[med-svn] [plato] 09/12: New upstream version 2.0.0
Andreas Tille
tille at debian.org
Mon Dec 18 19:43:40 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository plato.
commit a41f1c858c11057f0a1d91ff6757fafa210aa2b6
Author: Andreas Tille <tille at debian.org>
Date: Mon Dec 18 20:40:26 2017 +0100
New upstream version 2.0.0
---
CHANGELOG | 50 +
debian/docs => CREATED | 0
MPIProcess.cpp | 154 +
MPIProcess.h | 68 +
MPIProcessFactory.cpp | 41 +
MPIProcessFactory.h | 51 +
Makefile.am | 182 +
Makefile.in | 1336 ++
Process.cpp | 31 +
Process.h | 68 +
ProcessFactory.cpp | 23 +
ProcessFactory.h | 37 +
README.txt | 25 +
aclocal.m4 | 1126 ++
config.guess | 1501 ++
config.h.in | 349 +
config.sub | 1705 ++
configure | 27044 ++++++++++++++++++++++++++
configure.ac | 49 +
debian/changelog | 5 -
debian/compat | 1 -
debian/control | 62 -
debian/copyright | 25 -
debian/plato.install | 1 -
debian/rules | 13 -
debian/source/format | 1 -
debian/upstream/metadata | 10 -
debian/watch | 7 -
depcomp | 630 +
doc/MPI_API.odt | Bin 0 -> 29562 bytes
doc/manual.odt | Bin 0 -> 39833 bytes
install-sh | 520 +
ltmain.sh | 8406 ++++++++
main.cpp | 1313 ++
main.h | 43 +
make/m4/ax_boost_base.m4 | 237 +
make/m4/ax_boost_lib.m4 | 104 +
make/m4/ax_check_enable_debug.m4 | 98 +
make/m4/ax_check_enable_loki.m4 | 15 +
make/m4/ax_compare_version.m4 | 177 +
make/m4/ax_freetype_base.m4 | 123 +
make/m4/ax_path_gsl.m4 | 164 +
make/m4/ax_prog_cc_mpi.m4 | 171 +
make/m4/ax_prog_cxx_mpi.m4 | 178 +
make/m4/ax_prog_python_version.m4 | 71 +
make/m4/ax_python_module.m4 | 49 +
make/m4/ax_soci_core.m4 | 239 +
make/m4/ax_soci_sqlite.m4 | 280 +
make/m4/libtool.m4 | 7360 +++++++
make/m4/ltoptions.m4 | 368 +
make/m4/ltsugar.m4 | 123 +
make/m4/ltversion.m4 | 23 +
make/m4/lt~obsolete.m4 | 92 +
make/m4/rl_configure.m4 | 136 +
method_lib/Makefile.am | 317 +
method_lib/Makefile.in | 1009 +
method_lib/analysis/Correction.cpp | 117 +
method_lib/analysis/Correction.h | 89 +
method_lib/analysis/Encoding.cpp | 79 +
method_lib/analysis/Encoding.h | 45 +
method_lib/analysis/Regression.cpp | 2884 +++
method_lib/analysis/Regression.h | 1147 ++
method_lib/data/BiallelicSample.cpp | 103 +
method_lib/data/BiallelicSample.h | 43 +
method_lib/data/DataSet.cpp | 233 +
method_lib/data/DataSet.h | 228 +
debian/docs => method_lib/data/Family.cpp | 0
method_lib/data/Family.h | 96 +
method_lib/data/Marker.cpp | 118 +
method_lib/data/Marker.h | 170 +
method_lib/data/PhasedBiallelicSample.cpp | 77 +
method_lib/data/PhasedBiallelicSample.h | 42 +
method_lib/data/PhasedPolyallelicSample.cpp | 58 +
method_lib/data/PhasedPolyallelicSample.h | 39 +
method_lib/data/PolyallelicSample.cpp | 71 +
method_lib/data/PolyallelicSample.h | 38 +
method_lib/data/Sample.cpp | 57 +
method_lib/data/Sample.h | 129 +
method_lib/util/CommandLineParser.h | 347 +
method_lib/util/DataLoader.cpp | 1340 ++
method_lib/util/DataLoader.h | 184 +
method_lib/util/GSLUtils.cpp | 105 +
method_lib/util/GSLUtils.h | 43 +
method_lib/util/ICompressedFile.cpp | 61 +
method_lib/util/ICompressedFile.h | 45 +
method_lib/util/InputManager.cpp | 76 +
method_lib/util/InputManager.h | 91 +
method_lib/util/Logger.cpp | 51 +
method_lib/util/Logger.h | 53 +
method_lib/util/MPIUtils.cpp | 16 +
method_lib/util/MPIUtils.h | 53 +
method_lib/util/Missing.cpp | 70 +
method_lib/util/Missing.h | 29 +
method_lib/util/OutputPLINK.cpp | 40 +
method_lib/util/OutputPLINK.h | 37 +
method_lib/util/ThreadPool.cpp | 110 +
method_lib/util/ThreadPool.h | 68 +
missing | 376 +
process/AlleleFreqFilter.cpp | 64 +
process/AlleleFreqFilter.h | 39 +
process/AutoRegression.cpp | 212 +
process/AutoRegression.h | 111 +
process/BatchProcess.cpp | 95 +
process/BatchProcess.h | 39 +
process/ConcordanceProcess.cpp | 324 +
process/ConcordanceProcess.h | 63 +
process/ExampleModule.cpp | 58 +
process/ExampleModule.h | 36 +
process/InputProcess.cpp | 33 +
process/InputProcess.h | 37 +
process/LinearRegression.cpp | 283 +
process/LinearRegression.h | 52 +
process/LogisticRegression.cpp | 475 +
process/LogisticRegression.h | 101 +
process/MarkerMissingFilter.cpp | 62 +
process/MarkerMissingFilter.h | 37 +
process/OutputBED.cpp | 192 +
process/OutputBED.h | 47 +
process/OutputBeagle.cpp | 200 +
process/OutputBeagle.h | 95 +
process/OutputEigenstrat.cpp | 102 +
process/OutputEigenstrat.h | 40 +
process/OutputPED.cpp | 105 +
process/OutputPED.h | 40 +
process/OutputTPED.cpp | 106 +
process/OutputTPED.h | 40 +
process/RecodeAlleles.cpp | 143 +
process/RecodeAlleles.h | 40 +
process/SampleMissingFilter.cpp | 60 +
process/SampleMissingFilter.h | 37 +
process/TraitLoader.cpp | 136 +
process/TraitLoader.h | 40 +
process/TraitMissingFilter.cpp | 60 +
process/TraitMissingFilter.h | 37 +
134 files changed, 68785 insertions(+), 125 deletions(-)
diff --git a/CHANGELOG b/CHANGELOG
new file mode 100644
index 0000000..e1a1942
--- /dev/null
+++ b/CHANGELOG
@@ -0,0 +1,50 @@
+== Version 1.2.2 ==
+
+Bug Fixes:
+
+1. Fixed error in reading plink binary format files for case where the files were not in chromosomal position order.
+
+== Version 1.2.1 ==
+
+New Feature:
+1. Added GXE regression testing in interaction method.
+
+Bug Fixes:
+1. Fixed memory leak in logistic regression.
+2. Fixed crash when using named phenotypes from traits file in logistic regression.
+3. Output columns in logistic regression now align propery with headers.
+
+Compilation Fix:
+1. Changed macro for malloc.h inclusion to HAVE_MALLOC_H for compiling on systems without malloc.h ( such as Macs ).
+
+== Version 1.2 ==
+
+New Features:
+
+1. Added -update-ids command line option. Takes an input file of the format: OldFamID OldIndID NewFamID NewIndID The ids are updated prior to performing a formatting step (output-ped, output-bin, etc
+2. User can specify covariates to include in linear regression with the -covars-name and -covars-number parameters.
+3. MDROutput process can now use alternative phenotype provided by trait-file
+4 Added a regression interaction analysis. It can be accessed using the batch command 'interaction' and can accept a bio-snp-file as epistasis does to run pairwise regression analyses.
+
+Bug Fixes:
+
+1. In FST calculation checks that the number of groups specified doesn't equal the number of samples.
+2. Replaced code to filter output based on -epi-alpha1 in Epistasis module.
+3. Added markerGreater(...) method to be used as comparator in InputFilter class sorting. This was a fix for an issue with -excMarkers flag not excluding all markers in the locus input file.
+4. Fixed ExcludeLocusFilter(...) method in InputFilter class to make sure all markers in the input locus file are excluded regardless of order.
+5. Changed to catch MethodException reference so messages are displayed correctly.
+6. In Sample::addMicroSat and MarkerGenoEff::calcOne, changed map access from .at to [] because .at throws an exception when key doesn't exist and in this case, we are adding a new key/value pair to the map
+7. Fixed Helpers::removeBeginWhiteSpace to properly remove whitespace at beginning of string
+8. Added warning to BINOutput when trying to include a microsatellite marker in a plink output file
+9. For LGEN file input, fixed missing data problem so that any marker not appearing in the input file would be set as missing for processing.
+10. For Eigenstrat output, corrected 0 and 2 output for alleles in the ancestry map file option.
+
+Output:
+1. Linear Regression now outputs the number of covariates included in the model
+
+Style/Format/Other:
+1. Many lines of commented out code removed.
+2. Moved opening braces to separate lines
+3. Changed STL map and vector access from [] operator to .at function.
+4. Cast size() function of vectors as ints to remove compiler warnings
+5. Removed R dependency and MARS filtering techniques
diff --git a/debian/docs b/CREATED
similarity index 100%
copy from debian/docs
copy to CREATED
diff --git a/MPIProcess.cpp b/MPIProcess.cpp
new file mode 100644
index 0000000..bd64cf2
--- /dev/null
+++ b/MPIProcess.cpp
@@ -0,0 +1,154 @@
+/*
+ * MPIProcess.cpp
+ *
+ * Created on: Jul 8, 2014
+ * Author: jrw32
+ */
+
+#include "MPIProcess.h"
+
+#include "util/Logger.h"
+#include "util/MPIUtils.h"
+
+#include "config.h"
+
+#ifdef HAVE_CXX_MPI
+#include <mpi.h>
+#endif
+
+using std::pair;
+
+namespace PLATO{
+
+MPIProcess::MPIProcess() : n_procs(1), _mpi_threads(1), _tag(0) {
+#ifdef HAVE_CXX_MPI
+ MPI_Comm_size(MPI_COMM_WORLD, &n_procs);
+#endif
+}
+
+void MPIProcess::sendMPI(const pair<unsigned int, const char*>& nextval){
+ // Note: if we don't have MPI, you REALLY shouldn't be here!
+#ifdef HAVE_CXX_MPI
+ if(nextval.second != 0){
+ int recv = _idle_queue.front();
+ _idle_queue.pop_front();
+ //std::cout << "Sending " << nextval.first << " bytes to " << recv << std::endl;
+ MPI_Send(const_cast<char*>(nextval.second), nextval.first, MPI_CHAR, recv, _tag, MPI_COMM_WORLD);
+ }
+#endif
+}
+
+void MPIProcess::sendAll(unsigned int bufsz, const char* buf) const{
+#ifdef HAVE_CXX_MPI
+ MPI_Request req_array[n_procs - 1];
+ MPI_Status stat_array[n_procs - 1];
+
+ for(int i=1; i<n_procs; i++){
+ MPI_Isend(const_cast<char*>(buf), bufsz, MPI_CHAR, i, _tag, MPI_COMM_WORLD, &req_array[i-1]);
+ }
+
+ MPI_Waitall(n_procs - 1, req_array, stat_array);
+#endif
+}
+
+void MPIProcess::collect(){
+
+#ifdef HAVE_CXX_MPI
+ MPI_Status m_stat;
+ char* buf;
+ int bufsz;
+
+ while(_idle_queue.size() < static_cast<unsigned int>(n_procs - 1)*_mpi_threads){
+ MPI_Probe(MPI_ANY_SOURCE, MPI_ANY_TAG, MPI_COMM_WORLD, &m_stat);
+ MPI_Get_count(&m_stat, MPI_CHAR, &bufsz);
+ buf = new char[bufsz];
+
+ MPI_Recv(buf, bufsz, MPI_CHAR, m_stat.MPI_SOURCE, _tag, MPI_COMM_WORLD, &m_stat);
+ _idle_queue.push_back(m_stat.MPI_SOURCE);
+ processResponse(bufsz, buf);
+ delete[] buf;
+ }
+#endif
+}
+
+void MPIProcess::processMPI(unsigned int threads){
+
+ // make sure to have at least 1 thread per core!
+ _mpi_threads = threads < 1 ? 1 : threads;
+ // However, if we aren't threadsafe, force to 1 thread!
+ if(!Utility::MPIUtils::threadsafe_mpi){
+ _mpi_threads = 1;
+ }
+
+ pair<unsigned int, const char*> nextval = nextQuery();
+
+#ifdef HAVE_CXX_MPI
+ int n_procs;
+ MPI_Comm_size(MPI_COMM_WORLD, &n_procs);
+
+ // set up the list of processors currently idle
+ for(unsigned int i=0; i < (n_procs - 1) * _mpi_threads; i++){
+ // we're going to initially try to round-robin everything
+ // i.e. 3 threads on 2 nodes should have the initial queue: [1,2,1,2,1,2]
+ _idle_queue.push_back(1 + (i % (n_procs - 1)));
+ }
+
+ char * buf;
+ int bufsz;
+ MPI_Status m_stat;
+ while(nextval.first != 0){
+ // send all the messages I can:
+ while(nextval.second != 0 && !_idle_queue.empty()){
+ sendMPI(nextval);
+ delete[] nextval.second;
+ nextval = nextQuery();
+ }
+
+ // at this point, I'm in need of a response...
+ MPI_Probe(MPI_ANY_SOURCE, MPI_ANY_TAG, MPI_COMM_WORLD, &m_stat);
+ MPI_Get_count(&m_stat, MPI_CHAR, &bufsz);
+ buf = new char[bufsz];
+
+ MPI_Recv(buf, bufsz, MPI_CHAR, m_stat.MPI_SOURCE, MPI_ANY_TAG, MPI_COMM_WORLD, &m_stat);
+ _idle_queue.push_back(m_stat.MPI_SOURCE);
+
+ processResponse(bufsz, buf);
+ delete[] buf;
+
+ // if I was waiting on a response, see if I have a new query to send
+ if(nextval.second == 0){
+ nextval = nextQuery();
+ }
+
+ }
+
+ // If we're here, we have nothing more to process, so please wait for all
+ // outstanding responses
+ collect();
+
+
+#else
+ Utility::Logger::log_err("WARNING: MPI requested, but no MPI found during compilation!");
+ pair<unsigned int, const char*> calc_val;
+ std::deque<pair<unsigned int, const char*> > resp_queue;
+ boost::mutex resp_mutex;
+
+ while(nextval.first != 0){
+ if(nextval.second != 0){
+ MPIProcessFactory::getFactory().calculate(_tag, nextval.first, nextval.second, resp_queue, resp_mutex);
+ delete[] nextval.second;
+ while(resp_queue.size() > 0){
+ calc_val = resp_queue.front();
+ resp_queue.pop_front();
+ processResponse(calc_val.first, calc_val.second);
+ delete[] calc_val.second;
+ }
+
+ }
+ nextval = nextQuery();
+ }
+
+#endif
+}
+
+}
diff --git a/MPIProcess.h b/MPIProcess.h
new file mode 100644
index 0000000..29eaef2
--- /dev/null
+++ b/MPIProcess.h
@@ -0,0 +1,68 @@
+/*
+ * MPIProcess.h
+ *
+ * Created on: Jul 7, 2014
+ * Author: jrw32
+ */
+
+#ifndef MPIPROCESS_H
+#define MPIPROCESS_H
+
+#include <string>
+#include <utility>
+#include <deque>
+
+#include "MPIProcessFactory.h"
+
+namespace PLATO{
+
+class MPIProcess {
+protected:
+ MPIProcess();
+
+protected:
+ virtual void processResponse(unsigned int bufsz, const char* buf) = 0;
+ virtual std::pair<unsigned int, const char*> nextQuery() = 0;
+
+protected:
+ virtual const std::string& getMPIName() const = 0;
+ void processMPI(unsigned int threads);
+ // waits for all currently running models to return
+ void collect();
+ void sendAll(unsigned int, const char*) const;
+
+private:
+ void sendMPI(const std::pair<unsigned int, const char*>& query);
+ std::deque<int> _idle_queue;
+ int n_procs;
+ //! Number of cores per node.
+ unsigned int _mpi_threads;
+
+protected:
+ int _tag;
+};
+
+template <class T>
+class MPIProcessImpl : virtual public MPIProcess{
+
+protected:
+ MPIProcessImpl(const std::string& name) : _mpi_name(name) {
+ _tag = MPIProcessFactory::getFactory().getKeyPos(_mpi_name);
+ }
+
+protected:
+ static const std::string& registerMPI(const std::string& key_in);
+ virtual const std::string& getMPIName() const { return _mpi_name;}
+
+private:
+ std::string _mpi_name;
+};
+
+template<class T>
+const std::string& MPIProcessImpl<T>::registerMPI(const std::string& key_in){
+ return MPIProcessFactory::getFactory().RegisterMPIProcess(key_in, &T::calculate_MPI);
+}
+
+
+}
+#endif /* MPIPROCESS_H_ */
diff --git a/MPIProcessFactory.cpp b/MPIProcessFactory.cpp
new file mode 100644
index 0000000..6b68898
--- /dev/null
+++ b/MPIProcessFactory.cpp
@@ -0,0 +1,41 @@
+/*
+ * MPIProcessFactory.cpp
+ *
+ * Created on: Jul 7, 2014
+ * Author: jrw32
+ */
+
+#include "MPIProcessFactory.h"
+
+#include <algorithm>
+
+using std::map;
+using std::pair;
+using std::string;
+
+namespace PLATO{
+
+const string& MPIProcessFactory::RegisterMPIProcess(const string& key, calcFunc* ptr){
+ calc_map[key] = ptr;
+ return key;
+}
+
+void MPIProcessFactory::calculate(unsigned int key_pos,
+ unsigned int bufsz, const char* buf,
+ std::deque<std::pair<unsigned int, const char*> >& resp_queue, boost::mutex& resp_mutex){
+ map<string, calcFunc*>::const_iterator fn_itr = calc_map.begin();
+ unsigned int i=0;
+ while(fn_itr != calc_map.end() && ++i < key_pos){
+ ++fn_itr;
+ }
+ if(fn_itr != calc_map.end()){
+ (*fn_itr).second(bufsz, buf, resp_queue, resp_mutex, cv);
+ }
+}
+
+unsigned int MPIProcessFactory::getKeyPos(const string& key){
+ map<const string, calcFunc*>::iterator fn_itr = calc_map.find(key);
+ return (fn_itr == calc_map.end()) ? 0 : (std::distance(calc_map.begin(), fn_itr) + 1);
+}
+
+}
diff --git a/MPIProcessFactory.h b/MPIProcessFactory.h
new file mode 100644
index 0000000..6d9de1d
--- /dev/null
+++ b/MPIProcessFactory.h
@@ -0,0 +1,51 @@
+/*
+ * MPIProcessFactory.h
+ *
+ * Created on: Jul 7, 2014
+ * Author: jrw32
+ */
+
+#ifndef MPIPROCESSFACTORY_H
+#define MPIPROCESSFACTORY_H
+
+#include <utility>
+#include <map>
+#include <string>
+#include <deque>
+#include <utility>
+#include <boost/thread/mutex.hpp>
+#include <boost/thread/condition_variable.hpp>
+
+typedef void (calcFunc)(unsigned int, const char*, std::deque<std::pair<unsigned int, const char*> >&, boost::mutex&, boost::condition_variable&);
+
+namespace PLATO{
+
+class MPIProcessFactory{
+
+private:
+ MPIProcessFactory(){}
+ MPIProcessFactory(const MPIProcessFactory&);
+ MPIProcessFactory& operator=(const MPIProcessFactory&);
+
+public:
+ const std::string& RegisterMPIProcess(const std::string& key, calcFunc* ptr);
+
+ void calculate(unsigned int key_pos, unsigned int bufsz, const char* buf, std::deque<std::pair<unsigned int, const char*> >&, boost::mutex&);
+ unsigned int getKeyPos(const std::string& key);
+ boost::condition_variable& getConditionVar() { return cv; }
+
+ static MPIProcessFactory& getFactory(){static MPIProcessFactory f; return f;}
+
+private:
+ std::map<const std::string, calcFunc*> calc_map;
+ //! This condition variable is set when a calculate finishes (but it's up to the user to do so!)
+ boost::condition_variable cv;
+
+};
+
+
+
+
+
+}
+#endif /* MPIPROCESSFACTORY_H */
diff --git a/Makefile.am b/Makefile.am
new file mode 100644
index 0000000..29884f2
--- /dev/null
+++ b/Makefile.am
@@ -0,0 +1,182 @@
+ACLOCAL_AMFLAGS= -I ./make/m4
+
+SUBDIRS=method_lib
+
+EXTRA_DIST=doc/manual.odt \
+doc/MPI_API.odt \
+process/ExampleModule.h \
+process/ExampleModule.cpp \
+CREATED \
+CHANGELOG \
+README.txt
+
+CLEANFILES=doc/manual.odt \
+doc/MPI_API.odt \
+process/ExampleModule.h \
+process/ExampleModule.cpp \
+CREATED \
+CHANGELOG \
+README.txt
+
+dist-hook:
+ chmod u+w $(distdir)/CREATED
+ echo "Distribution date: `date`" > CREATED
+
+# This is here to prevent installation of LOKI during a distcheck
+DISTCHECK_CONFIGURE_FLAGS=--disable-loki
+
+AM_CPPFLAGS=$(BOOST_CPPFLAGS) -I$(top_srcdir)/method_lib
+AM_LDFLAGS=$(BOOST_LDFLAGS)
+
+bin_PROGRAMS=plato
+
+plato_SOURCES= Process.cpp \
+Process.h \
+main.cpp \
+main.h \
+ProcessFactory.cpp \
+ProcessFactory.h \
+MPIProcess.h \
+MPIProcess.cpp \
+MPIProcessFactory.h \
+MPIProcessFactory.cpp \
+process/InputProcess.cpp \
+process/InputProcess.h \
+process/BatchProcess.cpp \
+process/BatchProcess.h \
+process/OutputPED.cpp \
+process/OutputPED.h \
+process/OutputBED.cpp \
+process/OutputBED.h \
+process/OutputTPED.cpp \
+process/OutputTPED.h \
+process/TraitLoader.h \
+process/TraitLoader.cpp \
+process/LogisticRegression.h \
+process/LogisticRegression.cpp \
+process/LinearRegression.h \
+process/LinearRegression.cpp \
+process/SampleMissingFilter.h \
+process/SampleMissingFilter.cpp \
+process/MarkerMissingFilter.h \
+process/MarkerMissingFilter.cpp \
+process/AlleleFreqFilter.h \
+process/AlleleFreqFilter.cpp \
+process/TraitMissingFilter.h \
+process/TraitMissingFilter.cpp \
+process/ConcordanceProcess.h \
+process/ConcordanceProcess.cpp \
+process/OutputEigenstrat.h \
+process/OutputEigenstrat.cpp \
+process/OutputBeagle.h \
+process/OutputBeagle.cpp \
+process/RecodeAlleles.h \
+process/RecodeAlleles.cpp \
+process/AutoRegression.h \
+process/AutoRegression.cpp
+
+plato_LDADD=method_lib/libmethods.la $(BOOST_THREAD_LIB) \
+$(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB) $(BOOST_REGEX_LIB) \
+$(BOOST_SERIALIZATION_LIB)
+
+
+############################################################################
+# Everything below this line is from Plato 1.x, before the rewrite
+############################################################################
+
+orig_plato_src = cdflib.h \
+dcdflib.cpp \
+ipmpar.c \
+Finalize.cc \
+Finalize.h \
+process/PercentByFamily.cc \
+process/PercentByFamily.h \
+process/ProcessAlleleFrequency.cc \
+process/ProcessAlleleFrequency.h \
+process/ProcessBEAGLEOutput.cc \
+process/ProcessBEAGLEOutput.h \
+process/ProcessBINOutput.cc \
+process/ProcessBINOutput.h \
+process/ProcessCaConChisq.cc \
+process/ProcessCaConChisq.h \
+Process.cc \
+process/ProcessClusterMissing.cc \
+process/ProcessClusterMissing.h \
+process/ProcessCMH.cc \
+process/ProcessCMH.h \
+process/ProcessConcordance.cc \
+process/ProcessConcordance.h \
+process/ProcessDeletions.cc \
+process/ProcessDeletions.h \
+process/ProcessEigenstratOutput.cc \
+process/ProcessEigenstratOutput.h \
+process/ProcessEpistasis.cc \
+process/ProcessEpistasis.h \
+process/ProcessFBATOutput.cc \
+process/ProcessFBATOutput.h \
+process/ProcessFilterProcess.cc \
+process/ProcessFilterProcess.h \
+process/ProcessFst.cc \
+process/ProcessFst.h \
+process/ProcessGenderCheck.cc \
+process/ProcessGenderCheck.h \
+process/ProcessGRROutput.cc \
+process/ProcessGRROutput.h \
+Process.h \
+process/ProcessHomozygous.cc \
+process/ProcessHomozygous.h \
+process/ProcessHWEquilibrium.cc \
+process/ProcessHWEquilibrium.h \
+process/ProcessIBS.cc \
+process/ProcessIBS.h \
+process/ProcessImputeOutput.cc \
+process/ProcessImputeOutput.h \
+process/ProcessKinship.cc \
+process/ProcessKinship.h \
+process/ProcessLAPISOutput.cc \
+process/ProcessLAPISOutput.h \
+process/ProcessLD.cc \
+process/ProcessLD.h \
+process/ProcessLinearReg.cc \
+process/ProcessLinearReg.h \
+process/ProcessLogReg.cc \
+process/ProcessLogReg.h \
+process/ProcessMarkerGenoEff.cc \
+process/ProcessMarkerGenoEff.h \
+process/ProcessMDR.cc \
+process/ProcessMDR.h \
+process/ProcessMDROutput.cc \
+process/ProcessMDROutput.h \
+process/ProcessMDRPDT.cc \
+process/ProcessMDRPDT.h \
+process/ProcessMendelianErrors.cc \
+process/ProcessMendelianErrors.h \
+process/ProcessMitoCheck.cc \
+process/ProcessMitoCheck.h \
+process/ProcessPDT2Output.cc \
+process/ProcessPDT2Output.h \
+process/ProcessPEDOutput.cc \
+process/ProcessPEDOutput.h \
+process/ProcessPHASEOutput.cc \
+process/ProcessPHASEOutput.h \
+process/ProcessPowerMarkerOutput.cc \
+process/ProcessPowerMarkerOutput.h \
+process/ProcessQTDTOutput.cc \
+process/ProcessQTDTOutput.h \
+process/ProcessRunTDT.cc \
+process/ProcessRunTDT.h \
+process/ProcessSampleGenoEff.cc \
+process/ProcessSampleGenoEff.h \
+process/ProcessSTRUCTOutput.cc \
+process/ProcessSTRUCTOutput.h \
+process/ProcessSuperlinkOutput.cc \
+process/ProcessSuperlinkOutput.h \
+process/ProcessTPEDOutput.cc \
+process/ProcessTPEDOutput.h \
+wasp.cc \
+wasp.h \
+process/ProcessInteraction.h \
+process/ProcessInteraction.cpp \
+ProcessFactory.cpp \
+ProcessFactory.h
+
diff --git a/Makefile.in b/Makefile.in
new file mode 100644
index 0000000..a89e116
--- /dev/null
+++ b/Makefile.in
@@ -0,0 +1,1336 @@
+# Makefile.in generated by automake 1.11.1 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
+# Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+ at SET_MAKE@
+
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+bin_PROGRAMS = plato$(EXEEXT)
+subdir = .
+DIST_COMMON = $(am__configure_deps) $(srcdir)/Makefile.am \
+ $(srcdir)/Makefile.in $(srcdir)/config.h.in \
+ $(top_srcdir)/configure config.guess config.sub depcomp \
+ install-sh ltmain.sh missing
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/make/m4/ax_boost_base.m4 \
+ $(top_srcdir)/make/m4/ax_boost_lib.m4 \
+ $(top_srcdir)/make/m4/ax_check_enable_debug.m4 \
+ $(top_srcdir)/make/m4/ax_check_enable_loki.m4 \
+ $(top_srcdir)/make/m4/ax_compare_version.m4 \
+ $(top_srcdir)/make/m4/ax_freetype_base.m4 \
+ $(top_srcdir)/make/m4/ax_path_gsl.m4 \
+ $(top_srcdir)/make/m4/ax_prog_cc_mpi.m4 \
+ $(top_srcdir)/make/m4/ax_prog_cxx_mpi.m4 \
+ $(top_srcdir)/make/m4/ax_prog_python_version.m4 \
+ $(top_srcdir)/make/m4/ax_python_module.m4 \
+ $(top_srcdir)/make/m4/ax_soci_core.m4 \
+ $(top_srcdir)/make/m4/ax_soci_sqlite.m4 \
+ $(top_srcdir)/make/m4/libtool.m4 \
+ $(top_srcdir)/make/m4/ltoptions.m4 \
+ $(top_srcdir)/make/m4/ltsugar.m4 \
+ $(top_srcdir)/make/m4/ltversion.m4 \
+ $(top_srcdir)/make/m4/lt~obsolete.m4 \
+ $(top_srcdir)/make/m4/rl_configure.m4 \
+ $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+ $(ACLOCAL_M4)
+am__CONFIG_DISTCLEAN_FILES = config.status config.cache config.log \
+ configure.lineno config.status.lineno
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = config.h
+CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+PROGRAMS = $(bin_PROGRAMS)
+am_plato_OBJECTS = Process.$(OBJEXT) main.$(OBJEXT) \
+ ProcessFactory.$(OBJEXT) MPIProcess.$(OBJEXT) \
+ MPIProcessFactory.$(OBJEXT) InputProcess.$(OBJEXT) \
+ BatchProcess.$(OBJEXT) OutputPED.$(OBJEXT) OutputBED.$(OBJEXT) \
+ OutputTPED.$(OBJEXT) TraitLoader.$(OBJEXT) \
+ LogisticRegression.$(OBJEXT) LinearRegression.$(OBJEXT) \
+ SampleMissingFilter.$(OBJEXT) MarkerMissingFilter.$(OBJEXT) \
+ AlleleFreqFilter.$(OBJEXT) TraitMissingFilter.$(OBJEXT) \
+ ConcordanceProcess.$(OBJEXT) OutputEigenstrat.$(OBJEXT) \
+ OutputBeagle.$(OBJEXT) RecodeAlleles.$(OBJEXT) \
+ AutoRegression.$(OBJEXT)
+plato_OBJECTS = $(am_plato_OBJECTS)
+am__DEPENDENCIES_1 =
+plato_DEPENDENCIES = method_lib/libmethods.la $(am__DEPENDENCIES_1) \
+ $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) \
+ $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1)
+DEFAULT_INCLUDES = -I. at am__isrc@
+depcomp = $(SHELL) $(top_srcdir)/depcomp
+am__depfiles_maybe = depfiles
+am__mv = mv -f
+CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
+LTCXXCOMPILE = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
+CXXLD = $(CXX)
+CXXLINK = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=link $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) \
+ $(LDFLAGS) -o $@
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+ $(LDFLAGS) -o $@
+SOURCES = $(plato_SOURCES)
+DIST_SOURCES = $(plato_SOURCES)
+RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
+ html-recursive info-recursive install-data-recursive \
+ install-dvi-recursive install-exec-recursive \
+ install-html-recursive install-info-recursive \
+ install-pdf-recursive install-ps-recursive install-recursive \
+ installcheck-recursive installdirs-recursive pdf-recursive \
+ ps-recursive uninstall-recursive
+RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive \
+ distclean-recursive maintainer-clean-recursive
+AM_RECURSIVE_TARGETS = $(RECURSIVE_TARGETS:-recursive=) \
+ $(RECURSIVE_CLEAN_TARGETS:-recursive=) tags TAGS ctags CTAGS \
+ distdir dist dist-all distcheck
+ETAGS = etags
+CTAGS = ctags
+DIST_SUBDIRS = $(SUBDIRS)
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+distdir = $(PACKAGE)-$(VERSION)
+top_distdir = $(distdir)
+am__remove_distdir = \
+ { test ! -d "$(distdir)" \
+ || { find "$(distdir)" -type d ! -perm -200 -exec chmod u+w {} ';' \
+ && rm -fr "$(distdir)"; }; }
+am__relativize = \
+ dir0=`pwd`; \
+ sed_first='s,^\([^/]*\)/.*$$,\1,'; \
+ sed_rest='s,^[^/]*/*,,'; \
+ sed_last='s,^.*/\([^/]*\)$$,\1,'; \
+ sed_butlast='s,/*[^/]*$$,,'; \
+ while test -n "$$dir1"; do \
+ first=`echo "$$dir1" | sed -e "$$sed_first"`; \
+ if test "$$first" != "."; then \
+ if test "$$first" = ".."; then \
+ dir2=`echo "$$dir0" | sed -e "$$sed_last"`/"$$dir2"; \
+ dir0=`echo "$$dir0" | sed -e "$$sed_butlast"`; \
+ else \
+ first2=`echo "$$dir2" | sed -e "$$sed_first"`; \
+ if test "$$first2" = "$$first"; then \
+ dir2=`echo "$$dir2" | sed -e "$$sed_rest"`; \
+ else \
+ dir2="../$$dir2"; \
+ fi; \
+ dir0="$$dir0"/"$$first"; \
+ fi; \
+ fi; \
+ dir1=`echo "$$dir1" | sed -e "$$sed_rest"`; \
+ done; \
+ reldir="$$dir2"
+DIST_ARCHIVES = $(distdir).tar.gz
+GZIP_ENV = --best
+distuninstallcheck_listfiles = find . -type f -print
+distcleancheck_listfiles = find . -type f -print
+ACLOCAL = @ACLOCAL@
+AMTAR = @AMTAR@
+AR = @AR@
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
+AWK = @AWK@
+BOOST_CPPFLAGS = @BOOST_CPPFLAGS@
+BOOST_FILESYSTEM_LIB = @BOOST_FILESYSTEM_LIB@
+BOOST_IOSTREAMS_LIB = @BOOST_IOSTREAMS_LIB@
+BOOST_LDFLAGS = @BOOST_LDFLAGS@
+BOOST_PROGRAM_OPTIONS_LIB = @BOOST_PROGRAM_OPTIONS_LIB@
+BOOST_REGEX_LIB = @BOOST_REGEX_LIB@
+BOOST_SERIALIZATION_LIB = @BOOST_SERIALIZATION_LIB@
+BOOST_SYSTEM_LIB = @BOOST_SYSTEM_LIB@
+BOOST_THREAD_LIB = @BOOST_THREAD_LIB@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CFLAGS = @CFLAGS@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@
+CYGPATH_W = @CYGPATH_W@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DSYMUTIL = @DSYMUTIL@
+DUMPBIN = @DUMPBIN@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+FGREP = @FGREP@
+FREETYPE_CPPFLAGS = @FREETYPE_CPPFLAGS@
+FREETYPE_LDFLAGS = @FREETYPE_LDFLAGS@
+FREETYPE_LIB = @FREETYPE_LIB@
+GREP = @GREP@
+GSL_CFLAGS = @GSL_CFLAGS@
+GSL_CONFIG = @GSL_CONFIG@
+GSL_LDFLAGS = @GSL_LDFLAGS@
+GSL_LIBS = @GSL_LIBS@
+HAVE_INLINE = @HAVE_INLINE@
+INSTALL = @INSTALL@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+LD = @LD@
+LDFLAGS = @LDFLAGS@
+LIBOBJS = @LIBOBJS@
+LIBR_CFLAGS = @LIBR_CFLAGS@
+LIBR_LIBS = @LIBR_LIBS@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LIPO = @LIPO@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+MAKEINFO = @MAKEINFO@
+MKDIR_P = @MKDIR_P@
+MPICC = @MPICC@
+MPICXX = @MPICXX@
+NM = @NM@
+NMEDIT = @NMEDIT@
+OBJDUMP = @OBJDUMP@
+OBJEXT = @OBJEXT@
+OTOOL = @OTOOL@
+OTOOL64 = @OTOOL64@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+PKG_CONFIG = @PKG_CONFIG@
+PNG_CFLAGS = @PNG_CFLAGS@
+PNG_LIBS = @PNG_LIBS@
+POW_LIB = @POW_LIB@
+PYTHON = @PYTHON@
+PYTHON_VERSION = @PYTHON_VERSION@
+RANLIB = @RANLIB@
+SED = @SED@
+SET_MAKE = @SET_MAKE@
+SHELL = @SHELL@
+SOCI_CPPFLAGS = @SOCI_CPPFLAGS@
+SOCI_LDFLAGS = @SOCI_LDFLAGS@
+SOCI_LIB = @SOCI_LIB@
+SOCI_SQLITE_CPPFLAGS = @SOCI_SQLITE_CPPFLAGS@
+SOCI_SQLITE_LDFLAGS = @SOCI_SQLITE_LDFLAGS@
+SOCI_SQLITE_LIB = @SOCI_SQLITE_LIB@
+SQLITE_CFLAGS = @SQLITE_CFLAGS@
+SQLITE_LIBS = @SQLITE_LIBS@
+STRIP = @STRIP@
+VERSION = @VERSION@
+abs_builddir = @abs_builddir@
+abs_srcdir = @abs_srcdir@
+abs_top_builddir = @abs_top_builddir@
+abs_top_srcdir = @abs_top_srcdir@
+ac_ct_CC = @ac_ct_CC@
+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
+am__include = @am__include@
+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
+am__tar = @am__tar@
+am__untar = @am__untar@
+bindir = @bindir@
+build = @build@
+build_alias = @build_alias@
+build_cpu = @build_cpu@
+build_os = @build_os@
+build_vendor = @build_vendor@
+builddir = @builddir@
+datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+dvidir = @dvidir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+htmldir = @htmldir@
+includedir = @includedir@
+infodir = @infodir@
+install_sh = @install_sh@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localedir = @localedir@
+localstatedir = @localstatedir@
+lt_ECHO = @lt_ECHO@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+psdir = @psdir@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+srcdir = @srcdir@
+sysconfdir = @sysconfdir@
+target_alias = @target_alias@
+top_build_prefix = @top_build_prefix@
+top_builddir = @top_builddir@
+top_srcdir = @top_srcdir@
+ACLOCAL_AMFLAGS = -I ./make/m4
+SUBDIRS = method_lib
+EXTRA_DIST = doc/manual.odt \
+doc/MPI_API.odt \
+process/ExampleModule.h \
+process/ExampleModule.cpp \
+CREATED \
+CHANGELOG \
+README.txt
+
+CLEANFILES = doc/manual.odt \
+doc/MPI_API.odt \
+process/ExampleModule.h \
+process/ExampleModule.cpp \
+CREATED \
+CHANGELOG \
+README.txt
+
+
+# This is here to prevent installation of LOKI during a distcheck
+DISTCHECK_CONFIGURE_FLAGS = --disable-loki
+AM_CPPFLAGS = $(BOOST_CPPFLAGS) -I$(top_srcdir)/method_lib
+AM_LDFLAGS = $(BOOST_LDFLAGS)
+plato_SOURCES = Process.cpp \
+Process.h \
+main.cpp \
+main.h \
+ProcessFactory.cpp \
+ProcessFactory.h \
+MPIProcess.h \
+MPIProcess.cpp \
+MPIProcessFactory.h \
+MPIProcessFactory.cpp \
+process/InputProcess.cpp \
+process/InputProcess.h \
+process/BatchProcess.cpp \
+process/BatchProcess.h \
+process/OutputPED.cpp \
+process/OutputPED.h \
+process/OutputBED.cpp \
+process/OutputBED.h \
+process/OutputTPED.cpp \
+process/OutputTPED.h \
+process/TraitLoader.h \
+process/TraitLoader.cpp \
+process/LogisticRegression.h \
+process/LogisticRegression.cpp \
+process/LinearRegression.h \
+process/LinearRegression.cpp \
+process/SampleMissingFilter.h \
+process/SampleMissingFilter.cpp \
+process/MarkerMissingFilter.h \
+process/MarkerMissingFilter.cpp \
+process/AlleleFreqFilter.h \
+process/AlleleFreqFilter.cpp \
+process/TraitMissingFilter.h \
+process/TraitMissingFilter.cpp \
+process/ConcordanceProcess.h \
+process/ConcordanceProcess.cpp \
+process/OutputEigenstrat.h \
+process/OutputEigenstrat.cpp \
+process/OutputBeagle.h \
+process/OutputBeagle.cpp \
+process/RecodeAlleles.h \
+process/RecodeAlleles.cpp \
+process/AutoRegression.h \
+process/AutoRegression.cpp
+
+plato_LDADD = method_lib/libmethods.la $(BOOST_THREAD_LIB) \
+$(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_FILESYSTEM_LIB) $(BOOST_REGEX_LIB) \
+$(BOOST_SERIALIZATION_LIB)
+
+
+############################################################################
+# Everything below this line is from Plato 1.x, before the rewrite
+############################################################################
+orig_plato_src = cdflib.h \
+dcdflib.cpp \
+ipmpar.c \
+Finalize.cc \
+Finalize.h \
+process/PercentByFamily.cc \
+process/PercentByFamily.h \
+process/ProcessAlleleFrequency.cc \
+process/ProcessAlleleFrequency.h \
+process/ProcessBEAGLEOutput.cc \
+process/ProcessBEAGLEOutput.h \
+process/ProcessBINOutput.cc \
+process/ProcessBINOutput.h \
+process/ProcessCaConChisq.cc \
+process/ProcessCaConChisq.h \
+Process.cc \
+process/ProcessClusterMissing.cc \
+process/ProcessClusterMissing.h \
+process/ProcessCMH.cc \
+process/ProcessCMH.h \
+process/ProcessConcordance.cc \
+process/ProcessConcordance.h \
+process/ProcessDeletions.cc \
+process/ProcessDeletions.h \
+process/ProcessEigenstratOutput.cc \
+process/ProcessEigenstratOutput.h \
+process/ProcessEpistasis.cc \
+process/ProcessEpistasis.h \
+process/ProcessFBATOutput.cc \
+process/ProcessFBATOutput.h \
+process/ProcessFilterProcess.cc \
+process/ProcessFilterProcess.h \
+process/ProcessFst.cc \
+process/ProcessFst.h \
+process/ProcessGenderCheck.cc \
+process/ProcessGenderCheck.h \
+process/ProcessGRROutput.cc \
+process/ProcessGRROutput.h \
+Process.h \
+process/ProcessHomozygous.cc \
+process/ProcessHomozygous.h \
+process/ProcessHWEquilibrium.cc \
+process/ProcessHWEquilibrium.h \
+process/ProcessIBS.cc \
+process/ProcessIBS.h \
+process/ProcessImputeOutput.cc \
+process/ProcessImputeOutput.h \
+process/ProcessKinship.cc \
+process/ProcessKinship.h \
+process/ProcessLAPISOutput.cc \
+process/ProcessLAPISOutput.h \
+process/ProcessLD.cc \
+process/ProcessLD.h \
+process/ProcessLinearReg.cc \
+process/ProcessLinearReg.h \
+process/ProcessLogReg.cc \
+process/ProcessLogReg.h \
+process/ProcessMarkerGenoEff.cc \
+process/ProcessMarkerGenoEff.h \
+process/ProcessMDR.cc \
+process/ProcessMDR.h \
+process/ProcessMDROutput.cc \
+process/ProcessMDROutput.h \
+process/ProcessMDRPDT.cc \
+process/ProcessMDRPDT.h \
+process/ProcessMendelianErrors.cc \
+process/ProcessMendelianErrors.h \
+process/ProcessMitoCheck.cc \
+process/ProcessMitoCheck.h \
+process/ProcessPDT2Output.cc \
+process/ProcessPDT2Output.h \
+process/ProcessPEDOutput.cc \
+process/ProcessPEDOutput.h \
+process/ProcessPHASEOutput.cc \
+process/ProcessPHASEOutput.h \
+process/ProcessPowerMarkerOutput.cc \
+process/ProcessPowerMarkerOutput.h \
+process/ProcessQTDTOutput.cc \
+process/ProcessQTDTOutput.h \
+process/ProcessRunTDT.cc \
+process/ProcessRunTDT.h \
+process/ProcessSampleGenoEff.cc \
+process/ProcessSampleGenoEff.h \
+process/ProcessSTRUCTOutput.cc \
+process/ProcessSTRUCTOutput.h \
+process/ProcessSuperlinkOutput.cc \
+process/ProcessSuperlinkOutput.h \
+process/ProcessTPEDOutput.cc \
+process/ProcessTPEDOutput.h \
+wasp.cc \
+wasp.h \
+process/ProcessInteraction.h \
+process/ProcessInteraction.cpp \
+ProcessFactory.cpp \
+ProcessFactory.h
+
+all: config.h
+ $(MAKE) $(AM_MAKEFLAGS) all-recursive
+
+.SUFFIXES:
+.SUFFIXES: .cpp .lo .o .obj
+am--refresh:
+ @:
+$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
+ @for dep in $?; do \
+ case '$(am__configure_deps)' in \
+ *$$dep*) \
+ echo ' cd $(srcdir) && $(AUTOMAKE) --foreign'; \
+ $(am__cd) $(srcdir) && $(AUTOMAKE) --foreign \
+ && exit 0; \
+ exit 1;; \
+ esac; \
+ done; \
+ echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign Makefile'; \
+ $(am__cd) $(top_srcdir) && \
+ $(AUTOMAKE) --foreign Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+ @case '$?' in \
+ *config.status*) \
+ echo ' $(SHELL) ./config.status'; \
+ $(SHELL) ./config.status;; \
+ *) \
+ echo ' cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe)'; \
+ cd $(top_builddir) && $(SHELL) ./config.status $@ $(am__depfiles_maybe);; \
+ esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+ $(SHELL) ./config.status --recheck
+
+$(top_srcdir)/configure: $(am__configure_deps)
+ $(am__cd) $(srcdir) && $(AUTOCONF)
+$(ACLOCAL_M4): $(am__aclocal_m4_deps)
+ $(am__cd) $(srcdir) && $(ACLOCAL) $(ACLOCAL_AMFLAGS)
+$(am__aclocal_m4_deps):
+
+config.h: stamp-h1
+ @if test ! -f $@; then \
+ rm -f stamp-h1; \
+ $(MAKE) $(AM_MAKEFLAGS) stamp-h1; \
+ else :; fi
+
+stamp-h1: $(srcdir)/config.h.in $(top_builddir)/config.status
+ @rm -f stamp-h1
+ cd $(top_builddir) && $(SHELL) ./config.status config.h
+$(srcdir)/config.h.in: $(am__configure_deps)
+ ($(am__cd) $(top_srcdir) && $(AUTOHEADER))
+ rm -f stamp-h1
+ touch $@
+
+distclean-hdr:
+ -rm -f config.h stamp-h1
+install-binPROGRAMS: $(bin_PROGRAMS)
+ @$(NORMAL_INSTALL)
+ test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+ @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
+ for p in $$list; do echo "$$p $$p"; done | \
+ sed 's/$(EXEEXT)$$//' | \
+ while read p p1; do if test -f $$p || test -f $$p1; \
+ then echo "$$p"; echo "$$p"; else :; fi; \
+ done | \
+ sed -e 'p;s,.*/,,;n;h' -e 's|.*|.|' \
+ -e 'p;x;s,.*/,,;s/$(EXEEXT)$$//;$(transform);s/$$/$(EXEEXT)/' | \
+ sed 'N;N;N;s,\n, ,g' | \
+ $(AWK) 'BEGIN { files["."] = ""; dirs["."] = 1 } \
+ { d=$$3; if (dirs[d] != 1) { print "d", d; dirs[d] = 1 } \
+ if ($$2 == $$4) files[d] = files[d] " " $$1; \
+ else { print "f", $$3 "/" $$4, $$1; } } \
+ END { for (d in files) print "f", d, files[d] }' | \
+ while read type dir files; do \
+ if test "$$dir" = .; then dir=; else dir=/$$dir; fi; \
+ test -z "$$files" || { \
+ echo " $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files '$(DESTDIR)$(bindir)$$dir'"; \
+ $(INSTALL_PROGRAM_ENV) $(LIBTOOL) $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=install $(INSTALL_PROGRAM) $$files "$(DESTDIR)$(bindir)$$dir" || exit $$?; \
+ } \
+ ; done
+
+uninstall-binPROGRAMS:
+ @$(NORMAL_UNINSTALL)
+ @list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
+ files=`for p in $$list; do echo "$$p"; done | \
+ sed -e 'h;s,^.*/,,;s/$(EXEEXT)$$//;$(transform)' \
+ -e 's/$$/$(EXEEXT)/' `; \
+ test -n "$$list" || exit 0; \
+ echo " ( cd '$(DESTDIR)$(bindir)' && rm -f" $$files ")"; \
+ cd "$(DESTDIR)$(bindir)" && rm -f $$files
+
+clean-binPROGRAMS:
+ @list='$(bin_PROGRAMS)'; test -n "$$list" || exit 0; \
+ echo " rm -f" $$list; \
+ rm -f $$list || exit $$?; \
+ test -n "$(EXEEXT)" || exit 0; \
+ list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
+ echo " rm -f" $$list; \
+ rm -f $$list
+plato$(EXEEXT): $(plato_OBJECTS) $(plato_DEPENDENCIES)
+ @rm -f plato$(EXEEXT)
+ $(CXXLINK) $(plato_OBJECTS) $(plato_LDADD) $(LIBS)
+
+mostlyclean-compile:
+ -rm -f *.$(OBJEXT)
+
+distclean-compile:
+ -rm -f *.tab.c
+
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/AlleleFreqFilter.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/AutoRegression.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/BatchProcess.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/ConcordanceProcess.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/InputProcess.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/LinearRegression.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/LogisticRegression.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/MPIProcess.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/MPIProcessFactory.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/MarkerMissingFilter.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/OutputBED.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/OutputBeagle.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/OutputEigenstrat.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/OutputPED.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/OutputTPED.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Process.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/ProcessFactory.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/RecodeAlleles.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/SampleMissingFilter.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/TraitLoader.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/TraitMissingFilter.Po at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/main.Po at am__quote@
+
+.cpp.o:
+ at am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $<
+
+.cpp.obj:
+ at am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
+
+.cpp.lo:
+ at am__fastdepCXX_TRUE@ $(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $<
+
+InputProcess.o: process/InputProcess.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT InputProcess.o -MD -MP -MF $(DEPDIR)/InputProcess.Tpo -c -o InputProcess.o `test -f 'process/InputProcess.cpp' || echo '$(srcdir)/'`process/InputProcess.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/InputProcess.Tpo $(DEPDIR)/InputProcess.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/InputProcess.cpp' object='InputProcess.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o InputProcess.o `test -f 'process/InputProcess.cpp' || echo '$(srcdir)/'`process/InputProcess.cpp
+
+InputProcess.obj: process/InputProcess.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT InputProcess.obj -MD -MP -MF $(DEPDIR)/InputProcess.Tpo -c -o InputProcess.obj `if test -f 'process/InputProcess.cpp'; then $(CYGPATH_W) 'process/InputProcess.cpp'; else $(CYGPATH_W) '$(srcdir)/process/InputProcess.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/InputProcess.Tpo $(DEPDIR)/InputProcess.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/InputProcess.cpp' object='InputProcess.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o InputProcess.obj `if test -f 'process/InputProcess.cpp'; then $(CYGPATH_W) 'process/InputProcess.cpp'; else $(CYGPATH_W) '$(srcdir)/process/InputProcess.cpp'; fi`
+
+BatchProcess.o: process/BatchProcess.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT BatchProcess.o -MD -MP -MF $(DEPDIR)/BatchProcess.Tpo -c -o BatchProcess.o `test -f 'process/BatchProcess.cpp' || echo '$(srcdir)/'`process/BatchProcess.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/BatchProcess.Tpo $(DEPDIR)/BatchProcess.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/BatchProcess.cpp' object='BatchProcess.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o BatchProcess.o `test -f 'process/BatchProcess.cpp' || echo '$(srcdir)/'`process/BatchProcess.cpp
+
+BatchProcess.obj: process/BatchProcess.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT BatchProcess.obj -MD -MP -MF $(DEPDIR)/BatchProcess.Tpo -c -o BatchProcess.obj `if test -f 'process/BatchProcess.cpp'; then $(CYGPATH_W) 'process/BatchProcess.cpp'; else $(CYGPATH_W) '$(srcdir)/process/BatchProcess.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/BatchProcess.Tpo $(DEPDIR)/BatchProcess.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/BatchProcess.cpp' object='BatchProcess.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o BatchProcess.obj `if test -f 'process/BatchProcess.cpp'; then $(CYGPATH_W) 'process/BatchProcess.cpp'; else $(CYGPATH_W) '$(srcdir)/process/BatchProcess.cpp'; fi`
+
+OutputPED.o: process/OutputPED.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputPED.o -MD -MP -MF $(DEPDIR)/OutputPED.Tpo -c -o OutputPED.o `test -f 'process/OutputPED.cpp' || echo '$(srcdir)/'`process/OutputPED.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputPED.Tpo $(DEPDIR)/OutputPED.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputPED.cpp' object='OutputPED.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputPED.o `test -f 'process/OutputPED.cpp' || echo '$(srcdir)/'`process/OutputPED.cpp
+
+OutputPED.obj: process/OutputPED.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputPED.obj -MD -MP -MF $(DEPDIR)/OutputPED.Tpo -c -o OutputPED.obj `if test -f 'process/OutputPED.cpp'; then $(CYGPATH_W) 'process/OutputPED.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputPED.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputPED.Tpo $(DEPDIR)/OutputPED.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputPED.cpp' object='OutputPED.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputPED.obj `if test -f 'process/OutputPED.cpp'; then $(CYGPATH_W) 'process/OutputPED.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputPED.cpp'; fi`
+
+OutputBED.o: process/OutputBED.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputBED.o -MD -MP -MF $(DEPDIR)/OutputBED.Tpo -c -o OutputBED.o `test -f 'process/OutputBED.cpp' || echo '$(srcdir)/'`process/OutputBED.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputBED.Tpo $(DEPDIR)/OutputBED.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputBED.cpp' object='OutputBED.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputBED.o `test -f 'process/OutputBED.cpp' || echo '$(srcdir)/'`process/OutputBED.cpp
+
+OutputBED.obj: process/OutputBED.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputBED.obj -MD -MP -MF $(DEPDIR)/OutputBED.Tpo -c -o OutputBED.obj `if test -f 'process/OutputBED.cpp'; then $(CYGPATH_W) 'process/OutputBED.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputBED.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputBED.Tpo $(DEPDIR)/OutputBED.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputBED.cpp' object='OutputBED.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputBED.obj `if test -f 'process/OutputBED.cpp'; then $(CYGPATH_W) 'process/OutputBED.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputBED.cpp'; fi`
+
+OutputTPED.o: process/OutputTPED.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputTPED.o -MD -MP -MF $(DEPDIR)/OutputTPED.Tpo -c -o OutputTPED.o `test -f 'process/OutputTPED.cpp' || echo '$(srcdir)/'`process/OutputTPED.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputTPED.Tpo $(DEPDIR)/OutputTPED.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputTPED.cpp' object='OutputTPED.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputTPED.o `test -f 'process/OutputTPED.cpp' || echo '$(srcdir)/'`process/OutputTPED.cpp
+
+OutputTPED.obj: process/OutputTPED.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputTPED.obj -MD -MP -MF $(DEPDIR)/OutputTPED.Tpo -c -o OutputTPED.obj `if test -f 'process/OutputTPED.cpp'; then $(CYGPATH_W) 'process/OutputTPED.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputTPED.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputTPED.Tpo $(DEPDIR)/OutputTPED.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputTPED.cpp' object='OutputTPED.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputTPED.obj `if test -f 'process/OutputTPED.cpp'; then $(CYGPATH_W) 'process/OutputTPED.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputTPED.cpp'; fi`
+
+TraitLoader.o: process/TraitLoader.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT TraitLoader.o -MD -MP -MF $(DEPDIR)/TraitLoader.Tpo -c -o TraitLoader.o `test -f 'process/TraitLoader.cpp' || echo '$(srcdir)/'`process/TraitLoader.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/TraitLoader.Tpo $(DEPDIR)/TraitLoader.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/TraitLoader.cpp' object='TraitLoader.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o TraitLoader.o `test -f 'process/TraitLoader.cpp' || echo '$(srcdir)/'`process/TraitLoader.cpp
+
+TraitLoader.obj: process/TraitLoader.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT TraitLoader.obj -MD -MP -MF $(DEPDIR)/TraitLoader.Tpo -c -o TraitLoader.obj `if test -f 'process/TraitLoader.cpp'; then $(CYGPATH_W) 'process/TraitLoader.cpp'; else $(CYGPATH_W) '$(srcdir)/process/TraitLoader.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/TraitLoader.Tpo $(DEPDIR)/TraitLoader.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/TraitLoader.cpp' object='TraitLoader.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o TraitLoader.obj `if test -f 'process/TraitLoader.cpp'; then $(CYGPATH_W) 'process/TraitLoader.cpp'; else $(CYGPATH_W) '$(srcdir)/process/TraitLoader.cpp'; fi`
+
+LogisticRegression.o: process/LogisticRegression.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT LogisticRegression.o -MD -MP -MF $(DEPDIR)/LogisticRegression.Tpo -c -o LogisticRegression.o `test -f 'process/LogisticRegression.cpp' || echo '$(srcdir)/'`process/LogisticRegression.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/LogisticRegression.Tpo $(DEPDIR)/LogisticRegression.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/LogisticRegression.cpp' object='LogisticRegression.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o LogisticRegression.o `test -f 'process/LogisticRegression.cpp' || echo '$(srcdir)/'`process/LogisticRegression.cpp
+
+LogisticRegression.obj: process/LogisticRegression.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT LogisticRegression.obj -MD -MP -MF $(DEPDIR)/LogisticRegression.Tpo -c -o LogisticRegression.obj `if test -f 'process/LogisticRegression.cpp'; then $(CYGPATH_W) 'process/LogisticRegression.cpp'; else $(CYGPATH_W) '$(srcdir)/process/LogisticRegression.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/LogisticRegression.Tpo $(DEPDIR)/LogisticRegression.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/LogisticRegression.cpp' object='LogisticRegression.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o LogisticRegression.obj `if test -f 'process/LogisticRegression.cpp'; then $(CYGPATH_W) 'process/LogisticRegression.cpp'; else $(CYGPATH_W) '$(srcdir)/process/LogisticRegression.cpp'; fi`
+
+LinearRegression.o: process/LinearRegression.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT LinearRegression.o -MD -MP -MF $(DEPDIR)/LinearRegression.Tpo -c -o LinearRegression.o `test -f 'process/LinearRegression.cpp' || echo '$(srcdir)/'`process/LinearRegression.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/LinearRegression.Tpo $(DEPDIR)/LinearRegression.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/LinearRegression.cpp' object='LinearRegression.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o LinearRegression.o `test -f 'process/LinearRegression.cpp' || echo '$(srcdir)/'`process/LinearRegression.cpp
+
+LinearRegression.obj: process/LinearRegression.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT LinearRegression.obj -MD -MP -MF $(DEPDIR)/LinearRegression.Tpo -c -o LinearRegression.obj `if test -f 'process/LinearRegression.cpp'; then $(CYGPATH_W) 'process/LinearRegression.cpp'; else $(CYGPATH_W) '$(srcdir)/process/LinearRegression.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/LinearRegression.Tpo $(DEPDIR)/LinearRegression.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/LinearRegression.cpp' object='LinearRegression.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o LinearRegression.obj `if test -f 'process/LinearRegression.cpp'; then $(CYGPATH_W) 'process/LinearRegression.cpp'; else $(CYGPATH_W) '$(srcdir)/process/LinearRegression.cpp'; fi`
+
+SampleMissingFilter.o: process/SampleMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT SampleMissingFilter.o -MD -MP -MF $(DEPDIR)/SampleMissingFilter.Tpo -c -o SampleMissingFilter.o `test -f 'process/SampleMissingFilter.cpp' || echo '$(srcdir)/'`process/SampleMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/SampleMissingFilter.Tpo $(DEPDIR)/SampleMissingFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/SampleMissingFilter.cpp' object='SampleMissingFilter.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o SampleMissingFilter.o `test -f 'process/SampleMissingFilter.cpp' || echo '$(srcdir)/'`process/SampleMissingFilter.cpp
+
+SampleMissingFilter.obj: process/SampleMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT SampleMissingFilter.obj -MD -MP -MF $(DEPDIR)/SampleMissingFilter.Tpo -c -o SampleMissingFilter.obj `if test -f 'process/SampleMissingFilter.cpp'; then $(CYGPATH_W) 'process/SampleMissingFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/SampleMissingFilter.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/SampleMissingFilter.Tpo $(DEPDIR)/SampleMissingFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/SampleMissingFilter.cpp' object='SampleMissingFilter.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o SampleMissingFilter.obj `if test -f 'process/SampleMissingFilter.cpp'; then $(CYGPATH_W) 'process/SampleMissingFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/SampleMissingFilter.cpp'; fi`
+
+MarkerMissingFilter.o: process/MarkerMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT MarkerMissingFilter.o -MD -MP -MF $(DEPDIR)/MarkerMissingFilter.Tpo -c -o MarkerMissingFilter.o `test -f 'process/MarkerMissingFilter.cpp' || echo '$(srcdir)/'`process/MarkerMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/MarkerMissingFilter.Tpo $(DEPDIR)/MarkerMissingFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/MarkerMissingFilter.cpp' object='MarkerMissingFilter.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o MarkerMissingFilter.o `test -f 'process/MarkerMissingFilter.cpp' || echo '$(srcdir)/'`process/MarkerMissingFilter.cpp
+
+MarkerMissingFilter.obj: process/MarkerMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT MarkerMissingFilter.obj -MD -MP -MF $(DEPDIR)/MarkerMissingFilter.Tpo -c -o MarkerMissingFilter.obj `if test -f 'process/MarkerMissingFilter.cpp'; then $(CYGPATH_W) 'process/MarkerMissingFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/MarkerMissingFilter.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/MarkerMissingFilter.Tpo $(DEPDIR)/MarkerMissingFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/MarkerMissingFilter.cpp' object='MarkerMissingFilter.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o MarkerMissingFilter.obj `if test -f 'process/MarkerMissingFilter.cpp'; then $(CYGPATH_W) 'process/MarkerMissingFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/MarkerMissingFilter.cpp'; fi`
+
+AlleleFreqFilter.o: process/AlleleFreqFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT AlleleFreqFilter.o -MD -MP -MF $(DEPDIR)/AlleleFreqFilter.Tpo -c -o AlleleFreqFilter.o `test -f 'process/AlleleFreqFilter.cpp' || echo '$(srcdir)/'`process/AlleleFreqFilter.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/AlleleFreqFilter.Tpo $(DEPDIR)/AlleleFreqFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/AlleleFreqFilter.cpp' object='AlleleFreqFilter.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o AlleleFreqFilter.o `test -f 'process/AlleleFreqFilter.cpp' || echo '$(srcdir)/'`process/AlleleFreqFilter.cpp
+
+AlleleFreqFilter.obj: process/AlleleFreqFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT AlleleFreqFilter.obj -MD -MP -MF $(DEPDIR)/AlleleFreqFilter.Tpo -c -o AlleleFreqFilter.obj `if test -f 'process/AlleleFreqFilter.cpp'; then $(CYGPATH_W) 'process/AlleleFreqFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/AlleleFreqFilter.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/AlleleFreqFilter.Tpo $(DEPDIR)/AlleleFreqFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/AlleleFreqFilter.cpp' object='AlleleFreqFilter.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o AlleleFreqFilter.obj `if test -f 'process/AlleleFreqFilter.cpp'; then $(CYGPATH_W) 'process/AlleleFreqFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/AlleleFreqFilter.cpp'; fi`
+
+TraitMissingFilter.o: process/TraitMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT TraitMissingFilter.o -MD -MP -MF $(DEPDIR)/TraitMissingFilter.Tpo -c -o TraitMissingFilter.o `test -f 'process/TraitMissingFilter.cpp' || echo '$(srcdir)/'`process/TraitMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/TraitMissingFilter.Tpo $(DEPDIR)/TraitMissingFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/TraitMissingFilter.cpp' object='TraitMissingFilter.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o TraitMissingFilter.o `test -f 'process/TraitMissingFilter.cpp' || echo '$(srcdir)/'`process/TraitMissingFilter.cpp
+
+TraitMissingFilter.obj: process/TraitMissingFilter.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT TraitMissingFilter.obj -MD -MP -MF $(DEPDIR)/TraitMissingFilter.Tpo -c -o TraitMissingFilter.obj `if test -f 'process/TraitMissingFilter.cpp'; then $(CYGPATH_W) 'process/TraitMissingFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/TraitMissingFilter.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/TraitMissingFilter.Tpo $(DEPDIR)/TraitMissingFilter.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/TraitMissingFilter.cpp' object='TraitMissingFilter.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o TraitMissingFilter.obj `if test -f 'process/TraitMissingFilter.cpp'; then $(CYGPATH_W) 'process/TraitMissingFilter.cpp'; else $(CYGPATH_W) '$(srcdir)/process/TraitMissingFilter.cpp'; fi`
+
+ConcordanceProcess.o: process/ConcordanceProcess.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT ConcordanceProcess.o -MD -MP -MF $(DEPDIR)/ConcordanceProcess.Tpo -c -o ConcordanceProcess.o `test -f 'process/ConcordanceProcess.cpp' || echo '$(srcdir)/'`process/ConcordanceProcess.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/ConcordanceProcess.Tpo $(DEPDIR)/ConcordanceProcess.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/ConcordanceProcess.cpp' object='ConcordanceProcess.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o ConcordanceProcess.o `test -f 'process/ConcordanceProcess.cpp' || echo '$(srcdir)/'`process/ConcordanceProcess.cpp
+
+ConcordanceProcess.obj: process/ConcordanceProcess.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT ConcordanceProcess.obj -MD -MP -MF $(DEPDIR)/ConcordanceProcess.Tpo -c -o ConcordanceProcess.obj `if test -f 'process/ConcordanceProcess.cpp'; then $(CYGPATH_W) 'process/ConcordanceProcess.cpp'; else $(CYGPATH_W) '$(srcdir)/process/ConcordanceProcess.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/ConcordanceProcess.Tpo $(DEPDIR)/ConcordanceProcess.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/ConcordanceProcess.cpp' object='ConcordanceProcess.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o ConcordanceProcess.obj `if test -f 'process/ConcordanceProcess.cpp'; then $(CYGPATH_W) 'process/ConcordanceProcess.cpp'; else $(CYGPATH_W) '$(srcdir)/process/ConcordanceProcess.cpp'; fi`
+
+OutputEigenstrat.o: process/OutputEigenstrat.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputEigenstrat.o -MD -MP -MF $(DEPDIR)/OutputEigenstrat.Tpo -c -o OutputEigenstrat.o `test -f 'process/OutputEigenstrat.cpp' || echo '$(srcdir)/'`process/OutputEigenstrat.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputEigenstrat.Tpo $(DEPDIR)/OutputEigenstrat.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputEigenstrat.cpp' object='OutputEigenstrat.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputEigenstrat.o `test -f 'process/OutputEigenstrat.cpp' || echo '$(srcdir)/'`process/OutputEigenstrat.cpp
+
+OutputEigenstrat.obj: process/OutputEigenstrat.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputEigenstrat.obj -MD -MP -MF $(DEPDIR)/OutputEigenstrat.Tpo -c -o OutputEigenstrat.obj `if test -f 'process/OutputEigenstrat.cpp'; then $(CYGPATH_W) 'process/OutputEigenstrat.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputEigenstrat.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputEigenstrat.Tpo $(DEPDIR)/OutputEigenstrat.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputEigenstrat.cpp' object='OutputEigenstrat.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputEigenstrat.obj `if test -f 'process/OutputEigenstrat.cpp'; then $(CYGPATH_W) 'process/OutputEigenstrat.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputEigenstrat.cpp'; fi`
+
+OutputBeagle.o: process/OutputBeagle.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputBeagle.o -MD -MP -MF $(DEPDIR)/OutputBeagle.Tpo -c -o OutputBeagle.o `test -f 'process/OutputBeagle.cpp' || echo '$(srcdir)/'`process/OutputBeagle.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputBeagle.Tpo $(DEPDIR)/OutputBeagle.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputBeagle.cpp' object='OutputBeagle.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputBeagle.o `test -f 'process/OutputBeagle.cpp' || echo '$(srcdir)/'`process/OutputBeagle.cpp
+
+OutputBeagle.obj: process/OutputBeagle.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputBeagle.obj -MD -MP -MF $(DEPDIR)/OutputBeagle.Tpo -c -o OutputBeagle.obj `if test -f 'process/OutputBeagle.cpp'; then $(CYGPATH_W) 'process/OutputBeagle.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputBeagle.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputBeagle.Tpo $(DEPDIR)/OutputBeagle.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/OutputBeagle.cpp' object='OutputBeagle.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputBeagle.obj `if test -f 'process/OutputBeagle.cpp'; then $(CYGPATH_W) 'process/OutputBeagle.cpp'; else $(CYGPATH_W) '$(srcdir)/process/OutputBeagle.cpp'; fi`
+
+RecodeAlleles.o: process/RecodeAlleles.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT RecodeAlleles.o -MD -MP -MF $(DEPDIR)/RecodeAlleles.Tpo -c -o RecodeAlleles.o `test -f 'process/RecodeAlleles.cpp' || echo '$(srcdir)/'`process/RecodeAlleles.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/RecodeAlleles.Tpo $(DEPDIR)/RecodeAlleles.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/RecodeAlleles.cpp' object='RecodeAlleles.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o RecodeAlleles.o `test -f 'process/RecodeAlleles.cpp' || echo '$(srcdir)/'`process/RecodeAlleles.cpp
+
+RecodeAlleles.obj: process/RecodeAlleles.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT RecodeAlleles.obj -MD -MP -MF $(DEPDIR)/RecodeAlleles.Tpo -c -o RecodeAlleles.obj `if test -f 'process/RecodeAlleles.cpp'; then $(CYGPATH_W) 'process/RecodeAlleles.cpp'; else $(CYGPATH_W) '$(srcdir)/process/RecodeAlleles.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/RecodeAlleles.Tpo $(DEPDIR)/RecodeAlleles.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/RecodeAlleles.cpp' object='RecodeAlleles.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o RecodeAlleles.obj `if test -f 'process/RecodeAlleles.cpp'; then $(CYGPATH_W) 'process/RecodeAlleles.cpp'; else $(CYGPATH_W) '$(srcdir)/process/RecodeAlleles.cpp'; fi`
+
+AutoRegression.o: process/AutoRegression.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT AutoRegression.o -MD -MP -MF $(DEPDIR)/AutoRegression.Tpo -c -o AutoRegression.o `test -f 'process/AutoRegression.cpp' || echo '$(srcdir)/'`process/AutoRegression.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/AutoRegression.Tpo $(DEPDIR)/AutoRegression.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/AutoRegression.cpp' object='AutoRegression.o' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o AutoRegression.o `test -f 'process/AutoRegression.cpp' || echo '$(srcdir)/'`process/AutoRegression.cpp
+
+AutoRegression.obj: process/AutoRegression.cpp
+ at am__fastdepCXX_TRUE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT AutoRegression.obj -MD -MP -MF $(DEPDIR)/AutoRegression.Tpo -c -o AutoRegression.obj `if test -f 'process/AutoRegression.cpp'; then $(CYGPATH_W) 'process/AutoRegression.cpp'; else $(CYGPATH_W) '$(srcdir)/process/AutoRegression.cpp'; fi`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/AutoRegression.Tpo $(DEPDIR)/AutoRegression.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='process/AutoRegression.cpp' object='AutoRegression.obj' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o AutoRegression.obj `if test -f 'process/AutoRegression.cpp'; then $(CYGPATH_W) 'process/AutoRegression.cpp'; else $(CYGPATH_W) '$(srcdir)/process/AutoRegression.cpp'; fi`
+
+mostlyclean-libtool:
+ -rm -f *.lo
+
+clean-libtool:
+ -rm -rf .libs _libs
+
+distclean-libtool:
+ -rm -f libtool config.lt
+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+# (which will cause the Makefiles to be regenerated when you run `make');
+# (2) otherwise, pass the desired values on the `make' command line.
