[med-svn] [beagle] branch master updated (15f1acf -> 52525a0)

[Dylan Aïssi]

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bob.dybian-guest pushed a change to branch master
in repository beagle.

      from  15f1acf   Remove lintian-overrides not need anymore
      adds  3db72fd   Imported Upstream version 4.1~160616-7e4+dfsg
       new  6f5d56f   Imported Upstream version 4.1~160727.86a+dfsg
       new  52525a0   Merge tag 'upstream/4.1_160727.86a+dfsg'

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 blbutil/Utilities.java     |   4 +-
 dag/MergeableDagLevel.java |   8 +--
 main/Main.java             |   6 +--
 sample/LSHapBaum.java      | 126 ++++++++++++++++++---------------------------
 vcf/VcfRecBuilder.java     | 118 ++++++++++++++++++++----------------------
 vcf/VcfWriter.java         |   2 +-
 6 files changed, 117 insertions(+), 147 deletions(-)

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