiki.debian.org/UpstreamMetadata.
Verbose Debhelper.
bedtools (2.16.1-1) unstable; urgency=low
Imported Upstream version 2.16.2
Merge tag 'upstream/2.16.2'
New upstream release; no new copyright nor license notices.
Attempting to document BEDTools license as a whole.
New upstream release updating regression tests (only), but one is still failing.
Imported Upstream version 2.17.0
Merge tag 'upstream/2.17.0'
Found new copyright and license notices in the 2.17.0 version.
Stopped claiming a copyright on the packaging.
Removed Pre-Depends: dpkg (>= 1.15.6) now that Ubuntu does not need it anymore.
Minor adjustment of the Vcs-Git URL.
Conforms with Policy 3.9.4.
Use Debhelper 9.
Upgrade in progress.
Distribute the test suite.
Removed DM-Upload-Allowed field.
Bash completion for BEDTools.
bedtools (2.17.0-1) unstable; urgency=low
Source control file normalised with config-model-edit.
Corrected a typo in the long description.
Work in progress.
Watch GitHub at https://github.com/arq5x/bedtools2.
Work in progress.
Imported Upstream version 2.19.0
Merge tag 'upstream/2.19.0'
New upstream releases; no new copyright nor license notice.
Merge branch 'master' into debian/unstable
Follow the layout of the upstream repository.
Moved to GitHub.
README file changed format.
Emulate source format 1.0 in the format 3.0 (quilt).
Canonical VCS URLs.
Conforms with Policy 3.9.5.
Merge branch 'master' into debian/unstable
bedtools (2.19.0-1) unstable; urgency=low
Merge tag 'v2.19.1' into debian/unstable
New upstream release; no new copyright nor license statements.
Merge branch 'debian/unstable' of git+ssh://git.debian.org/git/debian-med/bedtools into debian/unstable
Merge branch 'suggestion-for-testsuite' into debian/unstable
Create autopkgtest testsuite and a new package bedtools-test.
Removed exception of compression now that test files have been moved.
Update path, correct license short name.
bedtools (2.19.1-1) unstable; urgency=medium
Merge branch 'master' into debian/unstable
Merge tag 'v2.20.1' into debian/unstable
New upstream release; no new license no copyright statement.
Merge tag 'v2.21.0' into debian/unstable
Merge branch 'master' into debian/unstable
New upstream release; no new copyright nor license notices.
bedtools (2.21.0-1) unstable; urgency=medium
Merge tag 'v2.22.1' into debian/unstable
New upstream release, no new copyright nor license notice.
Normalised with cme fix.
Conforms to Policy 3.9.6.
Provisional changelog.
Restore the License field in the header: Lintian is wrong.
Merge tag 'v2.25.0' into debian/unstable
Merged new upstream release.
Remove patch applied upstream.
No new copyright nor license notice.
bedtools (2.25.0-1) unstable; urgency=medium
Ensure the architecture-independent package can be built separately.
Current changelog entry.
Merge tag 'v2.26.0' into debian/unstable
New upstream release, problem with non-free material.
Call the license "MIT" like Upstream and everybody else do.
Update following gbp's warning message.
Sync with upstream repo at commit 6bf23c
bedtools (2.26.0+dfsg-3) unstable; urgency=medium
James McCoy (1):
Move debian/upstream to debian/upstream/metadata
-----------------------------------------------------------------------
This annotated tag includes the following new commits:
new c1d4cfc Call the license "MIT" like Upstream and everybody else do.
new 1c5cd9c Update following gbp's warning message.
new 1d31cd1 Sync with upstream repo at commit 6bf23c
new 7b6f845 bedtools (2.26.0+dfsg-3) unstable; urgency=medium
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
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