+$(RECURSIVE_TARGETS):
+ @fail= failcom='exit 1'; \
+ for f in x $$MAKEFLAGS; do \
+ case $$f in \
+ *=* | --[!k]*);; \
+ *k*) failcom='fail=yes';; \
+ esac; \
+ done; \
+ dot_seen=no; \
+ target=`echo $@ | sed s/-recursive//`; \
+ list='$(SUBDIRS)'; for subdir in $$list; do \
+ echo "Making $$target in $$subdir"; \
+ if test "$$subdir" = "."; then \
+ dot_seen=yes; \
+ local_target="$$target-am"; \
+ else \
+ local_target="$$target"; \
+ fi; \
+ ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+ || eval $$failcom; \
+ done; \
+ if test "$$dot_seen" = "no"; then \
+ $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+ fi; test -z "$$fail"
+
+$(RECURSIVE_CLEAN_TARGETS):
+ @fail= failcom='exit 1'; \
+ for f in x $$MAKEFLAGS; do \
+ case $$f in \
+ *=* | --[!k]*);; \
+ *k*) failcom='fail=yes';; \
+ esac; \
+ done; \
+ dot_seen=no; \
+ case "$@" in \
+ distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+ *) list='$(SUBDIRS)' ;; \
+ esac; \
+ rev=''; for subdir in $$list; do \
+ if test "$$subdir" = "."; then :; else \
+ rev="$$subdir $$rev"; \
+ fi; \
+ done; \
+ rev="$$rev ."; \
+ target=`echo $@ | sed s/-recursive//`; \
+ for subdir in $$rev; do \
+ echo "Making $$target in $$subdir"; \
+ if test "$$subdir" = "."; then \
+ local_target="$$target-am"; \
+ else \
+ local_target="$$target"; \
+ fi; \
+ ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+ || eval $$failcom; \
+ done && test -z "$$fail"
+tags-recursive:
+ list='$(SUBDIRS)'; for subdir in $$list; do \
+ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
+ done
+ctags-recursive:
+ list='$(SUBDIRS)'; for subdir in $$list; do \
+ test "$$subdir" = . || ($(am__cd) $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
+ done
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+ unique=`for i in $$list; do \
+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+ done | \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ mkid -fID $$unique
+tags: TAGS
+
+TAGS: tags-recursive $(HEADERS) $(SOURCES) config.h.in $(TAGS_DEPENDENCIES) \
+ $(TAGS_FILES) $(LISP)
+ set x; \
+ here=`pwd`; \
+ if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
+ include_option=--etags-include; \
+ empty_fix=.; \
+ else \
+ include_option=--include; \
+ empty_fix=; \
+ fi; \
+ list='$(SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ test ! -f $$subdir/TAGS || \
+ set "$$@" "$$include_option=$$here/$$subdir/TAGS"; \
+ fi; \
+ done; \
+ list='$(SOURCES) $(HEADERS) config.h.in $(LISP) $(TAGS_FILES)'; \
+ unique=`for i in $$list; do \
+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+ done | \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ shift; \
+ if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
+ test -n "$$unique" || unique=$$empty_fix; \
+ if test $$# -gt 0; then \
+ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+ "$$@" $$unique; \
+ else \
+ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+ $$unique; \
+ fi; \
+ fi
+ctags: CTAGS
+CTAGS: ctags-recursive $(HEADERS) $(SOURCES) config.h.in $(TAGS_DEPENDENCIES) \
+ $(TAGS_FILES) $(LISP)
+ list='$(SOURCES) $(HEADERS) config.h.in $(LISP) $(TAGS_FILES)'; \
+ unique=`for i in $$list; do \
+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+ done | \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ test -z "$(CTAGS_ARGS)$$unique" \
+ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+ $$unique
+
+GTAGS:
+ here=`$(am__cd) $(top_builddir) && pwd` \
+ && $(am__cd) $(top_srcdir) \
+ && gtags -i $(GTAGS_ARGS) "$$here"
+
+distclean-tags:
+ -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+ $(am__remove_distdir)
+ test -d "$(distdir)" || mkdir "$(distdir)"
+ @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ list='$(DISTFILES)'; \
+ dist_files=`for file in $$list; do echo $$file; done | \
+ sed -e "s|^$$srcdirstrip/||;t" \
+ -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+ case $$dist_files in \
+ */*) $(MKDIR_P) `echo "$$dist_files" | \
+ sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+ sort -u` ;; \
+ esac; \
+ for file in $$dist_files; do \
+ if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+ if test -d $$d/$$file; then \
+ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+ if test -d "$(distdir)/$$file"; then \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+ fi; \
+ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+ cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+ fi; \
+ cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
+ else \
+ test -f "$(distdir)/$$file" \
+ || cp -p $$d/$$file "$(distdir)/$$file" \
+ || exit 1; \
+ fi; \
+ done
+ @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ test -d "$(distdir)/$$subdir" \
+ || $(MKDIR_P) "$(distdir)/$$subdir" \
+ || exit 1; \
+ fi; \
+ done
+ @list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+ if test "$$subdir" = .; then :; else \
+ dir1=$$subdir; dir2="$(distdir)/$$subdir"; \
+ $(am__relativize); \
+ new_distdir=$$reldir; \
+ dir1=$$subdir; dir2="$(top_distdir)"; \
+ $(am__relativize); \
+ new_top_distdir=$$reldir; \
+ echo " (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) top_distdir="$$new_top_distdir" distdir="$$new_distdir" \\"; \
+ echo " am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)"; \
+ ($(am__cd) $$subdir && \
+ $(MAKE) $(AM_MAKEFLAGS) \
+ top_distdir="$$new_top_distdir" \
+ distdir="$$new_distdir" \
+ am__remove_distdir=: \
+ am__skip_length_check=: \
+ am__skip_mode_fix=: \
+ distdir) \
+ || exit 1; \
+ fi; \
+ done
+ $(MAKE) $(AM_MAKEFLAGS) \
+ top_distdir="$(top_distdir)" distdir="$(distdir)" \
+ dist-hook
+ -test -n "$(am__skip_mode_fix)" \
+ || find "$(distdir)" -type d ! -perm -755 \
+ -exec chmod u+rwx,go+rx {} \; -o \
+ ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
+ ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
+ ! -type d ! -perm -444 -exec $(install_sh) -c -m a+r {} {} \; \
+ || chmod -R a+r "$(distdir)"
+dist-gzip: distdir
+ tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
+ $(am__remove_distdir)
+
+dist-bzip2: distdir
+ tardir=$(distdir) && $(am__tar) | bzip2 -9 -c >$(distdir).tar.bz2
+ $(am__remove_distdir)
+
+dist-lzma: distdir
+ tardir=$(distdir) && $(am__tar) | lzma -9 -c >$(distdir).tar.lzma
+ $(am__remove_distdir)
+
+dist-xz: distdir
+ tardir=$(distdir) && $(am__tar) | xz -c >$(distdir).tar.xz
+ $(am__remove_distdir)
+
+dist-tarZ: distdir
+ tardir=$(distdir) && $(am__tar) | compress -c >$(distdir).tar.Z
+ $(am__remove_distdir)
+
+dist-shar: distdir
+ shar $(distdir) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).shar.gz
+ $(am__remove_distdir)
+
+dist-zip: distdir
+ -rm -f $(distdir).zip
+ zip -rq $(distdir).zip $(distdir)
+ $(am__remove_distdir)
+
+dist dist-all: distdir
+ tardir=$(distdir) && $(am__tar) | GZIP=$(GZIP_ENV) gzip -c >$(distdir).tar.gz
+ $(am__remove_distdir)
+
+# This target untars the dist file and tries a VPATH configuration. Then
+# it guarantees that the distribution is self-contained by making another
+# tarfile.
+distcheck: dist
+ case '$(DIST_ARCHIVES)' in \
+ *.tar.gz*) \
+ GZIP=$(GZIP_ENV) gzip -dc $(distdir).tar.gz | $(am__untar) ;;\
+ *.tar.bz2*) \
+ bzip2 -dc $(distdir).tar.bz2 | $(am__untar) ;;\
+ *.tar.lzma*) \
+ lzma -dc $(distdir).tar.lzma | $(am__untar) ;;\
+ *.tar.xz*) \
+ xz -dc $(distdir).tar.xz | $(am__untar) ;;\
+ *.tar.Z*) \
+ uncompress -c $(distdir).tar.Z | $(am__untar) ;;\
+ *.shar.gz*) \
+ GZIP=$(GZIP_ENV) gzip -dc $(distdir).shar.gz | unshar ;;\
+ *.zip*) \
+ unzip $(distdir).zip ;;\
+ esac
+ chmod -R a-w $(distdir); chmod u+w $(distdir)
+ mkdir $(distdir)/_build
+ mkdir $(distdir)/_inst
+ chmod a-w $(distdir)
+ test -d $(distdir)/_build || exit 0; \
+ dc_install_base=`$(am__cd) $(distdir)/_inst && pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
+ && dc_destdir="$${TMPDIR-/tmp}/am-dc-$$$$/" \
+ && am__cwd=`pwd` \
+ && $(am__cd) $(distdir)/_build \
+ && ../configure --srcdir=.. --prefix="$$dc_install_base" \
+ $(DISTCHECK_CONFIGURE_FLAGS) \
+ && $(MAKE) $(AM_MAKEFLAGS) \
+ && $(MAKE) $(AM_MAKEFLAGS) dvi \
+ && $(MAKE) $(AM_MAKEFLAGS) check \
+ && $(MAKE) $(AM_MAKEFLAGS) install \
+ && $(MAKE) $(AM_MAKEFLAGS) installcheck \
+ && $(MAKE) $(AM_MAKEFLAGS) uninstall \
+ && $(MAKE) $(AM_MAKEFLAGS) distuninstallcheck_dir="$$dc_install_base" \
+ distuninstallcheck \
+ && chmod -R a-w "$$dc_install_base" \
+ && ({ \
+ (cd ../.. && umask 077 && mkdir "$$dc_destdir") \
+ && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" install \
+ && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" uninstall \
+ && $(MAKE) $(AM_MAKEFLAGS) DESTDIR="$$dc_destdir" \
+ distuninstallcheck_dir="$$dc_destdir" distuninstallcheck; \
+ } || { rm -rf "$$dc_destdir"; exit 1; }) \
+ && rm -rf "$$dc_destdir" \
+ && $(MAKE) $(AM_MAKEFLAGS) dist \
+ && rm -rf $(DIST_ARCHIVES) \
+ && $(MAKE) $(AM_MAKEFLAGS) distcleancheck \
+ && cd "$$am__cwd" \
+ || exit 1
+ $(am__remove_distdir)
+ @(echo "$(distdir) archives ready for distribution: "; \
+ list='$(DIST_ARCHIVES)'; for i in $$list; do echo $$i; done) | \
+ sed -e 1h -e 1s/./=/g -e 1p -e 1x -e '$$p' -e '$$x'
+distuninstallcheck:
+ @$(am__cd) '$(distuninstallcheck_dir)' \
+ && test `$(distuninstallcheck_listfiles) | wc -l` -le 1 \
+ || { echo "ERROR: files left after uninstall:" ; \
+ if test -n "$(DESTDIR)"; then \
+ echo " (check DESTDIR support)"; \
+ fi ; \
+ $(distuninstallcheck_listfiles) ; \
+ exit 1; } >&2
+distcleancheck: distclean
+ @if test '$(srcdir)' = . ; then \
+ echo "ERROR: distcleancheck can only run from a VPATH build" ; \
+ exit 1 ; \
+ fi
+ @test `$(distcleancheck_listfiles) | wc -l` -eq 0 \
+ || { echo "ERROR: files left in build directory after distclean:" ; \
+ $(distcleancheck_listfiles) ; \
+ exit 1; } >&2
+check-am: all-am
+check: check-recursive
+all-am: Makefile $(PROGRAMS) config.h
+installdirs: installdirs-recursive
+installdirs-am:
+ for dir in "$(DESTDIR)$(bindir)"; do \
+ test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+ done
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+ @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+ $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+ `test -z '$(STRIP)' || \
+ echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+ -test -z "$(CLEANFILES)" || rm -f $(CLEANFILES)
+
+distclean-generic:
+ -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+ -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
+
+maintainer-clean-generic:
+ @echo "This command is intended for maintainers to use"
+ @echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-binPROGRAMS clean-generic clean-libtool mostlyclean-am
+
+distclean: distclean-recursive
+ -rm -f $(am__CONFIG_DISTCLEAN_FILES)
+ -rm -rf ./$(DEPDIR)
+ -rm -f Makefile
+distclean-am: clean-am distclean-compile distclean-generic \
+ distclean-hdr distclean-libtool distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+html: html-recursive
+
+html-am:
+
+info: info-recursive
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-recursive
+
+install-dvi-am:
+
+install-exec-am: install-binPROGRAMS
+
+install-html: install-html-recursive
+
+install-html-am:
+
+install-info: install-info-recursive
+
+install-info-am:
+
+install-man:
+
+install-pdf: install-pdf-recursive
+
+install-pdf-am:
+
+install-ps: install-ps-recursive
+
+install-ps-am:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+ -rm -f $(am__CONFIG_DISTCLEAN_FILES)
+ -rm -rf $(top_srcdir)/autom4te.cache
+ -rm -rf ./$(DEPDIR)
+ -rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+ mostlyclean-libtool
+
+pdf: pdf-recursive
+
+pdf-am:
+
+ps: ps-recursive
+
+ps-am:
+
+uninstall-am: uninstall-binPROGRAMS
+
+.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) all \
+ ctags-recursive install-am install-strip tags-recursive
+
+.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
+ all all-am am--refresh check check-am clean clean-binPROGRAMS \
+ clean-generic clean-libtool ctags ctags-recursive dist \
+ dist-all dist-bzip2 dist-gzip dist-hook dist-lzma dist-shar \
+ dist-tarZ dist-xz dist-zip distcheck distclean \
+ distclean-compile distclean-generic distclean-hdr \
+ distclean-libtool distclean-tags distcleancheck distdir \
+ distuninstallcheck dvi dvi-am html html-am info info-am \
+ install install-am install-binPROGRAMS install-data \
+ install-data-am install-dvi install-dvi-am install-exec \
+ install-exec-am install-html install-html-am install-info \
+ install-info-am install-man install-pdf install-pdf-am \
+ install-ps install-ps-am install-strip installcheck \
+ installcheck-am installdirs installdirs-am maintainer-clean \
+ maintainer-clean-generic mostlyclean mostlyclean-compile \
+ mostlyclean-generic mostlyclean-libtool pdf pdf-am ps ps-am \
+ tags tags-recursive uninstall uninstall-am \
+ uninstall-binPROGRAMS
+
+
+dist-hook:
+ chmod u+w $(distdir)/CREATED
+ echo "Distribution date: `date`" > CREATED
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/Process.cpp b/Process.cpp
new file mode 100644
index 0000000..1ff53f7
--- /dev/null
+++ b/Process.cpp
@@ -0,0 +1,31 @@
+#include "Process.h"
+
+#include <boost/lexical_cast.hpp>
+#include <boost/date_time.hpp>
+
+#include "util/Logger.h"
+
+namespace po=boost::program_options;
+
+using PLATO::Utility::Logger;
+using std::string;
+
+namespace PLATO{
+
+po::options_description& Process::addOptions(po::options_description& opts){
+ opt_ptr = &opts;
+ return appendOptions(opts);
+}
+
+void Process::run(PLATO::Data::DataSet& ds){
+ Logger::log(boost::lexical_cast<string>(boost::posix_time::second_clock::local_time())
+ + ": Starting " + getName());
+ process(ds);
+ PrintSummary();
+ Logger::log(boost::lexical_cast<string>(boost::posix_time::second_clock::local_time())
+ + ": Finished " + getName());
+}
+
+}
+
+
diff --git a/Process.h b/Process.h
new file mode 100644
index 0000000..5bf4aba
--- /dev/null
+++ b/Process.h
@@ -0,0 +1,68 @@
+#ifndef PROCESS_H
+#define PROCESS_H
+
+#include <string>
+
+#include <boost/program_options.hpp>
+
+#include "ProcessFactory.h"
+
+namespace PLATO{
+
+namespace Data{
+ class DataSet;
+}
+
+class Process{
+
+public:
+ Process() {}
+ virtual ~Process(){}
+
+ void run(PLATO::Data::DataSet&);
+ boost::program_options::options_description& addOptions(boost::program_options::options_description& opts);
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm) = 0;
+
+ void printHelp(std::ostream& o){if(opt_ptr){o << *opt_ptr;}}
+ virtual const std::string& getName() const = 0;
+ virtual const std::string& getDesc() const = 0;
+
+protected:
+ virtual void process(PLATO::Data::DataSet&) = 0;
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts) = 0;
+
+ virtual void PrintSummary(){};
+
+private:
+
+ boost::program_options::options_description* opt_ptr;
+};
+
+template <class T>
+class ProcessImpl : public virtual Process {
+public:
+ ProcessImpl(const std::string& n, const std::string& d) : Process(), _name(n), _desc(d) {}
+
+public:
+ static Process* create(){return new T();}
+ virtual const std::string& getName() const {return _name;}
+ virtual const std::string& getDesc() const {return _desc;}
+
+protected:
+ static const std::string& doRegister(const std::string& key_in);
+
+protected:
+ //PLATO::Data::DataSet* data_set;
+ std::string _name;
+ std::string _desc;
+};
+
+template<typename T>
+const std::string& ProcessImpl<T>::doRegister(const std::string& key_in){
+ return ProcessFactory::getFactory().RegisterProcess(key_in, &T::create);
+}
+
+}
+
+#endif
diff --git a/ProcessFactory.cpp b/ProcessFactory.cpp
new file mode 100644
index 0000000..8f64a31
--- /dev/null
+++ b/ProcessFactory.cpp
@@ -0,0 +1,23 @@
+#include "ProcessFactory.h"
+#include "Process.h"
+
+using std::string;
+using std::map;
+
+namespace PLATO{
+
+const string& ProcessFactory::RegisterProcess(const string& key, createFunc* ptr){
+ creation_map[key] = ptr;
+ return key;
+}
+
+Process* ProcessFactory::Create(const string& key){
+ map<string, createFunc*>::const_iterator it=creation_map.find(key);
+ if(it != creation_map.end()){
+ return (*it).second();
+ }else{
+ return NULL;
+ }
+}
+
+}
diff --git a/ProcessFactory.h b/ProcessFactory.h
new file mode 100644
index 0000000..da0a0ee
--- /dev/null
+++ b/ProcessFactory.h
@@ -0,0 +1,37 @@
+#ifndef PROCESS_FACTORY_H
+#define PROCESS_FACTORY_H
+
+#include <map>
+#include <string>
+
+namespace PLATO{
+
+class Process;
+
+typedef Process* (createFunc)();
+
+class ProcessFactory{
+public:
+ typedef std::map<const std::string, createFunc*>::const_iterator const_iterator;
+
+private:
+ ProcessFactory(){}
+ ProcessFactory(const ProcessFactory&);
+ ProcessFactory& operator=(const ProcessFactory&);
+
+public:
+ const std::string& RegisterProcess(const std::string& key, createFunc* ptr);
+ Process* Create(const std::string& key);
+
+ const_iterator begin() const{return creation_map.begin();}
+ const_iterator end() const{return creation_map.end();}
+
+ static ProcessFactory& getFactory(){static ProcessFactory f; return f;}
+
+private:
+ std::map<const std::string, createFunc*> creation_map;
+};
+
+}
+
+#endif
diff --git a/README.txt b/README.txt
new file mode 100644
index 0000000..db03c0d
--- /dev/null
+++ b/README.txt
@@ -0,0 +1,25 @@
+Building PLATO
+====================
+
+To build PLATO, from this directory, type:
+
+autoreconf -i
+mkdir -p build
+cd build
+../configure
+make
+make install
+
+You will need to have root permissions to execute "make install" with the
+default configure options. Additional helpful options that can be passed
+to configure are:
+
+--prefix=<directory>
+ This defines the directory to install PLATO into. PLATO will be copied
+ into $prefix/bin, and by default, the prefix is /usr/local.
+
+--enable-debug
+ This option enables all debugging symbols and warnings and turns off
+ any optimizations. This is helpful if you encounter a bug and would like
+ to fix it, but running in debug mode will likely result in MUCH slower
+ execution times.
diff --git a/aclocal.m4 b/aclocal.m4
new file mode 100644
index 0000000..fe2d43e
--- /dev/null
+++ b/aclocal.m4
@@ -0,0 +1,1126 @@
+# generated automatically by aclocal 1.11.1 -*- Autoconf -*-
+
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+# 2005, 2006, 2007, 2008, 2009 Free Software Foundation, Inc.
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+m4_ifndef([AC_AUTOCONF_VERSION],
+ [m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl
+m4_if(m4_defn([AC_AUTOCONF_VERSION]), [2.63],,
+[m4_warning([this file was generated for autoconf 2.63.
+You have another version of autoconf. It may work, but is not guaranteed to.
+If you have problems, you may need to regenerate the build system entirely.
+To do so, use the procedure documented by the package, typically `autoreconf'.])])
+
+# pkg.m4 - Macros to locate and utilise pkg-config. -*- Autoconf -*-
+#
+# Copyright © 2004 Scott James Remnant <scott at netsplit.com>.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# PKG_PROG_PKG_CONFIG([MIN-VERSION])
+# ----------------------------------
+AC_DEFUN([PKG_PROG_PKG_CONFIG],
+[m4_pattern_forbid([^_?PKG_[A-Z_]+$])
+m4_pattern_allow([^PKG_CONFIG(_PATH)?$])
+AC_ARG_VAR([PKG_CONFIG], [path to pkg-config utility])dnl
+if test "x$ac_cv_env_PKG_CONFIG_set" != "xset"; then
+ AC_PATH_TOOL([PKG_CONFIG], [pkg-config])
+fi
+if test -n "$PKG_CONFIG"; then
+ _pkg_min_version=m4_default([$1], [0.9.0])
+ AC_MSG_CHECKING([pkg-config is at least version $_pkg_min_version])
+ if $PKG_CONFIG --atleast-pkgconfig-version $_pkg_min_version; then
+ AC_MSG_RESULT([yes])
+ else
+ AC_MSG_RESULT([no])
+ PKG_CONFIG=""
+ fi
+
+fi[]dnl
+])# PKG_PROG_PKG_CONFIG
+
+# PKG_CHECK_EXISTS(MODULES, [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
+#
+# Check to see whether a particular set of modules exists. Similar
+# to PKG_CHECK_MODULES(), but does not set variables or print errors.
+#
+#
+# Similar to PKG_CHECK_MODULES, make sure that the first instance of
+# this or PKG_CHECK_MODULES is called, or make sure to call
+# PKG_CHECK_EXISTS manually
+# --------------------------------------------------------------
+AC_DEFUN([PKG_CHECK_EXISTS],
+[AC_REQUIRE([PKG_PROG_PKG_CONFIG])dnl
+if test -n "$PKG_CONFIG" && \
+ AC_RUN_LOG([$PKG_CONFIG --exists --print-errors "$1"]); then
+ m4_ifval([$2], [$2], [:])
+m4_ifvaln([$3], [else
+ $3])dnl
+fi])
+
+
+# _PKG_CONFIG([VARIABLE], [COMMAND], [MODULES])
+# ---------------------------------------------
+m4_define([_PKG_CONFIG],
+[if test -n "$$1"; then
+ pkg_cv_[]$1="$$1"
+ elif test -n "$PKG_CONFIG"; then
+ PKG_CHECK_EXISTS([$3],
+ [pkg_cv_[]$1=`$PKG_CONFIG --[]$2 "$3" 2>/dev/null`],
+ [pkg_failed=yes])
+ else
+ pkg_failed=untried
+fi[]dnl
+])# _PKG_CONFIG
+
+# _PKG_SHORT_ERRORS_SUPPORTED
+# -----------------------------
+AC_DEFUN([_PKG_SHORT_ERRORS_SUPPORTED],
+[AC_REQUIRE([PKG_PROG_PKG_CONFIG])
+if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then
+ _pkg_short_errors_supported=yes
+else
+ _pkg_short_errors_supported=no
+fi[]dnl
+])# _PKG_SHORT_ERRORS_SUPPORTED
+
+
+# PKG_CHECK_MODULES(VARIABLE-PREFIX, MODULES, [ACTION-IF-FOUND],
+# [ACTION-IF-NOT-FOUND])
+#
+#
+# Note that if there is a possibility the first call to
+# PKG_CHECK_MODULES might not happen, you should be sure to include an
+# explicit call to PKG_PROG_PKG_CONFIG in your configure.ac
+#
+#
+# --------------------------------------------------------------
+AC_DEFUN([PKG_CHECK_MODULES],
+[AC_REQUIRE([PKG_PROG_PKG_CONFIG])dnl
+AC_ARG_VAR([$1][_CFLAGS], [C compiler flags for $1, overriding pkg-config])dnl
+AC_ARG_VAR([$1][_LIBS], [linker flags for $1, overriding pkg-config])dnl
+
+pkg_failed=no
+AC_MSG_CHECKING([for $1])
+
+_PKG_CONFIG([$1][_CFLAGS], [cflags], [$2])
+_PKG_CONFIG([$1][_LIBS], [libs], [$2])
+
+m4_define([_PKG_TEXT], [Alternatively, you may set the environment variables $1[]_CFLAGS
+and $1[]_LIBS to avoid the need to call pkg-config.
+See the pkg-config man page for more details.])
+
+if test $pkg_failed = yes; then
+ _PKG_SHORT_ERRORS_SUPPORTED
+ if test $_pkg_short_errors_supported = yes; then
+ $1[]_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "$2" 2>&1`
+ else
+ $1[]_PKG_ERRORS=`$PKG_CONFIG --print-errors "$2" 2>&1`
+ fi
+ # Put the nasty error message in config.log where it belongs
+ echo "$$1[]_PKG_ERRORS" >&AS_MESSAGE_LOG_FD
+
+ ifelse([$4], , [AC_MSG_ERROR(dnl
+[Package requirements ($2) were not met:
+
+$$1_PKG_ERRORS
+
+Consider adjusting the PKG_CONFIG_PATH environment variable if you
+installed software in a non-standard prefix.
+
+_PKG_TEXT
+])],
+ [AC_MSG_RESULT([no])
+ $4])
+elif test $pkg_failed = untried; then
+ ifelse([$4], , [AC_MSG_FAILURE(dnl
+[The pkg-config script could not be found or is too old. Make sure it
+is in your PATH or set the PKG_CONFIG environment variable to the full
+path to pkg-config.
+
+_PKG_TEXT
+
+To get pkg-config, see <http://pkg-config.freedesktop.org/>.])],
+ [$4])
+else
+ $1[]_CFLAGS=$pkg_cv_[]$1[]_CFLAGS
+ $1[]_LIBS=$pkg_cv_[]$1[]_LIBS
+ AC_MSG_RESULT([yes])
+ ifelse([$3], , :, [$3])
+fi[]dnl
+])# PKG_CHECK_MODULES
+
+# Copyright (C) 2002, 2003, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# AM_AUTOMAKE_VERSION(VERSION)
+# ----------------------------
+# Automake X.Y traces this macro to ensure aclocal.m4 has been
+# generated from the m4 files accompanying Automake X.Y.
+# (This private macro should not be called outside this file.)
+AC_DEFUN([AM_AUTOMAKE_VERSION],
+[am__api_version='1.11'
+dnl Some users find AM_AUTOMAKE_VERSION and mistake it for a way to
+dnl require some minimum version. Point them to the right macro.
+m4_if([$1], [1.11.1], [],
+ [AC_FATAL([Do not call $0, use AM_INIT_AUTOMAKE([$1]).])])dnl
+])
+
+# _AM_AUTOCONF_VERSION(VERSION)
+# -----------------------------
+# aclocal traces this macro to find the Autoconf version.
+# This is a private macro too. Using m4_define simplifies
+# the logic in aclocal, which can simply ignore this definition.
+m4_define([_AM_AUTOCONF_VERSION], [])
+
+# AM_SET_CURRENT_AUTOMAKE_VERSION
+# -------------------------------
+# Call AM_AUTOMAKE_VERSION and AM_AUTOMAKE_VERSION so they can be traced.
+# This function is AC_REQUIREd by AM_INIT_AUTOMAKE.
+AC_DEFUN([AM_SET_CURRENT_AUTOMAKE_VERSION],
+[AM_AUTOMAKE_VERSION([1.11.1])dnl
+m4_ifndef([AC_AUTOCONF_VERSION],
+ [m4_copy([m4_PACKAGE_VERSION], [AC_AUTOCONF_VERSION])])dnl
+_AM_AUTOCONF_VERSION(m4_defn([AC_AUTOCONF_VERSION]))])
+
+# AM_AUX_DIR_EXPAND -*- Autoconf -*-
+
+# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# For projects using AC_CONFIG_AUX_DIR([foo]), Autoconf sets
+# $ac_aux_dir to `$srcdir/foo'. In other projects, it is set to
+# `$srcdir', `$srcdir/..', or `$srcdir/../..'.
+#
+# Of course, Automake must honor this variable whenever it calls a
+# tool from the auxiliary directory. The problem is that $srcdir (and
+# therefore $ac_aux_dir as well) can be either absolute or relative,
+# depending on how configure is run. This is pretty annoying, since
+# it makes $ac_aux_dir quite unusable in subdirectories: in the top
+# source directory, any form will work fine, but in subdirectories a
+# relative path needs to be adjusted first.
+#
+# $ac_aux_dir/missing
+# fails when called from a subdirectory if $ac_aux_dir is relative
+# $top_srcdir/$ac_aux_dir/missing
+# fails if $ac_aux_dir is absolute,
+# fails when called from a subdirectory in a VPATH build with
+# a relative $ac_aux_dir
+#
+# The reason of the latter failure is that $top_srcdir and $ac_aux_dir
+# are both prefixed by $srcdir. In an in-source build this is usually
+# harmless because $srcdir is `.', but things will broke when you
+# start a VPATH build or use an absolute $srcdir.
+#
+# So we could use something similar to $top_srcdir/$ac_aux_dir/missing,
+# iff we strip the leading $srcdir from $ac_aux_dir. That would be:
+# am_aux_dir='\$(top_srcdir)/'`expr "$ac_aux_dir" : "$srcdir//*\(.*\)"`
+# and then we would define $MISSING as
+# MISSING="\${SHELL} $am_aux_dir/missing"
+# This will work as long as MISSING is not called from configure, because
+# unfortunately $(top_srcdir) has no meaning in configure.
+# However there are other variables, like CC, which are often used in
+# configure, and could therefore not use this "fixed" $ac_aux_dir.
+#
+# Another solution, used here, is to always expand $ac_aux_dir to an
+# absolute PATH. The drawback is that using absolute paths prevent a
+# configured tree to be moved without reconfiguration.
+
+AC_DEFUN([AM_AUX_DIR_EXPAND],
+[dnl Rely on autoconf to set up CDPATH properly.
+AC_PREREQ([2.50])dnl
+# expand $ac_aux_dir to an absolute path
+am_aux_dir=`cd $ac_aux_dir && pwd`
+])
+
+# AM_CONDITIONAL -*- Autoconf -*-
+
+# Copyright (C) 1997, 2000, 2001, 2003, 2004, 2005, 2006, 2008
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 9
+
+# AM_CONDITIONAL(NAME, SHELL-CONDITION)
+# -------------------------------------
+# Define a conditional.
+AC_DEFUN([AM_CONDITIONAL],
+[AC_PREREQ(2.52)dnl
+ ifelse([$1], [TRUE], [AC_FATAL([$0: invalid condition: $1])],
+ [$1], [FALSE], [AC_FATAL([$0: invalid condition: $1])])dnl
+AC_SUBST([$1_TRUE])dnl
+AC_SUBST([$1_FALSE])dnl
+_AM_SUBST_NOTMAKE([$1_TRUE])dnl
+_AM_SUBST_NOTMAKE([$1_FALSE])dnl
+m4_define([_AM_COND_VALUE_$1], [$2])dnl
+if $2; then
+ $1_TRUE=
+ $1_FALSE='#'
+else
+ $1_TRUE='#'
+ $1_FALSE=
+fi
+AC_CONFIG_COMMANDS_PRE(
+[if test -z "${$1_TRUE}" && test -z "${$1_FALSE}"; then
+ AC_MSG_ERROR([[conditional "$1" was never defined.
+Usually this means the macro was only invoked conditionally.]])
+fi])])
+
+# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2009
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 10
+
+# There are a few dirty hacks below to avoid letting `AC_PROG_CC' be
+# written in clear, in which case automake, when reading aclocal.m4,
+# will think it sees a *use*, and therefore will trigger all it's
+# C support machinery. Also note that it means that autoscan, seeing
+# CC etc. in the Makefile, will ask for an AC_PROG_CC use...
+
+
+# _AM_DEPENDENCIES(NAME)
+# ----------------------
+# See how the compiler implements dependency checking.
+# NAME is "CC", "CXX", "GCJ", or "OBJC".
+# We try a few techniques and use that to set a single cache variable.
+#
+# We don't AC_REQUIRE the corresponding AC_PROG_CC since the latter was
+# modified to invoke _AM_DEPENDENCIES(CC); we would have a circular
+# dependency, and given that the user is not expected to run this macro,
+# just rely on AC_PROG_CC.
+AC_DEFUN([_AM_DEPENDENCIES],
+[AC_REQUIRE([AM_SET_DEPDIR])dnl
+AC_REQUIRE([AM_OUTPUT_DEPENDENCY_COMMANDS])dnl
+AC_REQUIRE([AM_MAKE_INCLUDE])dnl
+AC_REQUIRE([AM_DEP_TRACK])dnl
+
+ifelse([$1], CC, [depcc="$CC" am_compiler_list=],
+ [$1], CXX, [depcc="$CXX" am_compiler_list=],
+ [$1], OBJC, [depcc="$OBJC" am_compiler_list='gcc3 gcc'],
+ [$1], UPC, [depcc="$UPC" am_compiler_list=],
+ [$1], GCJ, [depcc="$GCJ" am_compiler_list='gcc3 gcc'],
+ [depcc="$$1" am_compiler_list=])
+
+AC_CACHE_CHECK([dependency style of $depcc],
+ [am_cv_$1_dependencies_compiler_type],
+[if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
+ # We make a subdir and do the tests there. Otherwise we can end up
+ # making bogus files that we don't know about and never remove. For
+ # instance it was reported that on HP-UX the gcc test will end up
+ # making a dummy file named `D' -- because `-MD' means `put the output
+ # in D'.
+ mkdir conftest.dir
+ # Copy depcomp to subdir because otherwise we won't find it if we're
+ # using a relative directory.
+ cp "$am_depcomp" conftest.dir
+ cd conftest.dir
+ # We will build objects and dependencies in a subdirectory because
+ # it helps to detect inapplicable dependency modes. For instance
+ # both Tru64's cc and ICC support -MD to output dependencies as a
+ # side effect of compilation, but ICC will put the dependencies in
+ # the current directory while Tru64 will put them in the object
+ # directory.
+ mkdir sub
+
+ am_cv_$1_dependencies_compiler_type=none
+ if test "$am_compiler_list" = ""; then
+ am_compiler_list=`sed -n ['s/^#*\([a-zA-Z0-9]*\))$/\1/p'] < ./depcomp`
+ fi
+ am__universal=false
+ m4_case([$1], [CC],
+ [case " $depcc " in #(
+ *\ -arch\ *\ -arch\ *) am__universal=true ;;
+ esac],
+ [CXX],
+ [case " $depcc " in #(
+ *\ -arch\ *\ -arch\ *) am__universal=true ;;
+ esac])
+
+ for depmode in $am_compiler_list; do
+ # Setup a source with many dependencies, because some compilers
+ # like to wrap large dependency lists on column 80 (with \), and
+ # we should not choose a depcomp mode which is confused by this.
+ #
+ # We need to recreate these files for each test, as the compiler may
+ # overwrite some of them when testing with obscure command lines.
+ # This happens at least with the AIX C compiler.
+ : > sub/conftest.c
+ for i in 1 2 3 4 5 6; do
+ echo '#include "conftst'$i'.h"' >> sub/conftest.c
+ # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with
+ # Solaris 8's {/usr,}/bin/sh.
+ touch sub/conftst$i.h
+ done
+ echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
+
+ # We check with `-c' and `-o' for the sake of the "dashmstdout"
+ # mode. It turns out that the SunPro C++ compiler does not properly
+ # handle `-M -o', and we need to detect this. Also, some Intel
+ # versions had trouble with output in subdirs
+ am__obj=sub/conftest.${OBJEXT-o}
+ am__minus_obj="-o $am__obj"
+ case $depmode in
+ gcc)
+ # This depmode causes a compiler race in universal mode.
+ test "$am__universal" = false || continue
+ ;;
+ nosideeffect)
+ # after this tag, mechanisms are not by side-effect, so they'll
+ # only be used when explicitly requested
+ if test "x$enable_dependency_tracking" = xyes; then
+ continue
+ else
+ break
+ fi
+ ;;
+ msvisualcpp | msvcmsys)
+ # This compiler won't grok `-c -o', but also, the minuso test has
+ # not run yet. These depmodes are late enough in the game, and
+ # so weak that their functioning should not be impacted.
+ am__obj=conftest.${OBJEXT-o}
+ am__minus_obj=
+ ;;
+ none) break ;;
+ esac
+ if depmode=$depmode \
+ source=sub/conftest.c object=$am__obj \
+ depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
+ $SHELL ./depcomp $depcc -c $am__minus_obj sub/conftest.c \
+ >/dev/null 2>conftest.err &&
+ grep sub/conftst1.h sub/conftest.Po > /dev/null 2>&1 &&
+ grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
+ grep $am__obj sub/conftest.Po > /dev/null 2>&1 &&
+ ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
+ # icc doesn't choke on unknown options, it will just issue warnings
+ # or remarks (even with -Werror). So we grep stderr for any message
+ # that says an option was ignored or not supported.
+ # When given -MP, icc 7.0 and 7.1 complain thusly:
+ # icc: Command line warning: ignoring option '-M'; no argument required
+ # The diagnosis changed in icc 8.0:
+ # icc: Command line remark: option '-MP' not supported
+ if (grep 'ignoring option' conftest.err ||
+ grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else
+ am_cv_$1_dependencies_compiler_type=$depmode
+ break
+ fi
+ fi
+ done
+
+ cd ..
+ rm -rf conftest.dir
+else
+ am_cv_$1_dependencies_compiler_type=none
+fi
+])
+AC_SUBST([$1DEPMODE], [depmode=$am_cv_$1_dependencies_compiler_type])
+AM_CONDITIONAL([am__fastdep$1], [
+ test "x$enable_dependency_tracking" != xno \
+ && test "$am_cv_$1_dependencies_compiler_type" = gcc3])
+])
+
+
+# AM_SET_DEPDIR
+# -------------
+# Choose a directory name for dependency files.
+# This macro is AC_REQUIREd in _AM_DEPENDENCIES
+AC_DEFUN([AM_SET_DEPDIR],
+[AC_REQUIRE([AM_SET_LEADING_DOT])dnl
+AC_SUBST([DEPDIR], ["${am__leading_dot}deps"])dnl
+])
+
+
+# AM_DEP_TRACK
+# ------------
+AC_DEFUN([AM_DEP_TRACK],
+[AC_ARG_ENABLE(dependency-tracking,
+[ --disable-dependency-tracking speeds up one-time build
+ --enable-dependency-tracking do not reject slow dependency extractors])
+if test "x$enable_dependency_tracking" != xno; then
+ am_depcomp="$ac_aux_dir/depcomp"
+ AMDEPBACKSLASH='\'
+fi
+AM_CONDITIONAL([AMDEP], [test "x$enable_dependency_tracking" != xno])
+AC_SUBST([AMDEPBACKSLASH])dnl
+_AM_SUBST_NOTMAKE([AMDEPBACKSLASH])dnl
+])
+
+# Generate code to set up dependency tracking. -*- Autoconf -*-
+
+# Copyright (C) 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2008
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+#serial 5
+
+# _AM_OUTPUT_DEPENDENCY_COMMANDS
+# ------------------------------
+AC_DEFUN([_AM_OUTPUT_DEPENDENCY_COMMANDS],
+[{
+ # Autoconf 2.62 quotes --file arguments for eval, but not when files
+ # are listed without --file. Let's play safe and only enable the eval
+ # if we detect the quoting.
+ case $CONFIG_FILES in
+ *\'*) eval set x "$CONFIG_FILES" ;;
+ *) set x $CONFIG_FILES ;;
+ esac
+ shift
+ for mf
+ do
+ # Strip MF so we end up with the name of the file.
+ mf=`echo "$mf" | sed -e 's/:.*$//'`
+ # Check whether this is an Automake generated Makefile or not.
+ # We used to match only the files named `Makefile.in', but
+ # some people rename them; so instead we look at the file content.
+ # Grep'ing the first line is not enough: some people post-process
+ # each Makefile.in and add a new line on top of each file to say so.
+ # Grep'ing the whole file is not good either: AIX grep has a line
+ # limit of 2048, but all sed's we know have understand at least 4000.
+ if sed -n 's,^#.*generated by automake.*,X,p' "$mf" | grep X >/dev/null 2>&1; then
+ dirpart=`AS_DIRNAME("$mf")`
+ else
+ continue
+ fi
+ # Extract the definition of DEPDIR, am__include, and am__quote
+ # from the Makefile without running `make'.
+ DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
+ test -z "$DEPDIR" && continue
+ am__include=`sed -n 's/^am__include = //p' < "$mf"`
+ test -z "am__include" && continue
+ am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
+ # When using ansi2knr, U may be empty or an underscore; expand it
+ U=`sed -n 's/^U = //p' < "$mf"`
+ # Find all dependency output files, they are included files with
+ # $(DEPDIR) in their names. We invoke sed twice because it is the
+ # simplest approach to changing $(DEPDIR) to its actual value in the
+ # expansion.
+ for file in `sed -n "
+ s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \
+ sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
+ # Make sure the directory exists.
+ test -f "$dirpart/$file" && continue
+ fdir=`AS_DIRNAME(["$file"])`
+ AS_MKDIR_P([$dirpart/$fdir])
+ # echo "creating $dirpart/$file"
+ echo '# dummy' > "$dirpart/$file"
+ done
+ done
+}
+])# _AM_OUTPUT_DEPENDENCY_COMMANDS
+
+
+# AM_OUTPUT_DEPENDENCY_COMMANDS
+# -----------------------------
+# This macro should only be invoked once -- use via AC_REQUIRE.
+#
+# This code is only required when automatic dependency tracking
+# is enabled. FIXME. This creates each `.P' file that we will
+# need in order to bootstrap the dependency handling code.
+AC_DEFUN([AM_OUTPUT_DEPENDENCY_COMMANDS],
+[AC_CONFIG_COMMANDS([depfiles],
+ [test x"$AMDEP_TRUE" != x"" || _AM_OUTPUT_DEPENDENCY_COMMANDS],
+ [AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"])
+])
+
+# Do all the work for Automake. -*- Autoconf -*-
+
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
+# 2005, 2006, 2008, 2009 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 16
+
+# This macro actually does too much. Some checks are only needed if
+# your package does certain things. But this isn't really a big deal.
