[med-svn] [bagpipe] 03/06: Normalised packaging and moved citation from long description to upstream/metadata

[Andreas Tille]

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tille pushed a commit to branch master
in repository bagpipe.

commit 37b5a3b5d47f8774337cd72f64b83e3032dac8ae
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jan 3 08:17:53 2017 +0000

    Normalised packaging and moved citation from long description to upstream/metadata
---
 debian/compat            |  2 +-
 debian/control           | 26 ++++++++++----------------
 debian/copyright         |  2 +-
 debian/upstream/metadata | 22 ++++++++++++++++++++++
 4 files changed, 34 insertions(+), 18 deletions(-)

diff --git a/debian/compat b/debian/compat
index ec63514..f599e28 100644
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-9
+10
diff --git a/debian/control b/debian/control
index 6e0f87e..1df20f2 100644
--- a/debian/control
+++ b/debian/control
@@ -1,17 +1,20 @@
 Source: bagpipe
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Thorsten Alteholz <debian at alteholz.de>
-Build-Depends: debhelper (>= 9)
-Standards-Version: 3.9.4
+Section: science
+Priority: optional
+Build-Depends: debhelper (>= 10)
+Standards-Version: 3.9.8
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/bagpipe/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/bagpipe/trunk/
 Homepage: http://valdarlab.unc.edu/software/bagpipe/_build/html/bagpipe.html
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bagpipe/trunk/
-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/bagpipe/trunk/
 
 Package: bagpipe
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${perl:Depends}, r-other-valdar-bagpipe.backend
+Depends: ${shlibs:Depends},
+         ${misc:Depends},
+         ${perl:Depends},
+         r-other-valdar-bagpipe.backend
 Description: genomewide LD mapping
  Bagpipe is a program for performing genomewide linkage disequilibrium 
  mapping of quantitative trait loci in populations whose genome structure 
@@ -34,12 +37,3 @@ Description: genomewide LD mapping
     heterogeneous stock mice in [Valdar06].
   * Bagpipe is experimental software, is provided free of charge subject to 
     copyleft restrictions, and comes with no guarantees whatsoever.
- .
- [Mott00] Mott R, Talbot CJ, Turri MG, Collins AC, Flint, J (2000) 
- A method for fine mapping quantitative trait loci in outbred animal 
- stocks. Proceedings of the National Academy of Sciences of the United 
- States of America, 97(23), 12649-54.
- [Valdar06] Valdar W, Solberg LC, Gaugier D, Burnett S, Klenerman P, 
- Cookson WO, Taylor M, Rawlins JNP, Mott R, Flint J (2006) 
- Genome-wide genetic association of complex traits in outbred mice. 
- Nature Genetics 38(8):879-87. PMID:16832355
diff --git a/debian/copyright b/debian/copyright
index 9a1044f..91260ff 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,4 +1,4 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: bagpipe
 Source:  http://valdarlab.unc.edu/software/bagpipe/_build/html/bagpipe.html
 
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
new file mode 100644
index 0000000..ee49be8
--- /dev/null
+++ b/debian/upstream/metadata
@@ -0,0 +1,22 @@
+Reference:
+ - Author: Richard Mott and Christopher J. Talbot and Maria G. Turri and Allan C. Collins and Jonathan Flint
+   Title: "A method for fine mapping quantitative trait loci in outbred animal stocks"
+   Journal: Proc Natl Acad Sci U S A.
+   Year:  2000
+   Volume: 97
+   Number: 23
+   Pages: 12649-54
+   DOI: 10.1073/pnas.230304397 
+   PMID: 11050180
+   URL: http://www.pnas.org/content/97/23/12649
+ - Author: William Valdar and Leah C Solberg and Dominique Gauguier and Stephanie Burnett and Paul Klenerman and William O Cookson and Martin S Taylor and J Nicholas P Rawlins and Richard Mott and Jonathan Flint
+   Title: "Genome-wide genetic association of complex traits in heterogeneous stock mice"
+   Journal: Nature Genetic
+   Year: 2006
+   Volume: 38
+   Number: 8
+   Pages: 879-87
+   DOI: 10.1038/ng1840
+   PMID: 16832355
+   URL: http://www.nature.com/ng/journal/v38/n8/full/ng1840.html
+   eprint: http://www.nature.com/ng/journal/v38/n8/pdf/ng1840.pdf

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