[med-svn] [ruby-rgfa] 03/09: Merge tag 'upstream/1.3'

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository ruby-rgfa.

commit 88458af668fdf7f91c52418ad91b214f36000b46
Merge: c5f5bb3 95b8e41
Author: Sascha Steinbiss <satta at debian.org>
Date:   Mon Sep 26 20:39:00 2016 +0000

    Merge tag 'upstream/1.3'
    
    Upstream version 1.3

 .gitignore                                         |   2 +
 .travis.yml                                        |   4 +
 CHANGELOG                                          |  19 +++
 README.md                                          |  26 ++++-
 Rakefile                                           |  15 ++-
 bin/{gfadiff.rb => gfadiff}                        |   0
 bin/{rgfa-findcrisprs.rb => rgfa-findcrisprs}      |   0
 bin/{rgfa-mergelinear.rb => rgfa-mergelinear}      |   0
 bin/{rgfa-simdebruijn.rb => rgfa-simdebruijn}      |   0
 ...rgfa-cheatsheet-1.2.tex => rgfa-cheatsheet.tex} |  37 +++---
 lib/rgfa.rb                                        |   2 +-
 lib/rgfa/cigar.rb                                  |  11 +-
 lib/rgfa/field_parser.rb                           |   8 +-
 lib/rgfa/field_validator.rb                        |  14 +++
 lib/rgfa/line.rb                                   |   8 +-
 lib/rgfa/line/comment.rb                           |  13 +++
 lib/rgfa/line/containment.rb                       |  16 ++-
 lib/rgfa/line/link.rb                              | 127 ++++++++++-----------
 lib/rgfa/line/path.rb                              |  30 ++---
 lib/rgfa/line/segment.rb                           |   6 +-
 lib/rgfa/lines.rb                                  |   3 +
 lib/rgfa/links.rb                                  |   2 +-
 lib/rgfa/segment_ends_path.rb                      |   2 +
 pdfdoc/{cover.html => cover.html.erb}              |   2 +-
 rgfa.gemspec                                       |  12 +-
 test/test_rgfa_line_comment.rb                     |  13 +++
 test/test_rgfa_line_creators.rb                    |  10 ++
 test/test_rgfa_line_path.rb                        |   2 +-
 test/test_rgfa_line_segment.rb                     |  12 ++
 29 files changed, 259 insertions(+), 137 deletions(-)

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