+
+# AM_INIT_AUTOMAKE(PACKAGE, VERSION, [NO-DEFINE])
+# AM_INIT_AUTOMAKE([OPTIONS])
+# -----------------------------------------------
+# The call with PACKAGE and VERSION arguments is the old style
+# call (pre autoconf-2.50), which is being phased out. PACKAGE
+# and VERSION should now be passed to AC_INIT and removed from
+# the call to AM_INIT_AUTOMAKE.
+# We support both call styles for the transition. After
+# the next Automake release, Autoconf can make the AC_INIT
+# arguments mandatory, and then we can depend on a new Autoconf
+# release and drop the old call support.
+AC_DEFUN([AM_INIT_AUTOMAKE],
+[AC_PREREQ([2.62])dnl
+dnl Autoconf wants to disallow AM_ names. We explicitly allow
+dnl the ones we care about.
+m4_pattern_allow([^AM_[A-Z]+FLAGS$])dnl
+AC_REQUIRE([AM_SET_CURRENT_AUTOMAKE_VERSION])dnl
+AC_REQUIRE([AC_PROG_INSTALL])dnl
+if test "`cd $srcdir && pwd`" != "`pwd`"; then
+ # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
+ # is not polluted with repeated "-I."
+ AC_SUBST([am__isrc], [' -I$(srcdir)'])_AM_SUBST_NOTMAKE([am__isrc])dnl
+ # test to see if srcdir already configured
+ if test -f $srcdir/config.status; then
+ AC_MSG_ERROR([source directory already configured; run "make distclean" there first])
+ fi
+fi
+
+# test whether we have cygpath
+if test -z "$CYGPATH_W"; then
+ if (cygpath --version) >/dev/null 2>/dev/null; then
+ CYGPATH_W='cygpath -w'
+ else
+ CYGPATH_W=echo
+ fi
+fi
+AC_SUBST([CYGPATH_W])
+
+# Define the identity of the package.
+dnl Distinguish between old-style and new-style calls.
+m4_ifval([$2],
+[m4_ifval([$3], [_AM_SET_OPTION([no-define])])dnl
+ AC_SUBST([PACKAGE], [$1])dnl
+ AC_SUBST([VERSION], [$2])],
+[_AM_SET_OPTIONS([$1])dnl
+dnl Diagnose old-style AC_INIT with new-style AM_AUTOMAKE_INIT.
+m4_if(m4_ifdef([AC_PACKAGE_NAME], 1)m4_ifdef([AC_PACKAGE_VERSION], 1), 11,,
+ [m4_fatal([AC_INIT should be called with package and version arguments])])dnl
+ AC_SUBST([PACKAGE], ['AC_PACKAGE_TARNAME'])dnl
+ AC_SUBST([VERSION], ['AC_PACKAGE_VERSION'])])dnl
+
+_AM_IF_OPTION([no-define],,
+[AC_DEFINE_UNQUOTED(PACKAGE, "$PACKAGE", [Name of package])
+ AC_DEFINE_UNQUOTED(VERSION, "$VERSION", [Version number of package])])dnl
+
+# Some tools Automake needs.
+AC_REQUIRE([AM_SANITY_CHECK])dnl
+AC_REQUIRE([AC_ARG_PROGRAM])dnl
+AM_MISSING_PROG(ACLOCAL, aclocal-${am__api_version})
+AM_MISSING_PROG(AUTOCONF, autoconf)
+AM_MISSING_PROG(AUTOMAKE, automake-${am__api_version})
+AM_MISSING_PROG(AUTOHEADER, autoheader)
+AM_MISSING_PROG(MAKEINFO, makeinfo)
+AC_REQUIRE([AM_PROG_INSTALL_SH])dnl
+AC_REQUIRE([AM_PROG_INSTALL_STRIP])dnl
+AC_REQUIRE([AM_PROG_MKDIR_P])dnl
+# We need awk for the "check" target. The system "awk" is bad on
+# some platforms.
+AC_REQUIRE([AC_PROG_AWK])dnl
+AC_REQUIRE([AC_PROG_MAKE_SET])dnl
+AC_REQUIRE([AM_SET_LEADING_DOT])dnl
+_AM_IF_OPTION([tar-ustar], [_AM_PROG_TAR([ustar])],
+ [_AM_IF_OPTION([tar-pax], [_AM_PROG_TAR([pax])],
+ [_AM_PROG_TAR([v7])])])
+_AM_IF_OPTION([no-dependencies],,
+[AC_PROVIDE_IFELSE([AC_PROG_CC],
+ [_AM_DEPENDENCIES(CC)],
+ [define([AC_PROG_CC],
+ defn([AC_PROG_CC])[_AM_DEPENDENCIES(CC)])])dnl
+AC_PROVIDE_IFELSE([AC_PROG_CXX],
+ [_AM_DEPENDENCIES(CXX)],
+ [define([AC_PROG_CXX],
+ defn([AC_PROG_CXX])[_AM_DEPENDENCIES(CXX)])])dnl
+AC_PROVIDE_IFELSE([AC_PROG_OBJC],
+ [_AM_DEPENDENCIES(OBJC)],
+ [define([AC_PROG_OBJC],
+ defn([AC_PROG_OBJC])[_AM_DEPENDENCIES(OBJC)])])dnl
+])
+_AM_IF_OPTION([silent-rules], [AC_REQUIRE([AM_SILENT_RULES])])dnl
+dnl The `parallel-tests' driver may need to know about EXEEXT, so add the
+dnl `am__EXEEXT' conditional if _AM_COMPILER_EXEEXT was seen. This macro
+dnl is hooked onto _AC_COMPILER_EXEEXT early, see below.
+AC_CONFIG_COMMANDS_PRE(dnl
+[m4_provide_if([_AM_COMPILER_EXEEXT],
+ [AM_CONDITIONAL([am__EXEEXT], [test -n "$EXEEXT"])])])dnl
+])
+
+dnl Hook into `_AC_COMPILER_EXEEXT' early to learn its expansion. Do not
+dnl add the conditional right here, as _AC_COMPILER_EXEEXT may be further
+dnl mangled by Autoconf and run in a shell conditional statement.
+m4_define([_AC_COMPILER_EXEEXT],
+m4_defn([_AC_COMPILER_EXEEXT])[m4_provide([_AM_COMPILER_EXEEXT])])
+
+
+# When config.status generates a header, we must update the stamp-h file.
+# This file resides in the same directory as the config header
+# that is generated. The stamp files are numbered to have different names.
+
+# Autoconf calls _AC_AM_CONFIG_HEADER_HOOK (when defined) in the
+# loop where config.status creates the headers, so we can generate
+# our stamp files there.
+AC_DEFUN([_AC_AM_CONFIG_HEADER_HOOK],
+[# Compute $1's index in $config_headers.
+_am_arg=$1
+_am_stamp_count=1
+for _am_header in $config_headers :; do
+ case $_am_header in
+ $_am_arg | $_am_arg:* )
+ break ;;
+ * )
+ _am_stamp_count=`expr $_am_stamp_count + 1` ;;
+ esac
+done
+echo "timestamp for $_am_arg" >`AS_DIRNAME(["$_am_arg"])`/stamp-h[]$_am_stamp_count])
+
+# Copyright (C) 2001, 2003, 2005, 2008 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# AM_PROG_INSTALL_SH
+# ------------------
+# Define $install_sh.
+AC_DEFUN([AM_PROG_INSTALL_SH],
+[AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl
+if test x"${install_sh}" != xset; then
+ case $am_aux_dir in
+ *\ * | *\ *)
+ install_sh="\${SHELL} '$am_aux_dir/install-sh'" ;;
+ *)
+ install_sh="\${SHELL} $am_aux_dir/install-sh"
+ esac
+fi
+AC_SUBST(install_sh)])
+
+# Copyright (C) 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 2
+
+# Check whether the underlying file-system supports filenames
+# with a leading dot. For instance MS-DOS doesn't.
+AC_DEFUN([AM_SET_LEADING_DOT],
+[rm -rf .tst 2>/dev/null
+mkdir .tst 2>/dev/null
+if test -d .tst; then
+ am__leading_dot=.
+else
+ am__leading_dot=_
+fi
+rmdir .tst 2>/dev/null
+AC_SUBST([am__leading_dot])])
+
+# Check to see how 'make' treats includes. -*- Autoconf -*-
+
+# Copyright (C) 2001, 2002, 2003, 2005, 2009 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 4
+
+# AM_MAKE_INCLUDE()
+# -----------------
+# Check to see how make treats includes.
+AC_DEFUN([AM_MAKE_INCLUDE],
+[am_make=${MAKE-make}
+cat > confinc << 'END'
+am__doit:
+ @echo this is the am__doit target
+.PHONY: am__doit
+END
+# If we don't find an include directive, just comment out the code.
+AC_MSG_CHECKING([for style of include used by $am_make])
+am__include="#"
+am__quote=
+_am_result=none
+# First try GNU make style include.
+echo "include confinc" > confmf
+# Ignore all kinds of additional output from `make'.
+case `$am_make -s -f confmf 2> /dev/null` in #(
+*the\ am__doit\ target*)
+ am__include=include
+ am__quote=
+ _am_result=GNU
+ ;;
+esac
+# Now try BSD make style include.
+if test "$am__include" = "#"; then
+ echo '.include "confinc"' > confmf
+ case `$am_make -s -f confmf 2> /dev/null` in #(
+ *the\ am__doit\ target*)
+ am__include=.include
+ am__quote="\""
+ _am_result=BSD
+ ;;
+ esac
+fi
+AC_SUBST([am__include])
+AC_SUBST([am__quote])
+AC_MSG_RESULT([$_am_result])
+rm -f confinc confmf
+])
+
+# Fake the existence of programs that GNU maintainers use. -*- Autoconf -*-
+
+# Copyright (C) 1997, 1999, 2000, 2001, 2003, 2004, 2005, 2008
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 6
+
+# AM_MISSING_PROG(NAME, PROGRAM)
+# ------------------------------
+AC_DEFUN([AM_MISSING_PROG],
+[AC_REQUIRE([AM_MISSING_HAS_RUN])
+$1=${$1-"${am_missing_run}$2"}
+AC_SUBST($1)])
+
+
+# AM_MISSING_HAS_RUN
+# ------------------
+# Define MISSING if not defined so far and test if it supports --run.
+# If it does, set am_missing_run to use it, otherwise, to nothing.
+AC_DEFUN([AM_MISSING_HAS_RUN],
+[AC_REQUIRE([AM_AUX_DIR_EXPAND])dnl
+AC_REQUIRE_AUX_FILE([missing])dnl
+if test x"${MISSING+set}" != xset; then
+ case $am_aux_dir in
+ *\ * | *\ *)
+ MISSING="\${SHELL} \"$am_aux_dir/missing\"" ;;
+ *)
+ MISSING="\${SHELL} $am_aux_dir/missing" ;;
+ esac
+fi
+# Use eval to expand $SHELL
+if eval "$MISSING --run true"; then
+ am_missing_run="$MISSING --run "
+else
+ am_missing_run=
+ AC_MSG_WARN([`missing' script is too old or missing])
+fi
+])
+
+# Copyright (C) 2003, 2004, 2005, 2006 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# AM_PROG_MKDIR_P
+# ---------------
+# Check for `mkdir -p'.
+AC_DEFUN([AM_PROG_MKDIR_P],
+[AC_PREREQ([2.60])dnl
+AC_REQUIRE([AC_PROG_MKDIR_P])dnl
+dnl Automake 1.8 to 1.9.6 used to define mkdir_p. We now use MKDIR_P,
+dnl while keeping a definition of mkdir_p for backward compatibility.
+dnl @MKDIR_P@ is magic: AC_OUTPUT adjusts its value for each Makefile.
+dnl However we cannot define mkdir_p as $(MKDIR_P) for the sake of
+dnl Makefile.ins that do not define MKDIR_P, so we do our own
+dnl adjustment using top_builddir (which is defined more often than
+dnl MKDIR_P).
+AC_SUBST([mkdir_p], ["$MKDIR_P"])dnl
+case $mkdir_p in
+ [[\\/$]]* | ?:[[\\/]]*) ;;
+ */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;;
+esac
+])
+
+# Helper functions for option handling. -*- Autoconf -*-
+
+# Copyright (C) 2001, 2002, 2003, 2005, 2008 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 4
+
+# _AM_MANGLE_OPTION(NAME)
+# -----------------------
+AC_DEFUN([_AM_MANGLE_OPTION],
+[[_AM_OPTION_]m4_bpatsubst($1, [[^a-zA-Z0-9_]], [_])])
+
+# _AM_SET_OPTION(NAME)
+# ------------------------------
+# Set option NAME. Presently that only means defining a flag for this option.
+AC_DEFUN([_AM_SET_OPTION],
+[m4_define(_AM_MANGLE_OPTION([$1]), 1)])
+
+# _AM_SET_OPTIONS(OPTIONS)
+# ----------------------------------
+# OPTIONS is a space-separated list of Automake options.
+AC_DEFUN([_AM_SET_OPTIONS],
+[m4_foreach_w([_AM_Option], [$1], [_AM_SET_OPTION(_AM_Option)])])
+
+# _AM_IF_OPTION(OPTION, IF-SET, [IF-NOT-SET])
+# -------------------------------------------
+# Execute IF-SET if OPTION is set, IF-NOT-SET otherwise.
+AC_DEFUN([_AM_IF_OPTION],
+[m4_ifset(_AM_MANGLE_OPTION([$1]), [$2], [$3])])
+
+# Check to make sure that the build environment is sane. -*- Autoconf -*-
+
+# Copyright (C) 1996, 1997, 2000, 2001, 2003, 2005, 2008
+# Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 5
+
+# AM_SANITY_CHECK
+# ---------------
+AC_DEFUN([AM_SANITY_CHECK],
+[AC_MSG_CHECKING([whether build environment is sane])
+# Just in case
+sleep 1
+echo timestamp > conftest.file
+# Reject unsafe characters in $srcdir or the absolute working directory
+# name. Accept space and tab only in the latter.
+am_lf='
+'
+case `pwd` in
+ *[[\\\"\#\$\&\'\`$am_lf]]*)
+ AC_MSG_ERROR([unsafe absolute working directory name]);;
+esac
+case $srcdir in
+ *[[\\\"\#\$\&\'\`$am_lf\ \ ]]*)
+ AC_MSG_ERROR([unsafe srcdir value: `$srcdir']);;
+esac
+
+# Do `set' in a subshell so we don't clobber the current shell's
+# arguments. Must try -L first in case configure is actually a
+# symlink; some systems play weird games with the mod time of symlinks
+# (eg FreeBSD returns the mod time of the symlink's containing
+# directory).
+if (
+ set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
+ if test "$[*]" = "X"; then
+ # -L didn't work.
+ set X `ls -t "$srcdir/configure" conftest.file`
+ fi
+ rm -f conftest.file
+ if test "$[*]" != "X $srcdir/configure conftest.file" \
+ && test "$[*]" != "X conftest.file $srcdir/configure"; then
+
+ # If neither matched, then we have a broken ls. This can happen
+ # if, for instance, CONFIG_SHELL is bash and it inherits a
+ # broken ls alias from the environment. This has actually
+ # happened. Such a system could not be considered "sane".
+ AC_MSG_ERROR([ls -t appears to fail. Make sure there is not a broken
+alias in your environment])
+ fi
+
+ test "$[2]" = conftest.file
+ )
+then
+ # Ok.
+ :
+else
+ AC_MSG_ERROR([newly created file is older than distributed files!
+Check your system clock])
+fi
+AC_MSG_RESULT(yes)])
+
+# Copyright (C) 2001, 2003, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# AM_PROG_INSTALL_STRIP
+# ---------------------
+# One issue with vendor `install' (even GNU) is that you can't
+# specify the program used to strip binaries. This is especially
+# annoying in cross-compiling environments, where the build's strip
+# is unlikely to handle the host's binaries.
+# Fortunately install-sh will honor a STRIPPROG variable, so we
+# always use install-sh in `make install-strip', and initialize
+# STRIPPROG with the value of the STRIP variable (set by the user).
+AC_DEFUN([AM_PROG_INSTALL_STRIP],
+[AC_REQUIRE([AM_PROG_INSTALL_SH])dnl
+# Installed binaries are usually stripped using `strip' when the user
+# run `make install-strip'. However `strip' might not be the right
+# tool to use in cross-compilation environments, therefore Automake
+# will honor the `STRIP' environment variable to overrule this program.
+dnl Don't test for $cross_compiling = yes, because it might be `maybe'.
+if test "$cross_compiling" != no; then
+ AC_CHECK_TOOL([STRIP], [strip], :)
+fi
+INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s"
+AC_SUBST([INSTALL_STRIP_PROGRAM])])
+
+# Copyright (C) 2006, 2008 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 2
+
+# _AM_SUBST_NOTMAKE(VARIABLE)
+# ---------------------------
+# Prevent Automake from outputting VARIABLE = @VARIABLE@ in Makefile.in.
+# This macro is traced by Automake.
+AC_DEFUN([_AM_SUBST_NOTMAKE])
+
+# AM_SUBST_NOTMAKE(VARIABLE)
+# ---------------------------
+# Public sister of _AM_SUBST_NOTMAKE.
+AC_DEFUN([AM_SUBST_NOTMAKE], [_AM_SUBST_NOTMAKE($@)])
+
+# Check how to create a tarball. -*- Autoconf -*-
+
+# Copyright (C) 2004, 2005 Free Software Foundation, Inc.
+#
+# This file is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# serial 2
+
+# _AM_PROG_TAR(FORMAT)
+# --------------------
+# Check how to create a tarball in format FORMAT.
+# FORMAT should be one of `v7', `ustar', or `pax'.
+#
+# Substitute a variable $(am__tar) that is a command
+# writing to stdout a FORMAT-tarball containing the directory
+# $tardir.
+# tardir=directory && $(am__tar) > result.tar
+#
+# Substitute a variable $(am__untar) that extract such
+# a tarball read from stdin.
+# $(am__untar) < result.tar
+AC_DEFUN([_AM_PROG_TAR],
+[# Always define AMTAR for backward compatibility.
+AM_MISSING_PROG([AMTAR], [tar])
+m4_if([$1], [v7],
+ [am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -'],
+ [m4_case([$1], [ustar],, [pax],,
+ [m4_fatal([Unknown tar format])])
+AC_MSG_CHECKING([how to create a $1 tar archive])
+# Loop over all known methods to create a tar archive until one works.
+_am_tools='gnutar m4_if([$1], [ustar], [plaintar]) pax cpio none'
+_am_tools=${am_cv_prog_tar_$1-$_am_tools}
+# Do not fold the above two line into one, because Tru64 sh and
+# Solaris sh will not grok spaces in the rhs of `-'.
+for _am_tool in $_am_tools
+do
+ case $_am_tool in
+ gnutar)
+ for _am_tar in tar gnutar gtar;
+ do
+ AM_RUN_LOG([$_am_tar --version]) && break
+ done
+ am__tar="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$$tardir"'
+ am__tar_="$_am_tar --format=m4_if([$1], [pax], [posix], [$1]) -chf - "'"$tardir"'
+ am__untar="$_am_tar -xf -"
+ ;;
+ plaintar)
+ # Must skip GNU tar: if it does not support --format= it doesn't create
+ # ustar tarball either.
+ (tar --version) >/dev/null 2>&1 && continue
+ am__tar='tar chf - "$$tardir"'
+ am__tar_='tar chf - "$tardir"'
+ am__untar='tar xf -'
+ ;;
+ pax)
+ am__tar='pax -L -x $1 -w "$$tardir"'
+ am__tar_='pax -L -x $1 -w "$tardir"'
+ am__untar='pax -r'
+ ;;
+ cpio)
+ am__tar='find "$$tardir" -print | cpio -o -H $1 -L'
+ am__tar_='find "$tardir" -print | cpio -o -H $1 -L'
+ am__untar='cpio -i -H $1 -d'
+ ;;
+ none)
+ am__tar=false
+ am__tar_=false
+ am__untar=false
+ ;;
+ esac
+
+ # If the value was cached, stop now. We just wanted to have am__tar
+ # and am__untar set.
+ test -n "${am_cv_prog_tar_$1}" && break
+
+ # tar/untar a dummy directory, and stop if the command works
+ rm -rf conftest.dir
+ mkdir conftest.dir
+ echo GrepMe > conftest.dir/file
+ AM_RUN_LOG([tardir=conftest.dir && eval $am__tar_ >conftest.tar])
+ rm -rf conftest.dir
+ if test -s conftest.tar; then
+ AM_RUN_LOG([$am__untar <conftest.tar])
+ grep GrepMe conftest.dir/file >/dev/null 2>&1 && break
+ fi
+done
+rm -rf conftest.dir
+
+AC_CACHE_VAL([am_cv_prog_tar_$1], [am_cv_prog_tar_$1=$_am_tool])
+AC_MSG_RESULT([$am_cv_prog_tar_$1])])
+AC_SUBST([am__tar])
+AC_SUBST([am__untar])
+]) # _AM_PROG_TAR
+
+m4_include([make/m4/ax_boost_base.m4])
+m4_include([make/m4/ax_boost_lib.m4])
+m4_include([make/m4/ax_check_enable_debug.m4])
+m4_include([make/m4/ax_check_enable_loki.m4])
+m4_include([make/m4/ax_compare_version.m4])
+m4_include([make/m4/ax_freetype_base.m4])
+m4_include([make/m4/ax_path_gsl.m4])
+m4_include([make/m4/ax_prog_cc_mpi.m4])
+m4_include([make/m4/ax_prog_cxx_mpi.m4])
+m4_include([make/m4/ax_prog_python_version.m4])
+m4_include([make/m4/ax_python_module.m4])
+m4_include([make/m4/ax_soci_core.m4])
+m4_include([make/m4/ax_soci_sqlite.m4])
+m4_include([make/m4/libtool.m4])
+m4_include([make/m4/ltoptions.m4])
+m4_include([make/m4/ltsugar.m4])
+m4_include([make/m4/ltversion.m4])
+m4_include([make/m4/lt~obsolete.m4])
+m4_include([make/m4/rl_configure.m4])
diff --git a/config.guess b/config.guess
new file mode 100755
index 0000000..dc84c68
--- /dev/null
+++ b/config.guess
@@ -0,0 +1,1501 @@
+#! /bin/sh
+# Attempt to guess a canonical system name.
+# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999,
+# 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009
+# Free Software Foundation, Inc.
+
+timestamp='2009-11-20'
+
+# This file is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin Street - Fifth Floor, Boston, MA
+# 02110-1301, USA.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+
+# Originally written by Per Bothner. Please send patches (context
+# diff format) to <config-patches at gnu.org> and include a ChangeLog
+# entry.
+#
+# This script attempts to guess a canonical system name similar to
+# config.sub. If it succeeds, it prints the system name on stdout, and
+# exits with 0. Otherwise, it exits with 1.
+#
+# You can get the latest version of this script from:
+# http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD
+
+me=`echo "$0" | sed -e 's,.*/,,'`
+
+usage="\
+Usage: $0 [OPTION]
+
+Output the configuration name of the system \`$me' is run on.
+
+Operation modes:
+ -h, --help print this help, then exit
+ -t, --time-stamp print date of last modification, then exit
+ -v, --version print version number, then exit
+
+Report bugs and patches to <config-patches at gnu.org>."
+
+version="\
+GNU config.guess ($timestamp)
+
+Originally written by Per Bothner.
+Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001,
+2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions. There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+ case $1 in
+ --time-stamp | --time* | -t )
+ echo "$timestamp" ; exit ;;
+ --version | -v )
+ echo "$version" ; exit ;;
+ --help | --h* | -h )
+ echo "$usage"; exit ;;
+ -- ) # Stop option processing
+ shift; break ;;
+ - ) # Use stdin as input.
+ break ;;
+ -* )
+ echo "$me: invalid option $1$help" >&2
+ exit 1 ;;
+ * )
+ break ;;
+ esac
+done
+
+if test $# != 0; then
+ echo "$me: too many arguments$help" >&2
+ exit 1
+fi
+
+trap 'exit 1' 1 2 15
+
+# CC_FOR_BUILD -- compiler used by this script. Note that the use of a
+# compiler to aid in system detection is discouraged as it requires
+# temporary files to be created and, as you can see below, it is a
+# headache to deal with in a portable fashion.
+
+# Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still
+# use `HOST_CC' if defined, but it is deprecated.
+
+# Portable tmp directory creation inspired by the Autoconf team.
+
+set_cc_for_build='
+trap "exitcode=\$?; (rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null) && exit \$exitcode" 0 ;
+trap "rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null; exit 1" 1 2 13 15 ;
+: ${TMPDIR=/tmp} ;
+ { tmp=`(umask 077 && mktemp -d "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } ||
+ { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir $tmp) ; } ||
+ { tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir $tmp) && echo "Warning: creating insecure temp directory" >&2 ; } ||
+ { echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; } ;
+dummy=$tmp/dummy ;
+tmpfiles="$dummy.c $dummy.o $dummy.rel $dummy" ;
+case $CC_FOR_BUILD,$HOST_CC,$CC in
+ ,,) echo "int x;" > $dummy.c ;
+ for c in cc gcc c89 c99 ; do
+ if ($c -c -o $dummy.o $dummy.c) >/dev/null 2>&1 ; then
+ CC_FOR_BUILD="$c"; break ;
+ fi ;
+ done ;
+ if test x"$CC_FOR_BUILD" = x ; then
+ CC_FOR_BUILD=no_compiler_found ;
+ fi
+ ;;
+ ,,*) CC_FOR_BUILD=$CC ;;
+ ,*,*) CC_FOR_BUILD=$HOST_CC ;;
+esac ; set_cc_for_build= ;'
+
+# This is needed to find uname on a Pyramid OSx when run in the BSD universe.
+# (ghazi at noc.rutgers.edu 1994-08-24)
+if (test -f /.attbin/uname) >/dev/null 2>&1 ; then
+ PATH=$PATH:/.attbin ; export PATH
+fi
+
+UNAME_MACHINE=`(uname -m) 2>/dev/null` || UNAME_MACHINE=unknown
+UNAME_RELEASE=`(uname -r) 2>/dev/null` || UNAME_RELEASE=unknown
+UNAME_SYSTEM=`(uname -s) 2>/dev/null` || UNAME_SYSTEM=unknown
+UNAME_VERSION=`(uname -v) 2>/dev/null` || UNAME_VERSION=unknown
+
+# Note: order is significant - the case branches are not exclusive.
+
+case "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" in
+ *:NetBSD:*:*)
+ # NetBSD (nbsd) targets should (where applicable) match one or
+ # more of the tupples: *-*-netbsdelf*, *-*-netbsdaout*,
+ # *-*-netbsdecoff* and *-*-netbsd*. For targets that recently
+ # switched to ELF, *-*-netbsd* would select the old
+ # object file format. This provides both forward
+ # compatibility and a consistent mechanism for selecting the
+ # object file format.
+ #
+ # Note: NetBSD doesn't particularly care about the vendor
+ # portion of the name. We always set it to "unknown".
+ sysctl="sysctl -n hw.machine_arch"
+ UNAME_MACHINE_ARCH=`(/sbin/$sysctl 2>/dev/null || \
+ /usr/sbin/$sysctl 2>/dev/null || echo unknown)`
+ case "${UNAME_MACHINE_ARCH}" in
+ armeb) machine=armeb-unknown ;;
+ arm*) machine=arm-unknown ;;
+ sh3el) machine=shl-unknown ;;
+ sh3eb) machine=sh-unknown ;;
+ sh5el) machine=sh5le-unknown ;;
+ *) machine=${UNAME_MACHINE_ARCH}-unknown ;;
+ esac
+ # The Operating System including object format, if it has switched
+ # to ELF recently, or will in the future.
+ case "${UNAME_MACHINE_ARCH}" in
+ arm*|i386|m68k|ns32k|sh3*|sparc|vax)
+ eval $set_cc_for_build
+ if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \
+ | grep -q __ELF__
+ then
+ # Once all utilities can be ECOFF (netbsdecoff) or a.out (netbsdaout).
+ # Return netbsd for either. FIX?
+ os=netbsd
+ else
+ os=netbsdelf
+ fi
+ ;;
+ *)
+ os=netbsd
+ ;;
+ esac
+ # The OS release
+ # Debian GNU/NetBSD machines have a different userland, and
+ # thus, need a distinct triplet. However, they do not need
+ # kernel version information, so it can be replaced with a
+ # suitable tag, in the style of linux-gnu.
+ case "${UNAME_VERSION}" in
+ Debian*)
+ release='-gnu'
+ ;;
+ *)
+ release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
+ ;;
+ esac
+ # Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM:
+ # contains redundant information, the shorter form:
+ # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used.
+ echo "${machine}-${os}${release}"
+ exit ;;
+ *:OpenBSD:*:*)
+ UNAME_MACHINE_ARCH=`arch | sed 's/OpenBSD.//'`
+ echo ${UNAME_MACHINE_ARCH}-unknown-openbsd${UNAME_RELEASE}
+ exit ;;
+ *:ekkoBSD:*:*)
+ echo ${UNAME_MACHINE}-unknown-ekkobsd${UNAME_RELEASE}
+ exit ;;
+ *:SolidBSD:*:*)
+ echo ${UNAME_MACHINE}-unknown-solidbsd${UNAME_RELEASE}
+ exit ;;
+ macppc:MirBSD:*:*)
+ echo powerpc-unknown-mirbsd${UNAME_RELEASE}
+ exit ;;
+ *:MirBSD:*:*)
+ echo ${UNAME_MACHINE}-unknown-mirbsd${UNAME_RELEASE}
+ exit ;;
+ alpha:OSF1:*:*)
+ case $UNAME_RELEASE in
+ *4.0)
+ UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'`
+ ;;
+ *5.*)
+ UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'`
+ ;;
+ esac
+ # According to Compaq, /usr/sbin/psrinfo has been available on
+ # OSF/1 and Tru64 systems produced since 1995. I hope that
+ # covers most systems running today. This code pipes the CPU
+ # types through head -n 1, so we only detect the type of CPU 0.
+ ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^ The alpha \(.*\) processor.*$/\1/p' | head -n 1`
+ case "$ALPHA_CPU_TYPE" in
+ "EV4 (21064)")
+ UNAME_MACHINE="alpha" ;;
+ "EV4.5 (21064)")
+ UNAME_MACHINE="alpha" ;;
+ "LCA4 (21066/21068)")
+ UNAME_MACHINE="alpha" ;;
+ "EV5 (21164)")
+ UNAME_MACHINE="alphaev5" ;;
+ "EV5.6 (21164A)")
+ UNAME_MACHINE="alphaev56" ;;
+ "EV5.6 (21164PC)")
+ UNAME_MACHINE="alphapca56" ;;
+ "EV5.7 (21164PC)")
+ UNAME_MACHINE="alphapca57" ;;
+ "EV6 (21264)")
+ UNAME_MACHINE="alphaev6" ;;
+ "EV6.7 (21264A)")
+ UNAME_MACHINE="alphaev67" ;;
+ "EV6.8CB (21264C)")
+ UNAME_MACHINE="alphaev68" ;;
+ "EV6.8AL (21264B)")
+ UNAME_MACHINE="alphaev68" ;;
+ "EV6.8CX (21264D)")
+ UNAME_MACHINE="alphaev68" ;;
+ "EV6.9A (21264/EV69A)")
+ UNAME_MACHINE="alphaev69" ;;
+ "EV7 (21364)")
+ UNAME_MACHINE="alphaev7" ;;
+ "EV7.9 (21364A)")
+ UNAME_MACHINE="alphaev79" ;;
+ esac
+ # A Pn.n version is a patched version.
+ # A Vn.n version is a released version.
+ # A Tn.n version is a released field test version.
+ # A Xn.n version is an unreleased experimental baselevel.
+ # 1.2 uses "1.2" for uname -r.
+ echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
+ exit ;;
+ Alpha\ *:Windows_NT*:*)
+ # How do we know it's Interix rather than the generic POSIX subsystem?
+ # Should we change UNAME_MACHINE based on the output of uname instead
+ # of the specific Alpha model?
+ echo alpha-pc-interix
+ exit ;;
+ 21064:Windows_NT:50:3)
+ echo alpha-dec-winnt3.5
+ exit ;;
+ Amiga*:UNIX_System_V:4.0:*)
+ echo m68k-unknown-sysv4
+ exit ;;
+ *:[Aa]miga[Oo][Ss]:*:*)
+ echo ${UNAME_MACHINE}-unknown-amigaos
+ exit ;;
+ *:[Mm]orph[Oo][Ss]:*:*)
+ echo ${UNAME_MACHINE}-unknown-morphos
+ exit ;;
+ *:OS/390:*:*)
+ echo i370-ibm-openedition
+ exit ;;
+ *:z/VM:*:*)
+ echo s390-ibm-zvmoe
+ exit ;;
+ *:OS400:*:*)
+ echo powerpc-ibm-os400
+ exit ;;
+ arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*)
+ echo arm-acorn-riscix${UNAME_RELEASE}
+ exit ;;
+ arm:riscos:*:*|arm:RISCOS:*:*)
+ echo arm-unknown-riscos
+ exit ;;
+ SR2?01:HI-UX/MPP:*:* | SR8000:HI-UX/MPP:*:*)
+ echo hppa1.1-hitachi-hiuxmpp
+ exit ;;
+ Pyramid*:OSx*:*:* | MIS*:OSx*:*:* | MIS*:SMP_DC-OSx*:*:*)
+ # akee at wpdis03.wpafb.af.mil (Earle F. Ake) contributed MIS and NILE.
+ if test "`(/bin/universe) 2>/dev/null`" = att ; then
+ echo pyramid-pyramid-sysv3
+ else
+ echo pyramid-pyramid-bsd
+ fi
+ exit ;;
+ NILE*:*:*:dcosx)
+ echo pyramid-pyramid-svr4
+ exit ;;
+ DRS?6000:unix:4.0:6*)
+ echo sparc-icl-nx6
+ exit ;;
+ DRS?6000:UNIX_SV:4.2*:7* | DRS?6000:isis:4.2*:7*)
+ case `/usr/bin/uname -p` in
+ sparc) echo sparc-icl-nx7; exit ;;
+ esac ;;
+ s390x:SunOS:*:*)
+ echo ${UNAME_MACHINE}-ibm-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit ;;
+ sun4H:SunOS:5.*:*)
+ echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit ;;
+ sun4*:SunOS:5.*:* | tadpole*:SunOS:5.*:*)
+ echo sparc-sun-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit ;;
+ i86pc:AuroraUX:5.*:* | i86xen:AuroraUX:5.*:*)
+ echo i386-pc-auroraux${UNAME_RELEASE}
+ exit ;;
+ i86pc:SunOS:5.*:* | i86xen:SunOS:5.*:*)
+ eval $set_cc_for_build
+ SUN_ARCH="i386"
+ # If there is a compiler, see if it is configured for 64-bit objects.
+ # Note that the Sun cc does not turn __LP64__ into 1 like gcc does.
+ # This test works for both compilers.
+ if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then
+ if (echo '#ifdef __amd64'; echo IS_64BIT_ARCH; echo '#endif') | \
+ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \
+ grep IS_64BIT_ARCH >/dev/null
+ then
+ SUN_ARCH="x86_64"
+ fi
+ fi
+ echo ${SUN_ARCH}-pc-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit ;;
+ sun4*:SunOS:6*:*)
+ # According to config.sub, this is the proper way to canonicalize
+ # SunOS6. Hard to guess exactly what SunOS6 will be like, but
+ # it's likely to be more like Solaris than SunOS4.
+ echo sparc-sun-solaris3`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit ;;
+ sun4*:SunOS:*:*)
+ case "`/usr/bin/arch -k`" in
+ Series*|S4*)
+ UNAME_RELEASE=`uname -v`
+ ;;
+ esac
+ # Japanese Language versions have a version number like `4.1.3-JL'.
+ echo sparc-sun-sunos`echo ${UNAME_RELEASE}|sed -e 's/-/_/'`
+ exit ;;
+ sun3*:SunOS:*:*)
+ echo m68k-sun-sunos${UNAME_RELEASE}
+ exit ;;
+ sun*:*:4.2BSD:*)
+ UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
+ test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3
+ case "`/bin/arch`" in
+ sun3)
+ echo m68k-sun-sunos${UNAME_RELEASE}
+ ;;
+ sun4)
+ echo sparc-sun-sunos${UNAME_RELEASE}
+ ;;
+ esac
+ exit ;;
+ aushp:SunOS:*:*)
+ echo sparc-auspex-sunos${UNAME_RELEASE}
+ exit ;;
+ # The situation for MiNT is a little confusing. The machine name
+ # can be virtually everything (everything which is not
+ # "atarist" or "atariste" at least should have a processor
+ # > m68000). The system name ranges from "MiNT" over "FreeMiNT"
+ # to the lowercase version "mint" (or "freemint"). Finally
+ # the system name "TOS" denotes a system which is actually not
+ # MiNT. But MiNT is downward compatible to TOS, so this should
+ # be no problem.
+ atarist[e]:*MiNT:*:* | atarist[e]:*mint:*:* | atarist[e]:*TOS:*:*)
+ echo m68k-atari-mint${UNAME_RELEASE}
+ exit ;;
+ atari*:*MiNT:*:* | atari*:*mint:*:* | atarist[e]:*TOS:*:*)
+ echo m68k-atari-mint${UNAME_RELEASE}
+ exit ;;
+ *falcon*:*MiNT:*:* | *falcon*:*mint:*:* | *falcon*:*TOS:*:*)
+ echo m68k-atari-mint${UNAME_RELEASE}
+ exit ;;
+ milan*:*MiNT:*:* | milan*:*mint:*:* | *milan*:*TOS:*:*)
+ echo m68k-milan-mint${UNAME_RELEASE}
+ exit ;;
+ hades*:*MiNT:*:* | hades*:*mint:*:* | *hades*:*TOS:*:*)
+ echo m68k-hades-mint${UNAME_RELEASE}
+ exit ;;
+ *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*)
+ echo m68k-unknown-mint${UNAME_RELEASE}
+ exit ;;
+ m68k:machten:*:*)
+ echo m68k-apple-machten${UNAME_RELEASE}
+ exit ;;
+ powerpc:machten:*:*)
+ echo powerpc-apple-machten${UNAME_RELEASE}
+ exit ;;
+ RISC*:Mach:*:*)
+ echo mips-dec-mach_bsd4.3
+ exit ;;
+ RISC*:ULTRIX:*:*)
+ echo mips-dec-ultrix${UNAME_RELEASE}
+ exit ;;
+ VAX*:ULTRIX*:*:*)
+ echo vax-dec-ultrix${UNAME_RELEASE}
+ exit ;;
+ 2020:CLIX:*:* | 2430:CLIX:*:*)
+ echo clipper-intergraph-clix${UNAME_RELEASE}
+ exit ;;
+ mips:*:*:UMIPS | mips:*:*:RISCos)
+ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+#ifdef __cplusplus
+#include <stdio.h> /* for printf() prototype */
+ int main (int argc, char *argv[]) {
+#else
+ int main (argc, argv) int argc; char *argv[]; {
+#endif
+ #if defined (host_mips) && defined (MIPSEB)
+ #if defined (SYSTYPE_SYSV)
+ printf ("mips-mips-riscos%ssysv\n", argv[1]); exit (0);
+ #endif
+ #if defined (SYSTYPE_SVR4)
+ printf ("mips-mips-riscos%ssvr4\n", argv[1]); exit (0);
+ #endif
+ #if defined (SYSTYPE_BSD43) || defined(SYSTYPE_BSD)
+ printf ("mips-mips-riscos%sbsd\n", argv[1]); exit (0);
+ #endif
+ #endif
+ exit (-1);
+ }
+EOF
+ $CC_FOR_BUILD -o $dummy $dummy.c &&
+ dummyarg=`echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` &&
+ SYSTEM_NAME=`$dummy $dummyarg` &&
+ { echo "$SYSTEM_NAME"; exit; }
+ echo mips-mips-riscos${UNAME_RELEASE}
+ exit ;;
+ Motorola:PowerMAX_OS:*:*)
+ echo powerpc-motorola-powermax
+ exit ;;
+ Motorola:*:4.3:PL8-*)
+ echo powerpc-harris-powermax
+ exit ;;
+ Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*)
+ echo powerpc-harris-powermax
+ exit ;;
+ Night_Hawk:Power_UNIX:*:*)
+ echo powerpc-harris-powerunix
+ exit ;;
+ m88k:CX/UX:7*:*)
+ echo m88k-harris-cxux7
+ exit ;;
+ m88k:*:4*:R4*)
+ echo m88k-motorola-sysv4
+ exit ;;
+ m88k:*:3*:R3*)
+ echo m88k-motorola-sysv3
+ exit ;;
+ AViiON:dgux:*:*)
+ # DG/UX returns AViiON for all architectures
+ UNAME_PROCESSOR=`/usr/bin/uname -p`
+ if [ $UNAME_PROCESSOR = mc88100 ] || [ $UNAME_PROCESSOR = mc88110 ]
+ then
+ if [ ${TARGET_BINARY_INTERFACE}x = m88kdguxelfx ] || \
+ [ ${TARGET_BINARY_INTERFACE}x = x ]
+ then
+ echo m88k-dg-dgux${UNAME_RELEASE}
+ else
+ echo m88k-dg-dguxbcs${UNAME_RELEASE}
+ fi
+ else
+ echo i586-dg-dgux${UNAME_RELEASE}
+ fi
+ exit ;;
+ M88*:DolphinOS:*:*) # DolphinOS (SVR3)
+ echo m88k-dolphin-sysv3
+ exit ;;
+ M88*:*:R3*:*)
+ # Delta 88k system running SVR3
+ echo m88k-motorola-sysv3
+ exit ;;
+ XD88*:*:*:*) # Tektronix XD88 system running UTekV (SVR3)
+ echo m88k-tektronix-sysv3
+ exit ;;
+ Tek43[0-9][0-9]:UTek:*:*) # Tektronix 4300 system running UTek (BSD)
+ echo m68k-tektronix-bsd
+ exit ;;
+ *:IRIX*:*:*)
+ echo mips-sgi-irix`echo ${UNAME_RELEASE}|sed -e 's/-/_/g'`
+ exit ;;
+ ????????:AIX?:[12].1:2) # AIX 2.2.1 or AIX 2.1.1 is RT/PC AIX.
+ echo romp-ibm-aix # uname -m gives an 8 hex-code CPU id
+ exit ;; # Note that: echo "'`uname -s`'" gives 'AIX '
+ i*86:AIX:*:*)
+ echo i386-ibm-aix
+ exit ;;
+ ia64:AIX:*:*)
+ if [ -x /usr/bin/oslevel ] ; then
+ IBM_REV=`/usr/bin/oslevel`
+ else
+ IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE}
+ fi
+ echo ${UNAME_MACHINE}-ibm-aix${IBM_REV}
+ exit ;;
+ *:AIX:2:3)
+ if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then
+ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+ #include <sys/systemcfg.h>
+
+ main()
+ {
+ if (!__power_pc())
+ exit(1);
+ puts("powerpc-ibm-aix3.2.5");
+ exit(0);
+ }
+EOF
+ if $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy`
+ then
+ echo "$SYSTEM_NAME"
+ else
+ echo rs6000-ibm-aix3.2.5
+ fi
+ elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then
+ echo rs6000-ibm-aix3.2.4
+ else
+ echo rs6000-ibm-aix3.2
+ fi
+ exit ;;
+ *:AIX:*:[456])
+ IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'`
+ if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then
+ IBM_ARCH=rs6000
+ else
+ IBM_ARCH=powerpc
+ fi
+ if [ -x /usr/bin/oslevel ] ; then
+ IBM_REV=`/usr/bin/oslevel`
+ else
+ IBM_REV=${UNAME_VERSION}.${UNAME_RELEASE}
+ fi
+ echo ${IBM_ARCH}-ibm-aix${IBM_REV}
+ exit ;;
+ *:AIX:*:*)
+ echo rs6000-ibm-aix
+ exit ;;
+ ibmrt:4.4BSD:*|romp-ibm:BSD:*)
+ echo romp-ibm-bsd4.4
+ exit ;;
+ ibmrt:*BSD:*|romp-ibm:BSD:*) # covers RT/PC BSD and
+ echo romp-ibm-bsd${UNAME_RELEASE} # 4.3 with uname added to
+ exit ;; # report: romp-ibm BSD 4.3
+ *:BOSX:*:*)
+ echo rs6000-bull-bosx
+ exit ;;
+ DPX/2?00:B.O.S.:*:*)
+ echo m68k-bull-sysv3
+ exit ;;
+ 9000/[34]??:4.3bsd:1.*:*)
+ echo m68k-hp-bsd
+ exit ;;
+ hp300:4.4BSD:*:* | 9000/[34]??:4.3bsd:2.*:*)
+ echo m68k-hp-bsd4.4
+ exit ;;
+ 9000/[34678]??:HP-UX:*:*)
+ HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
+ case "${UNAME_MACHINE}" in
+ 9000/31? ) HP_ARCH=m68000 ;;
+ 9000/[34]?? ) HP_ARCH=m68k ;;
+ 9000/[678][0-9][0-9])
+ if [ -x /usr/bin/getconf ]; then
+ sc_cpu_version=`/usr/bin/getconf SC_CPU_VERSION 2>/dev/null`
+ sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null`
+ case "${sc_cpu_version}" in
+ 523) HP_ARCH="hppa1.0" ;; # CPU_PA_RISC1_0
+ 528) HP_ARCH="hppa1.1" ;; # CPU_PA_RISC1_1
+ 532) # CPU_PA_RISC2_0
+ case "${sc_kernel_bits}" in
+ 32) HP_ARCH="hppa2.0n" ;;
+ 64) HP_ARCH="hppa2.0w" ;;
+ '') HP_ARCH="hppa2.0" ;; # HP-UX 10.20
+ esac ;;
+ esac
+ fi
+ if [ "${HP_ARCH}" = "" ]; then
+ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+
+ #define _HPUX_SOURCE
+ #include <stdlib.h>
+ #include <unistd.h>
+
+ int main ()
+ {
+ #if defined(_SC_KERNEL_BITS)
+ long bits = sysconf(_SC_KERNEL_BITS);
+ #endif
+ long cpu = sysconf (_SC_CPU_VERSION);
+
+ switch (cpu)
+ {
+ case CPU_PA_RISC1_0: puts ("hppa1.0"); break;
+ case CPU_PA_RISC1_1: puts ("hppa1.1"); break;
+ case CPU_PA_RISC2_0:
+ #if defined(_SC_KERNEL_BITS)
+ switch (bits)
+ {
+ case 64: puts ("hppa2.0w"); break;
+ case 32: puts ("hppa2.0n"); break;
+ default: puts ("hppa2.0"); break;
+ } break;
+ #else /* !defined(_SC_KERNEL_BITS) */
+ puts ("hppa2.0"); break;
+ #endif
+ default: puts ("hppa1.0"); break;
+ }
+ exit (0);
+ }
+EOF
+ (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy`
+ test -z "$HP_ARCH" && HP_ARCH=hppa
+ fi ;;
+ esac
+ if [ ${HP_ARCH} = "hppa2.0w" ]
+ then
+ eval $set_cc_for_build
+
+ # hppa2.0w-hp-hpux* has a 64-bit kernel and a compiler generating
+ # 32-bit code. hppa64-hp-hpux* has the same kernel and a compiler
+ # generating 64-bit code. GNU and HP use different nomenclature:
+ #
+ # $ CC_FOR_BUILD=cc ./config.guess
+ # => hppa2.0w-hp-hpux11.23
+ # $ CC_FOR_BUILD="cc +DA2.0w" ./config.guess
+ # => hppa64-hp-hpux11.23
+
+ if echo __LP64__ | (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) |
+ grep -q __LP64__
+ then
+ HP_ARCH="hppa2.0w"
+ else
+ HP_ARCH="hppa64"
+ fi
+ fi
+ echo ${HP_ARCH}-hp-hpux${HPUX_REV}
+ exit ;;
+ ia64:HP-UX:*:*)
+ HPUX_REV=`echo ${UNAME_RELEASE}|sed -e 's/[^.]*.[0B]*//'`
+ echo ia64-hp-hpux${HPUX_REV}
+ exit ;;
+ 3050*:HI-UX:*:*)
+ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+ #include <unistd.h>
+ int
+ main ()
+ {
+ long cpu = sysconf (_SC_CPU_VERSION);
+ /* The order matters, because CPU_IS_HP_MC68K erroneously returns
+ true for CPU_PA_RISC1_0. CPU_IS_PA_RISC returns correct
+ results, however. */
+ if (CPU_IS_PA_RISC (cpu))
+ {
+ switch (cpu)
+ {
+ case CPU_PA_RISC1_0: puts ("hppa1.0-hitachi-hiuxwe2"); break;
+ case CPU_PA_RISC1_1: puts ("hppa1.1-hitachi-hiuxwe2"); break;
+ case CPU_PA_RISC2_0: puts ("hppa2.0-hitachi-hiuxwe2"); break;
+ default: puts ("hppa-hitachi-hiuxwe2"); break;
+ }
+ }
+ else if (CPU_IS_HP_MC68K (cpu))
+ puts ("m68k-hitachi-hiuxwe2");
+ else puts ("unknown-hitachi-hiuxwe2");
+ exit (0);
+ }
+EOF
+ $CC_FOR_BUILD -o $dummy $dummy.c && SYSTEM_NAME=`$dummy` &&
+ { echo "$SYSTEM_NAME"; exit; }
+ echo unknown-hitachi-hiuxwe2
+ exit ;;
+ 9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:* )
+ echo hppa1.1-hp-bsd
+ exit ;;
+ 9000/8??:4.3bsd:*:*)
+ echo hppa1.0-hp-bsd
+ exit ;;
+ *9??*:MPE/iX:*:* | *3000*:MPE/iX:*:*)
+ echo hppa1.0-hp-mpeix
+ exit ;;
+ hp7??:OSF1:*:* | hp8?[79]:OSF1:*:* )
+ echo hppa1.1-hp-osf
+ exit ;;
+ hp8??:OSF1:*:*)
+ echo hppa1.0-hp-osf
+ exit ;;
+ i*86:OSF1:*:*)
+ if [ -x /usr/sbin/sysversion ] ; then
+ echo ${UNAME_MACHINE}-unknown-osf1mk
+ else
+ echo ${UNAME_MACHINE}-unknown-osf1
+ fi
+ exit ;;
+ parisc*:Lites*:*:*)
+ echo hppa1.1-hp-lites
+ exit ;;
+ C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*)
+ echo c1-convex-bsd
+ exit ;;
+ C2*:ConvexOS:*:* | convex:ConvexOS:C2*:*)
+ if getsysinfo -f scalar_acc
+ then echo c32-convex-bsd
+ else echo c2-convex-bsd
+ fi
+ exit ;;
+ C34*:ConvexOS:*:* | convex:ConvexOS:C34*:*)
+ echo c34-convex-bsd
+ exit ;;
+ C38*:ConvexOS:*:* | convex:ConvexOS:C38*:*)
+ echo c38-convex-bsd
+ exit ;;
+ C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*)
+ echo c4-convex-bsd
+ exit ;;
+ CRAY*Y-MP:*:*:*)
+ echo ymp-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit ;;
+ CRAY*[A-Z]90:*:*:*)
+ echo ${UNAME_MACHINE}-cray-unicos${UNAME_RELEASE} \
+ | sed -e 's/CRAY.*\([A-Z]90\)/\1/' \
+ -e y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/ \
+ -e 's/\.[^.]*$/.X/'
+ exit ;;
+ CRAY*TS:*:*:*)
+ echo t90-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit ;;
+ CRAY*T3E:*:*:*)
+ echo alphaev5-cray-unicosmk${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit ;;
+ CRAY*SV1:*:*:*)
+ echo sv1-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit ;;
+ *:UNICOS/mp:*:*)
+ echo craynv-cray-unicosmp${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit ;;
+ F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*)
+ FUJITSU_PROC=`uname -m | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
+ FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
+ FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'`
+ echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+ exit ;;
+ 5000:UNIX_System_V:4.*:*)
+ FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
+ FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'`
+ echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+ exit ;;
+ i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*)
+ echo ${UNAME_MACHINE}-pc-bsdi${UNAME_RELEASE}
+ exit ;;
+ sparc*:BSD/OS:*:*)
+ echo sparc-unknown-bsdi${UNAME_RELEASE}
+ exit ;;
+ *:BSD/OS:*:*)
+ echo ${UNAME_MACHINE}-unknown-bsdi${UNAME_RELEASE}
+ exit ;;
+ *:FreeBSD:*:*)
+ case ${UNAME_MACHINE} in
+ pc98)
+ echo i386-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
+ amd64)
+ echo x86_64-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
+ *)
+ echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'` ;;
+ esac
+ exit ;;
+ i*:CYGWIN*:*)
+ echo ${UNAME_MACHINE}-pc-cygwin
+ exit ;;
+ *:MINGW*:*)
+ echo ${UNAME_MACHINE}-pc-mingw32
+ exit ;;
+ i*:windows32*:*)
+ # uname -m includes "-pc" on this system.
+ echo ${UNAME_MACHINE}-mingw32
+ exit ;;
+ i*:PW*:*)
+ echo ${UNAME_MACHINE}-pc-pw32
+ exit ;;
+ *:Interix*:*)
+ case ${UNAME_MACHINE} in
+ x86)
+ echo i586-pc-interix${UNAME_RELEASE}
+ exit ;;
+ authenticamd | genuineintel | EM64T)
+ echo x86_64-unknown-interix${UNAME_RELEASE}
+ exit ;;
+ IA64)
+ echo ia64-unknown-interix${UNAME_RELEASE}
+ exit ;;
+ esac ;;
+ [345]86:Windows_95:* | [345]86:Windows_98:* | [345]86:Windows_NT:*)
+ echo i${UNAME_MACHINE}-pc-mks
+ exit ;;
+ 8664:Windows_NT:*)
+ echo x86_64-pc-mks
+ exit ;;
+ i*:Windows_NT*:* | Pentium*:Windows_NT*:*)
+ # How do we know it's Interix rather than the generic POSIX subsystem?
+ # It also conflicts with pre-2.0 versions of AT&T UWIN. Should we
+ # UNAME_MACHINE based on the output of uname instead of i386?
+ echo i586-pc-interix
+ exit ;;
+ i*:UWIN*:*)
+ echo ${UNAME_MACHINE}-pc-uwin
+ exit ;;
+ amd64:CYGWIN*:*:* | x86_64:CYGWIN*:*:*)
+ echo x86_64-unknown-cygwin
+ exit ;;
+ p*:CYGWIN*:*)
+ echo powerpcle-unknown-cygwin
+ exit ;;
+ prep*:SunOS:5.*:*)
+ echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit ;;
+ *:GNU:*:*)
+ # the GNU system
+ echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'`
+ exit ;;
+ *:GNU/*:*:*)
+ # other systems with GNU libc and userland
+ echo ${UNAME_MACHINE}-unknown-`echo ${UNAME_SYSTEM} | sed 's,^[^/]*/,,' | tr '[A-Z]' '[a-z]'``echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`-gnu
+ exit ;;
+ i*86:Minix:*:*)
+ echo ${UNAME_MACHINE}-pc-minix
+ exit ;;
+ alpha:Linux:*:*)
+ case `sed -n '/^cpu model/s/^.*: \(.*\)/\1/p' < /proc/cpuinfo` in
+ EV5) UNAME_MACHINE=alphaev5 ;;
+ EV56) UNAME_MACHINE=alphaev56 ;;
+ PCA56) UNAME_MACHINE=alphapca56 ;;
+ PCA57) UNAME_MACHINE=alphapca56 ;;
+ EV6) UNAME_MACHINE=alphaev6 ;;
+ EV67) UNAME_MACHINE=alphaev67 ;;
+ EV68*) UNAME_MACHINE=alphaev68 ;;
+ esac
+ objdump --private-headers /bin/sh | grep -q ld.so.1
+ if test "$?" = 0 ; then LIBC="libc1" ; else LIBC="" ; fi
+ echo ${UNAME_MACHINE}-unknown-linux-gnu${LIBC}
+ exit ;;
+ arm*:Linux:*:*)
+ eval $set_cc_for_build
+ if echo __ARM_EABI__ | $CC_FOR_BUILD -E - 2>/dev/null \
+ | grep -q __ARM_EABI__
+ then
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ else
+ echo ${UNAME_MACHINE}-unknown-linux-gnueabi
+ fi
+ exit ;;
+ avr32*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ cris:Linux:*:*)
+ echo cris-axis-linux-gnu
+ exit ;;
+ crisv32:Linux:*:*)
+ echo crisv32-axis-linux-gnu
+ exit ;;
+ frv:Linux:*:*)
+ echo frv-unknown-linux-gnu
+ exit ;;
+ i*86:Linux:*:*)
+ LIBC=gnu
+ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+ #ifdef __dietlibc__
+ LIBC=dietlibc
+ #endif
+EOF
+ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^LIBC'`
+ echo "${UNAME_MACHINE}-pc-linux-${LIBC}"
+ exit ;;
+ ia64:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ m32r*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ m68*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ mips:Linux:*:* | mips64:Linux:*:*)
+ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+ #undef CPU
+ #undef ${UNAME_MACHINE}
+ #undef ${UNAME_MACHINE}el
+ #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL)
+ CPU=${UNAME_MACHINE}el
+ #else
+ #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB)
+ CPU=${UNAME_MACHINE}
+ #else
+ CPU=
+ #endif
+ #endif
+EOF
+ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep '^CPU'`
+ test x"${CPU}" != x && { echo "${CPU}-unknown-linux-gnu"; exit; }
+ ;;
+ or32:Linux:*:*)
+ echo or32-unknown-linux-gnu
+ exit ;;
+ padre:Linux:*:*)
+ echo sparc-unknown-linux-gnu
+ exit ;;
+ parisc64:Linux:*:* | hppa64:Linux:*:*)
+ echo hppa64-unknown-linux-gnu
+ exit ;;
+ parisc:Linux:*:* | hppa:Linux:*:*)
+ # Look for CPU level
+ case `grep '^cpu[^a-z]*:' /proc/cpuinfo 2>/dev/null | cut -d' ' -f2` in
+ PA7*) echo hppa1.1-unknown-linux-gnu ;;
+ PA8*) echo hppa2.0-unknown-linux-gnu ;;
+ *) echo hppa-unknown-linux-gnu ;;
+ esac
+ exit ;;
+ ppc64:Linux:*:*)
+ echo powerpc64-unknown-linux-gnu
+ exit ;;
+ ppc:Linux:*:*)
+ echo powerpc-unknown-linux-gnu
+ exit ;;
+ s390:Linux:*:* | s390x:Linux:*:*)
+ echo ${UNAME_MACHINE}-ibm-linux
+ exit ;;
+ sh64*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ sh*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ sparc:Linux:*:* | sparc64:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ vax:Linux:*:*)
+ echo ${UNAME_MACHINE}-dec-linux-gnu
+ exit ;;
+ x86_64:Linux:*:*)
+ echo x86_64-unknown-linux-gnu
+ exit ;;
+ xtensa*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit ;;
+ i*86:DYNIX/ptx:4*:*)
+ # ptx 4.0 does uname -s correctly, with DYNIX/ptx in there.
+ # earlier versions are messed up and put the nodename in both
+ # sysname and nodename.
+ echo i386-sequent-sysv4
+ exit ;;
+ i*86:UNIX_SV:4.2MP:2.*)
+ # Unixware is an offshoot of SVR4, but it has its own version
+ # number series starting with 2...
+ # I am not positive that other SVR4 systems won't match this,
+ # I just have to hope. -- rms.
+ # Use sysv4.2uw... so that sysv4* matches it.
+ echo ${UNAME_MACHINE}-pc-sysv4.2uw${UNAME_VERSION}
+ exit ;;
+ i*86:OS/2:*:*)
+ # If we were able to find `uname', then EMX Unix compatibility
+ # is probably installed.
+ echo ${UNAME_MACHINE}-pc-os2-emx
+ exit ;;
+ i*86:XTS-300:*:STOP)
+ echo ${UNAME_MACHINE}-unknown-stop
+ exit ;;
+ i*86:atheos:*:*)
+ echo ${UNAME_MACHINE}-unknown-atheos
+ exit ;;
+ i*86:syllable:*:*)
+ echo ${UNAME_MACHINE}-pc-syllable
+ exit ;;
+ i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.[02]*:*)
+ echo i386-unknown-lynxos${UNAME_RELEASE}
+ exit ;;
+ i*86:*DOS:*:*)
+ echo ${UNAME_MACHINE}-pc-msdosdjgpp
+ exit ;;
+ i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*)
+ UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'`
+ if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
+ echo ${UNAME_MACHINE}-univel-sysv${UNAME_REL}
+ else
+ echo ${UNAME_MACHINE}-pc-sysv${UNAME_REL}
+ fi
+ exit ;;
+ i*86:*:5:[678]*)
+ # UnixWare 7.x, OpenUNIX and OpenServer 6.
+ case `/bin/uname -X | grep "^Machine"` in
+ *486*) UNAME_MACHINE=i486 ;;
+ *Pentium) UNAME_MACHINE=i586 ;;
+ *Pent*|*Celeron) UNAME_MACHINE=i686 ;;
+ esac
+ echo ${UNAME_MACHINE}-unknown-sysv${UNAME_RELEASE}${UNAME_SYSTEM}${UNAME_VERSION}
+ exit ;;
+ i*86:*:3.2:*)
+ if test -f /usr/options/cb.name; then
+ UNAME_REL=`sed -n 's/.*Version //p' </usr/options/cb.name`
+ echo ${UNAME_MACHINE}-pc-isc$UNAME_REL
+ elif /bin/uname -X 2>/dev/null >/dev/null ; then
+ UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')`
+ (/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486
+ (/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \
+ && UNAME_MACHINE=i586
+ (/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \
+ && UNAME_MACHINE=i686
+ (/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \
+ && UNAME_MACHINE=i686
+ echo ${UNAME_MACHINE}-pc-sco$UNAME_REL
+ else
+ echo ${UNAME_MACHINE}-pc-sysv32
+ fi
+ exit ;;
+ pc:*:*:*)
+ # Left here for compatibility:
+ # uname -m prints for DJGPP always 'pc', but it prints nothing about
+ # the processor, so we play safe by assuming i586.
+ # Note: whatever this is, it MUST be the same as what config.sub
+ # prints for the "djgpp" host, or else GDB configury will decide that
+ # this is a cross-build.
+ echo i586-pc-msdosdjgpp
+ exit ;;
+ Intel:Mach:3*:*)
+ echo i386-pc-mach3
+ exit ;;
+ paragon:*:*:*)
+ echo i860-intel-osf1
+ exit ;;
+ i860:*:4.*:*) # i860-SVR4
+ if grep Stardent /usr/include/sys/uadmin.h >/dev/null 2>&1 ; then
+ echo i860-stardent-sysv${UNAME_RELEASE} # Stardent Vistra i860-SVR4
+ else # Add other i860-SVR4 vendors below as they are discovered.
+ echo i860-unknown-sysv${UNAME_RELEASE} # Unknown i860-SVR4
+ fi
+ exit ;;
+ mini*:CTIX:SYS*5:*)
+ # "miniframe"
+ echo m68010-convergent-sysv
+ exit ;;
+ mc68k:UNIX:SYSTEM5:3.51m)
+ echo m68k-convergent-sysv
+ exit ;;
+ M680?0:D-NIX:5.3:*)
+ echo m68k-diab-dnix
+ exit ;;
+ M68*:*:R3V[5678]*:*)
+ test -r /sysV68 && { echo 'm68k-motorola-sysv'; exit; } ;;
+ 3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0 | S7501*:*:4.0:3.0)
+ OS_REL=''
+ test -r /etc/.relid \
+ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid`
+ /bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+ && { echo i486-ncr-sysv4.3${OS_REL}; exit; }
+ /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;;
+ 3[34]??:*:4.0:* | 3[34]??,*:*:4.0:*)
+ /bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+ && { echo i486-ncr-sysv4; exit; } ;;
+ NCR*:*:4.2:* | MPRAS*:*:4.2:*)
+ OS_REL='.3'
+ test -r /etc/.relid \
+ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid`
+ /bin/uname -p 2>/dev/null | grep 86 >/dev/null \
+ && { echo i486-ncr-sysv4.3${OS_REL}; exit; }
+ /bin/uname -p 2>/dev/null | /bin/grep entium >/dev/null \
+ && { echo i586-ncr-sysv4.3${OS_REL}; exit; }
+ /bin/uname -p 2>/dev/null | /bin/grep pteron >/dev/null \
+ && { echo i586-ncr-sysv4.3${OS_REL}; exit; } ;;
+ m68*:LynxOS:2.*:* | m68*:LynxOS:3.0*:*)
+ echo m68k-unknown-lynxos${UNAME_RELEASE}
+ exit ;;
+ mc68030:UNIX_System_V:4.*:*)
+ echo m68k-atari-sysv4
+ exit ;;
+ TSUNAMI:LynxOS:2.*:*)
+ echo sparc-unknown-lynxos${UNAME_RELEASE}
+ exit ;;
+ rs6000:LynxOS:2.*:*)
+ echo rs6000-unknown-lynxos${UNAME_RELEASE}
+ exit ;;
+ PowerPC:LynxOS:2.*:* | PowerPC:LynxOS:3.[01]*:* | PowerPC:LynxOS:4.[02]*:*)
+ echo powerpc-unknown-lynxos${UNAME_RELEASE}
+ exit ;;
+ SM[BE]S:UNIX_SV:*:*)
+ echo mips-dde-sysv${UNAME_RELEASE}
+ exit ;;
+ RM*:ReliantUNIX-*:*:*)
+ echo mips-sni-sysv4
+ exit ;;
+ RM*:SINIX-*:*:*)
+ echo mips-sni-sysv4
+ exit ;;
+ *:SINIX-*:*:*)
+ if uname -p 2>/dev/null >/dev/null ; then
+ UNAME_MACHINE=`(uname -p) 2>/dev/null`
+ echo ${UNAME_MACHINE}-sni-sysv4
+ else
+ echo ns32k-sni-sysv
+ fi
+ exit ;;
+ PENTIUM:*:4.0*:*) # Unisys `ClearPath HMP IX 4000' SVR4/MP effort
+ # says <Richard.M.Bartel at ccMail.Census.GOV>
+ echo i586-unisys-sysv4
+ exit ;;
+ *:UNIX_System_V:4*:FTX*)
+ # From Gerald Hewes <hewes at openmarket.com>.
+ # How about differentiating between stratus architectures? -djm
+ echo hppa1.1-stratus-sysv4
+ exit ;;
+ *:*:*:FTX*)
+ # From seanf at swdc.stratus.com.
+ echo i860-stratus-sysv4
+ exit ;;
+ i*86:VOS:*:*)
+ # From Paul.Green at stratus.com.
+ echo ${UNAME_MACHINE}-stratus-vos
+ exit ;;
+ *:VOS:*:*)
+ # From Paul.Green at stratus.com.
+ echo hppa1.1-stratus-vos
+ exit ;;
+ mc68*:A/UX:*:*)
+ echo m68k-apple-aux${UNAME_RELEASE}
+ exit ;;
+ news*:NEWS-OS:6*:*)
+ echo mips-sony-newsos6
+ exit ;;
+ R[34]000:*System_V*:*:* | R4000:UNIX_SYSV:*:* | R*000:UNIX_SV:*:*)
+ if [ -d /usr/nec ]; then
+ echo mips-nec-sysv${UNAME_RELEASE}
+ else
+ echo mips-unknown-sysv${UNAME_RELEASE}
+ fi
+ exit ;;
+ BeBox:BeOS:*:*) # BeOS running on hardware made by Be, PPC only.
+ echo powerpc-be-beos
+ exit ;;
+ BeMac:BeOS:*:*) # BeOS running on Mac or Mac clone, PPC only.
+ echo powerpc-apple-beos
+ exit ;;
+ BePC:BeOS:*:*) # BeOS running on Intel PC compatible.
+ echo i586-pc-beos
+ exit ;;
+ BePC:Haiku:*:*) # Haiku running on Intel PC compatible.
+ echo i586-pc-haiku
+ exit ;;
+ SX-4:SUPER-UX:*:*)
+ echo sx4-nec-superux${UNAME_RELEASE}
+ exit ;;
+ SX-5:SUPER-UX:*:*)
+ echo sx5-nec-superux${UNAME_RELEASE}
+ exit ;;
+ SX-6:SUPER-UX:*:*)
+ echo sx6-nec-superux${UNAME_RELEASE}
+ exit ;;
+ SX-7:SUPER-UX:*:*)
+ echo sx7-nec-superux${UNAME_RELEASE}
+ exit ;;
+ SX-8:SUPER-UX:*:*)
+ echo sx8-nec-superux${UNAME_RELEASE}
+ exit ;;
+ SX-8R:SUPER-UX:*:*)
+ echo sx8r-nec-superux${UNAME_RELEASE}
+ exit ;;
+ Power*:Rhapsody:*:*)
+ echo powerpc-apple-rhapsody${UNAME_RELEASE}
+ exit ;;
+ *:Rhapsody:*:*)
+ echo ${UNAME_MACHINE}-apple-rhapsody${UNAME_RELEASE}
+ exit ;;
+ *:Darwin:*:*)
+ UNAME_PROCESSOR=`uname -p` || UNAME_PROCESSOR=unknown
+ case $UNAME_PROCESSOR in
+ i386)
+ eval $set_cc_for_build
+ if [ "$CC_FOR_BUILD" != 'no_compiler_found' ]; then
+ if (echo '#ifdef __LP64__'; echo IS_64BIT_ARCH; echo '#endif') | \
+ (CCOPTS= $CC_FOR_BUILD -E - 2>/dev/null) | \
+ grep IS_64BIT_ARCH >/dev/null
+ then
+ UNAME_PROCESSOR="x86_64"
+ fi
+ fi ;;
+ unknown) UNAME_PROCESSOR=powerpc ;;
+ esac
+ echo ${UNAME_PROCESSOR}-apple-darwin${UNAME_RELEASE}
+ exit ;;
+ *:procnto*:*:* | *:QNX:[0123456789]*:*)
+ UNAME_PROCESSOR=`uname -p`
+ if test "$UNAME_PROCESSOR" = "x86"; then
+ UNAME_PROCESSOR=i386
+ UNAME_MACHINE=pc
+ fi
+ echo ${UNAME_PROCESSOR}-${UNAME_MACHINE}-nto-qnx${UNAME_RELEASE}
+ exit ;;
+ *:QNX:*:4*)
+ echo i386-pc-qnx
+ exit ;;
+ NSE-?:NONSTOP_KERNEL:*:*)
+ echo nse-tandem-nsk${UNAME_RELEASE}
+ exit ;;
+ NSR-?:NONSTOP_KERNEL:*:*)
+ echo nsr-tandem-nsk${UNAME_RELEASE}
+ exit ;;
+ *:NonStop-UX:*:*)
+ echo mips-compaq-nonstopux
+ exit ;;
+ BS2000:POSIX*:*:*)
+ echo bs2000-siemens-sysv
+ exit ;;
+ DS/*:UNIX_System_V:*:*)
+ echo ${UNAME_MACHINE}-${UNAME_SYSTEM}-${UNAME_RELEASE}
+ exit ;;
+ *:Plan9:*:*)
+ # "uname -m" is not consistent, so use $cputype instead. 386
+ # is converted to i386 for consistency with other x86
+ # operating systems.
+ if test "$cputype" = "386"; then
+ UNAME_MACHINE=i386
+ else
+ UNAME_MACHINE="$cputype"
+ fi
+ echo ${UNAME_MACHINE}-unknown-plan9
+ exit ;;
+ *:TOPS-10:*:*)
+ echo pdp10-unknown-tops10
+ exit ;;
+ *:TENEX:*:*)
+ echo pdp10-unknown-tenex
+ exit ;;
+ KS10:TOPS-20:*:* | KL10:TOPS-20:*:* | TYPE4:TOPS-20:*:*)
+ echo pdp10-dec-tops20
+ exit ;;
+ XKL-1:TOPS-20:*:* | TYPE5:TOPS-20:*:*)
+ echo pdp10-xkl-tops20
+ exit ;;
+ *:TOPS-20:*:*)
+ echo pdp10-unknown-tops20
+ exit ;;
+ *:ITS:*:*)
+ echo pdp10-unknown-its
+ exit ;;
+ SEI:*:*:SEIUX)
+ echo mips-sei-seiux${UNAME_RELEASE}
+ exit ;;
+ *:DragonFly:*:*)
+ echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
+ exit ;;
+ *:*VMS:*:*)
+ UNAME_MACHINE=`(uname -p) 2>/dev/null`
+ case "${UNAME_MACHINE}" in
+ A*) echo alpha-dec-vms ; exit ;;
+ I*) echo ia64-dec-vms ; exit ;;
+ V*) echo vax-dec-vms ; exit ;;
+ esac ;;
+ *:XENIX:*:SysV)
+ echo i386-pc-xenix
+ exit ;;
+ i*86:skyos:*:*)
+ echo ${UNAME_MACHINE}-pc-skyos`echo ${UNAME_RELEASE}` | sed -e 's/ .*$//'
+ exit ;;
+ i*86:rdos:*:*)
+ echo ${UNAME_MACHINE}-pc-rdos
+ exit ;;
+ i*86:AROS:*:*)
+ echo ${UNAME_MACHINE}-pc-aros
+ exit ;;
+esac
+
+#echo '(No uname command or uname output not recognized.)' 1>&2
+#echo "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" 1>&2
+
+eval $set_cc_for_build
+cat >$dummy.c <<EOF
+#ifdef _SEQUENT_
+# include <sys/types.h>
+# include <sys/utsname.h>
+#endif
+main ()
+{
+#if defined (sony)
+#if defined (MIPSEB)
+ /* BFD wants "bsd" instead of "newsos". Perhaps BFD should be changed,
+ I don't know.... */
+ printf ("mips-sony-bsd\n"); exit (0);
+#else
+#include <sys/param.h>
+ printf ("m68k-sony-newsos%s\n",
+#ifdef NEWSOS4
+ "4"
+#else
+ ""
+#endif
+ ); exit (0);
+#endif
+#endif
+
+#if defined (__arm) && defined (__acorn) && defined (__unix)
+ printf ("arm-acorn-riscix\n"); exit (0);
+#endif
+
+#if defined (hp300) && !defined (hpux)
+ printf ("m68k-hp-bsd\n"); exit (0);
+#endif
+
+#if defined (NeXT)
+#if !defined (__ARCHITECTURE__)
+#define __ARCHITECTURE__ "m68k"
+#endif
+ int version;
+ version=`(hostinfo | sed -n 's/.*NeXT Mach \([0-9]*\).*/\1/p') 2>/dev/null`;
+ if (version < 4)
+ printf ("%s-next-nextstep%d\n", __ARCHITECTURE__, version);
+ else
+ printf ("%s-next-openstep%d\n", __ARCHITECTURE__, version);
+ exit (0);
+#endif
+
+#if defined (MULTIMAX) || defined (n16)
+#if defined (UMAXV)
+ printf ("ns32k-encore-sysv\n"); exit (0);
+#else
+#if defined (CMU)
+ printf ("ns32k-encore-mach\n"); exit (0);
+#else
+ printf ("ns32k-encore-bsd\n"); exit (0);
+#endif
+#endif
+#endif
+
+#if defined (__386BSD__)
+ printf ("i386-pc-bsd\n"); exit (0);
+#endif
+
+#if defined (sequent)
+#if defined (i386)
+ printf ("i386-sequent-dynix\n"); exit (0);
+#endif
+#if defined (ns32000)
+ printf ("ns32k-sequent-dynix\n"); exit (0);
+#endif
+#endif
+
+#if defined (_SEQUENT_)
+ struct utsname un;
+
+ uname(&un);
+
+ if (strncmp(un.version, "V2", 2) == 0) {
+ printf ("i386-sequent-ptx2\n"); exit (0);
+ }
+ if (strncmp(un.version, "V1", 2) == 0) { /* XXX is V1 correct? */
+ printf ("i386-sequent-ptx1\n"); exit (0);
+ }
+ printf ("i386-sequent-ptx\n"); exit (0);
+
+#endif
+
+#if defined (vax)
+# if !defined (ultrix)
+# include <sys/param.h>
+# if defined (BSD)
+# if BSD == 43
+ printf ("vax-dec-bsd4.3\n"); exit (0);
+# else
+# if BSD == 199006
+ printf ("vax-dec-bsd4.3reno\n"); exit (0);
+# else
+ printf ("vax-dec-bsd\n"); exit (0);
+# endif
+# endif
+# else
+ printf ("vax-dec-bsd\n"); exit (0);
+# endif
+# else
+ printf ("vax-dec-ultrix\n"); exit (0);
+# endif
+#endif
+
+#if defined (alliant) && defined (i860)
+ printf ("i860-alliant-bsd\n"); exit (0);
+#endif
+
+ exit (1);
+}
+EOF
+
+$CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null && SYSTEM_NAME=`$dummy` &&
+ { echo "$SYSTEM_NAME"; exit; }
+
+# Apollos put the system type in the environment.
+
+test -d /usr/apollo && { echo ${ISP}-apollo-${SYSTYPE}; exit; }
+
+# Convex versions that predate uname can use getsysinfo(1)
+
+if [ -x /usr/convex/getsysinfo ]
+then
+ case `getsysinfo -f cpu_type` in
+ c1*)
+ echo c1-convex-bsd
+ exit ;;
+ c2*)
+ if getsysinfo -f scalar_acc
+ then echo c32-convex-bsd
+ else echo c2-convex-bsd
+ fi
+ exit ;;
+ c34*)
+ echo c34-convex-bsd
+ exit ;;
+ c38*)
+ echo c38-convex-bsd
+ exit ;;
+ c4*)
+ echo c4-convex-bsd
+ exit ;;
+ esac
+fi
+
+cat >&2 <<EOF
+$0: unable to guess system type
+
+This script, last modified $timestamp, has failed to recognize
+the operating system you are using. It is advised that you
+download the most up to date version of the config scripts from
+
+ http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.guess;hb=HEAD
+and
+ http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD
+
+If the version you run ($0) is already up to date, please
+send the following data and any information you think might be
+pertinent to <config-patches at gnu.org> in order to provide the needed
+information to handle your system.
+
+config.guess timestamp = $timestamp
+
+uname -m = `(uname -m) 2>/dev/null || echo unknown`
+uname -r = `(uname -r) 2>/dev/null || echo unknown`
+uname -s = `(uname -s) 2>/dev/null || echo unknown`
+uname -v = `(uname -v) 2>/dev/null || echo unknown`
+
+/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null`
+/bin/uname -X = `(/bin/uname -X) 2>/dev/null`
+
+hostinfo = `(hostinfo) 2>/dev/null`
+/bin/universe = `(/bin/universe) 2>/dev/null`
+/usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null`
+/bin/arch = `(/bin/arch) 2>/dev/null`
+/usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null`
+/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null`
+
+UNAME_MACHINE = ${UNAME_MACHINE}
+UNAME_RELEASE = ${UNAME_RELEASE}
+UNAME_SYSTEM = ${UNAME_SYSTEM}
+UNAME_VERSION = ${UNAME_VERSION}
+EOF
+
+exit 1
+
+# Local variables:
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/config.h.in b/config.h.in
new file mode 100644
index 0000000..b1db47f
--- /dev/null
+++ b/config.h.in
@@ -0,0 +1,349 @@
+/* config.h.in. Generated from configure.ac by autoheader. */
+
+/* Define to 1 if you have the `alarm' function. */
+#undef HAVE_ALARM
+
+/* Define to 1 if you have the <arpa/inet.h> header file. */
+#undef HAVE_ARPA_INET_H
+
+/* define if the Boost library is available */
+#undef HAVE_BOOST
+
+/* define if the boost::filesystem library is available */
+#undef HAVE_BOOST_FILESYSTEM
+
+/* define if the boost::iostreams library is available */
+#undef HAVE_BOOST_IOSTREAMS
+
+/* define if the boost::program_options library is available */
+#undef HAVE_BOOST_PROGRAM_OPTIONS
+
+/* define if the boost::regex library is available */
+#undef HAVE_BOOST_REGEX
+
+/* define if the boost::serialization library is available */
+#undef HAVE_BOOST_SERIALIZATION
+
+/* define if the boost::system library is available */
+#undef HAVE_BOOST_SYSTEM
+
+/* define if the boost::thread library is available */
+#undef HAVE_BOOST_THREAD
+
+/* Define to 1 if you have the `bzero' function. */
+#undef HAVE_BZERO
+
+/* C MPI Found */
+#undef HAVE_CC_MPI
+
+/* Define to 1 if you have the `clock_gettime' function. */
+#undef HAVE_CLOCK_GETTIME
+
+/* CXX MPI Found */
+#undef HAVE_CXX_MPI
+
+/* Define to 1 if you have the <dlfcn.h> header file. */
+#undef HAVE_DLFCN_H
+
+/* Define to 1 if you don't have `vprintf' but do have `_doprnt.' */
+#undef HAVE_DOPRNT
+
+/* Define to 1 if you have the <fcntl.h> header file. */
+#undef HAVE_FCNTL_H
+
+/* Define to 1 if you have the `fdatasync' function. */
+#undef HAVE_FDATASYNC
+
+/* Define to 1 if you have the <fenv.h> header file. */
+#undef HAVE_FENV_H
+
+/* Define to 1 if you have the <float.h> header file. */
+#undef HAVE_FLOAT_H
+
+/* Define to 1 if you have the `floor' function. */
+#undef HAVE_FLOOR
+
+/* define if the freetype library is available */
+#undef HAVE_FREETYPE
+
+/* Define to 1 if you have the `ftime' function. */
+#undef HAVE_FTIME
+
+/* Define to 1 if you have the `ftruncate' function. */
+#undef HAVE_FTRUNCATE
+
+/* Define to 1 if you have the `getcwd' function. */
+#undef HAVE_GETCWD
+
+/* Define to 1 if you have the `gethrtime' function. */
+#undef HAVE_GETHRTIME
+
+/* Define to 1 if you have the `gettimeofday' function. */
+#undef HAVE_GETTIMEOFDAY
+
+/* GSL Available */
+#undef HAVE_GSL
+
+/* I have inline! */
+#undef HAVE_INLINE
+
+/* Define to 1 if you have the <inttypes.h> header file. */
+#undef HAVE_INTTYPES_H
+
+/* Define to 1 if you have the `dl' library (-ldl). */
+#undef HAVE_LIBDL
+
+/* Define to 1 if you have the `mysqlclient' library (-lmysqlclient). */
+#undef HAVE_LIBMYSQLCLIENT
+
+/* Define to 1 if you have the `pthread' library (-lpthread). */
+#undef HAVE_LIBPTHREAD
+
+/* Define to 1 if you have the `z' library (-lz). */
+#undef HAVE_LIBZ
+
+/* Define to 1 if you have the <limits.h> header file. */
+#undef HAVE_LIMITS_H
+
+/* Define to 1 if you have the `localtime_r' function. */
+#undef HAVE_LOCALTIME_R
+
+/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
+ to 0 otherwise. */
+#undef HAVE_MALLOC
+
+/* Define to 1 if you have the <malloc.h> header file. */
+#undef HAVE_MALLOC_H
+
+/* Define to 1 if you have the `memmove' function. */
+#undef HAVE_MEMMOVE
+
+/* Define to 1 if you have the <memory.h> header file. */
+#undef HAVE_MEMORY_H
+
+/* Define to 1 if you have the `memset' function. */
+#undef HAVE_MEMSET
+
+/* Define to 1 if you have the `mkdir' function. */
+#undef HAVE_MKDIR
+
+/* Define to 1 if you have the <netdb.h> header file. */
+#undef HAVE_NETDB_H
+
+/* Define to 1 if you have the <netinet/in.h> header file. */
+#undef HAVE_NETINET_IN_H
+
+/* Png Library Available */
+#undef HAVE_PNG
+
+/* Define to 1 if you have the `pow' function. */
+#undef HAVE_POW
+
+/* Define to 1 if the system has the type `ptrdiff_t'. */
+#undef HAVE_PTRDIFF_T
+
+/* R Library Available */
+#undef HAVE_R
+
+/* Define to 1 if your system has a GNU libc compatible `realloc' function,
+ and to 0 otherwise. */
+#undef HAVE_REALLOC
+
+/* Define to 1 if you have the `select' function. */
+#undef HAVE_SELECT
+
+/* define if the soci library is available */
+#undef HAVE_SOCI
+
+/* define if the soci SQLite backend is available */
+#undef HAVE_SOCI_SQLITE
+
+/* Define to 1 if you have the `socket' function. */
+#undef HAVE_SOCKET
+
+/* SQLite is available */
+#undef HAVE_SQLITE
+
+/* Define to 1 if you have the `sqrt' function. */
+#undef HAVE_SQRT
+
+/* Define to 1 if `stat' has the bug that it succeeds when given the
+ zero-length file name argument. */
+#undef HAVE_STAT_EMPTY_STRING_BUG
+
+/* Define to 1 if stdbool.h conforms to C99. */
+#undef HAVE_STDBOOL_H
+
+/* Define to 1 if you have the <stddef.h> header file. */
+#undef HAVE_STDDEF_H
+
+/* Define to 1 if you have the <stdint.h> header file. */
+#undef HAVE_STDINT_H
+
+/* Define to 1 if you have the <stdlib.h> header file. */
+#undef HAVE_STDLIB_H
+
+/* Define to 1 if you have the `strchr' function. */
+#undef HAVE_STRCHR
+
+/* Define to 1 if you have the `strerror' function. */
+#undef HAVE_STRERROR
+
+/* Define to 1 if you have the `strftime' function. */
+#undef HAVE_STRFTIME
+
+/* Define to 1 if you have the <strings.h> header file. */
+#undef HAVE_STRINGS_H
+
+/* Define to 1 if you have the <string.h> header file. */
+#undef HAVE_STRING_H
+
+/* Define to 1 if you have the `strrchr' function. */
+#undef HAVE_STRRCHR
+
+/* Define to 1 if you have the <syslog.h> header file. */
+#undef HAVE_SYSLOG_H
+
+/* Define to 1 if you have the <sys/file.h> header file. */
+#undef HAVE_SYS_FILE_H
+
+/* Define to 1 if you have the <sys/ioctl.h> header file. */
+#undef HAVE_SYS_IOCTL_H
+
+/* Define to 1 if you have the <sys/mount.h> header file. */
+#undef HAVE_SYS_MOUNT_H
+
+/* Define to 1 if you have the <sys/param.h> header file. */
+#undef HAVE_SYS_PARAM_H
+
+/* Define to 1 if you have the <sys/select.h> header file. */
+#undef HAVE_SYS_SELECT_H
+
+/* Define to 1 if you have the <sys/socket.h> header file. */
+#undef HAVE_SYS_SOCKET_H
+
+/* Define to 1 if you have the <sys/stat.h> header file. */
+#undef HAVE_SYS_STAT_H
+
+/* Define to 1 if you have the <sys/timeb.h> header file. */
+#undef HAVE_SYS_TIMEB_H
+
+/* Define to 1 if you have the <sys/time.h> header file. */
+#undef HAVE_SYS_TIME_H
+
+/* Define to 1 if you have the <sys/types.h> header file. */
+#undef HAVE_SYS_TYPES_H
+
+/* Define to 1 if you have the <unistd.h> header file. */
+#undef HAVE_UNISTD_H
+
+/* Define to 1 if you have the `vprintf' function. */
+#undef HAVE_VPRINTF
+
+/* Define to 1 if you have the <wchar.h> header file. */
+#undef HAVE_WCHAR_H
+
+/* Define to 1 if the system has the type `_Bool'. */
+#undef HAVE__BOOL
+
+/* Define to 1 if `lstat' dereferences a symlink specified with a trailing
+ slash. */
+#undef LSTAT_FOLLOWS_SLASHED_SYMLINK
+
+/* Define to the sub-directory in which libtool stores uninstalled libraries.
+ */
+#undef LT_OBJDIR
+
+/* No C MPI Found */
+#undef NO_CC_MPI
+
+/* No C MPI Found */
+#undef NO_CXX_MPI
+
+/* No GSL Found */
+#undef NO_GSL
+
+/* No PNG library available */
+#undef NO_PNG
+
+/* No R available */
+#undef NO_R
+
+/* No SQLite library available */
+#undef NO_SQLITE
+
+/* Name of package */
+#undef PACKAGE
+
+/* Define to the address where bug reports for this package should be sent. */
+#undef PACKAGE_BUGREPORT
+
+/* Define to the full name of this package. */
+#undef PACKAGE_NAME
+
+/* Define to the full name and version of this package. */
+#undef PACKAGE_STRING
+
+/* Define to the one symbol short name of this package. */
+#undef PACKAGE_TARNAME
+
+/* Define to the version of this package. */
+#undef PACKAGE_VERSION
+
+/* Define to the type of arg 1 for `select'. */
+#undef SELECT_TYPE_ARG1
+
+/* Define to the type of args 2, 3 and 4 for `select'. */
+#undef SELECT_TYPE_ARG234
+
+/* Define to the type of arg 5 for `select'. */
+#undef SELECT_TYPE_ARG5
+
+/* Define to 1 if you have the ANSI C header files. */
+#undef STDC_HEADERS
+
+/* Define to 1 if you can safely include both <sys/time.h> and <time.h>. */
+#undef TIME_WITH_SYS_TIME
+
+/* Define to 1 if your <sys/time.h> declares `struct tm'. */
+#undef TM_IN_SYS_TIME
+
+/* Version number of package */
+#undef VERSION
+
+/* Define to empty if `const' does not conform to ANSI C. */
+#undef const
+
+/* Define to `int' if <sys/types.h> doesn't define. */
+#undef gid_t
+
+/* Define to `__inline__' or `__inline' if that's what the C compiler
+ calls it, or to nothing if 'inline' is not supported under any name. */
+#ifndef __cplusplus
+#undef inline
+#endif
+
+/* Define to rpl_malloc if the replacement function should be used. */
+#undef malloc
+
+/* Define to `int' if <sys/types.h> does not define. */
+#undef mode_t
+
+/* Define to `long int' if <sys/types.h> does not define. */
+#undef off_t
+
+/* Define to `int' if <sys/types.h> does not define. */
+#undef pid_t
+
+/* Define to rpl_realloc if the replacement function should be used. */
+#undef realloc
+
+/* Define to `unsigned int' if <sys/types.h> does not define. */
+#undef size_t
+
+/* Define to `int' if <sys/types.h> doesn't define. */
+#undef uid_t
+
+/* Define to empty if the keyword `volatile' does not work. Warning: valid
+ code using `volatile' can become incorrect without. Disable with care. */
+#undef volatile
diff --git a/config.sub b/config.sub
new file mode 100755
index 0000000..2a55a50
--- /dev/null
+++ b/config.sub
@@ -0,0 +1,1705 @@
+#! /bin/sh
+# Configuration validation subroutine script.
+# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999,
+# 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009
+# Free Software Foundation, Inc.
+
+timestamp='2009-11-20'
+
+# This file is (in principle) common to ALL GNU software.
+# The presence of a machine in this file suggests that SOME GNU software
+# can handle that machine. It does not imply ALL GNU software can.
+#
+# This file is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin Street - Fifth Floor, Boston, MA
+# 02110-1301, USA.
+#
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+
+# Please send patches to <config-patches at gnu.org>. Submit a context
+# diff and a properly formatted GNU ChangeLog entry.
+#
+# Configuration subroutine to validate and canonicalize a configuration type.
+# Supply the specified configuration type as an argument.
+# If it is invalid, we print an error message on stderr and exit with code 1.
+# Otherwise, we print the canonical config type on stdout and succeed.
+
+# You can get the latest version of this script from:
+# http://git.savannah.gnu.org/gitweb/?p=config.git;a=blob_plain;f=config.sub;hb=HEAD
+
+# This file is supposed to be the same for all GNU packages
+# and recognize all the CPU types, system types and aliases
+# that are meaningful with *any* GNU software.
+# Each package is responsible for reporting which valid configurations
+# it does not support. The user should be able to distinguish
+# a failure to support a valid configuration from a meaningless
+# configuration.
+
+# The goal of this file is to map all the various variations of a given
+# machine specification into a single specification in the form:
+# CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM
+# or in some cases, the newer four-part form:
+# CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM
+# It is wrong to echo any other type of specification.
+
+me=`echo "$0" | sed -e 's,.*/,,'`
+
+usage="\
+Usage: $0 [OPTION] CPU-MFR-OPSYS
+ $0 [OPTION] ALIAS
+
+Canonicalize a configuration name.
+
+Operation modes:
+ -h, --help print this help, then exit
+ -t, --time-stamp print date of last modification, then exit
+ -v, --version print version number, then exit
+
+Report bugs and patches to <config-patches at gnu.org>."
+
+version="\
+GNU config.sub ($timestamp)
+
+Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001,
+2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
+
+This is free software; see the source for copying conditions. There is NO
+warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE."
+
+help="
+Try \`$me --help' for more information."
+
+# Parse command line
+while test $# -gt 0 ; do
+ case $1 in
+ --time-stamp | --time* | -t )
+ echo "$timestamp" ; exit ;;
+ --version | -v )
+ echo "$version" ; exit ;;
+ --help | --h* | -h )
+ echo "$usage"; exit ;;
+ -- ) # Stop option processing
+ shift; break ;;
+ - ) # Use stdin as input.
+ break ;;
+ -* )
+ echo "$me: invalid option $1$help"
+ exit 1 ;;
+
+ *local*)
+ # First pass through any local machine types.
+ echo $1
+ exit ;;
+
+ * )
+ break ;;
+ esac
+done
+
+case $# in
+ 0) echo "$me: missing argument$help" >&2
+ exit 1;;
+ 1) ;;
+ *) echo "$me: too many arguments$help" >&2
+ exit 1;;
+esac
+
+# Separate what the user gave into CPU-COMPANY and OS or KERNEL-OS (if any).
+# Here we must recognize all the valid KERNEL-OS combinations.
+maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
+case $maybe_os in
+ nto-qnx* | linux-gnu* | linux-dietlibc | linux-newlib* | linux-uclibc* | \
+ uclinux-uclibc* | uclinux-gnu* | kfreebsd*-gnu* | knetbsd*-gnu* | netbsd*-gnu* | \
+ kopensolaris*-gnu* | \
+ storm-chaos* | os2-emx* | rtmk-nova*)
+ os=-$maybe_os
+ basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
+ ;;
+ *)
+ basic_machine=`echo $1 | sed 's/-[^-]*$//'`
+ if [ $basic_machine != $1 ]
+ then os=`echo $1 | sed 's/.*-/-/'`
+ else os=; fi
+ ;;
+esac
+
+### Let's recognize common machines as not being operating systems so
+### that things like config.sub decstation-3100 work. We also
+### recognize some manufacturers as not being operating systems, so we
+### can provide default operating systems below.
+case $os in
+ -sun*os*)
+ # Prevent following clause from handling this invalid input.
+ ;;
+ -dec* | -mips* | -sequent* | -encore* | -pc532* | -sgi* | -sony* | \
+ -att* | -7300* | -3300* | -delta* | -motorola* | -sun[234]* | \
+ -unicom* | -ibm* | -next | -hp | -isi* | -apollo | -altos* | \
+ -convergent* | -ncr* | -news | -32* | -3600* | -3100* | -hitachi* |\
+ -c[123]* | -convex* | -sun | -crds | -omron* | -dg | -ultra | -tti* | \
+ -harris | -dolphin | -highlevel | -gould | -cbm | -ns | -masscomp | \
+ -apple | -axis | -knuth | -cray | -microblaze)
+ os=
+ basic_machine=$1
+ ;;
+ -bluegene*)
+ os=-cnk
+ ;;
+ -sim | -cisco | -oki | -wec | -winbond)
+ os=
+ basic_machine=$1
+ ;;
+ -scout)
+ ;;
+ -wrs)
+ os=-vxworks
+ basic_machine=$1
+ ;;
+ -chorusos*)
+ os=-chorusos
+ basic_machine=$1
+ ;;
+ -chorusrdb)
+ os=-chorusrdb
+ basic_machine=$1
+ ;;
+ -hiux*)
+ os=-hiuxwe2
+ ;;
+ -sco6)
+ os=-sco5v6
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -sco5)
+ os=-sco3.2v5
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -sco4)
+ os=-sco3.2v4
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -sco3.2.[4-9]*)
+ os=`echo $os | sed -e 's/sco3.2./sco3.2v/'`
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -sco3.2v[4-9]*)
+ # Don't forget version if it is 3.2v4 or newer.
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -sco5v6*)
+ # Don't forget version if it is 3.2v4 or newer.
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -sco*)
+ os=-sco3.2v2
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -udk*)
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -isc)
+ os=-isc2.2
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -clix*)
+ basic_machine=clipper-intergraph
+ ;;
+ -isc*)
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-pc/'`
+ ;;
+ -lynx*)
+ os=-lynxos
+ ;;
+ -ptx*)
+ basic_machine=`echo $1 | sed -e 's/86-.*/86-sequent/'`
+ ;;
+ -windowsnt*)
+ os=`echo $os | sed -e 's/windowsnt/winnt/'`
+ ;;
+ -psos*)
+ os=-psos
+ ;;
+ -mint | -mint[0-9]*)
+ basic_machine=m68k-atari
+ os=-mint
+ ;;
+esac
+
+# Decode aliases for certain CPU-COMPANY combinations.
+case $basic_machine in
+ # Recognize the basic CPU types without company name.
+ # Some are omitted here because they have special meanings below.
+ 1750a | 580 \
+ | a29k \
+ | alpha | alphaev[4-8] | alphaev56 | alphaev6[78] | alphapca5[67] \
+ | alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] | alpha64pca5[67] \
+ | am33_2.0 \
+ | arc | arm | arm[bl]e | arme[lb] | armv[2345] | armv[345][lb] | avr | avr32 \
+ | bfin \
+ | c4x | clipper \
+ | d10v | d30v | dlx | dsp16xx \
+ | fido | fr30 | frv \
+ | h8300 | h8500 | hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \
+ | i370 | i860 | i960 | ia64 \
+ | ip2k | iq2000 \
+ | lm32 \
+ | m32c | m32r | m32rle | m68000 | m68k | m88k \
+ | maxq | mb | microblaze | mcore | mep | metag \
+ | mips | mipsbe | mipseb | mipsel | mipsle \
+ | mips16 \
+ | mips64 | mips64el \
+ | mips64octeon | mips64octeonel \
+ | mips64orion | mips64orionel \
+ | mips64r5900 | mips64r5900el \
+ | mips64vr | mips64vrel \
+ | mips64vr4100 | mips64vr4100el \
+ | mips64vr4300 | mips64vr4300el \
+ | mips64vr5000 | mips64vr5000el \
+ | mips64vr5900 | mips64vr5900el \
+ | mipsisa32 | mipsisa32el \
+ | mipsisa32r2 | mipsisa32r2el \
+ | mipsisa64 | mipsisa64el \
+ | mipsisa64r2 | mipsisa64r2el \
+ | mipsisa64sb1 | mipsisa64sb1el \
+ | mipsisa64sr71k | mipsisa64sr71kel \
+ | mipstx39 | mipstx39el \
+ | mn10200 | mn10300 \
+ | moxie \
+ | mt \
+ | msp430 \
+ | nios | nios2 \
+ | ns16k | ns32k \
+ | or32 \
+ | pdp10 | pdp11 | pj | pjl \
+ | powerpc | powerpc64 | powerpc64le | powerpcle | ppcbe \
+ | pyramid \
+ | rx \
+ | score \
+ | sh | sh[1234] | sh[24]a | sh[24]aeb | sh[23]e | sh[34]eb | sheb | shbe | shle | sh[1234]le | sh3ele \
+ | sh64 | sh64le \
+ | sparc | sparc64 | sparc64b | sparc64v | sparc86x | sparclet | sparclite \
+ | sparcv8 | sparcv9 | sparcv9b | sparcv9v \
+ | spu | strongarm \
+ | tahoe | thumb | tic4x | tic80 | tron \
+ | ubicom32 \
+ | v850 | v850e \
+ | we32k \
+ | x86 | xc16x | xscale | xscalee[bl] | xstormy16 | xtensa \
+ | z8k | z80)
+ basic_machine=$basic_machine-unknown
+ ;;
+ m6811 | m68hc11 | m6812 | m68hc12 | picochip)
+ # Motorola 68HC11/12.
+ basic_machine=$basic_machine-unknown
+ os=-none
+ ;;
+ m88110 | m680[12346]0 | m683?2 | m68360 | m5200 | v70 | w65 | z8k)
+ ;;
+ ms1)
+ basic_machine=mt-unknown
+ ;;
+
+ # We use `pc' rather than `unknown'
+ # because (1) that's what they normally are, and
+ # (2) the word "unknown" tends to confuse beginning users.
+ i*86 | x86_64)
+ basic_machine=$basic_machine-pc
+ ;;
+ # Object if more than one company name word.
+ *-*-*)
+ echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
+ exit 1
+ ;;
+ # Recognize the basic CPU types with company name.
+ 580-* \
+ | a29k-* \
+ | alpha-* | alphaev[4-8]-* | alphaev56-* | alphaev6[78]-* \
+ | alpha64-* | alpha64ev[4-8]-* | alpha64ev56-* | alpha64ev6[78]-* \
+ | alphapca5[67]-* | alpha64pca5[67]-* | arc-* \
+ | arm-* | armbe-* | armle-* | armeb-* | armv*-* \
+ | avr-* | avr32-* \
+ | bfin-* | bs2000-* \
+ | c[123]* | c30-* | [cjt]90-* | c4x-* | c54x-* | c55x-* | c6x-* \
+ | clipper-* | craynv-* | cydra-* \
+ | d10v-* | d30v-* | dlx-* \
+ | elxsi-* \
+ | f30[01]-* | f700-* | fido-* | fr30-* | frv-* | fx80-* \
+ | h8300-* | h8500-* \
+ | hppa-* | hppa1.[01]-* | hppa2.0-* | hppa2.0[nw]-* | hppa64-* \
+ | i*86-* | i860-* | i960-* | ia64-* \
+ | ip2k-* | iq2000-* \
+ | lm32-* \
+ | m32c-* | m32r-* | m32rle-* \
+ | m68000-* | m680[012346]0-* | m68360-* | m683?2-* | m68k-* \
+ | m88110-* | m88k-* | maxq-* | mcore-* | metag-* | microblaze-* \
+ | mips-* | mipsbe-* | mipseb-* | mipsel-* | mipsle-* \
+ | mips16-* \
+ | mips64-* | mips64el-* \
+ | mips64octeon-* | mips64octeonel-* \
+ | mips64orion-* | mips64orionel-* \
+ | mips64r5900-* | mips64r5900el-* \
+ | mips64vr-* | mips64vrel-* \
+ | mips64vr4100-* | mips64vr4100el-* \
+ | mips64vr4300-* | mips64vr4300el-* \
+ | mips64vr5000-* | mips64vr5000el-* \
+ | mips64vr5900-* | mips64vr5900el-* \
+ | mipsisa32-* | mipsisa32el-* \
+ | mipsisa32r2-* | mipsisa32r2el-* \
+ | mipsisa64-* | mipsisa64el-* \
+ | mipsisa64r2-* | mipsisa64r2el-* \
+ | mipsisa64sb1-* | mipsisa64sb1el-* \
+ | mipsisa64sr71k-* | mipsisa64sr71kel-* \
+ | mipstx39-* | mipstx39el-* \
+ | mmix-* \
+ | mt-* \
+ | msp430-* \
+ | nios-* | nios2-* \
+ | none-* | np1-* | ns16k-* | ns32k-* \
+ | orion-* \
+ | pdp10-* | pdp11-* | pj-* | pjl-* | pn-* | power-* \
+ | powerpc-* | powerpc64-* | powerpc64le-* | powerpcle-* | ppcbe-* \
+ | pyramid-* \
+ | romp-* | rs6000-* | rx-* \
+ | sh-* | sh[1234]-* | sh[24]a-* | sh[24]aeb-* | sh[23]e-* | sh[34]eb-* | sheb-* | shbe-* \
+ | shle-* | sh[1234]le-* | sh3ele-* | sh64-* | sh64le-* \
+ | sparc-* | sparc64-* | sparc64b-* | sparc64v-* | sparc86x-* | sparclet-* \
+ | sparclite-* \
+ | sparcv8-* | sparcv9-* | sparcv9b-* | sparcv9v-* | strongarm-* | sv1-* | sx?-* \
+ | tahoe-* | thumb-* \
+ | tic30-* | tic4x-* | tic54x-* | tic55x-* | tic6x-* | tic80-* | tile-* \
+ | tron-* \
+ | ubicom32-* \
+ | v850-* | v850e-* | vax-* \
+ | we32k-* \
+ | x86-* | x86_64-* | xc16x-* | xps100-* | xscale-* | xscalee[bl]-* \
+ | xstormy16-* | xtensa*-* \
+ | ymp-* \
+ | z8k-* | z80-*)
+ ;;
+ # Recognize the basic CPU types without company name, with glob match.
+ xtensa*)
+ basic_machine=$basic_machine-unknown
+ ;;
+ # Recognize the various machine names and aliases which stand
+ # for a CPU type and a company and sometimes even an OS.
+ 386bsd)
+ basic_machine=i386-unknown
+ os=-bsd
+ ;;
+ 3b1 | 7300 | 7300-att | att-7300 | pc7300 | safari | unixpc)
+ basic_machine=m68000-att
+ ;;
+ 3b*)
+ basic_machine=we32k-att
+ ;;
+ a29khif)
+ basic_machine=a29k-amd
+ os=-udi
+ ;;
+ abacus)
+ basic_machine=abacus-unknown
+ ;;
+ adobe68k)
+ basic_machine=m68010-adobe
+ os=-scout
+ ;;
+ alliant | fx80)
+ basic_machine=fx80-alliant
+ ;;
+ altos | altos3068)
+ basic_machine=m68k-altos
+ ;;
+ am29k)
+ basic_machine=a29k-none
+ os=-bsd
+ ;;
+ amd64)
+ basic_machine=x86_64-pc
+ ;;
+ amd64-*)
+ basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ amdahl)
+ basic_machine=580-amdahl
+ os=-sysv
+ ;;
+ amiga | amiga-*)
+ basic_machine=m68k-unknown
+ ;;
+ amigaos | amigados)
+ basic_machine=m68k-unknown
+ os=-amigaos
+ ;;
+ amigaunix | amix)
+ basic_machine=m68k-unknown
+ os=-sysv4
+ ;;
+ apollo68)
+ basic_machine=m68k-apollo
+ os=-sysv
+ ;;
+ apollo68bsd)
+ basic_machine=m68k-apollo
+ os=-bsd
+ ;;
+ aros)
+ basic_machine=i386-pc
+ os=-aros
+ ;;
+ aux)
+ basic_machine=m68k-apple
+ os=-aux
+ ;;
+ balance)
+ basic_machine=ns32k-sequent
+ os=-dynix
+ ;;
+ blackfin)
+ basic_machine=bfin-unknown
+ os=-linux
+ ;;
+ blackfin-*)
+ basic_machine=bfin-`echo $basic_machine | sed 's/^[^-]*-//'`
+ os=-linux
+ ;;
+ bluegene*)
+ basic_machine=powerpc-ibm
+ os=-cnk
+ ;;
+ c90)
+ basic_machine=c90-cray
+ os=-unicos
+ ;;
+ cegcc)
+ basic_machine=arm-unknown
+ os=-cegcc
+ ;;
+ convex-c1)
+ basic_machine=c1-convex
+ os=-bsd
+ ;;
+ convex-c2)
+ basic_machine=c2-convex
+ os=-bsd
+ ;;
+ convex-c32)
+ basic_machine=c32-convex
+ os=-bsd
+ ;;
+ convex-c34)
+ basic_machine=c34-convex
+ os=-bsd
+ ;;
+ convex-c38)
+ basic_machine=c38-convex
+ os=-bsd
+ ;;
+ cray | j90)
+ basic_machine=j90-cray
+ os=-unicos
+ ;;
+ craynv)
+ basic_machine=craynv-cray
+ os=-unicosmp
+ ;;
+ cr16)
+ basic_machine=cr16-unknown
+ os=-elf
+ ;;
+ crds | unos)
+ basic_machine=m68k-crds
+ ;;
+ crisv32 | crisv32-* | etraxfs*)
+ basic_machine=crisv32-axis
+ ;;
+ cris | cris-* | etrax*)
+ basic_machine=cris-axis
+ ;;
+ crx)
+ basic_machine=crx-unknown
+ os=-elf
+ ;;
+ da30 | da30-*)
+ basic_machine=m68k-da30
+ ;;
+ decstation | decstation-3100 | pmax | pmax-* | pmin | dec3100 | decstatn)
+ basic_machine=mips-dec
+ ;;
+ decsystem10* | dec10*)
+ basic_machine=pdp10-dec
+ os=-tops10
+ ;;
+ decsystem20* | dec20*)
+ basic_machine=pdp10-dec
+ os=-tops20
+ ;;
+ delta | 3300 | motorola-3300 | motorola-delta \
+ | 3300-motorola | delta-motorola)
+ basic_machine=m68k-motorola
+ ;;
+ delta88)
+ basic_machine=m88k-motorola
+ os=-sysv3
+ ;;
+ dicos)
+ basic_machine=i686-pc
+ os=-dicos
+ ;;
+ djgpp)
+ basic_machine=i586-pc
+ os=-msdosdjgpp
+ ;;
+ dpx20 | dpx20-*)
+ basic_machine=rs6000-bull
+ os=-bosx
+ ;;
+ dpx2* | dpx2*-bull)
+ basic_machine=m68k-bull
+ os=-sysv3
+ ;;
+ ebmon29k)
+ basic_machine=a29k-amd
+ os=-ebmon
+ ;;
+ elxsi)
+ basic_machine=elxsi-elxsi
+ os=-bsd
+ ;;
+ encore | umax | mmax)
+ basic_machine=ns32k-encore
+ ;;
+ es1800 | OSE68k | ose68k | ose | OSE)
+ basic_machine=m68k-ericsson
+ os=-ose
+ ;;
+ fx2800)
+ basic_machine=i860-alliant
+ ;;
+ genix)
+ basic_machine=ns32k-ns
+ ;;
+ gmicro)
+ basic_machine=tron-gmicro
+ os=-sysv
+ ;;
+ go32)
+ basic_machine=i386-pc
+ os=-go32
+ ;;
+ h3050r* | hiux*)
+ basic_machine=hppa1.1-hitachi
+ os=-hiuxwe2
+ ;;
+ h8300hms)
+ basic_machine=h8300-hitachi
+ os=-hms
+ ;;
+ h8300xray)
+ basic_machine=h8300-hitachi
+ os=-xray
+ ;;
+ h8500hms)
+ basic_machine=h8500-hitachi
+ os=-hms
+ ;;
+ harris)
+ basic_machine=m88k-harris
+ os=-sysv3
+ ;;
+ hp300-*)
+ basic_machine=m68k-hp
+ ;;
+ hp300bsd)
+ basic_machine=m68k-hp
+ os=-bsd
+ ;;
+ hp300hpux)
+ basic_machine=m68k-hp
+ os=-hpux
+ ;;
+ hp3k9[0-9][0-9] | hp9[0-9][0-9])
+ basic_machine=hppa1.0-hp
+ ;;
+ hp9k2[0-9][0-9] | hp9k31[0-9])
+ basic_machine=m68000-hp
+ ;;
+ hp9k3[2-9][0-9])
+ basic_machine=m68k-hp
+ ;;
+ hp9k6[0-9][0-9] | hp6[0-9][0-9])
+ basic_machine=hppa1.0-hp
+ ;;
+ hp9k7[0-79][0-9] | hp7[0-79][0-9])
+ basic_machine=hppa1.1-hp
+ ;;
+ hp9k78[0-9] | hp78[0-9])
+ # FIXME: really hppa2.0-hp
+ basic_machine=hppa1.1-hp
+ ;;
+ hp9k8[67]1 | hp8[67]1 | hp9k80[24] | hp80[24] | hp9k8[78]9 | hp8[78]9 | hp9k893 | hp893)
+ # FIXME: really hppa2.0-hp
+ basic_machine=hppa1.1-hp
+ ;;
+ hp9k8[0-9][13679] | hp8[0-9][13679])
+ basic_machine=hppa1.1-hp
+ ;;
+ hp9k8[0-9][0-9] | hp8[0-9][0-9])
+ basic_machine=hppa1.0-hp
+ ;;
+ hppa-next)
+ os=-nextstep3
+ ;;
+ hppaosf)
+ basic_machine=hppa1.1-hp
+ os=-osf
+ ;;
+ hppro)
+ basic_machine=hppa1.1-hp
+ os=-proelf
+ ;;
+ i370-ibm* | ibm*)
+ basic_machine=i370-ibm
+ ;;
+# I'm not sure what "Sysv32" means. Should this be sysv3.2?
+ i*86v32)
+ basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
+ os=-sysv32
+ ;;
+ i*86v4*)
+ basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
+ os=-sysv4
+ ;;
+ i*86v)
+ basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
+ os=-sysv
+ ;;
+ i*86sol2)
+ basic_machine=`echo $1 | sed -e 's/86.*/86-pc/'`
+ os=-solaris2
+ ;;
+ i386mach)
+ basic_machine=i386-mach
+ os=-mach
+ ;;
+ i386-vsta | vsta)
+ basic_machine=i386-unknown
+ os=-vsta
+ ;;
+ iris | iris4d)
+ basic_machine=mips-sgi
+ case $os in
+ -irix*)
+ ;;
+ *)
+ os=-irix4
+ ;;
+ esac
+ ;;
+ isi68 | isi)
+ basic_machine=m68k-isi
+ os=-sysv
+ ;;
+ m68knommu)
+ basic_machine=m68k-unknown
+ os=-linux
+ ;;
+ m68knommu-*)
+ basic_machine=m68k-`echo $basic_machine | sed 's/^[^-]*-//'`
+ os=-linux
+ ;;
+ m88k-omron*)
+ basic_machine=m88k-omron
+ ;;
+ magnum | m3230)
+ basic_machine=mips-mips
+ os=-sysv
+ ;;
+ merlin)
+ basic_machine=ns32k-utek
+ os=-sysv
+ ;;
+ microblaze)
+ basic_machine=microblaze-xilinx
+ ;;
+ mingw32)
+ basic_machine=i386-pc
+ os=-mingw32
+ ;;
+ mingw32ce)
+ basic_machine=arm-unknown
+ os=-mingw32ce
+ ;;
+ miniframe)
+ basic_machine=m68000-convergent
+ ;;
+ *mint | -mint[0-9]* | *MiNT | *MiNT[0-9]*)
+ basic_machine=m68k-atari
+ os=-mint
+ ;;
+ mips3*-*)
+ basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
+ ;;
+ mips3*)
+ basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`-unknown
+ ;;
+ monitor)
+ basic_machine=m68k-rom68k
+ os=-coff
+ ;;
+ morphos)
+ basic_machine=powerpc-unknown
+ os=-morphos
+ ;;
+ msdos)
+ basic_machine=i386-pc
+ os=-msdos
+ ;;
+ ms1-*)
+ basic_machine=`echo $basic_machine | sed -e 's/ms1-/mt-/'`
+ ;;
+ mvs)
+ basic_machine=i370-ibm
+ os=-mvs
+ ;;
+ ncr3000)
+ basic_machine=i486-ncr
+ os=-sysv4
+ ;;
+ netbsd386)
+ basic_machine=i386-unknown
+ os=-netbsd
+ ;;
+ netwinder)
+ basic_machine=armv4l-rebel
+ os=-linux
+ ;;
+ news | news700 | news800 | news900)
+ basic_machine=m68k-sony
+ os=-newsos
+ ;;
+ news1000)
+ basic_machine=m68030-sony
+ os=-newsos
+ ;;
+ news-3600 | risc-news)
+ basic_machine=mips-sony
+ os=-newsos
+ ;;
+ necv70)
+ basic_machine=v70-nec
+ os=-sysv
+ ;;
+ next | m*-next )
+ basic_machine=m68k-next
+ case $os in
+ -nextstep* )
+ ;;
+ -ns2*)
+ os=-nextstep2
+ ;;
+ *)
+ os=-nextstep3
+ ;;
+ esac
+ ;;
+ nh3000)
+ basic_machine=m68k-harris
+ os=-cxux
+ ;;
+ nh[45]000)
+ basic_machine=m88k-harris
+ os=-cxux
+ ;;
+ nindy960)
+ basic_machine=i960-intel
+ os=-nindy
+ ;;
+ mon960)
+ basic_machine=i960-intel
+ os=-mon960
+ ;;
+ nonstopux)
+ basic_machine=mips-compaq
+ os=-nonstopux
+ ;;
+ np1)
+ basic_machine=np1-gould
+ ;;
+ nsr-tandem)
+ basic_machine=nsr-tandem
+ ;;
+ op50n-* | op60c-*)
+ basic_machine=hppa1.1-oki
+ os=-proelf
+ ;;
+ openrisc | openrisc-*)
+ basic_machine=or32-unknown
+ ;;
+ os400)
+ basic_machine=powerpc-ibm
+ os=-os400
+ ;;
+ OSE68000 | ose68000)
+ basic_machine=m68000-ericsson
+ os=-ose
+ ;;
+ os68k)
+ basic_machine=m68k-none
+ os=-os68k
+ ;;
+ pa-hitachi)
+ basic_machine=hppa1.1-hitachi
+ os=-hiuxwe2
+ ;;
+ paragon)
+ basic_machine=i860-intel
+ os=-osf
+ ;;
+ parisc)
+ basic_machine=hppa-unknown
+ os=-linux
+ ;;
+ parisc-*)
+ basic_machine=hppa-`echo $basic_machine | sed 's/^[^-]*-//'`
+ os=-linux
+ ;;
+ pbd)
+ basic_machine=sparc-tti
+ ;;
+ pbb)
+ basic_machine=m68k-tti
+ ;;
+ pc532 | pc532-*)
+ basic_machine=ns32k-pc532
+ ;;
+ pc98)
+ basic_machine=i386-pc
+ ;;
+ pc98-*)
+ basic_machine=i386-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ pentium | p5 | k5 | k6 | nexgen | viac3)
+ basic_machine=i586-pc
+ ;;
+ pentiumpro | p6 | 6x86 | athlon | athlon_*)
+ basic_machine=i686-pc
+ ;;
+ pentiumii | pentium2 | pentiumiii | pentium3)
+ basic_machine=i686-pc
+ ;;
+ pentium4)
+ basic_machine=i786-pc
+ ;;
+ pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
+ basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ pentiumpro-* | p6-* | 6x86-* | athlon-*)
+ basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
+ basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ pentium4-*)
+ basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ pn)
+ basic_machine=pn-gould
+ ;;
+ power) basic_machine=power-ibm
+ ;;
+ ppc) basic_machine=powerpc-unknown
+ ;;
+ ppc-*) basic_machine=powerpc-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ ppcle | powerpclittle | ppc-le | powerpc-little)
+ basic_machine=powerpcle-unknown
+ ;;
+ ppcle-* | powerpclittle-*)
+ basic_machine=powerpcle-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ ppc64) basic_machine=powerpc64-unknown
+ ;;
+ ppc64-*) basic_machine=powerpc64-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ ppc64le | powerpc64little | ppc64-le | powerpc64-little)
+ basic_machine=powerpc64le-unknown
+ ;;
+ ppc64le-* | powerpc64little-*)
+ basic_machine=powerpc64le-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ ps2)
+ basic_machine=i386-ibm
+ ;;
+ pw32)
+ basic_machine=i586-unknown
+ os=-pw32
+ ;;
+ rdos)
+ basic_machine=i386-pc
+ os=-rdos
+ ;;
+ rom68k)
+ basic_machine=m68k-rom68k
+ os=-coff
+ ;;
+ rm[46]00)
+ basic_machine=mips-siemens
+ ;;
+ rtpc | rtpc-*)
+ basic_machine=romp-ibm
+ ;;
+ s390 | s390-*)
+ basic_machine=s390-ibm
+ ;;
+ s390x | s390x-*)
+ basic_machine=s390x-ibm
+ ;;
+ sa29200)
+ basic_machine=a29k-amd
+ os=-udi
+ ;;
+ sb1)
+ basic_machine=mipsisa64sb1-unknown
+ ;;
+ sb1el)
+ basic_machine=mipsisa64sb1el-unknown
+ ;;
+ sde)
+ basic_machine=mipsisa32-sde
+ os=-elf
+ ;;
+ sei)
+ basic_machine=mips-sei
+ os=-seiux
+ ;;
+ sequent)
+ basic_machine=i386-sequent
+ ;;
+ sh)
+ basic_machine=sh-hitachi
+ os=-hms
+ ;;
+ sh5el)
+ basic_machine=sh5le-unknown
+ ;;
+ sh64)
+ basic_machine=sh64-unknown
+ ;;
+ sparclite-wrs | simso-wrs)
+ basic_machine=sparclite-wrs
+ os=-vxworks
+ ;;
+ sps7)
+ basic_machine=m68k-bull
+ os=-sysv2
+ ;;
+ spur)
+ basic_machine=spur-unknown
+ ;;
+ st2000)
+ basic_machine=m68k-tandem
+ ;;
+ stratus)
+ basic_machine=i860-stratus
+ os=-sysv4
+ ;;
+ sun2)
+ basic_machine=m68000-sun
+ ;;
+ sun2os3)
+ basic_machine=m68000-sun
+ os=-sunos3
+ ;;
+ sun2os4)
+ basic_machine=m68000-sun
+ os=-sunos4
+ ;;
+ sun3os3)
+ basic_machine=m68k-sun
+ os=-sunos3
+ ;;
+ sun3os4)
+ basic_machine=m68k-sun
+ os=-sunos4
+ ;;
+ sun4os3)
+ basic_machine=sparc-sun
+ os=-sunos3
+ ;;
+ sun4os4)
+ basic_machine=sparc-sun
+ os=-sunos4
+ ;;
+ sun4sol2)
+ basic_machine=sparc-sun
+ os=-solaris2
+ ;;
+ sun3 | sun3-*)
+ basic_machine=m68k-sun
+ ;;
+ sun4)
+ basic_machine=sparc-sun
+ ;;
+ sun386 | sun386i | roadrunner)
+ basic_machine=i386-sun
+ ;;
+ sv1)
+ basic_machine=sv1-cray
+ os=-unicos
+ ;;
+ symmetry)
+ basic_machine=i386-sequent
+ os=-dynix
+ ;;
+ t3e)
+ basic_machine=alphaev5-cray
+ os=-unicos
+ ;;
+ t90)
+ basic_machine=t90-cray
+ os=-unicos
+ ;;
+ tic54x | c54x*)
+ basic_machine=tic54x-unknown
+ os=-coff
+ ;;
+ tic55x | c55x*)
+ basic_machine=tic55x-unknown
+ os=-coff
+ ;;
+ tic6x | c6x*)
+ basic_machine=tic6x-unknown
+ os=-coff
+ ;;
+ tile*)
+ basic_machine=tile-unknown
+ os=-linux-gnu
+ ;;
+ tx39)
+ basic_machine=mipstx39-unknown
+ ;;
+ tx39el)
+ basic_machine=mipstx39el-unknown
+ ;;
+ toad1)
+ basic_machine=pdp10-xkl
+ os=-tops20
+ ;;
+ tower | tower-32)
+ basic_machine=m68k-ncr
+ ;;
+ tpf)
+ basic_machine=s390x-ibm
+ os=-tpf
+ ;;
+ udi29k)
+ basic_machine=a29k-amd
+ os=-udi
+ ;;
+ ultra3)
+ basic_machine=a29k-nyu
+ os=-sym1
+ ;;
+ v810 | necv810)
+ basic_machine=v810-nec
+ os=-none
+ ;;
+ vaxv)
+ basic_machine=vax-dec
+ os=-sysv
+ ;;
+ vms)
+ basic_machine=vax-dec
+ os=-vms
+ ;;
+ vpp*|vx|vx-*)
+ basic_machine=f301-fujitsu
+ ;;
+ vxworks960)
+ basic_machine=i960-wrs
+ os=-vxworks
+ ;;
+ vxworks68)
+ basic_machine=m68k-wrs
+ os=-vxworks
+ ;;
+ vxworks29k)
+ basic_machine=a29k-wrs
+ os=-vxworks
+ ;;
+ w65*)
+ basic_machine=w65-wdc
+ os=-none
+ ;;
+ w89k-*)
+ basic_machine=hppa1.1-winbond
+ os=-proelf
+ ;;
+ xbox)
+ basic_machine=i686-pc
+ os=-mingw32
+ ;;
+ xps | xps100)
+ basic_machine=xps100-honeywell
+ ;;
+ ymp)
+ basic_machine=ymp-cray
+ os=-unicos
+ ;;
+ z8k-*-coff)
+ basic_machine=z8k-unknown
+ os=-sim
+ ;;
+ z80-*-coff)
+ basic_machine=z80-unknown
+ os=-sim
+ ;;
+ none)
+ basic_machine=none-none
+ os=-none
+ ;;
+
+# Here we handle the default manufacturer of certain CPU types. It is in
+# some cases the only manufacturer, in others, it is the most popular.
+ w89k)
+ basic_machine=hppa1.1-winbond
+ ;;
+ op50n)
+ basic_machine=hppa1.1-oki
+ ;;
+ op60c)
+ basic_machine=hppa1.1-oki
+ ;;
+ romp)
+ basic_machine=romp-ibm
+ ;;
+ mmix)
+ basic_machine=mmix-knuth
+ ;;
+ rs6000)
+ basic_machine=rs6000-ibm
+ ;;
+ vax)
+ basic_machine=vax-dec
+ ;;
+ pdp10)
+ # there are many clones, so DEC is not a safe bet
+ basic_machine=pdp10-unknown
+ ;;
+ pdp11)
+ basic_machine=pdp11-dec
+ ;;
+ we32k)
+ basic_machine=we32k-att
+ ;;
+ sh[1234] | sh[24]a | sh[24]aeb | sh[34]eb | sh[1234]le | sh[23]ele)
+ basic_machine=sh-unknown
+ ;;
+ sparc | sparcv8 | sparcv9 | sparcv9b | sparcv9v)
+ basic_machine=sparc-sun
+ ;;
+ cydra)
+ basic_machine=cydra-cydrome
+ ;;
+ orion)
+ basic_machine=orion-highlevel
+ ;;
+ orion105)
+ basic_machine=clipper-highlevel
+ ;;
+ mac | mpw | mac-mpw)
+ basic_machine=m68k-apple
+ ;;
+ pmac | pmac-mpw)
+ basic_machine=powerpc-apple
+ ;;
+ *-unknown)
+ # Make sure to match an already-canonicalized machine name.
+ ;;
+ *)
+ echo Invalid configuration \`$1\': machine \`$basic_machine\' not recognized 1>&2
+ exit 1
+ ;;
+esac
+
+# Here we canonicalize certain aliases for manufacturers.
+case $basic_machine in
+ *-digital*)
+ basic_machine=`echo $basic_machine | sed 's/digital.*/dec/'`
+ ;;
+ *-commodore*)
+ basic_machine=`echo $basic_machine | sed 's/commodore.*/cbm/'`
+ ;;
+ *)
+ ;;
+esac
+
+# Decode manufacturer-specific aliases for certain operating systems.
+
+if [ x"$os" != x"" ]
+then
+case $os in
+ # First match some system type aliases
+ # that might get confused with valid system types.
+ # -solaris* is a basic system type, with this one exception.
+ -auroraux)
+ os=-auroraux
+ ;;
+ -solaris1 | -solaris1.*)
+ os=`echo $os | sed -e 's|solaris1|sunos4|'`
+ ;;
+ -solaris)
+ os=-solaris2
+ ;;
+ -svr4*)
+ os=-sysv4
+ ;;
+ -unixware*)
+ os=-sysv4.2uw
+ ;;
+ -gnu/linux*)
+ os=`echo $os | sed -e 's|gnu/linux|linux-gnu|'`
+ ;;
+ # First accept the basic system types.
+ # The portable systems comes first.
+ # Each alternative MUST END IN A *, to match a version number.
+ # -sysv* is not here because it comes later, after sysvr4.
+ -gnu* | -bsd* | -mach* | -minix* | -genix* | -ultrix* | -irix* \
+ | -*vms* | -sco* | -esix* | -isc* | -aix* | -cnk* | -sunos | -sunos[34]*\
+ | -hpux* | -unos* | -osf* | -luna* | -dgux* | -auroraux* | -solaris* \
+ | -sym* | -kopensolaris* \
+ | -amigaos* | -amigados* | -msdos* | -newsos* | -unicos* | -aof* \
+ | -aos* | -aros* \
+ | -nindy* | -vxsim* | -vxworks* | -ebmon* | -hms* | -mvs* \
+ | -clix* | -riscos* | -uniplus* | -iris* | -rtu* | -xenix* \
+ | -hiux* | -386bsd* | -knetbsd* | -mirbsd* | -netbsd* \
+ | -openbsd* | -solidbsd* \
+ | -ekkobsd* | -kfreebsd* | -freebsd* | -riscix* | -lynxos* \
+ | -bosx* | -nextstep* | -cxux* | -aout* | -elf* | -oabi* \
+ | -ptx* | -coff* | -ecoff* | -winnt* | -domain* | -vsta* \
+ | -udi* | -eabi* | -lites* | -ieee* | -go32* | -aux* \
+ | -chorusos* | -chorusrdb* | -cegcc* \
+ | -cygwin* | -pe* | -psos* | -moss* | -proelf* | -rtems* \
+ | -mingw32* | -linux-gnu* | -linux-newlib* | -linux-uclibc* \
+ | -uxpv* | -beos* | -mpeix* | -udk* \
+ | -interix* | -uwin* | -mks* | -rhapsody* | -darwin* | -opened* \
+ | -openstep* | -oskit* | -conix* | -pw32* | -nonstopux* \
+ | -storm-chaos* | -tops10* | -tenex* | -tops20* | -its* \
+ | -os2* | -vos* | -palmos* | -uclinux* | -nucleus* \
+ | -morphos* | -superux* | -rtmk* | -rtmk-nova* | -windiss* \
+ | -powermax* | -dnix* | -nx6 | -nx7 | -sei* | -dragonfly* \
+ | -skyos* | -haiku* | -rdos* | -toppers* | -drops* | -es*)
+ # Remember, each alternative MUST END IN *, to match a version number.
+ ;;
+ -qnx*)
+ case $basic_machine in
+ x86-* | i*86-*)
+ ;;
+ *)
+ os=-nto$os
+ ;;
+ esac
+ ;;
+ -nto-qnx*)
+ ;;
+ -nto*)
+ os=`echo $os | sed -e 's|nto|nto-qnx|'`
+ ;;
+ -sim | -es1800* | -hms* | -xray | -os68k* | -none* | -v88r* \
+ | -windows* | -osx | -abug | -netware* | -os9* | -beos* | -haiku* \
+ | -macos* | -mpw* | -magic* | -mmixware* | -mon960* | -lnews*)
+ ;;
+ -mac*)
+ os=`echo $os | sed -e 's|mac|macos|'`
+ ;;
+ -linux-dietlibc)
+ os=-linux-dietlibc
+ ;;
+ -linux*)
+ os=`echo $os | sed -e 's|linux|linux-gnu|'`
+ ;;
+ -sunos5*)
+ os=`echo $os | sed -e 's|sunos5|solaris2|'`
+ ;;
+ -sunos6*)
+ os=`echo $os | sed -e 's|sunos6|solaris3|'`
+ ;;
+ -opened*)
+ os=-openedition
+ ;;
+ -os400*)
+ os=-os400
+ ;;
+ -wince*)
+ os=-wince
+ ;;
+ -osfrose*)
+ os=-osfrose
+ ;;
+ -osf*)
+ os=-osf
+ ;;
+ -utek*)
+ os=-bsd
+ ;;
+ -dynix*)
+ os=-bsd
+ ;;
+ -acis*)
+ os=-aos
+ ;;
+ -atheos*)
+ os=-atheos
+ ;;
+ -syllable*)
+ os=-syllable
+ ;;
+ -386bsd)
+ os=-bsd
+ ;;
+ -ctix* | -uts*)
+ os=-sysv
+ ;;
+ -nova*)
+ os=-rtmk-nova
+ ;;
+ -ns2 )
+ os=-nextstep2
+ ;;
+ -nsk*)
+ os=-nsk
+ ;;
+ # Preserve the version number of sinix5.
+ -sinix5.*)
+ os=`echo $os | sed -e 's|sinix|sysv|'`
+ ;;
+ -sinix*)
+ os=-sysv4
+ ;;
+ -tpf*)
+ os=-tpf
+ ;;
+ -triton*)
+ os=-sysv3
+ ;;
+ -oss*)
+ os=-sysv3
+ ;;
+ -svr4)
+ os=-sysv4
+ ;;
+ -svr3)
+ os=-sysv3
+ ;;
+ -sysvr4)
+ os=-sysv4
+ ;;
+ # This must come after -sysvr4.
+ -sysv*)
+ ;;
+ -ose*)
+ os=-ose
+ ;;
+ -es1800*)
+ os=-ose
+ ;;
+ -xenix)
+ os=-xenix
+ ;;
+ -*mint | -mint[0-9]* | -*MiNT | -MiNT[0-9]*)
+ os=-mint
+ ;;
+ -aros*)
+ os=-aros
+ ;;
+ -kaos*)
+ os=-kaos
+ ;;
+ -zvmoe)
+ os=-zvmoe
+ ;;
+ -dicos*)
+ os=-dicos
+ ;;
+ -none)
+ ;;
+ *)
+ # Get rid of the `-' at the beginning of $os.
+ os=`echo $os | sed 's/[^-]*-//'`
+ echo Invalid configuration \`$1\': system \`$os\' not recognized 1>&2
+ exit 1
+ ;;
+esac
+else
+
+# Here we handle the default operating systems that come with various machines.
+# The value should be what the vendor currently ships out the door with their
+# machine or put another way, the most popular os provided with the machine.
+
+# Note that if you're going to try to match "-MANUFACTURER" here (say,
+# "-sun"), then you have to tell the case statement up towards the top
+# that MANUFACTURER isn't an operating system. Otherwise, code above
+# will signal an error saying that MANUFACTURER isn't an operating
+# system, and we'll never get to this point.
+
+case $basic_machine in
+ score-*)
+ os=-elf
+ ;;
+ spu-*)
+ os=-elf
+ ;;
+ *-acorn)
+ os=-riscix1.2
+ ;;
+ arm*-rebel)
+ os=-linux
+ ;;
+ arm*-semi)
+ os=-aout
+ ;;
+ c4x-* | tic4x-*)
+ os=-coff
+ ;;
+ # This must come before the *-dec entry.
+ pdp10-*)
+ os=-tops20
+ ;;
+ pdp11-*)
+ os=-none
+ ;;
+ *-dec | vax-*)
+ os=-ultrix4.2
+ ;;
+ m68*-apollo)
+ os=-domain
+ ;;
+ i386-sun)
+ os=-sunos4.0.2
+ ;;
+ m68000-sun)
+ os=-sunos3
+ # This also exists in the configure program, but was not the
+ # default.
+ # os=-sunos4
+ ;;
+ m68*-cisco)
+ os=-aout
+ ;;
+ mep-*)
+ os=-elf
+ ;;
+ mips*-cisco)
+ os=-elf
+ ;;
+ mips*-*)
+ os=-elf
+ ;;
+ or32-*)
+ os=-coff
+ ;;
+ *-tti) # must be before sparc entry or we get the wrong os.
+ os=-sysv3
+ ;;
+ sparc-* | *-sun)
+ os=-sunos4.1.1
+ ;;
+ *-be)
+ os=-beos
+ ;;
+ *-haiku)
+ os=-haiku
+ ;;
+ *-ibm)
+ os=-aix
+ ;;
+ *-knuth)
+ os=-mmixware
+ ;;
+ *-wec)
+ os=-proelf
+ ;;
+ *-winbond)
+ os=-proelf
+ ;;
+ *-oki)
+ os=-proelf
+ ;;
+ *-hp)
+ os=-hpux
+ ;;
+ *-hitachi)
+ os=-hiux
+ ;;
+ i860-* | *-att | *-ncr | *-altos | *-motorola | *-convergent)
+ os=-sysv
+ ;;
+ *-cbm)
+ os=-amigaos
+ ;;
+ *-dg)
+ os=-dgux
+ ;;
+ *-dolphin)
+ os=-sysv3
+ ;;
+ m68k-ccur)
+ os=-rtu
+ ;;
+ m88k-omron*)
+ os=-luna
+ ;;
+ *-next )
+ os=-nextstep
+ ;;
+ *-sequent)
+ os=-ptx
+ ;;
+ *-crds)
+ os=-unos
+ ;;
+ *-ns)
+ os=-genix
+ ;;
+ i370-*)
+ os=-mvs
+ ;;
+ *-next)
+ os=-nextstep3
+ ;;
+ *-gould)
+ os=-sysv
+ ;;
+ *-highlevel)
+ os=-bsd
+ ;;
+ *-encore)
+ os=-bsd
+ ;;
+ *-sgi)
+ os=-irix
+ ;;
+ *-siemens)
+ os=-sysv4
+ ;;
+ *-masscomp)
+ os=-rtu
+ ;;
+ f30[01]-fujitsu | f700-fujitsu)
+ os=-uxpv
+ ;;
+ *-rom68k)
+ os=-coff
+ ;;
+ *-*bug)
+ os=-coff
+ ;;
+ *-apple)
+ os=-macos
+ ;;
+ *-atari*)
+ os=-mint
+ ;;
+ *)
+ os=-none
+ ;;
+esac
+fi
+
+# Here we handle the case where we know the os, and the CPU type, but not the
+# manufacturer. We pick the logical manufacturer.
+vendor=unknown
+case $basic_machine in
+ *-unknown)
+ case $os in
+ -riscix*)
+ vendor=acorn
+ ;;
+ -sunos*)
+ vendor=sun
+ ;;
+ -cnk*|-aix*)
+ vendor=ibm
+ ;;
+ -beos*)
+ vendor=be
+ ;;
+ -hpux*)
+ vendor=hp
+ ;;
+ -mpeix*)
+ vendor=hp
+ ;;
+ -hiux*)
+ vendor=hitachi
+ ;;
+ -unos*)
+ vendor=crds
+ ;;
+ -dgux*)
+ vendor=dg
+ ;;
+ -luna*)
+ vendor=omron
+ ;;
+ -genix*)
+ vendor=ns
+ ;;
+ -mvs* | -opened*)
+ vendor=ibm
+ ;;
+ -os400*)
+ vendor=ibm
+ ;;
+ -ptx*)
+ vendor=sequent
+ ;;
+ -tpf*)
+ vendor=ibm
+ ;;
+ -vxsim* | -vxworks* | -windiss*)
+ vendor=wrs
+ ;;
+ -aux*)
+ vendor=apple
+ ;;
+ -hms*)
+ vendor=hitachi
+ ;;
+ -mpw* | -macos*)
+ vendor=apple
+ ;;
+ -*mint | -mint[0-9]* | -*MiNT | -MiNT[0-9]*)
+ vendor=atari
+ ;;
+ -vos*)
+ vendor=stratus
+ ;;
+ esac
+ basic_machine=`echo $basic_machine | sed "s/unknown/$vendor/"`
+ ;;
+esac
+
+echo $basic_machine$os
+exit
+
+# Local variables:
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "timestamp='"
+# time-stamp-format: "%:y-%02m-%02d"
+# time-stamp-end: "'"
+# End:
diff --git a/configure b/configure
new file mode 100755
index 0000000..2399678
--- /dev/null
+++ b/configure
@@ -0,0 +1,27044 @@
+#! /bin/sh
+# Guess values for system-dependent variables and create Makefiles.
+# Generated by GNU Autoconf 2.63 for PLATO 2.0.0.
+#
+# Report bugs to <software at ritchielab.psu.edu>.
+#
+# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
+# 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
+# This configure script is free software; the Free Software Foundation
+# gives unlimited permission to copy, distribute and modify it.
+## --------------------- ##
+## M4sh Initialization. ##
+## --------------------- ##
+
+# Be more Bourne compatible
+DUALCASE=1; export DUALCASE # for MKS sh
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+
+
+# PATH needs CR
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
+
+as_nl='
+'
+export as_nl
+# Printing a long string crashes Solaris 7 /usr/bin/printf.
+as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
+if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+ as_echo='printf %s\n'
+ as_echo_n='printf %s'
+else
+ if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
+ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
+ as_echo_n='/usr/ucb/echo -n'
+ else
+ as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
+ as_echo_n_body='eval
+ arg=$1;
+ case $arg in
+ *"$as_nl"*)
+ expr "X$arg" : "X\\(.*\\)$as_nl";
+ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
+ esac;
+ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
+ '
+ export as_echo_n_body
+ as_echo_n='sh -c $as_echo_n_body as_echo'
+ fi
+ export as_echo_body
+ as_echo='sh -c $as_echo_body as_echo'
+fi
+
+# The user is always right.
+if test "${PATH_SEPARATOR+set}" != set; then
+ PATH_SEPARATOR=:
+ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
+ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
+ PATH_SEPARATOR=';'
+ }
+fi
+
+# Support unset when possible.
+if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+ as_unset=unset
+else
+ as_unset=false
+fi
+
+
+# IFS
+# We need space, tab and new line, in precisely that order. Quoting is
+# there to prevent editors from complaining about space-tab.
+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
+# splitting by setting IFS to empty value.)
+IFS=" "" $as_nl"
+
+# Find who we are. Look in the path if we contain no directory separator.
+case $0 in
+ *[\\/]* ) as_myself=$0 ;;
+ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+done
+IFS=$as_save_IFS
+
+ ;;
+esac
+# We did not find ourselves, most probably we were run as `sh COMMAND'
+# in which case we are not to be found in the path.
+if test "x$as_myself" = x; then
+ as_myself=$0
+fi
+if test ! -f "$as_myself"; then
+ $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
+ { (exit 1); exit 1; }
+fi
+
+# Work around bugs in pre-3.0 UWIN ksh.
+for as_var in ENV MAIL MAILPATH
+do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+done
+PS1='$ '
+PS2='> '
+PS4='+ '
+
+# NLS nuisances.
+LC_ALL=C
+export LC_ALL
+LANGUAGE=C
+export LANGUAGE
+
+# Required to use basename.
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
+else
+ as_expr=false
+fi
+
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
+ as_basename=basename
+else
+ as_basename=false
+fi
+
+
+# Name of the executable.
+as_me=`$as_basename -- "$0" ||
+$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
+ X"$0" : 'X\(//\)$' \| \
+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X/"$0" |
+ sed '/^.*\/\([^/][^/]*\)\/*$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+
+# CDPATH.
+$as_unset CDPATH
+
+
+if test "x$CONFIG_SHELL" = x; then
+ if (eval ":") 2>/dev/null; then
+ as_have_required=yes
+else
+ as_have_required=no
+fi
+
+ if test $as_have_required = yes && (eval ":
+(as_func_return () {
+ (exit \$1)
+}
+as_func_success () {
+ as_func_return 0
+}
+as_func_failure () {
+ as_func_return 1
+}
+as_func_ret_success () {
+ return 0
+}
+as_func_ret_failure () {
+ return 1
+}
+
+exitcode=0
+if as_func_success; then
+ :
+else
+ exitcode=1
+ echo as_func_success failed.
+fi
+
+if as_func_failure; then
+ exitcode=1
+ echo as_func_failure succeeded.
+fi
+
+if as_func_ret_success; then
+ :
+else
+ exitcode=1
+ echo as_func_ret_success failed.
+fi
+
+if as_func_ret_failure; then
+ exitcode=1
+ echo as_func_ret_failure succeeded.
+fi
+
+if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
+ :
+else
+ exitcode=1
+ echo positional parameters were not saved.
+fi
+
+test \$exitcode = 0) || { (exit 1); exit 1; }
+
+(
+ as_lineno_1=\$LINENO
+ as_lineno_2=\$LINENO
+ test \"x\$as_lineno_1\" != \"x\$as_lineno_2\" &&
+ test \"x\`expr \$as_lineno_1 + 1\`\" = \"x\$as_lineno_2\") || { (exit 1); exit 1; }
+") 2> /dev/null; then
+ :
+else
+ as_candidate_shells=
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ case $as_dir in
+ /*)
+ for as_base in sh bash ksh sh5; do
+ as_candidate_shells="$as_candidate_shells $as_dir/$as_base"
+ done;;
+ esac
+done
+IFS=$as_save_IFS
+
+
+ for as_shell in $as_candidate_shells $SHELL; do
+ # Try only shells that exist, to save several forks.
+ if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
+ { ("$as_shell") 2> /dev/null <<\_ASEOF
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+:
+_ASEOF
+}; then
+ CONFIG_SHELL=$as_shell
+ as_have_required=yes
+ if { "$as_shell" 2> /dev/null <<\_ASEOF
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+:
+(as_func_return () {
+ (exit $1)
+}
+as_func_success () {
+ as_func_return 0
+}
+as_func_failure () {
+ as_func_return 1
+}
+as_func_ret_success () {
+ return 0
+}
+as_func_ret_failure () {
+ return 1
+}
+
+exitcode=0
+if as_func_success; then
+ :
+else
+ exitcode=1
+ echo as_func_success failed.
+fi
+
+if as_func_failure; then
+ exitcode=1
+ echo as_func_failure succeeded.
+fi
+
+if as_func_ret_success; then
+ :
+else
+ exitcode=1
+ echo as_func_ret_success failed.
+fi
+
+if as_func_ret_failure; then
+ exitcode=1
+ echo as_func_ret_failure succeeded.
+fi
+
+if ( set x; as_func_ret_success y && test x = "$1" ); then
+ :
+else
+ exitcode=1
+ echo positional parameters were not saved.
+fi
+
+test $exitcode = 0) || { (exit 1); exit 1; }
+
+(
+ as_lineno_1=$LINENO
+ as_lineno_2=$LINENO
+ test "x$as_lineno_1" != "x$as_lineno_2" &&
+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2") || { (exit 1); exit 1; }
+
+_ASEOF
+}; then
+ break
+fi
+
+fi
+
+ done
+
+ if test "x$CONFIG_SHELL" != x; then
+ for as_var in BASH_ENV ENV
+ do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+ done
+ export CONFIG_SHELL
+ exec "$CONFIG_SHELL" "$as_myself" ${1+"$@"}
+fi
+
+
+ if test $as_have_required = no; then
+ echo This script requires a shell more modern than all the
+ echo shells that I found on your system. Please install a
+ echo modern shell, or manually run the script under such a
+ echo shell if you do have one.
+ { (exit 1); exit 1; }
+fi
+
+
+fi
+
+fi
+
+
+
+(eval "as_func_return () {
+ (exit \$1)
+}
+as_func_success () {
+ as_func_return 0
+}
+as_func_failure () {
+ as_func_return 1
+}
+as_func_ret_success () {
+ return 0
+}
+as_func_ret_failure () {
+ return 1
+}
+
+exitcode=0
+if as_func_success; then
+ :
+else
+ exitcode=1
+ echo as_func_success failed.
+fi
+
+if as_func_failure; then
+ exitcode=1
+ echo as_func_failure succeeded.
+fi
+
+if as_func_ret_success; then
+ :
+else
+ exitcode=1
+ echo as_func_ret_success failed.
+fi
+
+if as_func_ret_failure; then
+ exitcode=1
+ echo as_func_ret_failure succeeded.
+fi
+
+if ( set x; as_func_ret_success y && test x = \"\$1\" ); then
+ :
+else
+ exitcode=1
+ echo positional parameters were not saved.
+fi
+
+test \$exitcode = 0") || {
+ echo No shell found that supports shell functions.
+ echo Please tell bug-autoconf at gnu.org about your system,
+ echo including any error possibly output before this message.
+ echo This can help us improve future autoconf versions.
+ echo Configuration will now proceed without shell functions.
+}
+
+
+
+ as_lineno_1=$LINENO
+ as_lineno_2=$LINENO
+ test "x$as_lineno_1" != "x$as_lineno_2" &&
+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
+
+ # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
+ # uniformly replaced by the line number. The first 'sed' inserts a
+ # line-number line after each line using $LINENO; the second 'sed'
+ # does the real work. The second script uses 'N' to pair each
+ # line-number line with the line containing $LINENO, and appends
+ # trailing '-' during substitution so that $LINENO is not a special
+ # case at line end.
+ # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
+ # scripts with optimization help from Paolo Bonzini. Blame Lee
+ # E. McMahon (1931-1989) for sed's syntax. :-)
+ sed -n '
+ p
+ /[$]LINENO/=
+ ' <$as_myself |
+ sed '
+ s/[$]LINENO.*/&-/
+ t lineno
+ b
+ :lineno
+ N
+ :loop
+ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
+ t loop
+ s/-\n.*//
+ ' >$as_me.lineno &&
+ chmod +x "$as_me.lineno" ||
+ { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
+ { (exit 1); exit 1; }; }
+
+ # Don't try to exec as it changes $[0], causing all sort of problems
+ # (the dirname of $[0] is not the place where we might find the
+ # original and so on. Autoconf is especially sensitive to this).
+ . "./$as_me.lineno"
+ # Exit status is that of the last command.
+ exit
+}
+
+
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+ as_dirname=dirname
+else
+ as_dirname=false
+fi
+
+ECHO_C= ECHO_N= ECHO_T=
+case `echo -n x` in
+-n*)
+ case `echo 'x\c'` in
+ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
+ *) ECHO_C='\c';;
+ esac;;
+*)
+ ECHO_N='-n';;
+esac
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
+else
+ as_expr=false
+fi
+
+rm -f conf$$ conf$$.exe conf$$.file
+if test -d conf$$.dir; then
+ rm -f conf$$.dir/conf$$.file
+else
+ rm -f conf$$.dir
+ mkdir conf$$.dir 2>/dev/null
+fi
+if (echo >conf$$.file) 2>/dev/null; then
+ if ln -s conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s='ln -s'
+ # ... but there are two gotchas:
+ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
+ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
+ # In both cases, we have to default to `cp -p'.
+ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
+ as_ln_s='cp -p'
+ elif ln conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s=ln
+ else
+ as_ln_s='cp -p'
+ fi
+else
+ as_ln_s='cp -p'
+fi
+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
+rmdir conf$$.dir 2>/dev/null
+
+if mkdir -p . 2>/dev/null; then
+ as_mkdir_p=:
+else
+ test -d ./-p && rmdir ./-p
+ as_mkdir_p=false
+fi
+
+if test -x / >/dev/null 2>&1; then
+ as_test_x='test -x'
+else
+ if ls -dL / >/dev/null 2>&1; then
+ as_ls_L_option=L
+ else
+ as_ls_L_option=
+ fi
+ as_test_x='
+ eval sh -c '\''
+ if test -d "$1"; then
+ test -d "$1/.";
+ else
+ case $1 in
+ -*)set "./$1";;
+ esac;
+ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
+ ???[sx]*):;;*)false;;esac;fi
+ '\'' sh
+ '
+fi
+as_executable_p=$as_test_x
+
+# Sed expression to map a string onto a valid CPP name.
+as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+
+# Sed expression to map a string onto a valid variable name.
+as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+
+
+
+
+# Check that we are running under the correct shell.
+SHELL=${CONFIG_SHELL-/bin/sh}
+
+case X$lt_ECHO in
+X*--fallback-echo)
+ # Remove one level of quotation (which was required for Make).
+ ECHO=`echo "$lt_ECHO" | sed 's,\\\\\$\\$0,'$0','`
+ ;;
+esac
+
+ECHO=${lt_ECHO-echo}
+if test "X$1" = X--no-reexec; then
+ # Discard the --no-reexec flag, and continue.
+ shift
+elif test "X$1" = X--fallback-echo; then
+ # Avoid inline document here, it may be left over
+ :
+elif test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' ; then
+ # Yippee, $ECHO works!
+ :
+else
+ # Restart under the correct shell.
+ exec $SHELL "$0" --no-reexec ${1+"$@"}
+fi
+
+if test "X$1" = X--fallback-echo; then
+ # used as fallback echo
+ shift
+ cat <<_LT_EOF
+$*
+_LT_EOF
+ exit 0
+fi
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+if test -z "$lt_ECHO"; then
+ if test "X${echo_test_string+set}" != Xset; then
+ # find a string as large as possible, as long as the shell can cope with it
+ for cmd in 'sed 50q "$0"' 'sed 20q "$0"' 'sed 10q "$0"' 'sed 2q "$0"' 'echo test'; do
+ # expected sizes: less than 2Kb, 1Kb, 512 bytes, 16 bytes, ...
+ if { echo_test_string=`eval $cmd`; } 2>/dev/null &&
+ { test "X$echo_test_string" = "X$echo_test_string"; } 2>/dev/null
+ then
+ break
+ fi
+ done
+ fi
+
+ if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ :
+ else
+ # The Solaris, AIX, and Digital Unix default echo programs unquote
+ # backslashes. This makes it impossible to quote backslashes using
+ # echo "$something" | sed 's/\\/\\\\/g'
+ #
+ # So, first we look for a working echo in the user's PATH.
+
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ for dir in $PATH /usr/ucb; do
+ IFS="$lt_save_ifs"
+ if (test -f $dir/echo || test -f $dir/echo$ac_exeext) &&
+ test "X`($dir/echo '\t') 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`($dir/echo "$echo_test_string") 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ ECHO="$dir/echo"
+ break
+ fi
+ done
+ IFS="$lt_save_ifs"
+
+ if test "X$ECHO" = Xecho; then
+ # We didn't find a better echo, so look for alternatives.
+ if test "X`{ print -r '\t'; } 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`{ print -r "$echo_test_string"; } 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ # This shell has a builtin print -r that does the trick.
+ ECHO='print -r'
+ elif { test -f /bin/ksh || test -f /bin/ksh$ac_exeext; } &&
+ test "X$CONFIG_SHELL" != X/bin/ksh; then
+ # If we have ksh, try running configure again with it.
+ ORIGINAL_CONFIG_SHELL=${CONFIG_SHELL-/bin/sh}
+ export ORIGINAL_CONFIG_SHELL
+ CONFIG_SHELL=/bin/ksh
+ export CONFIG_SHELL
+ exec $CONFIG_SHELL "$0" --no-reexec ${1+"$@"}
+ else
+ # Try using printf.
+ ECHO='printf %s\n'
+ if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ # Cool, printf works
+ :
+ elif echo_testing_string=`($ORIGINAL_CONFIG_SHELL "$0" --fallback-echo '\t') 2>/dev/null` &&
+ test "X$echo_testing_string" = 'X\t' &&
+ echo_testing_string=`($ORIGINAL_CONFIG_SHELL "$0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ CONFIG_SHELL=$ORIGINAL_CONFIG_SHELL
+ export CONFIG_SHELL
+ SHELL="$CONFIG_SHELL"
+ export SHELL
+ ECHO="$CONFIG_SHELL $0 --fallback-echo"
+ elif echo_testing_string=`($CONFIG_SHELL "$0" --fallback-echo '\t') 2>/dev/null` &&
+ test "X$echo_testing_string" = 'X\t' &&
+ echo_testing_string=`($CONFIG_SHELL "$0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ ECHO="$CONFIG_SHELL $0 --fallback-echo"
+ else
+ # maybe with a smaller string...
+ prev=:
+
+ for cmd in 'echo test' 'sed 2q "$0"' 'sed 10q "$0"' 'sed 20q "$0"' 'sed 50q "$0"'; do
+ if { test "X$echo_test_string" = "X`eval $cmd`"; } 2>/dev/null
+ then
+ break
+ fi
+ prev="$cmd"
+ done
+
+ if test "$prev" != 'sed 50q "$0"'; then
+ echo_test_string=`eval $prev`
+ export echo_test_string
+ exec ${ORIGINAL_CONFIG_SHELL-${CONFIG_SHELL-/bin/sh}} "$0" ${1+"$@"}
+ else
+ # Oops. We lost completely, so just stick with echo.
+ ECHO=echo
+ fi
+ fi
+ fi
+ fi
+ fi
+fi
+
+# Copy echo and quote the copy suitably for passing to libtool from
+# the Makefile, instead of quoting the original, which is used later.
+lt_ECHO=$ECHO
+if test "X$lt_ECHO" = "X$CONFIG_SHELL $0 --fallback-echo"; then
+ lt_ECHO="$CONFIG_SHELL \\\$\$0 --fallback-echo"
+fi
+
+
+
+
+exec 7<&0 </dev/null 6>&1
+
+# Name of the host.
+# hostname on some systems (SVR3.2, Linux) returns a bogus exit status,
+# so uname gets run too.
+ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
+
+#
+# Initializations.
+#
+ac_default_prefix=/usr/local
+ac_clean_files=
+ac_config_libobj_dir=.
+LIBOBJS=
+cross_compiling=no
+subdirs=
+MFLAGS=
+MAKEFLAGS=
+SHELL=${CONFIG_SHELL-/bin/sh}
+
+# Identity of this package.
+PACKAGE_NAME='PLATO'
+PACKAGE_TARNAME='plato'
+PACKAGE_VERSION='2.0.0'
+PACKAGE_STRING='PLATO 2.0.0'
+PACKAGE_BUGREPORT='software at ritchielab.psu.edu'
+
+# Factoring default headers for most tests.
+ac_includes_default="\
+#include <stdio.h>
+#ifdef HAVE_SYS_TYPES_H
+# include <sys/types.h>
+#endif
+#ifdef HAVE_SYS_STAT_H
+# include <sys/stat.h>
+#endif
+#ifdef STDC_HEADERS
+# include <stdlib.h>
+# include <stddef.h>
+#else
+# ifdef HAVE_STDLIB_H
+# include <stdlib.h>
+# endif
+#endif
+#ifdef HAVE_STRING_H
+# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
+# include <memory.h>
+# endif
+# include <string.h>
+#endif
+#ifdef HAVE_STRINGS_H
+# include <strings.h>
+#endif
+#ifdef HAVE_INTTYPES_H
+# include <inttypes.h>
+#endif
+#ifdef HAVE_STDINT_H
+# include <stdint.h>
+#endif
+#ifdef HAVE_UNISTD_H
+# include <unistd.h>
+#endif"
+
+ac_header_list=
+ac_func_list=
+ac_unique_file="main.cpp"
+ac_subst_vars='am__EXEEXT_FALSE
+am__EXEEXT_TRUE
+LTLIBOBJS
+am__fastdepCXX_FALSE
+am__fastdepCXX_TRUE
+CXXDEPMODE
+am__fastdepCC_FALSE
+am__fastdepCC_TRUE
+CCDEPMODE
+AMDEPBACKSLASH
+AMDEP_FALSE
+AMDEP_TRUE
+am__quote
+am__include
+DEPDIR
+am__untar
+am__tar
+AMTAR
+am__leading_dot
+mkdir_p
+MKDIR_P
+INSTALL_STRIP_PROGRAM
+install_sh
+MAKEINFO
+AUTOHEADER
+AUTOMAKE
+AUTOCONF
+ACLOCAL
+VERSION
+PACKAGE
+CYGPATH_W
+am__isrc
+POW_LIB
+LIBOBJS
+HAVE_INLINE
+AWK
+PYTHON_VERSION
+PYTHON
+BOOST_SERIALIZATION_LIB
+BOOST_IOSTREAMS_LIB
+BOOST_PROGRAM_OPTIONS_LIB
+BOOST_FILESYSTEM_LIB
+BOOST_REGEX_LIB
+BOOST_THREAD_LIB
+BOOST_SYSTEM_LIB
+BOOST_LDFLAGS
+BOOST_CPPFLAGS
+SOCI_SQLITE_LIB
+SOCI_SQLITE_LDFLAGS
+SOCI_SQLITE_CPPFLAGS
+SOCI_LIB
+SOCI_LDFLAGS
+SOCI_CPPFLAGS
+FREETYPE_LIB
+FREETYPE_LDFLAGS
+FREETYPE_CPPFLAGS
+LIBR_LIBS
+LIBR_CFLAGS
+PNG_LIBS
+PNG_CFLAGS
+SQLITE_LIBS
+SQLITE_CFLAGS
+PKG_CONFIG
+GSL_LDFLAGS
+GSL_LIBS
+GSL_CFLAGS
+GSL_CONFIG
+HAVE_MYSQL_FALSE
+HAVE_MYSQL_TRUE
+LOKI_INSTALL_FALSE
+LOKI_INSTALL_TRUE
+CXXCPP
+CPP
+OTOOL64
+OTOOL
+LIPO
+NMEDIT
+DSYMUTIL
+lt_ECHO
+STRIP
+AR
+OBJDUMP
+LN_S
+NM
+ac_ct_DUMPBIN
+DUMPBIN
+LD
+FGREP
+EGREP
+GREP
+SED
+host_os
+host_vendor
+host_cpu
+host
+build_os
+build_vendor
+build_cpu
+build
+LIBTOOL
+RANLIB
+SET_MAKE
+INSTALL_DATA
+INSTALL_SCRIPT
+INSTALL_PROGRAM
+CFLAGS
+ac_ct_CC
+CC
+MPICC
+OBJEXT
+EXEEXT
+CPPFLAGS
+LDFLAGS
+CXXFLAGS
+ac_ct_CXX
+CXX
+MPICXX
+target_alias
+host_alias
+build_alias
+LIBS
+ECHO_T
+ECHO_N
+ECHO_C
+DEFS
+mandir
+localedir
+libdir
+psdir
+pdfdir
+dvidir
+htmldir
+infodir
+docdir
+oldincludedir
+includedir
+localstatedir
+sharedstatedir
+sysconfdir
+datadir
+datarootdir
+libexecdir
+sbindir
+bindir
+program_transform_name
+prefix
+exec_prefix
+PACKAGE_BUGREPORT
+PACKAGE_STRING
+PACKAGE_VERSION
+PACKAGE_TARNAME
+PACKAGE_NAME
+PATH_SEPARATOR
+SHELL'
+ac_subst_files=''
+ac_user_opts='
+enable_option_checking
+enable_debug
+with_mpi
+enable_shared
+enable_static
+with_pic
+enable_fast_install
+with_gnu_ld
+enable_libtool_lock
+enable_loki
+with_gsl_prefix
+with_gsl_exec_prefix
+enable_gsltest
+with_freetype
+with_freetype_libdir
+with_soci
+with_soci_libdir
+with_soci_sqlite
+with_soci_sqlite_libdir
+with_boost
+with_boost_libdir
+with_boost_system
+with_boost_thread
+with_boost_regex
+with_boost_filesystem
+with_boost_program_options
+with_boost_iostreams
+with_boost_serialization
+enable_dependency_tracking
+'
+ ac_precious_vars='build_alias
+host_alias
+target_alias
+MPICXX
+CXX
+CXXFLAGS
+LDFLAGS
+LIBS
+CPPFLAGS
+CCC
+MPICC
+CC
+CFLAGS
+CPP
+CXXCPP
+PKG_CONFIG
+SQLITE_CFLAGS
+SQLITE_LIBS
+PNG_CFLAGS
+PNG_LIBS
+LIBR_CFLAGS
+LIBR_LIBS'
+
+
+# Initialize some variables set by options.
+ac_init_help=
+ac_init_version=false
+ac_unrecognized_opts=
+ac_unrecognized_sep=
+# The variables have the same names as the options, with
+# dashes changed to underlines.
+cache_file=/dev/null
+exec_prefix=NONE
+no_create=
+no_recursion=
+prefix=NONE
+program_prefix=NONE
+program_suffix=NONE
+program_transform_name=s,x,x,
+silent=
+site=
+srcdir=
+verbose=
+x_includes=NONE
+x_libraries=NONE
+
+# Installation directory options.
+# These are left unexpanded so users can "make install exec_prefix=/foo"
+# and all the variables that are supposed to be based on exec_prefix
+# by default will actually change.
+# Use braces instead of parens because sh, perl, etc. also accept them.
+# (The list follows the same order as the GNU Coding Standards.)
+bindir='${exec_prefix}/bin'
+sbindir='${exec_prefix}/sbin'
+libexecdir='${exec_prefix}/libexec'
+datarootdir='${prefix}/share'
+datadir='${datarootdir}'
+sysconfdir='${prefix}/etc'
+sharedstatedir='${prefix}/com'
+localstatedir='${prefix}/var'
+includedir='${prefix}/include'
+oldincludedir='/usr/include'
+docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
+infodir='${datarootdir}/info'
+htmldir='${docdir}'
+dvidir='${docdir}'
+pdfdir='${docdir}'
+psdir='${docdir}'
+libdir='${exec_prefix}/lib'
+localedir='${datarootdir}/locale'
+mandir='${datarootdir}/man'
+
+ac_prev=
+ac_dashdash=
+for ac_option
+do
+ # If the previous option needs an argument, assign it.
+ if test -n "$ac_prev"; then
+ eval $ac_prev=\$ac_option
+ ac_prev=
+ continue
+ fi
+
+ case $ac_option in
+ *=*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
+ *) ac_optarg=yes ;;
+ esac
+
+ # Accept the important Cygnus configure options, so we can diagnose typos.
+
+ case $ac_dashdash$ac_option in
+ --)
+ ac_dashdash=yes ;;
+
+ -bindir | --bindir | --bindi | --bind | --bin | --bi)
+ ac_prev=bindir ;;
+ -bindir=* | --bindir=* | --bindi=* | --bind=* | --bin=* | --bi=*)
+ bindir=$ac_optarg ;;
+
+ -build | --build | --buil | --bui | --bu)
+ ac_prev=build_alias ;;
+ -build=* | --build=* | --buil=* | --bui=* | --bu=*)
+ build_alias=$ac_optarg ;;
+
+ -cache-file | --cache-file | --cache-fil | --cache-fi \
+ | --cache-f | --cache- | --cache | --cach | --cac | --ca | --c)
+ ac_prev=cache_file ;;
+ -cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \
+ | --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* | --c=*)
+ cache_file=$ac_optarg ;;
+
+ --config-cache | -C)
+ cache_file=config.cache ;;
+
+ -datadir | --datadir | --datadi | --datad)
+ ac_prev=datadir ;;
+ -datadir=* | --datadir=* | --datadi=* | --datad=*)
+ datadir=$ac_optarg ;;
+
+ -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
+ | --dataroo | --dataro | --datar)
+ ac_prev=datarootdir ;;
+ -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
+ | --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
+ datarootdir=$ac_optarg ;;
+
+ -disable-* | --disable-*)
+ ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
+ # Reject names that are not valid shell variable names.
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid feature name: $ac_useropt" >&2
+ { (exit 1); exit 1; }; }
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"enable_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--disable-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
+ esac
+ eval enable_$ac_useropt=no ;;
+
+ -docdir | --docdir | --docdi | --doc | --do)
+ ac_prev=docdir ;;
+ -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
+ docdir=$ac_optarg ;;
+
+ -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
+ ac_prev=dvidir ;;
+ -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
+ dvidir=$ac_optarg ;;
+
+ -enable-* | --enable-*)
+ ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
+ # Reject names that are not valid shell variable names.
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid feature name: $ac_useropt" >&2
+ { (exit 1); exit 1; }; }
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"enable_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--enable-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
+ esac
+ eval enable_$ac_useropt=\$ac_optarg ;;
+
+ -exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
+ | --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
+ | --exec | --exe | --ex)
+ ac_prev=exec_prefix ;;
+ -exec-prefix=* | --exec_prefix=* | --exec-prefix=* | --exec-prefi=* \
+ | --exec-pref=* | --exec-pre=* | --exec-pr=* | --exec-p=* | --exec-=* \
+ | --exec=* | --exe=* | --ex=*)
+ exec_prefix=$ac_optarg ;;
+
+ -gas | --gas | --ga | --g)
+ # Obsolete; use --with-gas.
+ with_gas=yes ;;
+
+ -help | --help | --hel | --he | -h)
+ ac_init_help=long ;;
+ -help=r* | --help=r* | --hel=r* | --he=r* | -hr*)
+ ac_init_help=recursive ;;
+ -help=s* | --help=s* | --hel=s* | --he=s* | -hs*)
+ ac_init_help=short ;;
+
+ -host | --host | --hos | --ho)
+ ac_prev=host_alias ;;
+ -host=* | --host=* | --hos=* | --ho=*)
+ host_alias=$ac_optarg ;;
+
+ -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
+ ac_prev=htmldir ;;
+ -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
+ | --ht=*)
+ htmldir=$ac_optarg ;;
+
+ -includedir | --includedir | --includedi | --included | --include \
+ | --includ | --inclu | --incl | --inc)
+ ac_prev=includedir ;;
+ -includedir=* | --includedir=* | --includedi=* | --included=* | --include=* \
+ | --includ=* | --inclu=* | --incl=* | --inc=*)
+ includedir=$ac_optarg ;;
+
+ -infodir | --infodir | --infodi | --infod | --info | --inf)
+ ac_prev=infodir ;;
+ -infodir=* | --infodir=* | --infodi=* | --infod=* | --info=* | --inf=*)
+ infodir=$ac_optarg ;;
+
+ -libdir | --libdir | --libdi | --libd)
+ ac_prev=libdir ;;
+ -libdir=* | --libdir=* | --libdi=* | --libd=*)
+ libdir=$ac_optarg ;;
+
+ -libexecdir | --libexecdir | --libexecdi | --libexecd | --libexec \
+ | --libexe | --libex | --libe)
+ ac_prev=libexecdir ;;
+ -libexecdir=* | --libexecdir=* | --libexecdi=* | --libexecd=* | --libexec=* \
+ | --libexe=* | --libex=* | --libe=*)
+ libexecdir=$ac_optarg ;;
+
+ -localedir | --localedir | --localedi | --localed | --locale)
+ ac_prev=localedir ;;
+ -localedir=* | --localedir=* | --localedi=* | --localed=* | --locale=*)
+ localedir=$ac_optarg ;;
+
+ -localstatedir | --localstatedir | --localstatedi | --localstated \
+ | --localstate | --localstat | --localsta | --localst | --locals)
+ ac_prev=localstatedir ;;
+ -localstatedir=* | --localstatedir=* | --localstatedi=* | --localstated=* \
+ | --localstate=* | --localstat=* | --localsta=* | --localst=* | --locals=*)
+ localstatedir=$ac_optarg ;;
+
+ -mandir | --mandir | --mandi | --mand | --man | --ma | --m)
+ ac_prev=mandir ;;
+ -mandir=* | --mandir=* | --mandi=* | --mand=* | --man=* | --ma=* | --m=*)
+ mandir=$ac_optarg ;;
+
+ -nfp | --nfp | --nf)
+ # Obsolete; use --without-fp.
+ with_fp=no ;;
+
+ -no-create | --no-create | --no-creat | --no-crea | --no-cre \
+ | --no-cr | --no-c | -n)
+ no_create=yes ;;
+
+ -no-recursion | --no-recursion | --no-recursio | --no-recursi \
+ | --no-recurs | --no-recur | --no-recu | --no-rec | --no-re | --no-r)
+ no_recursion=yes ;;
+
+ -oldincludedir | --oldincludedir | --oldincludedi | --oldincluded \
+ | --oldinclude | --oldinclud | --oldinclu | --oldincl | --oldinc \
+ | --oldin | --oldi | --old | --ol | --o)
+ ac_prev=oldincludedir ;;
+ -oldincludedir=* | --oldincludedir=* | --oldincludedi=* | --oldincluded=* \
+ | --oldinclude=* | --oldinclud=* | --oldinclu=* | --oldincl=* | --oldinc=* \
+ | --oldin=* | --oldi=* | --old=* | --ol=* | --o=*)
+ oldincludedir=$ac_optarg ;;
+
+ -prefix | --prefix | --prefi | --pref | --pre | --pr | --p)
+ ac_prev=prefix ;;
+ -prefix=* | --prefix=* | --prefi=* | --pref=* | --pre=* | --pr=* | --p=*)
+ prefix=$ac_optarg ;;
+
+ -program-prefix | --program-prefix | --program-prefi | --program-pref \
+ | --program-pre | --program-pr | --program-p)
+ ac_prev=program_prefix ;;
+ -program-prefix=* | --program-prefix=* | --program-prefi=* \
+ | --program-pref=* | --program-pre=* | --program-pr=* | --program-p=*)
+ program_prefix=$ac_optarg ;;
+
+ -program-suffix | --program-suffix | --program-suffi | --program-suff \
+ | --program-suf | --program-su | --program-s)
+ ac_prev=program_suffix ;;
+ -program-suffix=* | --program-suffix=* | --program-suffi=* \
+ | --program-suff=* | --program-suf=* | --program-su=* | --program-s=*)
+ program_suffix=$ac_optarg ;;
+
+ -program-transform-name | --program-transform-name \
+ | --program-transform-nam | --program-transform-na \
+ | --program-transform-n | --program-transform- \
+ | --program-transform | --program-transfor \
+ | --program-transfo | --program-transf \
+ | --program-trans | --program-tran \
+ | --progr-tra | --program-tr | --program-t)
+ ac_prev=program_transform_name ;;
+ -program-transform-name=* | --program-transform-name=* \
+ | --program-transform-nam=* | --program-transform-na=* \
+ | --program-transform-n=* | --program-transform-=* \
+ | --program-transform=* | --program-transfor=* \
+ | --program-transfo=* | --program-transf=* \
+ | --program-trans=* | --program-tran=* \
+ | --progr-tra=* | --program-tr=* | --program-t=*)
+ program_transform_name=$ac_optarg ;;
+
+ -pdfdir | --pdfdir | --pdfdi | --pdfd | --pdf | --pd)
+ ac_prev=pdfdir ;;
+ -pdfdir=* | --pdfdir=* | --pdfdi=* | --pdfd=* | --pdf=* | --pd=*)
+ pdfdir=$ac_optarg ;;
+
+ -psdir | --psdir | --psdi | --psd | --ps)
+ ac_prev=psdir ;;
+ -psdir=* | --psdir=* | --psdi=* | --psd=* | --ps=*)
+ psdir=$ac_optarg ;;
+
+ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
+ | -silent | --silent | --silen | --sile | --sil)
+ silent=yes ;;
+
+ -sbindir | --sbindir | --sbindi | --sbind | --sbin | --sbi | --sb)
+ ac_prev=sbindir ;;
+ -sbindir=* | --sbindir=* | --sbindi=* | --sbind=* | --sbin=* \
+ | --sbi=* | --sb=*)
+ sbindir=$ac_optarg ;;
+
+ -sharedstatedir | --sharedstatedir | --sharedstatedi \
+ | --sharedstated | --sharedstate | --sharedstat | --sharedsta \
+ | --sharedst | --shareds | --shared | --share | --shar \
+ | --sha | --sh)
+ ac_prev=sharedstatedir ;;
+ -sharedstatedir=* | --sharedstatedir=* | --sharedstatedi=* \
+ | --sharedstated=* | --sharedstate=* | --sharedstat=* | --sharedsta=* \
+ | --sharedst=* | --shareds=* | --shared=* | --share=* | --shar=* \
+ | --sha=* | --sh=*)
+ sharedstatedir=$ac_optarg ;;
+
+ -site | --site | --sit)
+ ac_prev=site ;;
+ -site=* | --site=* | --sit=*)
+ site=$ac_optarg ;;
+
+ -srcdir | --srcdir | --srcdi | --srcd | --src | --sr)
+ ac_prev=srcdir ;;
+ -srcdir=* | --srcdir=* | --srcdi=* | --srcd=* | --src=* | --sr=*)
+ srcdir=$ac_optarg ;;
+
+ -sysconfdir | --sysconfdir | --sysconfdi | --sysconfd | --sysconf \
+ | --syscon | --sysco | --sysc | --sys | --sy)
+ ac_prev=sysconfdir ;;
+ -sysconfdir=* | --sysconfdir=* | --sysconfdi=* | --sysconfd=* | --sysconf=* \
+ | --syscon=* | --sysco=* | --sysc=* | --sys=* | --sy=*)
+ sysconfdir=$ac_optarg ;;
+
+ -target | --target | --targe | --targ | --tar | --ta | --t)
+ ac_prev=target_alias ;;
+ -target=* | --target=* | --targe=* | --targ=* | --tar=* | --ta=* | --t=*)
+ target_alias=$ac_optarg ;;
+
+ -v | -verbose | --verbose | --verbos | --verbo | --verb)
+ verbose=yes ;;
+
+ -version | --version | --versio | --versi | --vers | -V)
+ ac_init_version=: ;;
+
+ -with-* | --with-*)
+ ac_useropt=`expr "x$ac_option" : 'x-*with-\([^=]*\)'`
+ # Reject names that are not valid shell variable names.
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid package name: $ac_useropt" >&2
+ { (exit 1); exit 1; }; }
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"with_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--with-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
+ esac
+ eval with_$ac_useropt=\$ac_optarg ;;
+
+ -without-* | --without-*)
+ ac_useropt=`expr "x$ac_option" : 'x-*without-\(.*\)'`
+ # Reject names that are not valid shell variable names.
+ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid package name: $ac_useropt" >&2
+ { (exit 1); exit 1; }; }
+ ac_useropt_orig=$ac_useropt
+ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
+ case $ac_user_opts in
+ *"
+"with_$ac_useropt"
+"*) ;;
+ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--without-$ac_useropt_orig"
+ ac_unrecognized_sep=', ';;
+ esac
+ eval with_$ac_useropt=no ;;
+
+ --x)
+ # Obsolete; use --with-x.
+ with_x=yes ;;
+
+ -x-includes | --x-includes | --x-include | --x-includ | --x-inclu \
+ | --x-incl | --x-inc | --x-in | --x-i)
+ ac_prev=x_includes ;;
+ -x-includes=* | --x-includes=* | --x-include=* | --x-includ=* | --x-inclu=* \
+ | --x-incl=* | --x-inc=* | --x-in=* | --x-i=*)
+ x_includes=$ac_optarg ;;
+
+ -x-libraries | --x-libraries | --x-librarie | --x-librari \
+ | --x-librar | --x-libra | --x-libr | --x-lib | --x-li | --x-l)
+ ac_prev=x_libraries ;;
+ -x-libraries=* | --x-libraries=* | --x-librarie=* | --x-librari=* \
+ | --x-librar=* | --x-libra=* | --x-libr=* | --x-lib=* | --x-li=* | --x-l=*)
+ x_libraries=$ac_optarg ;;
+
+ -*) { $as_echo "$as_me: error: unrecognized option: $ac_option
+Try \`$0 --help' for more information." >&2
+ { (exit 1); exit 1; }; }
+ ;;
+
+ *=*)
+ ac_envvar=`expr "x$ac_option" : 'x\([^=]*\)='`
+ # Reject names that are not valid shell variable names.
+ expr "x$ac_envvar" : ".*[^_$as_cr_alnum]" >/dev/null &&
+ { $as_echo "$as_me: error: invalid variable name: $ac_envvar" >&2
+ { (exit 1); exit 1; }; }
+ eval $ac_envvar=\$ac_optarg
+ export $ac_envvar ;;
+
+ *)
+ # FIXME: should be removed in autoconf 3.0.
+ $as_echo "$as_me: WARNING: you should use --build, --host, --target" >&2
+ expr "x$ac_option" : ".*[^-._$as_cr_alnum]" >/dev/null &&
+ $as_echo "$as_me: WARNING: invalid host type: $ac_option" >&2
+ : ${build_alias=$ac_option} ${host_alias=$ac_option} ${target_alias=$ac_option}
+ ;;
+
+ esac
+done
+
+if test -n "$ac_prev"; then
+ ac_option=--`echo $ac_prev | sed 's/_/-/g'`
+ { $as_echo "$as_me: error: missing argument to $ac_option" >&2
+ { (exit 1); exit 1; }; }
+fi
+
+if test -n "$ac_unrecognized_opts"; then
+ case $enable_option_checking in
+ no) ;;
+ fatal) { $as_echo "$as_me: error: unrecognized options: $ac_unrecognized_opts" >&2
+ { (exit 1); exit 1; }; } ;;
+ *) $as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2 ;;
+ esac
+fi
+
+# Check all directory arguments for consistency.
+for ac_var in exec_prefix prefix bindir sbindir libexecdir datarootdir \
+ datadir sysconfdir sharedstatedir localstatedir includedir \
+ oldincludedir docdir infodir htmldir dvidir pdfdir psdir \
+ libdir localedir mandir
+do
+ eval ac_val=\$$ac_var
+ # Remove trailing slashes.
+ case $ac_val in
+ */ )
+ ac_val=`expr "X$ac_val" : 'X\(.*[^/]\)' \| "X$ac_val" : 'X\(.*\)'`
+ eval $ac_var=\$ac_val;;
+ esac
+ # Be sure to have absolute directory names.
+ case $ac_val in
+ [\\/$]* | ?:[\\/]* ) continue;;
+ NONE | '' ) case $ac_var in *prefix ) continue;; esac;;
+ esac
+ { $as_echo "$as_me: error: expected an absolute directory name for --$ac_var: $ac_val" >&2
+ { (exit 1); exit 1; }; }
+done
+
+# There might be people who depend on the old broken behavior: `$host'
+# used to hold the argument of --host etc.
+# FIXME: To remove some day.
+build=$build_alias
+host=$host_alias
+target=$target_alias
+
+# FIXME: To remove some day.
+if test "x$host_alias" != x; then
+ if test "x$build_alias" = x; then
+ cross_compiling=maybe
+ $as_echo "$as_me: WARNING: If you wanted to set the --build type, don't use --host.
+ If a cross compiler is detected then cross compile mode will be used." >&2
+ elif test "x$build_alias" != "x$host_alias"; then
+ cross_compiling=yes
+ fi
+fi
+
+ac_tool_prefix=
+test -n "$host_alias" && ac_tool_prefix=$host_alias-
+
+test "$silent" = yes && exec 6>/dev/null
+
+
+ac_pwd=`pwd` && test -n "$ac_pwd" &&
+ac_ls_di=`ls -di .` &&
+ac_pwd_ls_di=`cd "$ac_pwd" && ls -di .` ||
+ { $as_echo "$as_me: error: working directory cannot be determined" >&2
+ { (exit 1); exit 1; }; }
+test "X$ac_ls_di" = "X$ac_pwd_ls_di" ||
+ { $as_echo "$as_me: error: pwd does not report name of working directory" >&2
+ { (exit 1); exit 1; }; }
+
+
+# Find the source files, if location was not specified.
+if test -z "$srcdir"; then
+ ac_srcdir_defaulted=yes
+ # Try the directory containing this script, then the parent directory.
+ ac_confdir=`$as_dirname -- "$as_myself" ||
+$as_expr X"$as_myself" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$as_myself" : 'X\(//\)[^/]' \| \
+ X"$as_myself" : 'X\(//\)$' \| \
+ X"$as_myself" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_myself" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ srcdir=$ac_confdir
+ if test ! -r "$srcdir/$ac_unique_file"; then
+ srcdir=..
+ fi
+else
+ ac_srcdir_defaulted=no
+fi
+if test ! -r "$srcdir/$ac_unique_file"; then
+ test "$ac_srcdir_defaulted" = yes && srcdir="$ac_confdir or .."
+ { $as_echo "$as_me: error: cannot find sources ($ac_unique_file) in $srcdir" >&2
+ { (exit 1); exit 1; }; }
+fi
+ac_msg="sources are in $srcdir, but \`cd $srcdir' does not work"
+ac_abs_confdir=`(
+ cd "$srcdir" && test -r "./$ac_unique_file" || { $as_echo "$as_me: error: $ac_msg" >&2
+ { (exit 1); exit 1; }; }
+ pwd)`
+# When building in place, set srcdir=.
+if test "$ac_abs_confdir" = "$ac_pwd"; then
+ srcdir=.
+fi
+# Remove unnecessary trailing slashes from srcdir.
+# Double slashes in file names in object file debugging info
+# mess up M-x gdb in Emacs.
+case $srcdir in
+*/) srcdir=`expr "X$srcdir" : 'X\(.*[^/]\)' \| "X$srcdir" : 'X\(.*\)'`;;
+esac
+for ac_var in $ac_precious_vars; do
+ eval ac_env_${ac_var}_set=\${${ac_var}+set}
+ eval ac_env_${ac_var}_value=\$${ac_var}
+ eval ac_cv_env_${ac_var}_set=\${${ac_var}+set}
+ eval ac_cv_env_${ac_var}_value=\$${ac_var}
+done
+
+#
+# Report the --help message.
+#
+if test "$ac_init_help" = "long"; then
+ # Omit some internal or obsolete options to make the list less imposing.
+ # This message is too long to be a string in the A/UX 3.1 sh.
+ cat <<_ACEOF
+\`configure' configures PLATO 2.0.0 to adapt to many kinds of systems.
+
+Usage: $0 [OPTION]... [VAR=VALUE]...
+
+To assign environment variables (e.g., CC, CFLAGS...), specify them as
+VAR=VALUE. See below for descriptions of some of the useful variables.
+
+Defaults for the options are specified in brackets.
+
+Configuration:
+ -h, --help display this help and exit
+ --help=short display options specific to this package
+ --help=recursive display the short help of all the included packages
+ -V, --version display version information and exit
+ -q, --quiet, --silent do not print \`checking...' messages
+ --cache-file=FILE cache test results in FILE [disabled]
+ -C, --config-cache alias for \`--cache-file=config.cache'
+ -n, --no-create do not create output files
+ --srcdir=DIR find the sources in DIR [configure dir or \`..']
+
+Installation directories:
+ --prefix=PREFIX install architecture-independent files in PREFIX
+ [$ac_default_prefix]
+ --exec-prefix=EPREFIX install architecture-dependent files in EPREFIX
+ [PREFIX]
+
+By default, \`make install' will install all the files in
+\`$ac_default_prefix/bin', \`$ac_default_prefix/lib' etc. You can specify
+an installation prefix other than \`$ac_default_prefix' using \`--prefix',
+for instance \`--prefix=\$HOME'.
+
+For better control, use the options below.
+
+Fine tuning of the installation directories:
+ --bindir=DIR user executables [EPREFIX/bin]
+ --sbindir=DIR system admin executables [EPREFIX/sbin]
+ --libexecdir=DIR program executables [EPREFIX/libexec]
+ --sysconfdir=DIR read-only single-machine data [PREFIX/etc]
+ --sharedstatedir=DIR modifiable architecture-independent data [PREFIX/com]
+ --localstatedir=DIR modifiable single-machine data [PREFIX/var]
+ --libdir=DIR object code libraries [EPREFIX/lib]
+ --includedir=DIR C header files [PREFIX/include]
+ --oldincludedir=DIR C header files for non-gcc [/usr/include]
+ --datarootdir=DIR read-only arch.-independent data root [PREFIX/share]
+ --datadir=DIR read-only architecture-independent data [DATAROOTDIR]
+ --infodir=DIR info documentation [DATAROOTDIR/info]
+ --localedir=DIR locale-dependent data [DATAROOTDIR/locale]
+ --mandir=DIR man documentation [DATAROOTDIR/man]
+ --docdir=DIR documentation root [DATAROOTDIR/doc/plato]
+ --htmldir=DIR html documentation [DOCDIR]
+ --dvidir=DIR dvi documentation [DOCDIR]
+ --pdfdir=DIR pdf documentation [DOCDIR]
+ --psdir=DIR ps documentation [DOCDIR]
+_ACEOF
+
+ cat <<\_ACEOF
+
+Program names:
+ --program-prefix=PREFIX prepend PREFIX to installed program names
+ --program-suffix=SUFFIX append SUFFIX to installed program names
+ --program-transform-name=PROGRAM run sed PROGRAM on installed program names
+
+System types:
+ --build=BUILD configure for building on BUILD [guessed]
+ --host=HOST cross-compile to build programs to run on HOST [BUILD]
+_ACEOF
+fi
+
+if test -n "$ac_init_help"; then
+ case $ac_init_help in
+ short | recursive ) echo "Configuration of PLATO 2.0.0:";;
+ esac
+ cat <<\_ACEOF
+
+Optional Features:
+ --disable-option-checking ignore unrecognized --enable/--with options
+ --disable-FEATURE do not include FEATURE (same as --enable-FEATURE=no)
+ --enable-FEATURE[=ARG] include FEATURE [ARG=yes]
+ --enable-debug[=no] compile with debugging; one of yes/info/profile/no
+ --enable-shared[=PKGS] build shared libraries [default=yes]
+ --enable-static[=PKGS] build static libraries [default=yes]
+ --enable-fast-install[=PKGS]
+ optimize for fast installation [default=yes]
+ --disable-libtool-lock avoid locking (might break parallel builds)
+ --enable-loki[=yes] Download and install the LOKI databse; one of yes/no
+ --disable-gsltest Do not try to compile and run a test GSL program
+ --disable-dependency-tracking speeds up one-time build
+ --enable-dependency-tracking do not reject slow dependency extractors
+
+Optional Packages:
+ --with-PACKAGE[=ARG] use PACKAGE [ARG=yes]
+ --without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no)
+ --with-mpi compile with MPI (parallelization) support. If none
+ is found, MPI is not used. Default: auto
+ --with-pic try to use only PIC/non-PIC objects [default=use
+ both]
+ --with-gnu-ld assume the C compiler uses GNU ld [default=no]
+ --with-gsl-prefix=PFX Prefix where GSL is installed (optional)
+ --with-gsl-exec-prefix=PFX Exec prefix where GSL is installed (optional)
+ --with-freetype[=ARG] use Boost library from a standard location
+ (ARG=yes), from the specified location (ARG=<path>),
+ or disable it (ARG=no) [ARG=yes]
+ --with-freetype-libdir=LIB_DIR
+ Force given directory for freetype libraries. Note
+ that this will override library path detection, so
+ use this parameter only if default library detection
+ fails and you know exactly where your freetype
+ libraries are located.
+ --with-soci[=ARG] use Boost library from a standard location
+ (ARG=yes), from the specified location (ARG=<path>),
+ or disable it (ARG=no) [ARG=yes]
+ --with-soci-libdir=LIB_DIR
+ Force given directory for soci libraries. Note that
+ this will override library path detection, so use
+ this parameter only if default library detection
+ fails and you know exactly where your soci libraries
+ are located.
+ --with-soci-sqlite[=ARG]
+ use SOCI SQLite backend from a standard location
+ (ARG=yes), from the specified location (ARG=<path>),
+ or disable it (ARG=no) [ARG=yes]
+ --with-soci-sqlite-libdir=LIB_DIR
+ Force given directory for soci libraries. Note that
+ this will override library path detection, so use
+ this parameter only if default library detection
+ fails and you know exactly where your soci libraries
+ are located.
+ --with-boost[=ARG] use Boost library from a standard location
+ (ARG=yes), from the specified location (ARG=<path>),
+ or disable it (ARG=no) [ARG=yes]
+ --with-boost-libdir=LIB_DIR
+ Force given directory for boost libraries. Note that
+ this will override library path detection, so use
+ this parameter only if default library detection
+ fails and you know exactly where your boost
+ libraries are located.
+ --with-boost-system[=special-lib]
+ use the system library from boost - it is possible
+ to specify a certain library for the linker e.g.
+ --with-boost-system=system-gcc-mt
+ --with-boost-thread[=special-lib]
+ use the thread library from boost - it is possible
+ to specify a certain library for the linker e.g.
+ --with-boost-thread=thread-gcc-mt
+ --with-boost-regex[=special-lib]
+ use the regex library from boost - it is possible to
+ specify a certain library for the linker e.g.
+ --with-boost-regex=regex-gcc-mt
+ --with-boost-filesystem[=special-lib]
+ use the filesystem library from boost - it is
+ possible to specify a certain library for the linker
+ e.g. --with-boost-filesystem=filesystem-gcc-mt
+ --with-boost-program-options[=special-lib]
+ use the program_options library from boost - it is
+ possible to specify a certain library for the linker
+ e.g.
+ --with-boost-program-options=program_options-gcc-mt
+ --with-boost-iostreams[=special-lib]
+ use the iostreams library from boost - it is
+ possible to specify a certain library for the linker
+ e.g. --with-boost-iostreams=iostreams-gcc-mt
+ --with-boost-serialization[=special-lib]
+ use the serialization library from boost - it is
+ possible to specify a certain library for the linker
+ e.g. --with-boost-serialization=serialization-gcc-mt
+
+Some influential environment variables:
+ MPICXX MPI C++ compiler command
+ CXX C++ compiler command
+ CXXFLAGS C++ compiler flags
+ LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a
+ nonstandard directory <lib dir>
+ LIBS libraries to pass to the linker, e.g. -l<library>
+ CPPFLAGS C/C++/Objective C preprocessor flags, e.g. -I<include dir> if
+ you have headers in a nonstandard directory <include dir>
+ MPICC MPI C compiler command
+ CC C compiler command
+ CFLAGS C compiler flags
+ CPP C preprocessor
+ CXXCPP C++ preprocessor
+ PKG_CONFIG path to pkg-config utility
+ SQLITE_CFLAGS
+ C compiler flags for SQLITE, overriding pkg-config
+ SQLITE_LIBS linker flags for SQLITE, overriding pkg-config
+ PNG_CFLAGS C compiler flags for PNG, overriding pkg-config
+ PNG_LIBS linker flags for PNG, overriding pkg-config
+ LIBR_CFLAGS C compiler flags for LIBR, overriding pkg-config
+ LIBR_LIBS linker flags for LIBR, overriding pkg-config
+
+Use these variables to override the choices made by `configure' or to help
+it to find libraries and programs with nonstandard names/locations.
+
+Report bugs to <software at ritchielab.psu.edu>.
+_ACEOF
+ac_status=$?
+fi
+
+if test "$ac_init_help" = "recursive"; then
+ # If there are subdirs, report their specific --help.
+ for ac_dir in : $ac_subdirs_all; do test "x$ac_dir" = x: && continue
+ test -d "$ac_dir" ||
+ { cd "$srcdir" && ac_pwd=`pwd` && srcdir=. && test -d "$ac_dir"; } ||
+ continue
+ ac_builddir=.
+
+case "$ac_dir" in
+.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
+*)
+ ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
+ # A ".." for each directory in $ac_dir_suffix.
+ ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
+ case $ac_top_builddir_sub in
+ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
+ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
+ esac ;;
+esac
+ac_abs_top_builddir=$ac_pwd
+ac_abs_builddir=$ac_pwd$ac_dir_suffix
+# for backward compatibility:
+ac_top_builddir=$ac_top_build_prefix
+
+case $srcdir in
+ .) # We are building in place.
+ ac_srcdir=.
+ ac_top_srcdir=$ac_top_builddir_sub
+ ac_abs_top_srcdir=$ac_pwd ;;
+ [\\/]* | ?:[\\/]* ) # Absolute name.
+ ac_srcdir=$srcdir$ac_dir_suffix;
+ ac_top_srcdir=$srcdir
+ ac_abs_top_srcdir=$srcdir ;;
+ *) # Relative name.
+ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
+ ac_top_srcdir=$ac_top_build_prefix$srcdir
+ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
+esac
+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
+
+ cd "$ac_dir" || { ac_status=$?; continue; }
+ # Check for guested configure.
+ if test -f "$ac_srcdir/configure.gnu"; then
+ echo &&
+ $SHELL "$ac_srcdir/configure.gnu" --help=recursive
+ elif test -f "$ac_srcdir/configure"; then
+ echo &&
+ $SHELL "$ac_srcdir/configure" --help=recursive
+ else
+ $as_echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2
+ fi || ac_status=$?
+ cd "$ac_pwd" || { ac_status=$?; break; }
+ done
+fi
+
+test -n "$ac_init_help" && exit $ac_status
+if $ac_init_version; then
+ cat <<\_ACEOF
+PLATO configure 2.0.0
+generated by GNU Autoconf 2.63
+
+Copyright (C) 1992, 1993, 1994, 1995, 1996, 1998, 1999, 2000, 2001,
+2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation, Inc.
+This configure script is free software; the Free Software Foundation
+gives unlimited permission to copy, distribute and modify it.
+_ACEOF
+ exit
+fi
+cat >config.log <<_ACEOF
+This file contains any messages produced by compilers while
+running configure, to aid debugging if configure makes a mistake.
+
+It was created by PLATO $as_me 2.0.0, which was
+generated by GNU Autoconf 2.63. Invocation command line was
+
+ $ $0 $@
+
+_ACEOF
+exec 5>>config.log
+{
+cat <<_ASUNAME
+## --------- ##
+## Platform. ##
+## --------- ##
+
+hostname = `(hostname || uname -n) 2>/dev/null | sed 1q`
+uname -m = `(uname -m) 2>/dev/null || echo unknown`
+uname -r = `(uname -r) 2>/dev/null || echo unknown`
+uname -s = `(uname -s) 2>/dev/null || echo unknown`
+uname -v = `(uname -v) 2>/dev/null || echo unknown`
+
+/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown`
+/bin/uname -X = `(/bin/uname -X) 2>/dev/null || echo unknown`
+
+/bin/arch = `(/bin/arch) 2>/dev/null || echo unknown`
+/usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown`
+/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
+/usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown`
+/bin/machine = `(/bin/machine) 2>/dev/null || echo unknown`
+/usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown`
+/bin/universe = `(/bin/universe) 2>/dev/null || echo unknown`
+
+_ASUNAME
+
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ $as_echo "PATH: $as_dir"
+done
+IFS=$as_save_IFS
+
+} >&5
+
+cat >&5 <<_ACEOF
+
+
+## ----------- ##
+## Core tests. ##
+## ----------- ##
+
+_ACEOF
+
+
+# Keep a trace of the command line.
+# Strip out --no-create and --no-recursion so they do not pile up.
+# Strip out --silent because we don't want to record it for future runs.
+# Also quote any args containing shell meta-characters.
+# Make two passes to allow for proper duplicate-argument suppression.
+ac_configure_args=
+ac_configure_args0=
+ac_configure_args1=
+ac_must_keep_next=false
+for ac_pass in 1 2
+do
+ for ac_arg
+ do
+ case $ac_arg in
+ -no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;;
+ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
+ | -silent | --silent | --silen | --sile | --sil)
+ continue ;;
+ *\'*)
+ ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ esac
+ case $ac_pass in
+ 1) ac_configure_args0="$ac_configure_args0 '$ac_arg'" ;;
+ 2)
+ ac_configure_args1="$ac_configure_args1 '$ac_arg'"
+ if test $ac_must_keep_next = true; then
+ ac_must_keep_next=false # Got value, back to normal.
+ else
+ case $ac_arg in
+ *=* | --config-cache | -C | -disable-* | --disable-* \
+ | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
+ | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
+ | -with-* | --with-* | -without-* | --without-* | --x)
+ case "$ac_configure_args0 " in
+ "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
+ esac
+ ;;
+ -* ) ac_must_keep_next=true ;;
+ esac
+ fi
+ ac_configure_args="$ac_configure_args '$ac_arg'"
+ ;;
+ esac
+ done
+done
+$as_unset ac_configure_args0 || test "${ac_configure_args0+set}" != set || { ac_configure_args0=; export ac_configure_args0; }
+$as_unset ac_configure_args1 || test "${ac_configure_args1+set}" != set || { ac_configure_args1=; export ac_configure_args1; }
+
+# When interrupted or exit'd, cleanup temporary files, and complete
+# config.log. We remove comments because anyway the quotes in there
+# would cause problems or look ugly.
+# WARNING: Use '\'' to represent an apostrophe within the trap.
+# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
+trap 'exit_status=$?
+ # Save into config.log some information that might help in debugging.
+ {
+ echo
+
+ cat <<\_ASBOX
+## ---------------- ##
+## Cache variables. ##
+## ---------------- ##
+_ASBOX
+ echo
+ # The following way of writing the cache mishandles newlines in values,
+(
+ for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do
+ eval ac_val=\$$ac_var
+ case $ac_val in #(
+ *${as_nl}*)
+ case $ac_var in #(
+ *_cv_*) { $as_echo "$as_me:$LINENO: WARNING: cache variable $ac_var contains a newline" >&5
+$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
+ esac
+ case $ac_var in #(
+ _ | IFS | as_nl) ;; #(
+ BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
+ *) $as_unset $ac_var ;;
+ esac ;;
+ esac
+ done
+ (set) 2>&1 |
+ case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
+ *${as_nl}ac_space=\ *)
+ sed -n \
+ "s/'\''/'\''\\\\'\'''\''/g;
+ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
+ ;; #(
+ *)
+ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
+ ;;
+ esac |
+ sort
+)
+ echo
+
+ cat <<\_ASBOX
+## ----------------- ##
+## Output variables. ##
+## ----------------- ##
+_ASBOX
+ echo
+ for ac_var in $ac_subst_vars
+ do
+ eval ac_val=\$$ac_var
+ case $ac_val in
+ *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
+ esac
+ $as_echo "$ac_var='\''$ac_val'\''"
+ done | sort
+ echo
+
+ if test -n "$ac_subst_files"; then
+ cat <<\_ASBOX
+## ------------------- ##
+## File substitutions. ##
+## ------------------- ##
+_ASBOX
+ echo
+ for ac_var in $ac_subst_files
+ do
+ eval ac_val=\$$ac_var
+ case $ac_val in
+ *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
+ esac
+ $as_echo "$ac_var='\''$ac_val'\''"
+ done | sort
+ echo
+ fi
+
+ if test -s confdefs.h; then
+ cat <<\_ASBOX
+## ----------- ##
+## confdefs.h. ##
+## ----------- ##
+_ASBOX
+ echo
+ cat confdefs.h
+ echo
+ fi
+ test "$ac_signal" != 0 &&
+ $as_echo "$as_me: caught signal $ac_signal"
+ $as_echo "$as_me: exit $exit_status"
+ } >&5
+ rm -f core *.core core.conftest.* &&
+ rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
+ exit $exit_status
+' 0
+for ac_signal in 1 2 13 15; do
+ trap 'ac_signal='$ac_signal'; { (exit 1); exit 1; }' $ac_signal
+done
+ac_signal=0
+
+# confdefs.h avoids OS command line length limits that DEFS can exceed.
+rm -f -r conftest* confdefs.h
+
+# Predefined preprocessor variables.
+
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_NAME "$PACKAGE_NAME"
+_ACEOF
+
+
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_TARNAME "$PACKAGE_TARNAME"
+_ACEOF
+
+
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_VERSION "$PACKAGE_VERSION"
+_ACEOF
+
+
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_STRING "$PACKAGE_STRING"
+_ACEOF
+
+
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE_BUGREPORT "$PACKAGE_BUGREPORT"
+_ACEOF
+
+
+# Let the site file select an alternate cache file if it wants to.
+# Prefer an explicitly selected file to automatically selected ones.
+ac_site_file1=NONE
+ac_site_file2=NONE
+if test -n "$CONFIG_SITE"; then
+ ac_site_file1=$CONFIG_SITE
+elif test "x$prefix" != xNONE; then
+ ac_site_file1=$prefix/share/config.site
+ ac_site_file2=$prefix/etc/config.site
+else
+ ac_site_file1=$ac_default_prefix/share/config.site
+ ac_site_file2=$ac_default_prefix/etc/config.site
+fi
+for ac_site_file in "$ac_site_file1" "$ac_site_file2"
+do
+ test "x$ac_site_file" = xNONE && continue
+ if test -r "$ac_site_file"; then
+ { $as_echo "$as_me:$LINENO: loading site script $ac_site_file" >&5
+$as_echo "$as_me: loading site script $ac_site_file" >&6;}
+ sed 's/^/| /' "$ac_site_file" >&5
+ . "$ac_site_file"
+ fi
+done
+
+if test -r "$cache_file"; then
+ # Some versions of bash will fail to source /dev/null (special
+ # files actually), so we avoid doing that.
+ if test -f "$cache_file"; then
+ { $as_echo "$as_me:$LINENO: loading cache $cache_file" >&5
+$as_echo "$as_me: loading cache $cache_file" >&6;}
+ case $cache_file in
+ [\\/]* | ?:[\\/]* ) . "$cache_file";;
+ *) . "./$cache_file";;
+ esac
+ fi
+else
+ { $as_echo "$as_me:$LINENO: creating cache $cache_file" >&5
+$as_echo "$as_me: creating cache $cache_file" >&6;}
+ >$cache_file
+fi
+
+ac_header_list="$ac_header_list sys/time.h"
+ac_header_list="$ac_header_list unistd.h"
+ac_func_list="$ac_func_list alarm"
+# Check that the precious variables saved in the cache have kept the same
+# value.
+ac_cache_corrupted=false
+for ac_var in $ac_precious_vars; do
+ eval ac_old_set=\$ac_cv_env_${ac_var}_set
+ eval ac_new_set=\$ac_env_${ac_var}_set
+ eval ac_old_val=\$ac_cv_env_${ac_var}_value
+ eval ac_new_val=\$ac_env_${ac_var}_value
+ case $ac_old_set,$ac_new_set in
+ set,)
+ { $as_echo "$as_me:$LINENO: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
+$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
+ ac_cache_corrupted=: ;;
+ ,set)
+ { $as_echo "$as_me:$LINENO: error: \`$ac_var' was not set in the previous run" >&5
+$as_echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
+ ac_cache_corrupted=: ;;
+ ,);;
+ *)
+ if test "x$ac_old_val" != "x$ac_new_val"; then
+ # differences in whitespace do not lead to failure.
+ ac_old_val_w=`echo x $ac_old_val`
+ ac_new_val_w=`echo x $ac_new_val`
+ if test "$ac_old_val_w" != "$ac_new_val_w"; then
+ { $as_echo "$as_me:$LINENO: error: \`$ac_var' has changed since the previous run:" >&5
+$as_echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
+ ac_cache_corrupted=:
+ else
+ { $as_echo "$as_me:$LINENO: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&5
+$as_echo "$as_me: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&2;}
+ eval $ac_var=\$ac_old_val
+ fi
+ { $as_echo "$as_me:$LINENO: former value: \`$ac_old_val'" >&5
+$as_echo "$as_me: former value: \`$ac_old_val'" >&2;}
+ { $as_echo "$as_me:$LINENO: current value: \`$ac_new_val'" >&5
+$as_echo "$as_me: current value: \`$ac_new_val'" >&2;}
+ fi;;
+ esac
+ # Pass precious variables to config.status.
+ if test "$ac_new_set" = set; then
+ case $ac_new_val in
+ *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
+ *) ac_arg=$ac_var=$ac_new_val ;;
+ esac
+ case " $ac_configure_args " in
+ *" '$ac_arg' "*) ;; # Avoid dups. Use of quotes ensures accuracy.
+ *) ac_configure_args="$ac_configure_args '$ac_arg'" ;;
+ esac
+ fi
+done
+if $ac_cache_corrupted; then
+ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+ { $as_echo "$as_me:$LINENO: error: changes in the environment can compromise the build" >&5
+$as_echo "$as_me: error: changes in the environment can compromise the build" >&2;}
+ { { $as_echo "$as_me:$LINENO: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&5
+$as_echo "$as_me: error: run \`make distclean' and/or \`rm $cache_file' and start over" >&2;}
+ { (exit 1); exit 1; }; }
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+
+# Checks for --enable-debug added
+
+
+ { $as_echo "$as_me:$LINENO: checking whether to enable debugging" >&5
+$as_echo_n "checking whether to enable debugging... " >&6; }
+
+ # Check whether --enable-debug was given.
+if test "${enable_debug+set}" = set; then
+ enableval=$enable_debug;
+else
+ enable_debug=no
+fi
+
+ if test "x$enable_debug" = "xyes" || test "x$enable_debug" = "x"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ CFLAGS="${CFLAGS} -g -pg -Wall"
+ CXXFLAGS="${CXXFLAGS} -g -O0 -Wall"
+ FFLAGS="${FFLAGS} -g -O0 -Wall"
+ FCFLAGS="${FCFLAGS} -g -O0 -Wall"
+ OBJCFLAGS="${OBJCFLAGS} -g -O0 -Wall"
+ else
+ if test "x$enable_debug" = "xinfo"; then
+ { $as_echo "$as_me:$LINENO: result: info" >&5
+$as_echo "info" >&6; }
+ CFLAGS="${CFLAGS} -g"
+ CXXFLAGS="${CXXFLAGS} -g"
+ FFLAGS="${FFLAGS} -g"
+ FCFLAGS="${FCFLAGS} -g"
+ OBJCFLAGS="${OBJCFLAGS} -g"
+ elif test "x$enable_debug" = "xprofile"; then
+ { $as_echo "$as_me:$LINENO: result: profile" >&5
+$as_echo "profile" >&6; }
+ CFLAGS="${CFLAGS} -g -pg"
+ CXXFLAGS="${CXXFLAGS} -g -pg"
+ FFLAGS="${FFLAGS} -g -pg"
+ FCFLAGS="${FCFLAGS} -g -pg"
+ OBJCFLAGS="${OBJCFLAGS} -g -pg"
+ LDFLAGS="${LDFLAGS} -pg"
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ if test "x${CFLAGS+set}" != "xset"; then
+ CFLAGS="-O2 -DGSL_RANGE_CHECK_OFF -DNDEBUG"
+ fi
+ if test "x${CXXFLAGS+set}" != "xset"; then
+ CXXFLAGS="-O2 -DGSL_RANGE_CHECK_OFF -DNDEBUG"
+ fi
+ if test "x${FFLAGS+set}" != "xset"; then
+ FFLAGS="-O2"
+ fi
+ if test "x${FCFLAGS+set}" != "xset"; then
+ FCFLAGS="-O2"
+ fi
+ if test "x${OBJCFLAGS+set}" != "xset"; then
+ OBJCFLAGS="-O2"
+ fi
+ fi
+ fi
+ ax_enable_debug=$enable_debug
+
+#AC_PROG_CC
+#AC_PROG_CPP
+#AC_PROG_CXX
+
+
+
+# Check whether --with-mpi was given.
+if test "${with_mpi+set}" = set; then
+ withval=$with_mpi;
+else
+ with_mpi=auto
+fi
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking whether to compile using MPI" >&5
+$as_echo_n "checking whether to compile using MPI... " >&6; }
+ if test x"$with_mpi" != xno; then
+ _ax_prog_cxx_mpi_mpi_wanted=yes
+ else
+ _ax_prog_cxx_mpi_mpi_wanted=no
+ fi
+ { $as_echo "$as_me:$LINENO: result: $_ax_prog_cxx_mpi_mpi_wanted" >&5
+$as_echo "$_ax_prog_cxx_mpi_mpi_wanted" >&6; }
+
+ if test x"$_ax_prog_cxx_mpi_mpi_wanted" = xyes; then
+ if test -z "$CXX" && test -n "$MPICXX"; then
+ CXX="$MPICXX"
+ else
+ if test -n "$ac_tool_prefix"; then
+ for ac_prog in mpic++ mpicxx mpiCC sxmpic++ hcp mpxlC_r mpxlC mpixlcxx_r mpixlcxx mpg++ mpc++ mpCC cmpic++ mpiFCC CCicpc pgCC pathCC sxc++ xlC_r xlC bgxlC_r bgxlC openCC sunCC crayCC g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CXX"; then
+ ac_cv_prog_CXX="$CXX" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+CXX=$ac_cv_prog_CXX
+if test -n "$CXX"; then
+ { $as_echo "$as_me:$LINENO: result: $CXX" >&5
+$as_echo "$CXX" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$CXX" && break
+ done
+fi
+if test -z "$CXX"; then
+ ac_ct_CXX=$CXX
+ for ac_prog in mpic++ mpicxx mpiCC sxmpic++ hcp mpxlC_r mpxlC mpixlcxx_r mpixlcxx mpg++ mpc++ mpCC cmpic++ mpiFCC CCicpc pgCC pathCC sxc++ xlC_r xlC bgxlC_r bgxlC openCC sunCC crayCC g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CXX"; then
+ ac_cv_prog_ac_ct_CXX="$ac_ct_CXX" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CXX="$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
+if test -n "$ac_ct_CXX"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
+$as_echo "$ac_ct_CXX" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_CXX" && break
+done
+
+ if test "x$ac_ct_CXX" = x; then
+ CXX=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CXX=$ac_ct_CXX
+ fi
+fi
+
+ fi
+ fi
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+if test -z "$CXX"; then
+ if test -n "$CCC"; then
+ CXX=$CCC
+ else
+ if test -n "$ac_tool_prefix"; then
+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CXX"; then
+ ac_cv_prog_CXX="$CXX" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+CXX=$ac_cv_prog_CXX
+if test -n "$CXX"; then
+ { $as_echo "$as_me:$LINENO: result: $CXX" >&5
+$as_echo "$CXX" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$CXX" && break
+ done
+fi
+if test -z "$CXX"; then
+ ac_ct_CXX=$CXX
+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CXX"; then
+ ac_cv_prog_ac_ct_CXX="$ac_ct_CXX" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CXX="$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
+if test -n "$ac_ct_CXX"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
+$as_echo "$ac_ct_CXX" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_CXX" && break
+done
+
+ if test "x$ac_ct_CXX" = x; then
+ CXX="g++"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CXX=$ac_ct_CXX
+ fi
+fi
+
+ fi
+fi
+# Provide some information about the compiler.
+$as_echo "$as_me:$LINENO: checking for C++ compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+{ (ac_try="$ac_compiler --version >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler --version >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+{ (ac_try="$ac_compiler -v >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -v >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+{ (ac_try="$ac_compiler -V >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -V >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+ac_clean_files_save=$ac_clean_files
+ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out"
+# Try to create an executable without -o first, disregard a.out.
+# It will help us diagnose broken compilers, and finding out an intuition
+# of exeext.
+{ $as_echo "$as_me:$LINENO: checking for C++ compiler default output file name" >&5
+$as_echo_n "checking for C++ compiler default output file name... " >&6; }
+ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
+
+# The possible output files:
+ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*"
+
+ac_rmfiles=
+for ac_file in $ac_files
+do
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
+ * ) ac_rmfiles="$ac_rmfiles $ac_file";;
+ esac
+done
+rm -f $ac_rmfiles
+
+if { (ac_try="$ac_link_default"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link_default") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
+# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
+# in a Makefile. We should not override ac_cv_exeext if it was cached,
+# so that the user can short-circuit this test for compilers unknown to
+# Autoconf.
+for ac_file in $ac_files ''
+do
+ test -f "$ac_file" || continue
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj )
+ ;;
+ [ab].out )
+ # We found the default executable, but exeext='' is most
+ # certainly right.
+ break;;
+ *.* )
+ if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
+ then :; else
+ ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+ fi
+ # We set ac_cv_exeext here because the later test for it is not
+ # safe: cross compilers may not add the suffix if given an `-o'
+ # argument, so we may need to know it at that point already.
+ # Even if this section looks crufty: it has the advantage of
+ # actually working.
+ break;;
+ * )
+ break;;
+ esac
+done
+test "$ac_cv_exeext" = no && ac_cv_exeext=
+
+else
+ ac_file=''
+fi
+
+{ $as_echo "$as_me:$LINENO: result: $ac_file" >&5
+$as_echo "$ac_file" >&6; }
+if test -z "$ac_file"; then
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: C++ compiler cannot create executables
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: C++ compiler cannot create executables
+See \`config.log' for more details." >&2;}
+ { (exit 77); exit 77; }; }; }
+fi
+
+ac_exeext=$ac_cv_exeext
+
+# Check that the compiler produces executables we can run. If not, either
+# the compiler is broken, or we cross compile.
+{ $as_echo "$as_me:$LINENO: checking whether the C++ compiler works" >&5
+$as_echo_n "checking whether the C++ compiler works... " >&6; }
+# FIXME: These cross compiler hacks should be removed for Autoconf 3.0
+# If not cross compiling, check that we can run a simple program.
+if test "$cross_compiling" != yes; then
+ if { ac_try='./$ac_file'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ cross_compiling=no
+ else
+ if test "$cross_compiling" = maybe; then
+ cross_compiling=yes
+ else
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: cannot run C++ compiled programs.
+If you meant to cross compile, use \`--host'.
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: cannot run C++ compiled programs.
+If you meant to cross compile, use \`--host'.
+See \`config.log' for more details." >&2;}
+ { (exit 1); exit 1; }; }; }
+ fi
+ fi
+fi
+{ $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out
+ac_clean_files=$ac_clean_files_save
+# Check that the compiler produces executables we can run. If not, either
+# the compiler is broken, or we cross compile.
+{ $as_echo "$as_me:$LINENO: checking whether we are cross compiling" >&5
+$as_echo_n "checking whether we are cross compiling... " >&6; }
+{ $as_echo "$as_me:$LINENO: result: $cross_compiling" >&5
+$as_echo "$cross_compiling" >&6; }
+
+{ $as_echo "$as_me:$LINENO: checking for suffix of executables" >&5
+$as_echo_n "checking for suffix of executables... " >&6; }
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ # If both `conftest.exe' and `conftest' are `present' (well, observable)
+# catch `conftest.exe'. For instance with Cygwin, `ls conftest' will
+# work properly (i.e., refer to `conftest.exe'), while it won't with
+# `rm'.
+for ac_file in conftest.exe conftest conftest.*; do
+ test -f "$ac_file" || continue
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
+ *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+ break;;
+ * ) break;;
+ esac
+done
+else
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of executables: cannot compile and link
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: cannot compute suffix of executables: cannot compile and link
+See \`config.log' for more details." >&2;}
+ { (exit 1); exit 1; }; }; }
+fi
+
+rm -f conftest$ac_cv_exeext
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_exeext" >&5
+$as_echo "$ac_cv_exeext" >&6; }
+
+rm -f conftest.$ac_ext
+EXEEXT=$ac_cv_exeext
+ac_exeext=$EXEEXT
+{ $as_echo "$as_me:$LINENO: checking for suffix of object files" >&5
+$as_echo_n "checking for suffix of object files... " >&6; }
+if test "${ac_cv_objext+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.o conftest.obj
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ for ac_file in conftest.o conftest.obj conftest.*; do
+ test -f "$ac_file" || continue;
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
+ *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
+ break;;
+ esac
+done
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+{ { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: cannot compute suffix of object files: cannot compile
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: cannot compute suffix of object files: cannot compile
+See \`config.log' for more details." >&2;}
+ { (exit 1); exit 1; }; }; }
+fi
+
+rm -f conftest.$ac_cv_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_objext" >&5
+$as_echo "$ac_cv_objext" >&6; }
+OBJEXT=$ac_cv_objext
+ac_objext=$OBJEXT
+{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
+$as_echo_n "checking whether we are using the GNU C++ compiler... " >&6; }
+if test "${ac_cv_cxx_compiler_gnu+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+#ifndef __GNUC__
+ choke me
+#endif
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_compiler_gnu=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_compiler_gnu=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ac_cv_cxx_compiler_gnu=$ac_compiler_gnu
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
+$as_echo "$ac_cv_cxx_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+ GXX=yes
+else
+ GXX=
+fi
+ac_test_CXXFLAGS=${CXXFLAGS+set}
+ac_save_CXXFLAGS=$CXXFLAGS
+{ $as_echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
+$as_echo_n "checking whether $CXX accepts -g... " >&6; }
+if test "${ac_cv_prog_cxx_g+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_save_cxx_werror_flag=$ac_cxx_werror_flag
+ ac_cxx_werror_flag=yes
+ ac_cv_prog_cxx_g=no
+ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cxx_g=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ CXXFLAGS=""
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
+ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cxx_g=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
+$as_echo "$ac_cv_prog_cxx_g" >&6; }
+if test "$ac_test_CXXFLAGS" = set; then
+ CXXFLAGS=$ac_save_CXXFLAGS
+elif test $ac_cv_prog_cxx_g = yes; then
+ if test "$GXX" = yes; then
+ CXXFLAGS="-g -O2"
+ else
+ CXXFLAGS="-g"
+ fi
+else
+ if test "$GXX" = yes; then
+ CXXFLAGS="-O2"
+ else
+ CXXFLAGS=
+ fi
+fi
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+
+
+
+
+# Check for compiler
+# Needs to be split off into an extra macro to ensure right expansion
+# order.
+
+
+if test x"$_ax_prog_cxx_mpi_mpi_wanted" = xno; then
+ _ax_prog_cxx_mpi_mpi_found=no
+else
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ # test whether MPI_Init() is available
+ # We do not use AC_SEARCH_LIBS here, as it caches its outcome and
+ # thus disallows corresponding calls in the other AX_PROG_*_MPI
+ # macros.
+ for lib in NONE mpi mpich; do
+ save_LIBS=$LIBS
+ if test x"$lib" = xNONE; then
+ { $as_echo "$as_me:$LINENO: checking for function MPI_Init" >&5
+$as_echo_n "checking for function MPI_Init... " >&6; }
+ else
+ { $as_echo "$as_me:$LINENO: checking for function MPI_Init in -l$lib" >&5
+$as_echo_n "checking for function MPI_Init in -l$lib... " >&6; }
+ LIBS="-l$lib $LIBS"
+ fi
+ cat >conftest.$ac_ext <<_ACEOF
+
+ /* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+extern "C" { void MPI_Init(); }
+
+int
+main ()
+{
+MPI_Init();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ _ax_prog_cxx_mpi_mpi_found=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ _ax_prog_cxx_mpi_mpi_found=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ { $as_echo "$as_me:$LINENO: result: $_ax_prog_cxx_mpi_mpi_found" >&5
+$as_echo "$_ax_prog_cxx_mpi_mpi_found" >&6; }
+ if test "x$_ax_prog_cxx_mpi_mpi_found" = "xyes"; then
+ break;
+ fi
+ LIBS=$save_LIBS
+ done
+
+ # Check for header
+ if test x"$_ax_prog_cxx_mpi_mpi_found" = xyes; then
+
+ { $as_echo "$as_me:$LINENO: checking for mpi.h" >&5
+$as_echo_n "checking for mpi.h... " >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <mpi.h>
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ _ax_prog_cxx_mpi_mpi_found=no
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+fi
+
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+if test x"$_ax_prog_cxx_mpi_mpi_found" = xyes; then
+
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_CXX_MPI /**/
+_ACEOF
+
+ :
+
+else
+
+
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_CXX_MPI /**/
+_ACEOF
+
+ if test x"$with_mpi" = xyes; then
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: MPI compiler requested, but couldn't use MPI.
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: MPI compiler requested, but couldn't use MPI.
+See \`config.log' for more details." >&2;}
+ { (exit 1); exit 1; }; }; }
+ else
+ { $as_echo "$as_me:$LINENO: WARNING: No MPI compiler found, won't use MPI." >&5
+$as_echo "$as_me: WARNING: No MPI compiler found, won't use MPI." >&2;}
+ fi
+
+ :
+
+fi
+
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking whether to compile using MPI" >&5
+$as_echo_n "checking whether to compile using MPI... " >&6; }
+ if test x"$with_mpi" != xno; then
+ _ax_prog_cc_mpi_mpi_wanted=yes
+ else
+ _ax_prog_cc_mpi_mpi_wanted=no
+ fi
+ { $as_echo "$as_me:$LINENO: result: $_ax_prog_cc_mpi_mpi_wanted" >&5
+$as_echo "$_ax_prog_cc_mpi_mpi_wanted" >&6; }
+
+ if test x"$_ax_prog_cc_mpi_mpi_wanted" = xyes; then
+ if test -z "$CC" && test -n "$MPICC"; then
+ CC="$MPICC"
+ else
+ if test -n "$ac_tool_prefix"; then
+ for ac_prog in mpicc mpixlc_r mpixlc hcc mpxlc_r mpxlc sxmpicc mpifcc mpgcc mpcc cmpicc cc gcc
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CC"; then
+ ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$CC" && break
+ done
+fi
+if test -z "$CC"; then
+ ac_ct_CC=$CC
+ for ac_prog in mpicc mpixlc_r mpixlc hcc mpxlc_r mpxlc sxmpicc mpifcc mpgcc mpcc cmpicc cc gcc
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CC"; then
+ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CC="$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CC=$ac_cv_prog_ac_ct_CC
+if test -n "$ac_ct_CC"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_CC" && break
+done
+
+ if test "x$ac_ct_CC" = x; then
+ CC=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CC=$ac_ct_CC
+ fi
+fi
+
+ fi
+ fi
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
+set dummy ${ac_tool_prefix}gcc; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CC"; then
+ ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="${ac_tool_prefix}gcc"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_CC"; then
+ ac_ct_CC=$CC
+ # Extract the first word of "gcc", so it can be a program name with args.
+set dummy gcc; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CC"; then
+ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CC="gcc"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CC=$ac_cv_prog_ac_ct_CC
+if test -n "$ac_ct_CC"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_CC" = x; then
+ CC=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CC=$ac_ct_CC
+ fi
+else
+ CC="$ac_cv_prog_CC"
+fi
+
+if test -z "$CC"; then
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
+set dummy ${ac_tool_prefix}cc; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CC"; then
+ ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="${ac_tool_prefix}cc"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ fi
+fi
+if test -z "$CC"; then
+ # Extract the first word of "cc", so it can be a program name with args.
+set dummy cc; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CC"; then
+ ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+ ac_prog_rejected=no
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
+ ac_prog_rejected=yes
+ continue
+ fi
+ ac_cv_prog_CC="cc"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+if test $ac_prog_rejected = yes; then
+ # We found a bogon in the path, so make sure we never use it.
+ set dummy $ac_cv_prog_CC
+ shift
+ if test $# != 0; then
+ # We chose a different compiler from the bogus one.
+ # However, it has the same basename, so the bogon will be chosen
+ # first if we set CC to just the basename; use the full file name.
+ shift
+ ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
+ fi
+fi
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$CC"; then
+ if test -n "$ac_tool_prefix"; then
+ for ac_prog in cl.exe
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CC"; then
+ ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+ { $as_echo "$as_me:$LINENO: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$CC" && break
+ done
+fi
+if test -z "$CC"; then
+ ac_ct_CC=$CC
+ for ac_prog in cl.exe
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_CC+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CC"; then
+ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CC="$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CC=$ac_cv_prog_ac_ct_CC
+if test -n "$ac_ct_CC"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_CC" && break
+done
+
+ if test "x$ac_ct_CC" = x; then
+ CC=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CC=$ac_ct_CC
+ fi
+fi
+
+fi
+
+
+test -z "$CC" && { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: no acceptable C compiler found in \$PATH
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: no acceptable C compiler found in \$PATH
+See \`config.log' for more details." >&2;}
+ { (exit 1); exit 1; }; }; }
+
+# Provide some information about the compiler.
+$as_echo "$as_me:$LINENO: checking for C compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+{ (ac_try="$ac_compiler --version >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler --version >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+{ (ac_try="$ac_compiler -v >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -v >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+{ (ac_try="$ac_compiler -V >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -V >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+
+{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU C compiler" >&5
+$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
+if test "${ac_cv_c_compiler_gnu+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+#ifndef __GNUC__
+ choke me
+#endif
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_compiler_gnu=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_compiler_gnu=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ac_cv_c_compiler_gnu=$ac_compiler_gnu
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_compiler_gnu" >&5
+$as_echo "$ac_cv_c_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+ GCC=yes
+else
+ GCC=
+fi
+ac_test_CFLAGS=${CFLAGS+set}
+ac_save_CFLAGS=$CFLAGS
+{ $as_echo "$as_me:$LINENO: checking whether $CC accepts -g" >&5
+$as_echo_n "checking whether $CC accepts -g... " >&6; }
+if test "${ac_cv_prog_cc_g+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_save_c_werror_flag=$ac_c_werror_flag
+ ac_c_werror_flag=yes
+ ac_cv_prog_cc_g=no
+ CFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cc_g=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ CFLAGS=""
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_c_werror_flag=$ac_save_c_werror_flag
+ CFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cc_g=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_c_werror_flag=$ac_save_c_werror_flag
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_g" >&5
+$as_echo "$ac_cv_prog_cc_g" >&6; }
+if test "$ac_test_CFLAGS" = set; then
+ CFLAGS=$ac_save_CFLAGS
+elif test $ac_cv_prog_cc_g = yes; then
+ if test "$GCC" = yes; then
+ CFLAGS="-g -O2"
+ else
+ CFLAGS="-g"
+ fi
+else
+ if test "$GCC" = yes; then
+ CFLAGS="-O2"
+ else
+ CFLAGS=
+ fi
+fi
+{ $as_echo "$as_me:$LINENO: checking for $CC option to accept ISO C89" >&5
+$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
+if test "${ac_cv_prog_cc_c89+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_prog_cc_c89=no
+ac_save_CC=$CC
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <stdarg.h>
+#include <stdio.h>
+#include <sys/types.h>
+#include <sys/stat.h>
+/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */
+struct buf { int x; };
+FILE * (*rcsopen) (struct buf *, struct stat *, int);
+static char *e (p, i)
+ char **p;
+ int i;
+{
+ return p[i];
+}
+static char *f (char * (*g) (char **, int), char **p, ...)
+{
+ char *s;
+ va_list v;
+ va_start (v,p);
+ s = g (p, va_arg (v,int));
+ va_end (v);
+ return s;
+}
+
+/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has
+ function prototypes and stuff, but not '\xHH' hex character constants.
+ These don't provoke an error unfortunately, instead are silently treated
+ as 'x'. The following induces an error, until -std is added to get
+ proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an
+ array size at least. It's necessary to write '\x00'==0 to get something
+ that's true only with -std. */
+int osf4_cc_array ['\x00' == 0 ? 1 : -1];
+
+/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
+ inside strings and character constants. */
+#define FOO(x) 'x'
+int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
+
+int test (int i, double x);
+struct s1 {int (*f) (int a);};
+struct s2 {int (*f) (double a);};
+int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int);
+int argc;
+char **argv;
+int
+main ()
+{
+return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1];
+ ;
+ return 0;
+}
+_ACEOF
+for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
+ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
+do
+ CC="$ac_save_CC $ac_arg"
+ rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cc_c89=$ac_arg
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext
+ test "x$ac_cv_prog_cc_c89" != "xno" && break
+done
+rm -f conftest.$ac_ext
+CC=$ac_save_CC
+
+fi
+# AC_CACHE_VAL
+case "x$ac_cv_prog_cc_c89" in
+ x)
+ { $as_echo "$as_me:$LINENO: result: none needed" >&5
+$as_echo "none needed" >&6; } ;;
+ xno)
+ { $as_echo "$as_me:$LINENO: result: unsupported" >&5
+$as_echo "unsupported" >&6; } ;;
+ *)
+ CC="$CC $ac_cv_prog_cc_c89"
+ { $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cc_c89" >&5
+$as_echo "$ac_cv_prog_cc_c89" >&6; } ;;
+esac
+
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+
+
+
+
+# Check for compiler
+# Needs to be split off into an extra macro to ensure right expansion
+# order.
+
+
+if test x"$_ax_prog_cc_mpi_mpi_wanted" = xno; then
+ _ax_prog_cc_mpi_mpi_found=no
+else
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+ # test whether MPI_Init is available
+ # We do not use AC_SEARCH_LIBS here, as it caches its outcome and
+ # thus disallows corresponding calls in the other AX_PROG_*_MPI
+ # macros.
+ for lib in NONE mpi mpich; do
+ save_LIBS=$LIBS
+ if test x"$lib" = xNONE; then
+ { $as_echo "$as_me:$LINENO: checking for function MPI_Init" >&5
+$as_echo_n "checking for function MPI_Init... " >&6; }
+ else
+ { $as_echo "$as_me:$LINENO: checking for function MPI_Init in -l$lib" >&5
+$as_echo_n "checking for function MPI_Init in -l$lib... " >&6; }
+ LIBS="-l$lib $LIBS"
+ fi
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char MPI_Init ();
+int
+main ()
+{
+return MPI_Init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ _ax_prog_cc_mpi_mpi_found=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ _ax_prog_cc_mpi_mpi_found=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ { $as_echo "$as_me:$LINENO: result: $_ax_prog_cc_mpi_mpi_found" >&5
+$as_echo "$_ax_prog_cc_mpi_mpi_found" >&6; }
+ if test "x$_ax_prog_cc_mpi_mpi_found" = "xyes"; then
+ break;
+ fi
+ LIBS=$save_LIBS
+ done
+
+ # Check for header
+ if test x"$_ax_prog_cc_mpi_mpi_found" = xyes; then
+
+ { $as_echo "$as_me:$LINENO: checking for mpi.h" >&5
+$as_echo_n "checking for mpi.h... " >&6; }
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <mpi.h>
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ _ax_prog_cc_mpi_mpi_found=no
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+fi
+
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+if test x"$_ax_prog_cc_mpi_mpi_found" = xyes; then
+
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_CC_MPI /**/
+_ACEOF
+
+ :
+
+else
+
+
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_CC_MPI /**/
+_ACEOF
+
+ if test x"$with_mpi" = xyes; then
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: MPI compiler requested, but couldn't use MPI.
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: MPI compiler requested, but couldn't use MPI.
+See \`config.log' for more details." >&2;}
+ { (exit 1); exit 1; }; }; }
+ else
+ { $as_echo "$as_me:$LINENO: WARNING: No MPI compiler found, won't use MPI." >&5
+$as_echo "$as_me: WARNING: No MPI compiler found, won't use MPI." >&2;}
+ fi
+
+ :
+
+fi
+
+
+
+
+
+ac_aux_dir=
+for ac_dir in "$srcdir" "$srcdir/.." "$srcdir/../.."; do
+ if test -f "$ac_dir/install-sh"; then
+ ac_aux_dir=$ac_dir
+ ac_install_sh="$ac_aux_dir/install-sh -c"
+ break
+ elif test -f "$ac_dir/install.sh"; then
+ ac_aux_dir=$ac_dir
+ ac_install_sh="$ac_aux_dir/install.sh -c"
+ break
+ elif test -f "$ac_dir/shtool"; then
+ ac_aux_dir=$ac_dir
+ ac_install_sh="$ac_aux_dir/shtool install -c"
+ break
+ fi
+done
+if test -z "$ac_aux_dir"; then
+ { { $as_echo "$as_me:$LINENO: error: cannot find install-sh or install.sh in \"$srcdir\" \"$srcdir/..\" \"$srcdir/../..\"" >&5
+$as_echo "$as_me: error: cannot find install-sh or install.sh in \"$srcdir\" \"$srcdir/..\" \"$srcdir/../..\"" >&2;}
+ { (exit 1); exit 1; }; }
+fi
+
+# These three variables are undocumented and unsupported,
+# and are intended to be withdrawn in a future Autoconf release.
+# They can cause serious problems if a builder's source tree is in a directory
+# whose full name contains unusual characters.
+ac_config_guess="$SHELL $ac_aux_dir/config.guess" # Please don't use this var.
+ac_config_sub="$SHELL $ac_aux_dir/config.sub" # Please don't use this var.
+ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var.
+
+
+case `pwd` in
+ *\ * | *\ *)
+ { $as_echo "$as_me:$LINENO: WARNING: Libtool does not cope well with whitespace in \`pwd\`" >&5
+$as_echo "$as_me: WARNING: Libtool does not cope well with whitespace in \`pwd\`" >&2;} ;;
+esac
+
+
+
+macro_version='2.2.6b'
+macro_revision='1.3017'
+
+
+
+
+
+
+
+
+
+
+
+
+
+ltmain="$ac_aux_dir/ltmain.sh"
+
+# Make sure we can run config.sub.
+$SHELL "$ac_aux_dir/config.sub" sun4 >/dev/null 2>&1 ||
+ { { $as_echo "$as_me:$LINENO: error: cannot run $SHELL $ac_aux_dir/config.sub" >&5
+$as_echo "$as_me: error: cannot run $SHELL $ac_aux_dir/config.sub" >&2;}
+ { (exit 1); exit 1; }; }
+
+{ $as_echo "$as_me:$LINENO: checking build system type" >&5
+$as_echo_n "checking build system type... " >&6; }
+if test "${ac_cv_build+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_build_alias=$build_alias
+test "x$ac_build_alias" = x &&
+ ac_build_alias=`$SHELL "$ac_aux_dir/config.guess"`
+test "x$ac_build_alias" = x &&
+ { { $as_echo "$as_me:$LINENO: error: cannot guess build type; you must specify one" >&5
+$as_echo "$as_me: error: cannot guess build type; you must specify one" >&2;}
+ { (exit 1); exit 1; }; }
+ac_cv_build=`$SHELL "$ac_aux_dir/config.sub" $ac_build_alias` ||
+ { { $as_echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&5
+$as_echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $ac_build_alias failed" >&2;}
+ { (exit 1); exit 1; }; }
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_build" >&5
+$as_echo "$ac_cv_build" >&6; }
+case $ac_cv_build in
+*-*-*) ;;
+*) { { $as_echo "$as_me:$LINENO: error: invalid value of canonical build" >&5
+$as_echo "$as_me: error: invalid value of canonical build" >&2;}
+ { (exit 1); exit 1; }; };;
+esac
+build=$ac_cv_build
+ac_save_IFS=$IFS; IFS='-'
+set x $ac_cv_build
+shift
+build_cpu=$1
+build_vendor=$2
+shift; shift
+# Remember, the first character of IFS is used to create $*,
+# except with old shells:
+build_os=$*
+IFS=$ac_save_IFS
+case $build_os in *\ *) build_os=`echo "$build_os" | sed 's/ /-/g'`;; esac
+
+
+{ $as_echo "$as_me:$LINENO: checking host system type" >&5
+$as_echo_n "checking host system type... " >&6; }
+if test "${ac_cv_host+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "x$host_alias" = x; then
+ ac_cv_host=$ac_cv_build
+else
+ ac_cv_host=`$SHELL "$ac_aux_dir/config.sub" $host_alias` ||
+ { { $as_echo "$as_me:$LINENO: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&5
+$as_echo "$as_me: error: $SHELL $ac_aux_dir/config.sub $host_alias failed" >&2;}
+ { (exit 1); exit 1; }; }
+fi
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_host" >&5
+$as_echo "$ac_cv_host" >&6; }
+case $ac_cv_host in
+*-*-*) ;;
+*) { { $as_echo "$as_me:$LINENO: error: invalid value of canonical host" >&5
+$as_echo "$as_me: error: invalid value of canonical host" >&2;}
+ { (exit 1); exit 1; }; };;
+esac
+host=$ac_cv_host
+ac_save_IFS=$IFS; IFS='-'
+set x $ac_cv_host
+shift
+host_cpu=$1
+host_vendor=$2
+shift; shift
+# Remember, the first character of IFS is used to create $*,
+# except with old shells:
+host_os=$*
+IFS=$ac_save_IFS
+case $host_os in *\ *) host_os=`echo "$host_os" | sed 's/ /-/g'`;; esac
+
+
+{ $as_echo "$as_me:$LINENO: checking for a sed that does not truncate output" >&5
+$as_echo_n "checking for a sed that does not truncate output... " >&6; }
+if test "${ac_cv_path_SED+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_script=s/aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa/bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb/
+ for ac_i in 1 2 3 4 5 6 7; do
+ ac_script="$ac_script$as_nl$ac_script"
+ done
+ echo "$ac_script" 2>/dev/null | sed 99q >conftest.sed
+ $as_unset ac_script || ac_script=
+ if test -z "$SED"; then
+ ac_path_SED_found=false
+ # Loop through the user's path and test for each of PROGNAME-LIST
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_prog in sed gsed; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ ac_path_SED="$as_dir/$ac_prog$ac_exec_ext"
+ { test -f "$ac_path_SED" && $as_test_x "$ac_path_SED"; } || continue
+# Check for GNU ac_path_SED and select it if it is found.
+ # Check for GNU $ac_path_SED
+case `"$ac_path_SED" --version 2>&1` in
+*GNU*)
+ ac_cv_path_SED="$ac_path_SED" ac_path_SED_found=:;;
+*)
+ ac_count=0
+ $as_echo_n 0123456789 >"conftest.in"
+ while :
+ do
+ cat "conftest.in" "conftest.in" >"conftest.tmp"
+ mv "conftest.tmp" "conftest.in"
+ cp "conftest.in" "conftest.nl"
+ $as_echo '' >> "conftest.nl"
+ "$ac_path_SED" -f conftest.sed < "conftest.nl" >"conftest.out" 2>/dev/null || break
+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
+ ac_count=`expr $ac_count + 1`
+ if test $ac_count -gt ${ac_path_SED_max-0}; then
+ # Best one so far, save it but keep looking for a better one
+ ac_cv_path_SED="$ac_path_SED"
+ ac_path_SED_max=$ac_count
+ fi
+ # 10*(2^10) chars as input seems more than enough
+ test $ac_count -gt 10 && break
+ done
+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
+esac
+
+ $ac_path_SED_found && break 3
+ done
+ done
+done
+IFS=$as_save_IFS
+ if test -z "$ac_cv_path_SED"; then
+ { { $as_echo "$as_me:$LINENO: error: no acceptable sed could be found in \$PATH" >&5
+$as_echo "$as_me: error: no acceptable sed could be found in \$PATH" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+else
+ ac_cv_path_SED=$SED
+fi
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_SED" >&5
+$as_echo "$ac_cv_path_SED" >&6; }
+ SED="$ac_cv_path_SED"
+ rm -f conftest.sed
+
+test -z "$SED" && SED=sed
+Xsed="$SED -e 1s/^X//"
+
+
+
+
+
+
+
+
+
+
+
+{ $as_echo "$as_me:$LINENO: checking for grep that handles long lines and -e" >&5
+$as_echo_n "checking for grep that handles long lines and -e... " >&6; }
+if test "${ac_cv_path_GREP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -z "$GREP"; then
+ ac_path_GREP_found=false
+ # Loop through the user's path and test for each of PROGNAME-LIST
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_prog in grep ggrep; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ ac_path_GREP="$as_dir/$ac_prog$ac_exec_ext"
+ { test -f "$ac_path_GREP" && $as_test_x "$ac_path_GREP"; } || continue
+# Check for GNU ac_path_GREP and select it if it is found.
+ # Check for GNU $ac_path_GREP
+case `"$ac_path_GREP" --version 2>&1` in
+*GNU*)
+ ac_cv_path_GREP="$ac_path_GREP" ac_path_GREP_found=:;;
+*)
+ ac_count=0
+ $as_echo_n 0123456789 >"conftest.in"
+ while :
+ do
+ cat "conftest.in" "conftest.in" >"conftest.tmp"
+ mv "conftest.tmp" "conftest.in"
+ cp "conftest.in" "conftest.nl"
+ $as_echo 'GREP' >> "conftest.nl"
+ "$ac_path_GREP" -e 'GREP$' -e '-(cannot match)-' < "conftest.nl" >"conftest.out" 2>/dev/null || break
+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
+ ac_count=`expr $ac_count + 1`
+ if test $ac_count -gt ${ac_path_GREP_max-0}; then
+ # Best one so far, save it but keep looking for a better one
+ ac_cv_path_GREP="$ac_path_GREP"
+ ac_path_GREP_max=$ac_count
+ fi
+ # 10*(2^10) chars as input seems more than enough
+ test $ac_count -gt 10 && break
+ done
+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
+esac
+
+ $ac_path_GREP_found && break 3
+ done
+ done
+done
+IFS=$as_save_IFS
+ if test -z "$ac_cv_path_GREP"; then
+ { { $as_echo "$as_me:$LINENO: error: no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
+$as_echo "$as_me: error: no acceptable grep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+else
+ ac_cv_path_GREP=$GREP
+fi
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_GREP" >&5
+$as_echo "$ac_cv_path_GREP" >&6; }
+ GREP="$ac_cv_path_GREP"
+
+
+{ $as_echo "$as_me:$LINENO: checking for egrep" >&5
+$as_echo_n "checking for egrep... " >&6; }
+if test "${ac_cv_path_EGREP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if echo a | $GREP -E '(a|b)' >/dev/null 2>&1
+ then ac_cv_path_EGREP="$GREP -E"
+ else
+ if test -z "$EGREP"; then
+ ac_path_EGREP_found=false
+ # Loop through the user's path and test for each of PROGNAME-LIST
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_prog in egrep; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ ac_path_EGREP="$as_dir/$ac_prog$ac_exec_ext"
+ { test -f "$ac_path_EGREP" && $as_test_x "$ac_path_EGREP"; } || continue
+# Check for GNU ac_path_EGREP and select it if it is found.
+ # Check for GNU $ac_path_EGREP
+case `"$ac_path_EGREP" --version 2>&1` in
+*GNU*)
+ ac_cv_path_EGREP="$ac_path_EGREP" ac_path_EGREP_found=:;;
+*)
+ ac_count=0
+ $as_echo_n 0123456789 >"conftest.in"
+ while :
+ do
+ cat "conftest.in" "conftest.in" >"conftest.tmp"
+ mv "conftest.tmp" "conftest.in"
+ cp "conftest.in" "conftest.nl"
+ $as_echo 'EGREP' >> "conftest.nl"
+ "$ac_path_EGREP" 'EGREP$' < "conftest.nl" >"conftest.out" 2>/dev/null || break
+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
+ ac_count=`expr $ac_count + 1`
+ if test $ac_count -gt ${ac_path_EGREP_max-0}; then
+ # Best one so far, save it but keep looking for a better one
+ ac_cv_path_EGREP="$ac_path_EGREP"
+ ac_path_EGREP_max=$ac_count
+ fi
+ # 10*(2^10) chars as input seems more than enough
+ test $ac_count -gt 10 && break
+ done
+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
+esac
+
+ $ac_path_EGREP_found && break 3
+ done
+ done
+done
+IFS=$as_save_IFS
+ if test -z "$ac_cv_path_EGREP"; then
+ { { $as_echo "$as_me:$LINENO: error: no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
+$as_echo "$as_me: error: no acceptable egrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+else
+ ac_cv_path_EGREP=$EGREP
+fi
+
+ fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_EGREP" >&5
+$as_echo "$ac_cv_path_EGREP" >&6; }
+ EGREP="$ac_cv_path_EGREP"
+
+
+{ $as_echo "$as_me:$LINENO: checking for fgrep" >&5
+$as_echo_n "checking for fgrep... " >&6; }
+if test "${ac_cv_path_FGREP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if echo 'ab*c' | $GREP -F 'ab*c' >/dev/null 2>&1
+ then ac_cv_path_FGREP="$GREP -F"
+ else
+ if test -z "$FGREP"; then
+ ac_path_FGREP_found=false
+ # Loop through the user's path and test for each of PROGNAME-LIST
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH$PATH_SEPARATOR/usr/xpg4/bin
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_prog in fgrep; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ ac_path_FGREP="$as_dir/$ac_prog$ac_exec_ext"
+ { test -f "$ac_path_FGREP" && $as_test_x "$ac_path_FGREP"; } || continue
+# Check for GNU ac_path_FGREP and select it if it is found.
+ # Check for GNU $ac_path_FGREP
+case `"$ac_path_FGREP" --version 2>&1` in
+*GNU*)
+ ac_cv_path_FGREP="$ac_path_FGREP" ac_path_FGREP_found=:;;
+*)
+ ac_count=0
+ $as_echo_n 0123456789 >"conftest.in"
+ while :
+ do
+ cat "conftest.in" "conftest.in" >"conftest.tmp"
+ mv "conftest.tmp" "conftest.in"
+ cp "conftest.in" "conftest.nl"
+ $as_echo 'FGREP' >> "conftest.nl"
+ "$ac_path_FGREP" FGREP < "conftest.nl" >"conftest.out" 2>/dev/null || break
+ diff "conftest.out" "conftest.nl" >/dev/null 2>&1 || break
+ ac_count=`expr $ac_count + 1`
+ if test $ac_count -gt ${ac_path_FGREP_max-0}; then
+ # Best one so far, save it but keep looking for a better one
+ ac_cv_path_FGREP="$ac_path_FGREP"
+ ac_path_FGREP_max=$ac_count
+ fi
+ # 10*(2^10) chars as input seems more than enough
+ test $ac_count -gt 10 && break
+ done
+ rm -f conftest.in conftest.tmp conftest.nl conftest.out;;
+esac
+
+ $ac_path_FGREP_found && break 3
+ done
+ done
+done
+IFS=$as_save_IFS
+ if test -z "$ac_cv_path_FGREP"; then
+ { { $as_echo "$as_me:$LINENO: error: no acceptable fgrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&5
+$as_echo "$as_me: error: no acceptable fgrep could be found in $PATH$PATH_SEPARATOR/usr/xpg4/bin" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+else
+ ac_cv_path_FGREP=$FGREP
+fi
+
+ fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_path_FGREP" >&5
+$as_echo "$ac_cv_path_FGREP" >&6; }
+ FGREP="$ac_cv_path_FGREP"
+
+
+test -z "$GREP" && GREP=grep
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+# Check whether --with-gnu-ld was given.
+if test "${with_gnu_ld+set}" = set; then
+ withval=$with_gnu_ld; test "$withval" = no || with_gnu_ld=yes
+else
+ with_gnu_ld=no
+fi
+
+ac_prog=ld
+if test "$GCC" = yes; then
+ # Check if gcc -print-prog-name=ld gives a path.
+ { $as_echo "$as_me:$LINENO: checking for ld used by $CC" >&5
+$as_echo_n "checking for ld used by $CC... " >&6; }
+ case $host in
+ *-*-mingw*)
+ # gcc leaves a trailing carriage return which upsets mingw
+ ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
+ *)
+ ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
+ esac
+ case $ac_prog in
+ # Accept absolute paths.
+ [\\/]* | ?:[\\/]*)
+ re_direlt='/[^/][^/]*/\.\./'
+ # Canonicalize the pathname of ld
+ ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
+ while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
+ ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
+ done
+ test -z "$LD" && LD="$ac_prog"
+ ;;
+ "")
+ # If it fails, then pretend we aren't using GCC.
+ ac_prog=ld
+ ;;
+ *)
+ # If it is relative, then search for the first ld in PATH.
+ with_gnu_ld=unknown
+ ;;
+ esac
+elif test "$with_gnu_ld" = yes; then
+ { $as_echo "$as_me:$LINENO: checking for GNU ld" >&5
+$as_echo_n "checking for GNU ld... " >&6; }
+else
+ { $as_echo "$as_me:$LINENO: checking for non-GNU ld" >&5
+$as_echo_n "checking for non-GNU ld... " >&6; }
+fi
+if test "${lt_cv_path_LD+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -z "$LD"; then
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ for ac_dir in $PATH; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ if test -f "$ac_dir/$ac_prog" || test -f "$ac_dir/$ac_prog$ac_exeext"; then
+ lt_cv_path_LD="$ac_dir/$ac_prog"
+ # Check to see if the program is GNU ld. I'd rather use --version,
+ # but apparently some variants of GNU ld only accept -v.
+ # Break only if it was the GNU/non-GNU ld that we prefer.
+ case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
+ *GNU* | *'with BFD'*)
+ test "$with_gnu_ld" != no && break
+ ;;
+ *)
+ test "$with_gnu_ld" != yes && break
+ ;;
+ esac
+ fi
+ done
+ IFS="$lt_save_ifs"
+else
+ lt_cv_path_LD="$LD" # Let the user override the test with a path.
+fi
+fi
+
+LD="$lt_cv_path_LD"
+if test -n "$LD"; then
+ { $as_echo "$as_me:$LINENO: result: $LD" >&5
+$as_echo "$LD" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+test -z "$LD" && { { $as_echo "$as_me:$LINENO: error: no acceptable ld found in \$PATH" >&5
+$as_echo "$as_me: error: no acceptable ld found in \$PATH" >&2;}
+ { (exit 1); exit 1; }; }
+{ $as_echo "$as_me:$LINENO: checking if the linker ($LD) is GNU ld" >&5
+$as_echo_n "checking if the linker ($LD) is GNU ld... " >&6; }
+if test "${lt_cv_prog_gnu_ld+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ # I'd rather use --version here, but apparently some GNU lds only accept -v.
+case `$LD -v 2>&1 </dev/null` in
+*GNU* | *'with BFD'*)
+ lt_cv_prog_gnu_ld=yes
+ ;;
+*)
+ lt_cv_prog_gnu_ld=no
+ ;;
+esac
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_gnu_ld" >&5
+$as_echo "$lt_cv_prog_gnu_ld" >&6; }
+with_gnu_ld=$lt_cv_prog_gnu_ld
+
+
+
+
+
+
+
+
+
+{ $as_echo "$as_me:$LINENO: checking for BSD- or MS-compatible name lister (nm)" >&5
+$as_echo_n "checking for BSD- or MS-compatible name lister (nm)... " >&6; }
+if test "${lt_cv_path_NM+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$NM"; then
+ # Let the user override the test.
+ lt_cv_path_NM="$NM"
+else
+ lt_nm_to_check="${ac_tool_prefix}nm"
+ if test -n "$ac_tool_prefix" && test "$build" = "$host"; then
+ lt_nm_to_check="$lt_nm_to_check nm"
+ fi
+ for lt_tmp_nm in $lt_nm_to_check; do
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ tmp_nm="$ac_dir/$lt_tmp_nm"
+ if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then
+ # Check to see if the nm accepts a BSD-compat flag.
+ # Adding the `sed 1q' prevents false positives on HP-UX, which says:
+ # nm: unknown option "B" ignored
+ # Tru64's nm complains that /dev/null is an invalid object file
+ case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in
+ */dev/null* | *'Invalid file or object type'*)
+ lt_cv_path_NM="$tmp_nm -B"
+ break
+ ;;
+ *)
+ case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in
+ */dev/null*)
+ lt_cv_path_NM="$tmp_nm -p"
+ break
+ ;;
+ *)
+ lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but
+ continue # so that we can try to find one that supports BSD flags
+ ;;
+ esac
+ ;;
+ esac
+ fi
+ done
+ IFS="$lt_save_ifs"
+ done
+ : ${lt_cv_path_NM=no}
+fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_path_NM" >&5
+$as_echo "$lt_cv_path_NM" >&6; }
+if test "$lt_cv_path_NM" != "no"; then
+ NM="$lt_cv_path_NM"
+else
+ # Didn't find any BSD compatible name lister, look for dumpbin.
+ if test -n "$ac_tool_prefix"; then
+ for ac_prog in "dumpbin -symbols" "link -dump -symbols"
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_DUMPBIN+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$DUMPBIN"; then
+ ac_cv_prog_DUMPBIN="$DUMPBIN" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_DUMPBIN="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+DUMPBIN=$ac_cv_prog_DUMPBIN
+if test -n "$DUMPBIN"; then
+ { $as_echo "$as_me:$LINENO: result: $DUMPBIN" >&5
+$as_echo "$DUMPBIN" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$DUMPBIN" && break
+ done
+fi
+if test -z "$DUMPBIN"; then
+ ac_ct_DUMPBIN=$DUMPBIN
+ for ac_prog in "dumpbin -symbols" "link -dump -symbols"
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_DUMPBIN+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_DUMPBIN"; then
+ ac_cv_prog_ac_ct_DUMPBIN="$ac_ct_DUMPBIN" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_DUMPBIN="$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_DUMPBIN=$ac_cv_prog_ac_ct_DUMPBIN
+if test -n "$ac_ct_DUMPBIN"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_DUMPBIN" >&5
+$as_echo "$ac_ct_DUMPBIN" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_DUMPBIN" && break
+done
+
+ if test "x$ac_ct_DUMPBIN" = x; then
+ DUMPBIN=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ DUMPBIN=$ac_ct_DUMPBIN
+ fi
+fi
+
+
+ if test "$DUMPBIN" != ":"; then
+ NM="$DUMPBIN"
+ fi
+fi
+test -z "$NM" && NM=nm
+
+
+
+
+
+
+{ $as_echo "$as_me:$LINENO: checking the name lister ($NM) interface" >&5
+$as_echo_n "checking the name lister ($NM) interface... " >&6; }
+if test "${lt_cv_nm_interface+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_nm_interface="BSD nm"
+ echo "int some_variable = 0;" > conftest.$ac_ext
+ (eval echo "\"\$as_me:4937: $ac_compile\"" >&5)
+ (eval "$ac_compile" 2>conftest.err)
+ cat conftest.err >&5
+ (eval echo "\"\$as_me:4940: $NM \\\"conftest.$ac_objext\\\"\"" >&5)
+ (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out)
+ cat conftest.err >&5
+ (eval echo "\"\$as_me:4943: output\"" >&5)
+ cat conftest.out >&5
+ if $GREP 'External.*some_variable' conftest.out > /dev/null; then
+ lt_cv_nm_interface="MS dumpbin"
+ fi
+ rm -f conftest*
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_nm_interface" >&5
+$as_echo "$lt_cv_nm_interface" >&6; }
+
+{ $as_echo "$as_me:$LINENO: checking whether ln -s works" >&5
+$as_echo_n "checking whether ln -s works... " >&6; }
+LN_S=$as_ln_s
+if test "$LN_S" = "ln -s"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no, using $LN_S" >&5
+$as_echo "no, using $LN_S" >&6; }
+fi
+
+# find the maximum length of command line arguments
+{ $as_echo "$as_me:$LINENO: checking the maximum length of command line arguments" >&5
+$as_echo_n "checking the maximum length of command line arguments... " >&6; }
+if test "${lt_cv_sys_max_cmd_len+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ i=0
+ teststring="ABCD"
+
+ case $build_os in
+ msdosdjgpp*)
+ # On DJGPP, this test can blow up pretty badly due to problems in libc
+ # (any single argument exceeding 2000 bytes causes a buffer overrun
+ # during glob expansion). Even if it were fixed, the result of this
+ # check would be larger than it should be.
+ lt_cv_sys_max_cmd_len=12288; # 12K is about right
+ ;;
+
+ gnu*)
+ # Under GNU Hurd, this test is not required because there is
+ # no limit to the length of command line arguments.
+ # Libtool will interpret -1 as no limit whatsoever
+ lt_cv_sys_max_cmd_len=-1;
+ ;;
+
+ cygwin* | mingw* | cegcc*)
+ # On Win9x/ME, this test blows up -- it succeeds, but takes
+ # about 5 minutes as the teststring grows exponentially.
+ # Worse, since 9x/ME are not pre-emptively multitasking,
+ # you end up with a "frozen" computer, even though with patience
+ # the test eventually succeeds (with a max line length of 256k).
+ # Instead, let's just punt: use the minimum linelength reported by
+ # all of the supported platforms: 8192 (on NT/2K/XP).
+ lt_cv_sys_max_cmd_len=8192;
+ ;;
+
+ amigaos*)
+ # On AmigaOS with pdksh, this test takes hours, literally.
+ # So we just punt and use a minimum line length of 8192.
+ lt_cv_sys_max_cmd_len=8192;
+ ;;
+
+ netbsd* | freebsd* | openbsd* | darwin* | dragonfly*)
+ # This has been around since 386BSD, at least. Likely further.
+ if test -x /sbin/sysctl; then
+ lt_cv_sys_max_cmd_len=`/sbin/sysctl -n kern.argmax`
+ elif test -x /usr/sbin/sysctl; then
+ lt_cv_sys_max_cmd_len=`/usr/sbin/sysctl -n kern.argmax`
+ else
+ lt_cv_sys_max_cmd_len=65536 # usable default for all BSDs
+ fi
+ # And add a safety zone
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
+ ;;
+
+ interix*)
+ # We know the value 262144 and hardcode it with a safety zone (like BSD)
+ lt_cv_sys_max_cmd_len=196608
+ ;;
+
+ osf*)
+ # Dr. Hans Ekkehard Plesser reports seeing a kernel panic running configure
+ # due to this test when exec_disable_arg_limit is 1 on Tru64. It is not
+ # nice to cause kernel panics so lets avoid the loop below.
+ # First set a reasonable default.
+ lt_cv_sys_max_cmd_len=16384
+ #
+ if test -x /sbin/sysconfig; then
+ case `/sbin/sysconfig -q proc exec_disable_arg_limit` in
+ *1*) lt_cv_sys_max_cmd_len=-1 ;;
+ esac
+ fi
+ ;;
+ sco3.2v5*)
+ lt_cv_sys_max_cmd_len=102400
+ ;;
+ sysv5* | sco5v6* | sysv4.2uw2*)
+ kargmax=`grep ARG_MAX /etc/conf/cf.d/stune 2>/dev/null`
+ if test -n "$kargmax"; then
+ lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[ ]//'`
+ else
+ lt_cv_sys_max_cmd_len=32768
+ fi
+ ;;
+ *)
+ lt_cv_sys_max_cmd_len=`(getconf ARG_MAX) 2> /dev/null`
+ if test -n "$lt_cv_sys_max_cmd_len"; then
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
+ else
+ # Make teststring a little bigger before we do anything with it.
+ # a 1K string should be a reasonable start.
+ for i in 1 2 3 4 5 6 7 8 ; do
+ teststring=$teststring$teststring
+ done
+ SHELL=${SHELL-${CONFIG_SHELL-/bin/sh}}
+ # If test is not a shell built-in, we'll probably end up computing a
+ # maximum length that is only half of the actual maximum length, but
+ # we can't tell.
+ while { test "X"`$SHELL $0 --fallback-echo "X$teststring$teststring" 2>/dev/null` \
+ = "XX$teststring$teststring"; } >/dev/null 2>&1 &&
+ test $i != 17 # 1/2 MB should be enough
+ do
+ i=`expr $i + 1`
+ teststring=$teststring$teststring
+ done
+ # Only check the string length outside the loop.
+ lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1`
+ teststring=
+ # Add a significant safety factor because C++ compilers can tack on
+ # massive amounts of additional arguments before passing them to the
+ # linker. It appears as though 1/2 is a usable value.
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2`
+ fi
+ ;;
+ esac
+
+fi
+
+if test -n $lt_cv_sys_max_cmd_len ; then
+ { $as_echo "$as_me:$LINENO: result: $lt_cv_sys_max_cmd_len" >&5
+$as_echo "$lt_cv_sys_max_cmd_len" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: none" >&5
+$as_echo "none" >&6; }
+fi
+max_cmd_len=$lt_cv_sys_max_cmd_len
+
+
+
+
+
+
+: ${CP="cp -f"}
+: ${MV="mv -f"}
+: ${RM="rm -f"}
+
+{ $as_echo "$as_me:$LINENO: checking whether the shell understands some XSI constructs" >&5
+$as_echo_n "checking whether the shell understands some XSI constructs... " >&6; }
+# Try some XSI features
+xsi_shell=no
+( _lt_dummy="a/b/c"
+ test "${_lt_dummy##*/},${_lt_dummy%/*},"${_lt_dummy%"$_lt_dummy"}, \
+ = c,a/b,, \
+ && eval 'test $(( 1 + 1 )) -eq 2 \
+ && test "${#_lt_dummy}" -eq 5' ) >/dev/null 2>&1 \
+ && xsi_shell=yes
+{ $as_echo "$as_me:$LINENO: result: $xsi_shell" >&5
+$as_echo "$xsi_shell" >&6; }
+
+
+{ $as_echo "$as_me:$LINENO: checking whether the shell understands \"+=\"" >&5
+$as_echo_n "checking whether the shell understands \"+=\"... " >&6; }
+lt_shell_append=no
+( foo=bar; set foo baz; eval "$1+=\$2" && test "$foo" = barbaz ) \
+ >/dev/null 2>&1 \
+ && lt_shell_append=yes
+{ $as_echo "$as_me:$LINENO: result: $lt_shell_append" >&5
+$as_echo "$lt_shell_append" >&6; }
+
+
+if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+ lt_unset=unset
+else
+ lt_unset=false
+fi
+
+
+
+
+
+# test EBCDIC or ASCII
+case `echo X|tr X '\101'` in
+ A) # ASCII based system
+ # \n is not interpreted correctly by Solaris 8 /usr/ucb/tr
+ lt_SP2NL='tr \040 \012'
+ lt_NL2SP='tr \015\012 \040\040'
+ ;;
+ *) # EBCDIC based system
+ lt_SP2NL='tr \100 \n'
+ lt_NL2SP='tr \r\n \100\100'
+ ;;
+esac
+
+
+
+
+
+
+
+
+
+{ $as_echo "$as_me:$LINENO: checking for $LD option to reload object files" >&5
+$as_echo_n "checking for $LD option to reload object files... " >&6; }
+if test "${lt_cv_ld_reload_flag+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_ld_reload_flag='-r'
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_ld_reload_flag" >&5
+$as_echo "$lt_cv_ld_reload_flag" >&6; }
+reload_flag=$lt_cv_ld_reload_flag
+case $reload_flag in
+"" | " "*) ;;
+*) reload_flag=" $reload_flag" ;;
+esac
+reload_cmds='$LD$reload_flag -o $output$reload_objs'
+case $host_os in
+ darwin*)
+ if test "$GCC" = yes; then
+ reload_cmds='$LTCC $LTCFLAGS -nostdlib ${wl}-r -o $output$reload_objs'
+ else
+ reload_cmds='$LD$reload_flag -o $output$reload_objs'
+ fi
+ ;;
+esac
+
+
+
+
+
+
+
+
+
+if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}objdump", so it can be a program name with args.
+set dummy ${ac_tool_prefix}objdump; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_OBJDUMP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$OBJDUMP"; then
+ ac_cv_prog_OBJDUMP="$OBJDUMP" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_OBJDUMP="${ac_tool_prefix}objdump"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+OBJDUMP=$ac_cv_prog_OBJDUMP
+if test -n "$OBJDUMP"; then
+ { $as_echo "$as_me:$LINENO: result: $OBJDUMP" >&5
+$as_echo "$OBJDUMP" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_OBJDUMP"; then
+ ac_ct_OBJDUMP=$OBJDUMP
+ # Extract the first word of "objdump", so it can be a program name with args.
+set dummy objdump; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_OBJDUMP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_OBJDUMP"; then
+ ac_cv_prog_ac_ct_OBJDUMP="$ac_ct_OBJDUMP" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_OBJDUMP="objdump"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_OBJDUMP=$ac_cv_prog_ac_ct_OBJDUMP
+if test -n "$ac_ct_OBJDUMP"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_OBJDUMP" >&5
+$as_echo "$ac_ct_OBJDUMP" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_OBJDUMP" = x; then
+ OBJDUMP="false"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ OBJDUMP=$ac_ct_OBJDUMP
+ fi
+else
+ OBJDUMP="$ac_cv_prog_OBJDUMP"
+fi
+
+test -z "$OBJDUMP" && OBJDUMP=objdump
+
+
+
+
+
+
+
+
+
+{ $as_echo "$as_me:$LINENO: checking how to recognize dependent libraries" >&5
+$as_echo_n "checking how to recognize dependent libraries... " >&6; }
+if test "${lt_cv_deplibs_check_method+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_file_magic_cmd='$MAGIC_CMD'
+lt_cv_file_magic_test_file=
+lt_cv_deplibs_check_method='unknown'
+# Need to set the preceding variable on all platforms that support
+# interlibrary dependencies.
+# 'none' -- dependencies not supported.
+# `unknown' -- same as none, but documents that we really don't know.
+# 'pass_all' -- all dependencies passed with no checks.
+# 'test_compile' -- check by making test program.
+# 'file_magic [[regex]]' -- check by looking for files in library path
+# which responds to the $file_magic_cmd with a given extended regex.
+# If you have `file' or equivalent on your system and you're not sure
+# whether `pass_all' will *always* work, you probably want this one.
+
+case $host_os in
+aix[4-9]*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+beos*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+bsdi[45]*)
+ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib)'
+ lt_cv_file_magic_cmd='/usr/bin/file -L'
+ lt_cv_file_magic_test_file=/shlib/libc.so
+ ;;
+
+cygwin*)
+ # func_win32_libid is a shell function defined in ltmain.sh
+ lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL'
+ lt_cv_file_magic_cmd='func_win32_libid'
+ ;;
+
+mingw* | pw32*)
+ # Base MSYS/MinGW do not provide the 'file' command needed by
+ # func_win32_libid shell function, so use a weaker test based on 'objdump',
+ # unless we find 'file', for example because we are cross-compiling.
+ if ( file / ) >/dev/null 2>&1; then
+ lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL'
+ lt_cv_file_magic_cmd='func_win32_libid'
+ else
+ lt_cv_deplibs_check_method='file_magic file format pei*-i386(.*architecture: i386)?'
+ lt_cv_file_magic_cmd='$OBJDUMP -f'
+ fi
+ ;;
+
+cegcc)
+ # use the weaker test based on 'objdump'. See mingw*.
+ lt_cv_deplibs_check_method='file_magic file format pe-arm-.*little(.*architecture: arm)?'
+ lt_cv_file_magic_cmd='$OBJDUMP -f'
+ ;;
+
+darwin* | rhapsody*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+freebsd* | dragonfly*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then
+ case $host_cpu in
+ i*86 )
+ # Not sure whether the presence of OpenBSD here was a mistake.
+ # Let's accept both of them until this is cleared up.
+ lt_cv_deplibs_check_method='file_magic (FreeBSD|OpenBSD|DragonFly)/i[3-9]86 (compact )?demand paged shared library'
+ lt_cv_file_magic_cmd=/usr/bin/file
+ lt_cv_file_magic_test_file=`echo /usr/lib/libc.so.*`
+ ;;
+ esac
+ else
+ lt_cv_deplibs_check_method=pass_all
+ fi
+ ;;
+
+gnu*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+hpux10.20* | hpux11*)
+ lt_cv_file_magic_cmd=/usr/bin/file
+ case $host_cpu in
+ ia64*)
+ lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF-[0-9][0-9]) shared object file - IA64'
+ lt_cv_file_magic_test_file=/usr/lib/hpux32/libc.so
+ ;;
+ hppa*64*)
+ lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF-[0-9][0-9]) shared object file - PA-RISC [0-9].[0-9]'
+ lt_cv_file_magic_test_file=/usr/lib/pa20_64/libc.sl
+ ;;
+ *)
+ lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|PA-RISC[0-9].[0-9]) shared library'
+ lt_cv_file_magic_test_file=/usr/lib/libc.sl
+ ;;
+ esac
+ ;;
+
+interix[3-9]*)
+ # PIC code is broken on Interix 3.x, that's why |\.a not |_pic\.a here
+ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|\.a)$'
+ ;;
+
+irix5* | irix6* | nonstopux*)
+ case $LD in
+ *-32|*"-32 ") libmagic=32-bit;;
+ *-n32|*"-n32 ") libmagic=N32;;
+ *-64|*"-64 ") libmagic=64-bit;;
+ *) libmagic=never-match;;
+ esac
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+# This must be Linux ELF.
+linux* | k*bsd*-gnu)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then
+ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$'
+ else
+ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so|_pic\.a)$'
+ fi
+ ;;
+
+newos6*)
+ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (executable|dynamic lib)'
+ lt_cv_file_magic_cmd=/usr/bin/file
+ lt_cv_file_magic_test_file=/usr/lib/libnls.so
+ ;;
+
+*nto* | *qnx*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+openbsd*)
+ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|\.so|_pic\.a)$'
+ else
+ lt_cv_deplibs_check_method='match_pattern /lib[^/]+(\.so\.[0-9]+\.[0-9]+|_pic\.a)$'
+ fi
+ ;;
+
+osf3* | osf4* | osf5*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+rdos*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+solaris*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+sysv4 | sysv4.3*)
+ case $host_vendor in
+ motorola)
+ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [ML]SB (shared object|dynamic lib) M[0-9][0-9]* Version [0-9]'
+ lt_cv_file_magic_test_file=`echo /usr/lib/libc.so*`
+ ;;
+ ncr)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+ sequent)
+ lt_cv_file_magic_cmd='/bin/file'
+ lt_cv_deplibs_check_method='file_magic ELF [0-9][0-9]*-bit [LM]SB (shared object|dynamic lib )'
+ ;;
+ sni)
+ lt_cv_file_magic_cmd='/bin/file'
+ lt_cv_deplibs_check_method="file_magic ELF [0-9][0-9]*-bit [LM]SB dynamic lib"
+ lt_cv_file_magic_test_file=/lib/libc.so
+ ;;
+ siemens)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+ pc)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+ esac
+ ;;
+
+tpf*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+esac
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_deplibs_check_method" >&5
+$as_echo "$lt_cv_deplibs_check_method" >&6; }
+file_magic_cmd=$lt_cv_file_magic_cmd
+deplibs_check_method=$lt_cv_deplibs_check_method
+test -z "$deplibs_check_method" && deplibs_check_method=unknown
+
+
+
+
+
+
+
+
+
+
+
+
+if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}ar", so it can be a program name with args.
+set dummy ${ac_tool_prefix}ar; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_AR+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$AR"; then
+ ac_cv_prog_AR="$AR" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_AR="${ac_tool_prefix}ar"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+AR=$ac_cv_prog_AR
+if test -n "$AR"; then
+ { $as_echo "$as_me:$LINENO: result: $AR" >&5
+$as_echo "$AR" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_AR"; then
+ ac_ct_AR=$AR
+ # Extract the first word of "ar", so it can be a program name with args.
+set dummy ar; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_AR+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_AR"; then
+ ac_cv_prog_ac_ct_AR="$ac_ct_AR" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_AR="ar"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_AR=$ac_cv_prog_ac_ct_AR
+if test -n "$ac_ct_AR"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_AR" >&5
+$as_echo "$ac_ct_AR" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_AR" = x; then
+ AR="false"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ AR=$ac_ct_AR
+ fi
+else
+ AR="$ac_cv_prog_AR"
+fi
+
+test -z "$AR" && AR=ar
+test -z "$AR_FLAGS" && AR_FLAGS=cru
+
+
+
+
+
+
+
+
+
+
+
+if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.
+set dummy ${ac_tool_prefix}strip; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_STRIP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$STRIP"; then
+ ac_cv_prog_STRIP="$STRIP" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_STRIP="${ac_tool_prefix}strip"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+STRIP=$ac_cv_prog_STRIP
+if test -n "$STRIP"; then
+ { $as_echo "$as_me:$LINENO: result: $STRIP" >&5
+$as_echo "$STRIP" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_STRIP"; then
+ ac_ct_STRIP=$STRIP
+ # Extract the first word of "strip", so it can be a program name with args.
+set dummy strip; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_STRIP"; then
+ ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_STRIP="strip"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP
+if test -n "$ac_ct_STRIP"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5
+$as_echo "$ac_ct_STRIP" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_STRIP" = x; then
+ STRIP=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ STRIP=$ac_ct_STRIP
+ fi
+else
+ STRIP="$ac_cv_prog_STRIP"
+fi
+
+test -z "$STRIP" && STRIP=:
+
+
+
+
+
+
+if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
+set dummy ${ac_tool_prefix}ranlib; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_RANLIB+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$RANLIB"; then
+ ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+RANLIB=$ac_cv_prog_RANLIB
+if test -n "$RANLIB"; then
+ { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5
+$as_echo "$RANLIB" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_RANLIB"; then
+ ac_ct_RANLIB=$RANLIB
+ # Extract the first word of "ranlib", so it can be a program name with args.
+set dummy ranlib; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_RANLIB"; then
+ ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_RANLIB="ranlib"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
+if test -n "$ac_ct_RANLIB"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
+$as_echo "$ac_ct_RANLIB" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_RANLIB" = x; then
+ RANLIB=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ RANLIB=$ac_ct_RANLIB
+ fi
+else
+ RANLIB="$ac_cv_prog_RANLIB"
+fi
+
+test -z "$RANLIB" && RANLIB=:
+
+
+
+
+
+
+# Determine commands to create old-style static archives.
+old_archive_cmds='$AR $AR_FLAGS $oldlib$oldobjs'
+old_postinstall_cmds='chmod 644 $oldlib'
+old_postuninstall_cmds=
+
+if test -n "$RANLIB"; then
+ case $host_os in
+ openbsd*)
+ old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$oldlib"
+ ;;
+ *)
+ old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$oldlib"
+ ;;
+ esac
+ old_archive_cmds="$old_archive_cmds~\$RANLIB \$oldlib"
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+# If no C compiler was specified, use CC.
+LTCC=${LTCC-"$CC"}
+
+# If no C compiler flags were specified, use CFLAGS.
+LTCFLAGS=${LTCFLAGS-"$CFLAGS"}
+
+# Allow CC to be a program name with arguments.
+compiler=$CC
+
+
+# Check for command to grab the raw symbol name followed by C symbol from nm.
+{ $as_echo "$as_me:$LINENO: checking command to parse $NM output from $compiler object" >&5
+$as_echo_n "checking command to parse $NM output from $compiler object... " >&6; }
+if test "${lt_cv_sys_global_symbol_pipe+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+
+# These are sane defaults that work on at least a few old systems.
+# [They come from Ultrix. What could be older than Ultrix?!! ;)]
+
+# Character class describing NM global symbol codes.
+symcode='[BCDEGRST]'
+
+# Regexp to match symbols that can be accessed directly from C.
+sympat='\([_A-Za-z][_A-Za-z0-9]*\)'
+
+# Define system-specific variables.
+case $host_os in
+aix*)
+ symcode='[BCDT]'
+ ;;
+cygwin* | mingw* | pw32* | cegcc*)
+ symcode='[ABCDGISTW]'
+ ;;
+hpux*)
+ if test "$host_cpu" = ia64; then
+ symcode='[ABCDEGRST]'
+ fi
+ ;;
+irix* | nonstopux*)
+ symcode='[BCDEGRST]'
+ ;;
+osf*)
+ symcode='[BCDEGQRST]'
+ ;;
+solaris*)
+ symcode='[BDRT]'
+ ;;
+sco3.2v5*)
+ symcode='[DT]'
+ ;;
+sysv4.2uw2*)
+ symcode='[DT]'
+ ;;
+sysv5* | sco5v6* | unixware* | OpenUNIX*)
+ symcode='[ABDT]'
+ ;;
+sysv4)
+ symcode='[DFNSTU]'
+ ;;
+esac
+
+# If we're using GNU nm, then use its standard symbol codes.
+case `$NM -V 2>&1` in
+*GNU* | *'with BFD'*)
+ symcode='[ABCDGIRSTW]' ;;
+esac
+
+# Transform an extracted symbol line into a proper C declaration.
+# Some systems (esp. on ia64) link data and code symbols differently,
+# so use this general approach.
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
+
+# Transform an extracted symbol line into symbol name and symbol address
+lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"\2\", (void *) \&\2},/p'"
+lt_cv_sys_global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \([^ ]*\) $/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([^ ]*\) \(lib[^ ]*\)$/ {\"\2\", (void *) \&\2},/p' -e 's/^$symcode* \([^ ]*\) \([^ ]*\)$/ {\"lib\2\", (void *) \&\2},/p'"
+
+# Handle CRLF in mingw tool chain
+opt_cr=
+case $build_os in
+mingw*)
+ opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp
+ ;;
+esac
+
+# Try without a prefix underscore, then with it.
+for ac_symprfx in "" "_"; do
+
+ # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol.
+ symxfrm="\\1 $ac_symprfx\\2 \\2"
+
+ # Write the raw and C identifiers.
+ if test "$lt_cv_nm_interface" = "MS dumpbin"; then
+ # Fake it for dumpbin and say T for any non-static function
+ # and D for any global variable.
+ # Also find C++ and __fastcall symbols from MSVC++,
+ # which start with @ or ?.
+ lt_cv_sys_global_symbol_pipe="$AWK '"\
+" {last_section=section; section=\$ 3};"\
+" /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\
+" \$ 0!~/External *\|/{next};"\
+" / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\
+" {if(hide[section]) next};"\
+" {f=0}; \$ 0~/\(\).*\|/{f=1}; {printf f ? \"T \" : \"D \"};"\
+" {split(\$ 0, a, /\||\r/); split(a[2], s)};"\
+" s[1]~/^[@?]/{print s[1], s[1]; next};"\
+" s[1]~prfx {split(s[1],t,\"@\"); print t[1], substr(t[1],length(prfx))}"\
+" ' prfx=^$ac_symprfx"
+ else
+ lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[ ]\($symcode$symcode*\)[ ][ ]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'"
+ fi
+
+ # Check to see that the pipe works correctly.
+ pipe_works=no
+
+ rm -f conftest*
+ cat > conftest.$ac_ext <<_LT_EOF
+#ifdef __cplusplus
+extern "C" {
+#endif
+char nm_test_var;
+void nm_test_func(void);
+void nm_test_func(void){}
+#ifdef __cplusplus
+}
+#endif
+int main(){nm_test_var='a';nm_test_func();return(0);}
+_LT_EOF
+
+ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ # Now try to grab the symbols.
+ nlist=conftest.nm
+ if { (eval echo "$as_me:$LINENO: \"$NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist\"") >&5
+ (eval $NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && test -s "$nlist"; then
+ # Try sorting and uniquifying the output.
+ if sort "$nlist" | uniq > "$nlist"T; then
+ mv -f "$nlist"T "$nlist"
+ else
+ rm -f "$nlist"T
+ fi
+
+ # Make sure that we snagged all the symbols we need.
+ if $GREP ' nm_test_var$' "$nlist" >/dev/null; then
+ if $GREP ' nm_test_func$' "$nlist" >/dev/null; then
+ cat <<_LT_EOF > conftest.$ac_ext
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+_LT_EOF
+ # Now generate the symbol file.
+ eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | $GREP -v main >> conftest.$ac_ext'
+
+ cat <<_LT_EOF >> conftest.$ac_ext
+
+/* The mapping between symbol names and symbols. */
+const struct {
+ const char *name;
+ void *address;
+}
+lt__PROGRAM__LTX_preloaded_symbols[] =
+{
+ { "@PROGRAM@", (void *) 0 },
+_LT_EOF
+ $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (void *) \&\2},/" < "$nlist" | $GREP -v main >> conftest.$ac_ext
+ cat <<\_LT_EOF >> conftest.$ac_ext
+ {0, (void *) 0}
+};
+
+/* This works around a problem in FreeBSD linker */
+#ifdef FREEBSD_WORKAROUND
+static const void *lt_preloaded_setup() {
+ return lt__PROGRAM__LTX_preloaded_symbols;
+}
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+_LT_EOF
+ # Now try linking the two files.
+ mv conftest.$ac_objext conftstm.$ac_objext
+ lt_save_LIBS="$LIBS"
+ lt_save_CFLAGS="$CFLAGS"
+ LIBS="conftstm.$ac_objext"
+ CFLAGS="$CFLAGS$lt_prog_compiler_no_builtin_flag"
+ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+ (eval $ac_link) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && test -s conftest${ac_exeext}; then
+ pipe_works=yes
+ fi
+ LIBS="$lt_save_LIBS"
+ CFLAGS="$lt_save_CFLAGS"
+ else
+ echo "cannot find nm_test_func in $nlist" >&5
+ fi
+ else
+ echo "cannot find nm_test_var in $nlist" >&5
+ fi
+ else
+ echo "cannot run $lt_cv_sys_global_symbol_pipe" >&5
+ fi
+ else
+ echo "$progname: failed program was:" >&5
+ cat conftest.$ac_ext >&5
+ fi
+ rm -rf conftest* conftst*
+
+ # Do not use the global_symbol_pipe unless it works.
+ if test "$pipe_works" = yes; then
+ break
+ else
+ lt_cv_sys_global_symbol_pipe=
+ fi
+done
+
+fi
+
+if test -z "$lt_cv_sys_global_symbol_pipe"; then
+ lt_cv_sys_global_symbol_to_cdecl=
+fi
+if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then
+ { $as_echo "$as_me:$LINENO: result: failed" >&5
+$as_echo "failed" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: ok" >&5
+$as_echo "ok" >&6; }
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+# Check whether --enable-libtool-lock was given.
+if test "${enable_libtool_lock+set}" = set; then
+ enableval=$enable_libtool_lock;
+fi
+
+test "x$enable_libtool_lock" != xno && enable_libtool_lock=yes
+
+# Some flags need to be propagated to the compiler or linker for good
+# libtool support.
+case $host in
+ia64-*-hpux*)
+ # Find out which ABI we are using.
+ echo 'int i;' > conftest.$ac_ext
+ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ case `/usr/bin/file conftest.$ac_objext` in
+ *ELF-32*)
+ HPUX_IA64_MODE="32"
+ ;;
+ *ELF-64*)
+ HPUX_IA64_MODE="64"
+ ;;
+ esac
+ fi
+ rm -rf conftest*
+ ;;
+*-*-irix6*)
+ # Find out which ABI we are using.
+ echo '#line 6148 "configure"' > conftest.$ac_ext
+ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ if test "$lt_cv_prog_gnu_ld" = yes; then
+ case `/usr/bin/file conftest.$ac_objext` in
+ *32-bit*)
+ LD="${LD-ld} -melf32bsmip"
+ ;;
+ *N32*)
+ LD="${LD-ld} -melf32bmipn32"
+ ;;
+ *64-bit*)
+ LD="${LD-ld} -melf64bmip"
+ ;;
+ esac
+ else
+ case `/usr/bin/file conftest.$ac_objext` in
+ *32-bit*)
+ LD="${LD-ld} -32"
+ ;;
+ *N32*)
+ LD="${LD-ld} -n32"
+ ;;
+ *64-bit*)
+ LD="${LD-ld} -64"
+ ;;
+ esac
+ fi
+ fi
+ rm -rf conftest*
+ ;;
+
+x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \
+s390*-*linux*|s390*-*tpf*|sparc*-*linux*)
+ # Find out which ABI we are using.
+ echo 'int i;' > conftest.$ac_ext
+ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ case `/usr/bin/file conftest.o` in
+ *32-bit*)
+ case $host in
+ x86_64-*kfreebsd*-gnu)
+ LD="${LD-ld} -m elf_i386_fbsd"
+ ;;
+ x86_64-*linux*)
+ LD="${LD-ld} -m elf_i386"
+ ;;
+ ppc64-*linux*|powerpc64-*linux*)
+ LD="${LD-ld} -m elf32ppclinux"
+ ;;
+ s390x-*linux*)
+ LD="${LD-ld} -m elf_s390"
+ ;;
+ sparc64-*linux*)
+ LD="${LD-ld} -m elf32_sparc"
+ ;;
+ esac
+ ;;
+ *64-bit*)
+ case $host in
+ x86_64-*kfreebsd*-gnu)
+ LD="${LD-ld} -m elf_x86_64_fbsd"
+ ;;
+ x86_64-*linux*)
+ LD="${LD-ld} -m elf_x86_64"
+ ;;
+ ppc*-*linux*|powerpc*-*linux*)
+ LD="${LD-ld} -m elf64ppc"
+ ;;
+ s390*-*linux*|s390*-*tpf*)
+ LD="${LD-ld} -m elf64_s390"
+ ;;
+ sparc*-*linux*)
+ LD="${LD-ld} -m elf64_sparc"
+ ;;
+ esac
+ ;;
+ esac
+ fi
+ rm -rf conftest*
+ ;;
+
+*-*-sco3.2v5*)
+ # On SCO OpenServer 5, we need -belf to get full-featured binaries.
+ SAVE_CFLAGS="$CFLAGS"
+ CFLAGS="$CFLAGS -belf"
+ { $as_echo "$as_me:$LINENO: checking whether the C compiler needs -belf" >&5
+$as_echo_n "checking whether the C compiler needs -belf... " >&6; }
+if test "${lt_cv_cc_needs_belf+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ lt_cv_cc_needs_belf=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lt_cv_cc_needs_belf=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_cc_needs_belf" >&5
+$as_echo "$lt_cv_cc_needs_belf" >&6; }
+ if test x"$lt_cv_cc_needs_belf" != x"yes"; then
+ # this is probably gcc 2.8.0, egcs 1.0 or newer; no need for -belf
+ CFLAGS="$SAVE_CFLAGS"
+ fi
+ ;;
+sparc*-*solaris*)
+ # Find out which ABI we are using.
+ echo 'int i;' > conftest.$ac_ext
+ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ case `/usr/bin/file conftest.o` in
+ *64-bit*)
+ case $lt_cv_prog_gnu_ld in
+ yes*) LD="${LD-ld} -m elf64_sparc" ;;
+ *)
+ if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then
+ LD="${LD-ld} -64"
+ fi
+ ;;
+ esac
+ ;;
+ esac
+ fi
+ rm -rf conftest*
+ ;;
+esac
+
+need_locks="$enable_libtool_lock"
+
+
+ case $host_os in
+ rhapsody* | darwin*)
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}dsymutil", so it can be a program name with args.
+set dummy ${ac_tool_prefix}dsymutil; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_DSYMUTIL+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$DSYMUTIL"; then
+ ac_cv_prog_DSYMUTIL="$DSYMUTIL" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_DSYMUTIL="${ac_tool_prefix}dsymutil"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+DSYMUTIL=$ac_cv_prog_DSYMUTIL
+if test -n "$DSYMUTIL"; then
+ { $as_echo "$as_me:$LINENO: result: $DSYMUTIL" >&5
+$as_echo "$DSYMUTIL" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_DSYMUTIL"; then
+ ac_ct_DSYMUTIL=$DSYMUTIL
+ # Extract the first word of "dsymutil", so it can be a program name with args.
+set dummy dsymutil; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_DSYMUTIL+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_DSYMUTIL"; then
+ ac_cv_prog_ac_ct_DSYMUTIL="$ac_ct_DSYMUTIL" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_DSYMUTIL="dsymutil"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_DSYMUTIL=$ac_cv_prog_ac_ct_DSYMUTIL
+if test -n "$ac_ct_DSYMUTIL"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_DSYMUTIL" >&5
+$as_echo "$ac_ct_DSYMUTIL" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_DSYMUTIL" = x; then
+ DSYMUTIL=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ DSYMUTIL=$ac_ct_DSYMUTIL
+ fi
+else
+ DSYMUTIL="$ac_cv_prog_DSYMUTIL"
+fi
+
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}nmedit", so it can be a program name with args.
+set dummy ${ac_tool_prefix}nmedit; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_NMEDIT+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$NMEDIT"; then
+ ac_cv_prog_NMEDIT="$NMEDIT" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_NMEDIT="${ac_tool_prefix}nmedit"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+NMEDIT=$ac_cv_prog_NMEDIT
+if test -n "$NMEDIT"; then
+ { $as_echo "$as_me:$LINENO: result: $NMEDIT" >&5
+$as_echo "$NMEDIT" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_NMEDIT"; then
+ ac_ct_NMEDIT=$NMEDIT
+ # Extract the first word of "nmedit", so it can be a program name with args.
+set dummy nmedit; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_NMEDIT+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_NMEDIT"; then
+ ac_cv_prog_ac_ct_NMEDIT="$ac_ct_NMEDIT" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_NMEDIT="nmedit"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_NMEDIT=$ac_cv_prog_ac_ct_NMEDIT
+if test -n "$ac_ct_NMEDIT"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_NMEDIT" >&5
+$as_echo "$ac_ct_NMEDIT" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_NMEDIT" = x; then
+ NMEDIT=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ NMEDIT=$ac_ct_NMEDIT
+ fi
+else
+ NMEDIT="$ac_cv_prog_NMEDIT"
+fi
+
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}lipo", so it can be a program name with args.
+set dummy ${ac_tool_prefix}lipo; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_LIPO+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$LIPO"; then
+ ac_cv_prog_LIPO="$LIPO" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_LIPO="${ac_tool_prefix}lipo"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+LIPO=$ac_cv_prog_LIPO
+if test -n "$LIPO"; then
+ { $as_echo "$as_me:$LINENO: result: $LIPO" >&5
+$as_echo "$LIPO" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_LIPO"; then
+ ac_ct_LIPO=$LIPO
+ # Extract the first word of "lipo", so it can be a program name with args.
+set dummy lipo; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_LIPO+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_LIPO"; then
+ ac_cv_prog_ac_ct_LIPO="$ac_ct_LIPO" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_LIPO="lipo"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_LIPO=$ac_cv_prog_ac_ct_LIPO
+if test -n "$ac_ct_LIPO"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_LIPO" >&5
+$as_echo "$ac_ct_LIPO" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_LIPO" = x; then
+ LIPO=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ LIPO=$ac_ct_LIPO
+ fi
+else
+ LIPO="$ac_cv_prog_LIPO"
+fi
+
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}otool", so it can be a program name with args.
+set dummy ${ac_tool_prefix}otool; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_OTOOL+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$OTOOL"; then
+ ac_cv_prog_OTOOL="$OTOOL" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_OTOOL="${ac_tool_prefix}otool"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+OTOOL=$ac_cv_prog_OTOOL
+if test -n "$OTOOL"; then
+ { $as_echo "$as_me:$LINENO: result: $OTOOL" >&5
+$as_echo "$OTOOL" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_OTOOL"; then
+ ac_ct_OTOOL=$OTOOL
+ # Extract the first word of "otool", so it can be a program name with args.
+set dummy otool; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_OTOOL+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_OTOOL"; then
+ ac_cv_prog_ac_ct_OTOOL="$ac_ct_OTOOL" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_OTOOL="otool"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_OTOOL=$ac_cv_prog_ac_ct_OTOOL
+if test -n "$ac_ct_OTOOL"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_OTOOL" >&5
+$as_echo "$ac_ct_OTOOL" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_OTOOL" = x; then
+ OTOOL=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ OTOOL=$ac_ct_OTOOL
+ fi
+else
+ OTOOL="$ac_cv_prog_OTOOL"
+fi
+
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}otool64", so it can be a program name with args.
+set dummy ${ac_tool_prefix}otool64; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_OTOOL64+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$OTOOL64"; then
+ ac_cv_prog_OTOOL64="$OTOOL64" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_OTOOL64="${ac_tool_prefix}otool64"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+OTOOL64=$ac_cv_prog_OTOOL64
+if test -n "$OTOOL64"; then
+ { $as_echo "$as_me:$LINENO: result: $OTOOL64" >&5
+$as_echo "$OTOOL64" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_OTOOL64"; then
+ ac_ct_OTOOL64=$OTOOL64
+ # Extract the first word of "otool64", so it can be a program name with args.
+set dummy otool64; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_OTOOL64+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_OTOOL64"; then
+ ac_cv_prog_ac_ct_OTOOL64="$ac_ct_OTOOL64" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_OTOOL64="otool64"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_OTOOL64=$ac_cv_prog_ac_ct_OTOOL64
+if test -n "$ac_ct_OTOOL64"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_OTOOL64" >&5
+$as_echo "$ac_ct_OTOOL64" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_OTOOL64" = x; then
+ OTOOL64=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ OTOOL64=$ac_ct_OTOOL64
+ fi
+else
+ OTOOL64="$ac_cv_prog_OTOOL64"
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking for -single_module linker flag" >&5
+$as_echo_n "checking for -single_module linker flag... " >&6; }
+if test "${lt_cv_apple_cc_single_mod+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_apple_cc_single_mod=no
+ if test -z "${LT_MULTI_MODULE}"; then
+ # By default we will add the -single_module flag. You can override
+ # by either setting the environment variable LT_MULTI_MODULE
+ # non-empty at configure time, or by adding -multi_module to the
+ # link flags.
+ rm -rf libconftest.dylib*
+ echo "int foo(void){return 1;}" > conftest.c
+ echo "$LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \
+-dynamiclib -Wl,-single_module conftest.c" >&5
+ $LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \
+ -dynamiclib -Wl,-single_module conftest.c 2>conftest.err
+ _lt_result=$?
+ if test -f libconftest.dylib && test ! -s conftest.err && test $_lt_result = 0; then
+ lt_cv_apple_cc_single_mod=yes
+ else
+ cat conftest.err >&5
+ fi
+ rm -rf libconftest.dylib*
+ rm -f conftest.*
+ fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_apple_cc_single_mod" >&5
+$as_echo "$lt_cv_apple_cc_single_mod" >&6; }
+ { $as_echo "$as_me:$LINENO: checking for -exported_symbols_list linker flag" >&5
+$as_echo_n "checking for -exported_symbols_list linker flag... " >&6; }
+if test "${lt_cv_ld_exported_symbols_list+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_ld_exported_symbols_list=no
+ save_LDFLAGS=$LDFLAGS
+ echo "_main" > conftest.sym
+ LDFLAGS="$LDFLAGS -Wl,-exported_symbols_list,conftest.sym"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ lt_cv_ld_exported_symbols_list=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lt_cv_ld_exported_symbols_list=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ LDFLAGS="$save_LDFLAGS"
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_ld_exported_symbols_list" >&5
+$as_echo "$lt_cv_ld_exported_symbols_list" >&6; }
+ case $host_os in
+ rhapsody* | darwin1.[012])
+ _lt_dar_allow_undefined='${wl}-undefined ${wl}suppress' ;;
+ darwin1.*)
+ _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;;
+ darwin*) # darwin 5.x on
+ # if running on 10.5 or later, the deployment target defaults
+ # to the OS version, if on x86, and 10.4, the deployment
+ # target defaults to 10.4. Don't you love it?
+ case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in
+ 10.0,*86*-darwin8*|10.0,*-darwin[91]*)
+ _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;;
+ 10.[012]*)
+ _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;;
+ 10.*)
+ _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;;
+ esac
+ ;;
+ esac
+ if test "$lt_cv_apple_cc_single_mod" = "yes"; then
+ _lt_dar_single_mod='$single_module'
+ fi
+ if test "$lt_cv_ld_exported_symbols_list" = "yes"; then
+ _lt_dar_export_syms=' ${wl}-exported_symbols_list,$output_objdir/${libname}-symbols.expsym'
+ else
+ _lt_dar_export_syms='~$NMEDIT -s $output_objdir/${libname}-symbols.expsym ${lib}'
+ fi
+ if test "$DSYMUTIL" != ":"; then
+ _lt_dsymutil='~$DSYMUTIL $lib || :'
+ else
+ _lt_dsymutil=
+ fi
+ ;;
+ esac
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+{ $as_echo "$as_me:$LINENO: checking how to run the C preprocessor" >&5
+$as_echo_n "checking how to run the C preprocessor... " >&6; }
+# On Suns, sometimes $CPP names a directory.
+if test -n "$CPP" && test -d "$CPP"; then
+ CPP=
+fi
+if test -z "$CPP"; then
+ if test "${ac_cv_prog_CPP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ # Double quotes because CPP needs to be expanded
+ for CPP in "$CC -E" "$CC -E -traditional-cpp" "/lib/cpp"
+ do
+ ac_preproc_ok=false
+for ac_c_preproc_warn_flag in '' yes
+do
+ # Use a header file that comes with gcc, so configuring glibc
+ # with a fresh cross-compiler works.
+ # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ # <limits.h> exists even on freestanding compilers.
+ # On the NeXT, cc -E runs the code through the compiler's parser,
+ # not just through cpp. "Syntax error" is here to catch this case.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+ Syntax error
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Broken: fails on valid input.
+continue
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ac_nonexistent.h>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ # Broken: success on invalid input.
+continue
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Passes both tests.
+ac_preproc_ok=:
+break
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+done
+# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
+rm -f conftest.err conftest.$ac_ext
+if $ac_preproc_ok; then
+ break
+fi
+
+ done
+ ac_cv_prog_CPP=$CPP
+
+fi
+ CPP=$ac_cv_prog_CPP
+else
+ ac_cv_prog_CPP=$CPP
+fi
+{ $as_echo "$as_me:$LINENO: result: $CPP" >&5
+$as_echo "$CPP" >&6; }
+ac_preproc_ok=false
+for ac_c_preproc_warn_flag in '' yes
+do
+ # Use a header file that comes with gcc, so configuring glibc
+ # with a fresh cross-compiler works.
+ # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ # <limits.h> exists even on freestanding compilers.
+ # On the NeXT, cc -E runs the code through the compiler's parser,
+ # not just through cpp. "Syntax error" is here to catch this case.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+ Syntax error
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Broken: fails on valid input.
+continue
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ac_nonexistent.h>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ # Broken: success on invalid input.
+continue
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Passes both tests.
+ac_preproc_ok=:
+break
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+done
+# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
+rm -f conftest.err conftest.$ac_ext
+if $ac_preproc_ok; then
+ :
+else
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+{ { $as_echo "$as_me:$LINENO: error: C preprocessor \"$CPP\" fails sanity check
+See \`config.log' for more details." >&5
+$as_echo "$as_me: error: C preprocessor \"$CPP\" fails sanity check
+See \`config.log' for more details." >&2;}
+ { (exit 1); exit 1; }; }; }
+fi
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+{ $as_echo "$as_me:$LINENO: checking for ANSI C header files" >&5
+$as_echo_n "checking for ANSI C header files... " >&6; }
+if test "${ac_cv_header_stdc+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <stdlib.h>
+#include <stdarg.h>
+#include <string.h>
+#include <float.h>
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_header_stdc=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_header_stdc=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+if test $ac_cv_header_stdc = yes; then
+ # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <string.h>
+
+_ACEOF
+if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
+ $EGREP "memchr" >/dev/null 2>&1; then
+ :
+else
+ ac_cv_header_stdc=no
+fi
+rm -f conftest*
+
+fi
+
+if test $ac_cv_header_stdc = yes; then
+ # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <stdlib.h>
+
+_ACEOF
+if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
+ $EGREP "free" >/dev/null 2>&1; then
+ :
+else
+ ac_cv_header_stdc=no
+fi
+rm -f conftest*
+
+fi
+
+if test $ac_cv_header_stdc = yes; then
+ # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi.
+ if test "$cross_compiling" = yes; then
+ :
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ctype.h>
+#include <stdlib.h>
+#if ((' ' & 0x0FF) == 0x020)
+# define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
+# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
+#else
+# define ISLOWER(c) \
+ (('a' <= (c) && (c) <= 'i') \
+ || ('j' <= (c) && (c) <= 'r') \
+ || ('s' <= (c) && (c) <= 'z'))
+# define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
+#endif
+
+#define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
+int
+main ()
+{
+ int i;
+ for (i = 0; i < 256; i++)
+ if (XOR (islower (i), ISLOWER (i))
+ || toupper (i) != TOUPPER (i))
+ return 2;
+ return 0;
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ :
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_header_stdc=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
+$as_echo "$ac_cv_header_stdc" >&6; }
+if test $ac_cv_header_stdc = yes; then
+
+cat >>confdefs.h <<\_ACEOF
+#define STDC_HEADERS 1
+_ACEOF
+
+fi
+
+# On IRIX 5.3, sys/types and inttypes.h are conflicting.
+
+
+
+
+
+
+
+
+
+for ac_header in sys/types.h sys/stat.h stdlib.h string.h memory.h strings.h \
+ inttypes.h stdint.h unistd.h
+do
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ eval "$as_ac_Header=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Header=no"
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+
+
+for ac_header in dlfcn.h
+do
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ eval "$as_ac_Header=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Header=no"
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+
+
+ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+if test -z "$CXX"; then
+ if test -n "$CCC"; then
+ CXX=$CCC
+ else
+ if test -n "$ac_tool_prefix"; then
+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CXX"; then
+ ac_cv_prog_CXX="$CXX" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CXX="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+CXX=$ac_cv_prog_CXX
+if test -n "$CXX"; then
+ { $as_echo "$as_me:$LINENO: result: $CXX" >&5
+$as_echo "$CXX" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$CXX" && break
+ done
+fi
+if test -z "$CXX"; then
+ ac_ct_CXX=$CXX
+ for ac_prog in g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC xlC_r xlC
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CXX"; then
+ ac_cv_prog_ac_ct_CXX="$ac_ct_CXX" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CXX="$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CXX=$ac_cv_prog_ac_ct_CXX
+if test -n "$ac_ct_CXX"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_CXX" >&5
+$as_echo "$ac_ct_CXX" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_CXX" && break
+done
+
+ if test "x$ac_ct_CXX" = x; then
+ CXX="g++"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CXX=$ac_ct_CXX
+ fi
+fi
+
+ fi
+fi
+# Provide some information about the compiler.
+$as_echo "$as_me:$LINENO: checking for C++ compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+{ (ac_try="$ac_compiler --version >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler --version >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+{ (ac_try="$ac_compiler -v >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -v >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+{ (ac_try="$ac_compiler -V >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compiler -V >&5") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+
+{ $as_echo "$as_me:$LINENO: checking whether we are using the GNU C++ compiler" >&5
+$as_echo_n "checking whether we are using the GNU C++ compiler... " >&6; }
+if test "${ac_cv_cxx_compiler_gnu+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+#ifndef __GNUC__
+ choke me
+#endif
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_compiler_gnu=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_compiler_gnu=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ac_cv_cxx_compiler_gnu=$ac_compiler_gnu
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_cxx_compiler_gnu" >&5
+$as_echo "$ac_cv_cxx_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+ GXX=yes
+else
+ GXX=
+fi
+ac_test_CXXFLAGS=${CXXFLAGS+set}
+ac_save_CXXFLAGS=$CXXFLAGS
+{ $as_echo "$as_me:$LINENO: checking whether $CXX accepts -g" >&5
+$as_echo_n "checking whether $CXX accepts -g... " >&6; }
+if test "${ac_cv_prog_cxx_g+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_save_cxx_werror_flag=$ac_cxx_werror_flag
+ ac_cxx_werror_flag=yes
+ ac_cv_prog_cxx_g=no
+ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cxx_g=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ CXXFLAGS=""
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
+ CXXFLAGS="-g"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_prog_cxx_g=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_cxx_werror_flag=$ac_save_cxx_werror_flag
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_prog_cxx_g" >&5
+$as_echo "$ac_cv_prog_cxx_g" >&6; }
+if test "$ac_test_CXXFLAGS" = set; then
+ CXXFLAGS=$ac_save_CXXFLAGS
+elif test $ac_cv_prog_cxx_g = yes; then
+ if test "$GXX" = yes; then
+ CXXFLAGS="-g -O2"
+ else
+ CXXFLAGS="-g"
+ fi
+else
+ if test "$GXX" = yes; then
+ CXXFLAGS="-O2"
+ else
+ CXXFLAGS=
+ fi
+fi
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+if test -n "$CXX" && ( test "X$CXX" != "Xno" &&
+ ( (test "X$CXX" = "Xg++" && `g++ -v >/dev/null 2>&1` ) ||
+ (test "X$CXX" != "Xg++"))) ; then
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+{ $as_echo "$as_me:$LINENO: checking how to run the C++ preprocessor" >&5
+$as_echo_n "checking how to run the C++ preprocessor... " >&6; }
+if test -z "$CXXCPP"; then
+ if test "${ac_cv_prog_CXXCPP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ # Double quotes because CXXCPP needs to be expanded
+ for CXXCPP in "$CXX -E" "/lib/cpp"
+ do
+ ac_preproc_ok=false
+for ac_cxx_preproc_warn_flag in '' yes
+do
+ # Use a header file that comes with gcc, so configuring glibc
+ # with a fresh cross-compiler works.
+ # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ # <limits.h> exists even on freestanding compilers.
+ # On the NeXT, cc -E runs the code through the compiler's parser,
+ # not just through cpp. "Syntax error" is here to catch this case.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+ Syntax error
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Broken: fails on valid input.
+continue
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ac_nonexistent.h>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ # Broken: success on invalid input.
+continue
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Passes both tests.
+ac_preproc_ok=:
+break
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+done
+# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
+rm -f conftest.err conftest.$ac_ext
+if $ac_preproc_ok; then
+ break
+fi
+
+ done
+ ac_cv_prog_CXXCPP=$CXXCPP
+
+fi
+ CXXCPP=$ac_cv_prog_CXXCPP
+else
+ ac_cv_prog_CXXCPP=$CXXCPP
+fi
+{ $as_echo "$as_me:$LINENO: result: $CXXCPP" >&5
+$as_echo "$CXXCPP" >&6; }
+ac_preproc_ok=false
+for ac_cxx_preproc_warn_flag in '' yes
+do
+ # Use a header file that comes with gcc, so configuring glibc
+ # with a fresh cross-compiler works.
+ # Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ # <limits.h> exists even on freestanding compilers.
+ # On the NeXT, cc -E runs the code through the compiler's parser,
+ # not just through cpp. "Syntax error" is here to catch this case.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+ Syntax error
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Broken: fails on valid input.
+continue
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+ # OK, works on sane cases. Now check whether nonexistent headers
+ # can be detected and how.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ac_nonexistent.h>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_cxx_preproc_warn_flag$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ # Broken: success on invalid input.
+continue
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ # Passes both tests.
+ac_preproc_ok=:
+break
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+done
+# Because of `break', _AC_PREPROC_IFELSE's cleaning code was skipped.
+rm -f conftest.err conftest.$ac_ext
+if $ac_preproc_ok; then
+ :
+else
+ { { $as_echo "$as_me:$LINENO: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+_lt_caught_CXX_error=yes; }
+fi
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+else
+ _lt_caught_CXX_error=yes
+fi
+
+
+
+
+if test "x$ac_cv_env_PKG_CONFIG_set" != "xset"; then
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}pkg-config", so it can be a program name with args.
+set dummy ${ac_tool_prefix}pkg-config; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_path_PKG_CONFIG+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ case $PKG_CONFIG in
+ [\\/]* | ?:[\\/]*)
+ ac_cv_path_PKG_CONFIG="$PKG_CONFIG" # Let the user override the test with a path.
+ ;;
+ *)
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_PKG_CONFIG="$as_dir/$ac_word$ac_exec_ext"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+ ;;
+esac
+fi
+PKG_CONFIG=$ac_cv_path_PKG_CONFIG
+if test -n "$PKG_CONFIG"; then
+ { $as_echo "$as_me:$LINENO: result: $PKG_CONFIG" >&5
+$as_echo "$PKG_CONFIG" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_path_PKG_CONFIG"; then
+ ac_pt_PKG_CONFIG=$PKG_CONFIG
+ # Extract the first word of "pkg-config", so it can be a program name with args.
+set dummy pkg-config; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_path_ac_pt_PKG_CONFIG+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ case $ac_pt_PKG_CONFIG in
+ [\\/]* | ?:[\\/]*)
+ ac_cv_path_ac_pt_PKG_CONFIG="$ac_pt_PKG_CONFIG" # Let the user override the test with a path.
+ ;;
+ *)
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_ac_pt_PKG_CONFIG="$as_dir/$ac_word$ac_exec_ext"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+ ;;
+esac
+fi
+ac_pt_PKG_CONFIG=$ac_cv_path_ac_pt_PKG_CONFIG
+if test -n "$ac_pt_PKG_CONFIG"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_pt_PKG_CONFIG" >&5
+$as_echo "$ac_pt_PKG_CONFIG" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_pt_PKG_CONFIG" = x; then
+ PKG_CONFIG=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ PKG_CONFIG=$ac_pt_PKG_CONFIG
+ fi
+else
+ PKG_CONFIG="$ac_cv_path_PKG_CONFIG"
+fi
+
+fi
+if test -n "$PKG_CONFIG"; then
+ _pkg_min_version=0.9.0
+ { $as_echo "$as_me:$LINENO: checking pkg-config is at least version $_pkg_min_version" >&5
+$as_echo_n "checking pkg-config is at least version $_pkg_min_version... " >&6; }
+ if $PKG_CONFIG --atleast-pkgconfig-version $_pkg_min_version; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ PKG_CONFIG=""
+ fi
+
+fi
+for ac_prog in gawk mawk nawk awk
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_AWK+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$AWK"; then
+ ac_cv_prog_AWK="$AWK" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_AWK="$ac_prog"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+AWK=$ac_cv_prog_AWK
+if test -n "$AWK"; then
+ { $as_echo "$as_me:$LINENO: result: $AWK" >&5
+$as_echo "$AWK" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$AWK" && break
+done
+
+
+
+
+
+for ac_header in $ac_header_list
+do
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ { $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+else
+ # Is the header compilable?
+{ $as_echo "$as_me:$LINENO: checking $ac_header usability" >&5
+$as_echo_n "checking $ac_header usability... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_header_compiler=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_compiler=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
+
+# Is the header present?
+{ $as_echo "$as_me:$LINENO: checking $ac_header presence" >&5
+$as_echo_n "checking $ac_header presence... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$ac_header>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ ac_header_preproc=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_preproc=no
+fi
+
+rm -f conftest.err conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
+
+# So? What about this header?
+case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
+ yes:no: )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
+ ac_header_preproc=yes
+ ;;
+ no:yes:* )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+$as_echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+ ( cat <<\_ASBOX
+## ------------------------------------------ ##
+## Report this to software at ritchielab.psu.edu ##
+## ------------------------------------------ ##
+_ASBOX
+ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ eval "$as_ac_Header=\$ac_header_preproc"
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+
+fi
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+
+
+
+
+
+
+
+
+for ac_func in $ac_func_list
+do
+as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
+$as_echo_n "checking for $ac_func... " >&6; }
+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define $ac_func innocuous_$ac_func
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char $ac_func (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef $ac_func
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char $ac_func ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_$ac_func || defined __stub___$ac_func
+choke me
+#endif
+
+int
+main ()
+{
+return $ac_func ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_var=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_var=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+ac_res=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+done
+
+
+
+{ $as_echo "$as_me:$LINENO: checking whether lstat dereferences a symlink specified with a trailing slash" >&5
+$as_echo_n "checking whether lstat dereferences a symlink specified with a trailing slash... " >&6; }
+if test "${ac_cv_func_lstat_dereferences_slashed_symlink+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ rm -f conftest.sym conftest.file
+echo >conftest.file
+if test "$as_ln_s" = "ln -s" && ln -s conftest.file conftest.sym; then
+ if test "$cross_compiling" = yes; then
+ ac_cv_func_lstat_dereferences_slashed_symlink=no
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+struct stat sbuf;
+ /* Linux will dereference the symlink and fail.
+ That is better in the sense that it means we will not
+ have to compile and use the lstat wrapper. */
+ return lstat ("conftest.sym/", &sbuf) == 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ ac_cv_func_lstat_dereferences_slashed_symlink=yes
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_func_lstat_dereferences_slashed_symlink=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+else
+ # If the `ln -s' command failed, then we probably don't even
+ # have an lstat function.
+ ac_cv_func_lstat_dereferences_slashed_symlink=no
+fi
+rm -f conftest.sym conftest.file
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_lstat_dereferences_slashed_symlink" >&5
+$as_echo "$ac_cv_func_lstat_dereferences_slashed_symlink" >&6; }
+
+test $ac_cv_func_lstat_dereferences_slashed_symlink = yes &&
+
+cat >>confdefs.h <<_ACEOF
+#define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
+_ACEOF
+
+
+if test $ac_cv_func_lstat_dereferences_slashed_symlink = no; then
+ case " $LIBOBJS " in
+ *" lstat.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS lstat.$ac_objext"
+ ;;
+esac
+
+fi
+
+
+
+
+
+# Checks for programs.
+# Find a good install program. We prefer a C program (faster),
+# so one script is as good as another. But avoid the broken or
+# incompatible versions:
+# SysV /etc/install, /usr/sbin/install
+# SunOS /usr/etc/install
+# IRIX /sbin/install
+# AIX /bin/install
+# AmigaOS /C/install, which installs bootblocks on floppy discs
+# AIX 4 /usr/bin/installbsd, which doesn't work without a -g flag
+# AFS /usr/afsws/bin/install, which mishandles nonexistent args
+# SVR4 /usr/ucb/install, which tries to use the nonexistent group "staff"
+# OS/2's system install, which has a completely different semantic
+# ./install, which can be erroneously created by make from ./install.sh.
+# Reject install programs that cannot install multiple files.
+{ $as_echo "$as_me:$LINENO: checking for a BSD-compatible install" >&5
+$as_echo_n "checking for a BSD-compatible install... " >&6; }
+if test -z "$INSTALL"; then
+if test "${ac_cv_path_install+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ # Account for people who put trailing slashes in PATH elements.
+case $as_dir/ in
+ ./ | .// | /cC/* | \
+ /etc/* | /usr/sbin/* | /usr/etc/* | /sbin/* | /usr/afsws/bin/* | \
+ ?:\\/os2\\/install\\/* | ?:\\/OS2\\/INSTALL\\/* | \
+ /usr/ucb/* ) ;;
+ *)
+ # OSF1 and SCO ODT 3.0 have their own names for install.
+ # Don't use installbsd from OSF since it installs stuff as root
+ # by default.
+ for ac_prog in ginstall scoinst install; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; }; then
+ if test $ac_prog = install &&
+ grep dspmsg "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
+ # AIX install. It has an incompatible calling convention.
+ :
+ elif test $ac_prog = install &&
+ grep pwplus "$as_dir/$ac_prog$ac_exec_ext" >/dev/null 2>&1; then
+ # program-specific install script used by HP pwplus--don't use.
+ :
+ else
+ rm -rf conftest.one conftest.two conftest.dir
+ echo one > conftest.one
+ echo two > conftest.two
+ mkdir conftest.dir
+ if "$as_dir/$ac_prog$ac_exec_ext" -c conftest.one conftest.two "`pwd`/conftest.dir" &&
+ test -s conftest.one && test -s conftest.two &&
+ test -s conftest.dir/conftest.one &&
+ test -s conftest.dir/conftest.two
+ then
+ ac_cv_path_install="$as_dir/$ac_prog$ac_exec_ext -c"
+ break 3
+ fi
+ fi
+ fi
+ done
+ done
+ ;;
+esac
+
+done
+IFS=$as_save_IFS
+
+rm -rf conftest.one conftest.two conftest.dir
+
+fi
+ if test "${ac_cv_path_install+set}" = set; then
+ INSTALL=$ac_cv_path_install
+ else
+ # As a last resort, use the slow shell script. Don't cache a
+ # value for INSTALL within a source directory, because that will
+ # break other packages using the cache if that directory is
+ # removed, or if the value is a relative name.
+ INSTALL=$ac_install_sh
+ fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $INSTALL" >&5
+$as_echo "$INSTALL" >&6; }
+
+# Use test -z because SunOS4 sh mishandles braces in ${var-val}.
+# It thinks the first close brace ends the variable substitution.
+test -z "$INSTALL_PROGRAM" && INSTALL_PROGRAM='${INSTALL}'
+
+test -z "$INSTALL_SCRIPT" && INSTALL_SCRIPT='${INSTALL}'
+
+test -z "$INSTALL_DATA" && INSTALL_DATA='${INSTALL} -m 644'
+
+{ $as_echo "$as_me:$LINENO: checking whether ${MAKE-make} sets \$(MAKE)" >&5
+$as_echo_n "checking whether ${MAKE-make} sets \$(MAKE)... " >&6; }
+set x ${MAKE-make}
+ac_make=`$as_echo "$2" | sed 's/+/p/g; s/[^a-zA-Z0-9_]/_/g'`
+if { as_var=ac_cv_prog_make_${ac_make}_set; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.make <<\_ACEOF
+SHELL = /bin/sh
+all:
+ @echo '@@@%%%=$(MAKE)=@@@%%%'
+_ACEOF
+# GNU make sometimes prints "make[1]: Entering...", which would confuse us.
+case `${MAKE-make} -f conftest.make 2>/dev/null` in
+ *@@@%%%=?*=@@@%%%*)
+ eval ac_cv_prog_make_${ac_make}_set=yes;;
+ *)
+ eval ac_cv_prog_make_${ac_make}_set=no;;
+esac
+rm -f conftest.make
+fi
+if eval test \$ac_cv_prog_make_${ac_make}_set = yes; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ SET_MAKE=
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ SET_MAKE="MAKE=${MAKE-make}"
+fi
+
+if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}ranlib", so it can be a program name with args.
+set dummy ${ac_tool_prefix}ranlib; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_RANLIB+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$RANLIB"; then
+ ac_cv_prog_RANLIB="$RANLIB" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_RANLIB="${ac_tool_prefix}ranlib"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+RANLIB=$ac_cv_prog_RANLIB
+if test -n "$RANLIB"; then
+ { $as_echo "$as_me:$LINENO: result: $RANLIB" >&5
+$as_echo "$RANLIB" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_RANLIB"; then
+ ac_ct_RANLIB=$RANLIB
+ # Extract the first word of "ranlib", so it can be a program name with args.
+set dummy ranlib; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_RANLIB+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_RANLIB"; then
+ ac_cv_prog_ac_ct_RANLIB="$ac_ct_RANLIB" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_RANLIB="ranlib"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_RANLIB=$ac_cv_prog_ac_ct_RANLIB
+if test -n "$ac_ct_RANLIB"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_RANLIB" >&5
+$as_echo "$ac_ct_RANLIB" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_RANLIB" = x; then
+ RANLIB=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ RANLIB=$ac_ct_RANLIB
+ fi
+else
+ RANLIB="$ac_cv_prog_RANLIB"
+fi
+
+
+
+# Set options
+
+
+
+ enable_dlopen=no
+
+
+ enable_win32_dll=no
+
+
+ # Check whether --enable-shared was given.
+if test "${enable_shared+set}" = set; then
+ enableval=$enable_shared; p=${PACKAGE-default}
+ case $enableval in
+ yes) enable_shared=yes ;;
+ no) enable_shared=no ;;
+ *)
+ enable_shared=no
+ # Look at the argument we got. We use all the common list separators.
+ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR,"
+ for pkg in $enableval; do
+ IFS="$lt_save_ifs"
+ if test "X$pkg" = "X$p"; then
+ enable_shared=yes
+ fi
+ done
+ IFS="$lt_save_ifs"
+ ;;
+ esac
+else
+ enable_shared=yes
+fi
+
+
+
+
+
+
+
+
+
+ # Check whether --enable-static was given.
+if test "${enable_static+set}" = set; then
+ enableval=$enable_static; p=${PACKAGE-default}
+ case $enableval in
+ yes) enable_static=yes ;;
+ no) enable_static=no ;;
+ *)
+ enable_static=no
+ # Look at the argument we got. We use all the common list separators.
+ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR,"
+ for pkg in $enableval; do
+ IFS="$lt_save_ifs"
+ if test "X$pkg" = "X$p"; then
+ enable_static=yes
+ fi
+ done
+ IFS="$lt_save_ifs"
+ ;;
+ esac
+else
+ enable_static=yes
+fi
+
+
+
+
+
+
+
+
+
+
+# Check whether --with-pic was given.
+if test "${with_pic+set}" = set; then
+ withval=$with_pic; pic_mode="$withval"
+else
+ pic_mode=default
+fi
+
+
+test -z "$pic_mode" && pic_mode=default
+
+
+
+
+
+
+
+ # Check whether --enable-fast-install was given.
+if test "${enable_fast_install+set}" = set; then
+ enableval=$enable_fast_install; p=${PACKAGE-default}
+ case $enableval in
+ yes) enable_fast_install=yes ;;
+ no) enable_fast_install=no ;;
+ *)
+ enable_fast_install=no
+ # Look at the argument we got. We use all the common list separators.
+ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR,"
+ for pkg in $enableval; do
+ IFS="$lt_save_ifs"
+ if test "X$pkg" = "X$p"; then
+ enable_fast_install=yes
+ fi
+ done
+ IFS="$lt_save_ifs"
+ ;;
+ esac
+else
+ enable_fast_install=yes
+fi
+
+
+
+
+
+
+
+
+
+
+
+# This can be used to rebuild libtool when needed
+LIBTOOL_DEPS="$ltmain"
+
+# Always use our own libtool.
+LIBTOOL='$(SHELL) $(top_builddir)/libtool'
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+test -z "$LN_S" && LN_S="ln -s"
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+if test -n "${ZSH_VERSION+set}" ; then
+ setopt NO_GLOB_SUBST
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for objdir" >&5
+$as_echo_n "checking for objdir... " >&6; }
+if test "${lt_cv_objdir+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ rm -f .libs 2>/dev/null
+mkdir .libs 2>/dev/null
+if test -d .libs; then
+ lt_cv_objdir=.libs
+else
+ # MS-DOS does not allow filenames that begin with a dot.
+ lt_cv_objdir=_libs
+fi
+rmdir .libs 2>/dev/null
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_objdir" >&5
+$as_echo "$lt_cv_objdir" >&6; }
+objdir=$lt_cv_objdir
+
+
+
+
+
+cat >>confdefs.h <<_ACEOF
+#define LT_OBJDIR "$lt_cv_objdir/"
+_ACEOF
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+case $host_os in
+aix3*)
+ # AIX sometimes has problems with the GCC collect2 program. For some
+ # reason, if we set the COLLECT_NAMES environment variable, the problems
+ # vanish in a puff of smoke.
+ if test "X${COLLECT_NAMES+set}" != Xset; then
+ COLLECT_NAMES=
+ export COLLECT_NAMES
+ fi
+ ;;
+esac
+
+# Sed substitution that helps us do robust quoting. It backslashifies
+# metacharacters that are still active within double-quoted strings.
+sed_quote_subst='s/\(["`$\\]\)/\\\1/g'
+
+# Same as above, but do not quote variable references.
+double_quote_subst='s/\(["`\\]\)/\\\1/g'
+
+# Sed substitution to delay expansion of an escaped shell variable in a
+# double_quote_subst'ed string.
+delay_variable_subst='s/\\\\\\\\\\\$/\\\\\\$/g'
+
+# Sed substitution to delay expansion of an escaped single quote.
+delay_single_quote_subst='s/'\''/'\'\\\\\\\'\''/g'
+
+# Sed substitution to avoid accidental globbing in evaled expressions
+no_glob_subst='s/\*/\\\*/g'
+
+# Global variables:
+ofile=libtool
+can_build_shared=yes
+
+# All known linkers require a `.a' archive for static linking (except MSVC,
+# which needs '.lib').
+libext=a
+
+with_gnu_ld="$lt_cv_prog_gnu_ld"
+
+old_CC="$CC"
+old_CFLAGS="$CFLAGS"
+
+# Set sane defaults for various variables
+test -z "$CC" && CC=cc
+test -z "$LTCC" && LTCC=$CC
+test -z "$LTCFLAGS" && LTCFLAGS=$CFLAGS
+test -z "$LD" && LD=ld
+test -z "$ac_objext" && ac_objext=o
+
+for cc_temp in $compiler""; do
+ case $cc_temp in
+ compile | *[\\/]compile | ccache | *[\\/]ccache ) ;;
+ distcc | *[\\/]distcc | purify | *[\\/]purify ) ;;
+ \-*) ;;
+ *) break;;
+ esac
+done
+cc_basename=`$ECHO "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"`
+
+
+# Only perform the check for file, if the check method requires it
+test -z "$MAGIC_CMD" && MAGIC_CMD=file
+case $deplibs_check_method in
+file_magic*)
+ if test "$file_magic_cmd" = '$MAGIC_CMD'; then
+ { $as_echo "$as_me:$LINENO: checking for ${ac_tool_prefix}file" >&5
+$as_echo_n "checking for ${ac_tool_prefix}file... " >&6; }
+if test "${lt_cv_path_MAGIC_CMD+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ case $MAGIC_CMD in
+[\\/*] | ?:[\\/]*)
+ lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path.
+ ;;
+*)
+ lt_save_MAGIC_CMD="$MAGIC_CMD"
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ ac_dummy="/usr/bin$PATH_SEPARATOR$PATH"
+ for ac_dir in $ac_dummy; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ if test -f $ac_dir/${ac_tool_prefix}file; then
+ lt_cv_path_MAGIC_CMD="$ac_dir/${ac_tool_prefix}file"
+ if test -n "$file_magic_test_file"; then
+ case $deplibs_check_method in
+ "file_magic "*)
+ file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
+ MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
+ if eval $file_magic_cmd \$file_magic_test_file 2> /dev/null |
+ $EGREP "$file_magic_regex" > /dev/null; then
+ :
+ else
+ cat <<_LT_EOF 1>&2
+
+*** Warning: the command libtool uses to detect shared libraries,
+*** $file_magic_cmd, produces output that libtool cannot recognize.
+*** The result is that libtool may fail to recognize shared libraries
+*** as such. This will affect the creation of libtool libraries that
+*** depend on shared libraries, but programs linked with such libtool
+*** libraries will work regardless of this problem. Nevertheless, you
+*** may want to report the problem to your system manager and/or to
+*** bug-libtool at gnu.org
+
+_LT_EOF
+ fi ;;
+ esac
+ fi
+ break
+ fi
+ done
+ IFS="$lt_save_ifs"
+ MAGIC_CMD="$lt_save_MAGIC_CMD"
+ ;;
+esac
+fi
+
+MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
+if test -n "$MAGIC_CMD"; then
+ { $as_echo "$as_me:$LINENO: result: $MAGIC_CMD" >&5
+$as_echo "$MAGIC_CMD" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+
+
+
+if test -z "$lt_cv_path_MAGIC_CMD"; then
+ if test -n "$ac_tool_prefix"; then
+ { $as_echo "$as_me:$LINENO: checking for file" >&5
+$as_echo_n "checking for file... " >&6; }
+if test "${lt_cv_path_MAGIC_CMD+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ case $MAGIC_CMD in
+[\\/*] | ?:[\\/]*)
+ lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path.
+ ;;
+*)
+ lt_save_MAGIC_CMD="$MAGIC_CMD"
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ ac_dummy="/usr/bin$PATH_SEPARATOR$PATH"
+ for ac_dir in $ac_dummy; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ if test -f $ac_dir/file; then
+ lt_cv_path_MAGIC_CMD="$ac_dir/file"
+ if test -n "$file_magic_test_file"; then
+ case $deplibs_check_method in
+ "file_magic "*)
+ file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
+ MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
+ if eval $file_magic_cmd \$file_magic_test_file 2> /dev/null |
+ $EGREP "$file_magic_regex" > /dev/null; then
+ :
+ else
+ cat <<_LT_EOF 1>&2
+
+*** Warning: the command libtool uses to detect shared libraries,
+*** $file_magic_cmd, produces output that libtool cannot recognize.
+*** The result is that libtool may fail to recognize shared libraries
+*** as such. This will affect the creation of libtool libraries that
+*** depend on shared libraries, but programs linked with such libtool
+*** libraries will work regardless of this problem. Nevertheless, you
+*** may want to report the problem to your system manager and/or to
+*** bug-libtool at gnu.org
+
+_LT_EOF
+ fi ;;
+ esac
+ fi
+ break
+ fi
+ done
+ IFS="$lt_save_ifs"
+ MAGIC_CMD="$lt_save_MAGIC_CMD"
+ ;;
+esac
+fi
+
+MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
+if test -n "$MAGIC_CMD"; then
+ { $as_echo "$as_me:$LINENO: result: $MAGIC_CMD" >&5
+$as_echo "$MAGIC_CMD" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ else
+ MAGIC_CMD=:
+ fi
+fi
+
+ fi
+ ;;
+esac
+
+# Use C for the default configuration in the libtool script
+
+lt_save_CC="$CC"
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+# Source file extension for C test sources.
+ac_ext=c
+
+# Object file extension for compiled C test sources.
+objext=o
+objext=$objext
+
+# Code to be used in simple compile tests
+lt_simple_compile_test_code="int some_variable = 0;"
+
+# Code to be used in simple link tests
+lt_simple_link_test_code='int main(){return(0);}'
+
+
+
+
+
+
+
+# If no C compiler was specified, use CC.
+LTCC=${LTCC-"$CC"}
+
+# If no C compiler flags were specified, use CFLAGS.
+LTCFLAGS=${LTCFLAGS-"$CFLAGS"}
+
+# Allow CC to be a program name with arguments.
+compiler=$CC
+
+# Save the default compiler, since it gets overwritten when the other
+# tags are being tested, and _LT_TAGVAR(compiler, []) is a NOP.
+compiler_DEFAULT=$CC
+
+# save warnings/boilerplate of simple test code
+ac_outfile=conftest.$ac_objext
+echo "$lt_simple_compile_test_code" >conftest.$ac_ext
+eval "$ac_compile" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err
+_lt_compiler_boilerplate=`cat conftest.err`
+$RM conftest*
+
+ac_outfile=conftest.$ac_objext
+echo "$lt_simple_link_test_code" >conftest.$ac_ext
+eval "$ac_link" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err
+_lt_linker_boilerplate=`cat conftest.err`
+$RM -r conftest*
+
+
+## CAVEAT EMPTOR:
+## There is no encapsulation within the following macros, do not change
+## the running order or otherwise move them around unless you know exactly
+## what you are doing...
+if test -n "$compiler"; then
+
+lt_prog_compiler_no_builtin_flag=
+
+if test "$GCC" = yes; then
+ lt_prog_compiler_no_builtin_flag=' -fno-builtin'
+
+ { $as_echo "$as_me:$LINENO: checking if $compiler supports -fno-rtti -fno-exceptions" >&5
+$as_echo_n "checking if $compiler supports -fno-rtti -fno-exceptions... " >&6; }
+if test "${lt_cv_prog_compiler_rtti_exceptions+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_rtti_exceptions=no
+ ac_outfile=conftest.$ac_objext
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+ lt_compiler_flag="-fno-rtti -fno-exceptions"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ # The option is referenced via a variable to avoid confusing sed.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:9351: $lt_compile\"" >&5)
+ (eval "$lt_compile" 2>conftest.err)
+ ac_status=$?
+ cat conftest.err >&5
+ echo "$as_me:9355: \$? = $ac_status" >&5
+ if (exit $ac_status) && test -s "$ac_outfile"; then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings other than the usual output.
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' >conftest.exp
+ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2
+ if test ! -s conftest.er2 || diff conftest.exp conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_rtti_exceptions=yes
+ fi
+ fi
+ $RM conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_rtti_exceptions" >&5
+$as_echo "$lt_cv_prog_compiler_rtti_exceptions" >&6; }
+
+if test x"$lt_cv_prog_compiler_rtti_exceptions" = xyes; then
+ lt_prog_compiler_no_builtin_flag="$lt_prog_compiler_no_builtin_flag -fno-rtti -fno-exceptions"
+else
+ :
+fi
+
+fi
+
+
+
+
+
+
+ lt_prog_compiler_wl=
+lt_prog_compiler_pic=
+lt_prog_compiler_static=
+
+{ $as_echo "$as_me:$LINENO: checking for $compiler option to produce PIC" >&5
+$as_echo_n "checking for $compiler option to produce PIC... " >&6; }
+
+ if test "$GCC" = yes; then
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_static='-static'
+
+ case $host_os in
+ aix*)
+ # All AIX code is PIC.
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ lt_prog_compiler_static='-Bstatic'
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ lt_prog_compiler_pic='-fPIC'
+ ;;
+ m68k)
+ # FIXME: we need at least 68020 code to build shared libraries, but
+ # adding the `-m68020' flag to GCC prevents building anything better,
+ # like `-m68040'.
+ lt_prog_compiler_pic='-m68020 -resident32 -malways-restore-a4'
+ ;;
+ esac
+ ;;
+
+ beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*)
+ # PIC is the default for these OSes.
+ ;;
+
+ mingw* | cygwin* | pw32* | os2* | cegcc*)
+ # This hack is so that the source file can tell whether it is being
+ # built for inclusion in a dll (and should export symbols for example).
+ # Although the cygwin gcc ignores -fPIC, still need this for old-style
+ # (--disable-auto-import) libraries
+ lt_prog_compiler_pic='-DDLL_EXPORT'
+ ;;
+
+ darwin* | rhapsody*)
+ # PIC is the default on this platform
+ # Common symbols not allowed in MH_DYLIB files
+ lt_prog_compiler_pic='-fno-common'
+ ;;
+
+ hpux*)
+ # PIC is the default for 64-bit PA HP-UX, but not for 32-bit
+ # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag
+ # sets the default TLS model and affects inlining.
+ case $host_cpu in
+ hppa*64*)
+ # +Z the default
+ ;;
+ *)
+ lt_prog_compiler_pic='-fPIC'
+ ;;
+ esac
+ ;;
+
+ interix[3-9]*)
+ # Interix 3.x gcc -fpic/-fPIC options generate broken code.
+ # Instead, we relocate shared libraries at runtime.
+ ;;
+
+ msdosdjgpp*)
+ # Just because we use GCC doesn't mean we suddenly get shared libraries
+ # on systems that don't support them.
+ lt_prog_compiler_can_build_shared=no
+ enable_shared=no
+ ;;
+
+ *nto* | *qnx*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ lt_prog_compiler_pic='-fPIC -shared'
+ ;;
+
+ sysv4*MP*)
+ if test -d /usr/nec; then
+ lt_prog_compiler_pic=-Kconform_pic
+ fi
+ ;;
+
+ *)
+ lt_prog_compiler_pic='-fPIC'
+ ;;
+ esac
+ else
+ # PORTME Check for flag to pass linker flags through the system compiler.
+ case $host_os in
+ aix*)
+ lt_prog_compiler_wl='-Wl,'
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ lt_prog_compiler_static='-Bstatic'
+ else
+ lt_prog_compiler_static='-bnso -bI:/lib/syscalls.exp'
+ fi
+ ;;
+
+ mingw* | cygwin* | pw32* | os2* | cegcc*)
+ # This hack is so that the source file can tell whether it is being
+ # built for inclusion in a dll (and should export symbols for example).
+ lt_prog_compiler_pic='-DDLL_EXPORT'
+ ;;
+
+ hpux9* | hpux10* | hpux11*)
+ lt_prog_compiler_wl='-Wl,'
+ # PIC is the default for IA64 HP-UX and 64-bit HP-UX, but
+ # not for PA HP-UX.
+ case $host_cpu in
+ hppa*64*|ia64*)
+ # +Z the default
+ ;;
+ *)
+ lt_prog_compiler_pic='+Z'
+ ;;
+ esac
+ # Is there a better lt_prog_compiler_static that works with the bundled CC?
+ lt_prog_compiler_static='${wl}-a ${wl}archive'
+ ;;
+
+ irix5* | irix6* | nonstopux*)
+ lt_prog_compiler_wl='-Wl,'
+ # PIC (with -KPIC) is the default.
+ lt_prog_compiler_static='-non_shared'
+ ;;
+
+ linux* | k*bsd*-gnu)
+ case $cc_basename in
+ # old Intel for x86_64 which still supported -KPIC.
+ ecc*)
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_pic='-KPIC'
+ lt_prog_compiler_static='-static'
+ ;;
+ # icc used to be incompatible with GCC.
+ # ICC 10 doesn't accept -KPIC any more.
+ icc* | ifort*)
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_pic='-fPIC'
+ lt_prog_compiler_static='-static'
+ ;;
+ # Lahey Fortran 8.1.
+ lf95*)
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_pic='--shared'
+ lt_prog_compiler_static='--static'
+ ;;
+ pgcc* | pgf77* | pgf90* | pgf95*)
+ # Portland Group compilers (*not* the Pentium gcc compiler,
+ # which looks to be a dead project)
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_pic='-fpic'
+ lt_prog_compiler_static='-Bstatic'
+ ;;
+ ccc*)
+ lt_prog_compiler_wl='-Wl,'
+ # All Alpha code is PIC.
+ lt_prog_compiler_static='-non_shared'
+ ;;
+ xl*)
+ # IBM XL C 8.0/Fortran 10.1 on PPC
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_pic='-qpic'
+ lt_prog_compiler_static='-qstaticlink'
+ ;;
+ *)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C 5.9
+ lt_prog_compiler_pic='-KPIC'
+ lt_prog_compiler_static='-Bstatic'
+ lt_prog_compiler_wl='-Wl,'
+ ;;
+ *Sun\ F*)
+ # Sun Fortran 8.3 passes all unrecognized flags to the linker
+ lt_prog_compiler_pic='-KPIC'
+ lt_prog_compiler_static='-Bstatic'
+ lt_prog_compiler_wl=''
+ ;;
+ esac
+ ;;
+ esac
+ ;;
+
+ newsos6)
+ lt_prog_compiler_pic='-KPIC'
+ lt_prog_compiler_static='-Bstatic'
+ ;;
+
+ *nto* | *qnx*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ lt_prog_compiler_pic='-fPIC -shared'
+ ;;
+
+ osf3* | osf4* | osf5*)
+ lt_prog_compiler_wl='-Wl,'
+ # All OSF/1 code is PIC.
+ lt_prog_compiler_static='-non_shared'
+ ;;
+
+ rdos*)
+ lt_prog_compiler_static='-non_shared'
+ ;;
+
+ solaris*)
+ lt_prog_compiler_pic='-KPIC'
+ lt_prog_compiler_static='-Bstatic'
+ case $cc_basename in
+ f77* | f90* | f95*)
+ lt_prog_compiler_wl='-Qoption ld ';;
+ *)
+ lt_prog_compiler_wl='-Wl,';;
+ esac
+ ;;
+
+ sunos4*)
+ lt_prog_compiler_wl='-Qoption ld '
+ lt_prog_compiler_pic='-PIC'
+ lt_prog_compiler_static='-Bstatic'
+ ;;
+
+ sysv4 | sysv4.2uw2* | sysv4.3*)
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_pic='-KPIC'
+ lt_prog_compiler_static='-Bstatic'
+ ;;
+
+ sysv4*MP*)
+ if test -d /usr/nec ;then
+ lt_prog_compiler_pic='-Kconform_pic'
+ lt_prog_compiler_static='-Bstatic'
+ fi
+ ;;
+
+ sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*)
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_pic='-KPIC'
+ lt_prog_compiler_static='-Bstatic'
+ ;;
+
+ unicos*)
+ lt_prog_compiler_wl='-Wl,'
+ lt_prog_compiler_can_build_shared=no
+ ;;
+
+ uts4*)
+ lt_prog_compiler_pic='-pic'
+ lt_prog_compiler_static='-Bstatic'
+ ;;
+
+ *)
+ lt_prog_compiler_can_build_shared=no
+ ;;
+ esac
+ fi
+
+case $host_os in
+ # For platforms which do not support PIC, -DPIC is meaningless:
+ *djgpp*)
+ lt_prog_compiler_pic=
+ ;;
+ *)
+ lt_prog_compiler_pic="$lt_prog_compiler_pic -DPIC"
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: result: $lt_prog_compiler_pic" >&5
+$as_echo "$lt_prog_compiler_pic" >&6; }
+
+
+
+
+
+
+#
+# Check to make sure the PIC flag actually works.
+#
+if test -n "$lt_prog_compiler_pic"; then
+ { $as_echo "$as_me:$LINENO: checking if $compiler PIC flag $lt_prog_compiler_pic works" >&5
+$as_echo_n "checking if $compiler PIC flag $lt_prog_compiler_pic works... " >&6; }
+if test "${lt_cv_prog_compiler_pic_works+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_pic_works=no
+ ac_outfile=conftest.$ac_objext
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+ lt_compiler_flag="$lt_prog_compiler_pic -DPIC"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ # The option is referenced via a variable to avoid confusing sed.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:9690: $lt_compile\"" >&5)
+ (eval "$lt_compile" 2>conftest.err)
+ ac_status=$?
+ cat conftest.err >&5
+ echo "$as_me:9694: \$? = $ac_status" >&5
+ if (exit $ac_status) && test -s "$ac_outfile"; then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings other than the usual output.
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' >conftest.exp
+ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2
+ if test ! -s conftest.er2 || diff conftest.exp conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_pic_works=yes
+ fi
+ fi
+ $RM conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_pic_works" >&5
+$as_echo "$lt_cv_prog_compiler_pic_works" >&6; }
+
+if test x"$lt_cv_prog_compiler_pic_works" = xyes; then
+ case $lt_prog_compiler_pic in
+ "" | " "*) ;;
+ *) lt_prog_compiler_pic=" $lt_prog_compiler_pic" ;;
+ esac
+else
+ lt_prog_compiler_pic=
+ lt_prog_compiler_can_build_shared=no
+fi
+
+fi
+
+
+
+
+
+
+#
+# Check to make sure the static flag actually works.
+#
+wl=$lt_prog_compiler_wl eval lt_tmp_static_flag=\"$lt_prog_compiler_static\"
+{ $as_echo "$as_me:$LINENO: checking if $compiler static flag $lt_tmp_static_flag works" >&5
+$as_echo_n "checking if $compiler static flag $lt_tmp_static_flag works... " >&6; }
+if test "${lt_cv_prog_compiler_static_works+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_static_works=no
+ save_LDFLAGS="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $lt_tmp_static_flag"
+ echo "$lt_simple_link_test_code" > conftest.$ac_ext
+ if (eval $ac_link 2>conftest.err) && test -s conftest$ac_exeext; then
+ # The linker can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ if test -s conftest.err; then
+ # Append any errors to the config.log.
+ cat conftest.err 1>&5
+ $ECHO "X$_lt_linker_boilerplate" | $Xsed -e '/^$/d' > conftest.exp
+ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2
+ if diff conftest.exp conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_static_works=yes
+ fi
+ else
+ lt_cv_prog_compiler_static_works=yes
+ fi
+ fi
+ $RM -r conftest*
+ LDFLAGS="$save_LDFLAGS"
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_static_works" >&5
+$as_echo "$lt_cv_prog_compiler_static_works" >&6; }
+
+if test x"$lt_cv_prog_compiler_static_works" = xyes; then
+ :
+else
+ lt_prog_compiler_static=
+fi
+
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking if $compiler supports -c -o file.$ac_objext" >&5
+$as_echo_n "checking if $compiler supports -c -o file.$ac_objext... " >&6; }
+if test "${lt_cv_prog_compiler_c_o+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_c_o=no
+ $RM -r conftest 2>/dev/null
+ mkdir conftest
+ cd conftest
+ mkdir out
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ lt_compiler_flag="-o out/conftest2.$ac_objext"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:9795: $lt_compile\"" >&5)
+ (eval "$lt_compile" 2>out/conftest.err)
+ ac_status=$?
+ cat out/conftest.err >&5
+ echo "$as_me:9799: \$? = $ac_status" >&5
+ if (exit $ac_status) && test -s out/conftest2.$ac_objext
+ then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' > out/conftest.exp
+ $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2
+ if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_c_o=yes
+ fi
+ fi
+ chmod u+w . 2>&5
+ $RM conftest*
+ # SGI C++ compiler will create directory out/ii_files/ for
+ # template instantiation
+ test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files
+ $RM out/* && rmdir out
+ cd ..
+ $RM -r conftest
+ $RM conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_c_o" >&5
+$as_echo "$lt_cv_prog_compiler_c_o" >&6; }
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking if $compiler supports -c -o file.$ac_objext" >&5
+$as_echo_n "checking if $compiler supports -c -o file.$ac_objext... " >&6; }
+if test "${lt_cv_prog_compiler_c_o+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_c_o=no
+ $RM -r conftest 2>/dev/null
+ mkdir conftest
+ cd conftest
+ mkdir out
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ lt_compiler_flag="-o out/conftest2.$ac_objext"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:9850: $lt_compile\"" >&5)
+ (eval "$lt_compile" 2>out/conftest.err)
+ ac_status=$?
+ cat out/conftest.err >&5
+ echo "$as_me:9854: \$? = $ac_status" >&5
+ if (exit $ac_status) && test -s out/conftest2.$ac_objext
+ then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' > out/conftest.exp
+ $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2
+ if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_c_o=yes
+ fi
+ fi
+ chmod u+w . 2>&5
+ $RM conftest*
+ # SGI C++ compiler will create directory out/ii_files/ for
+ # template instantiation
+ test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files
+ $RM out/* && rmdir out
+ cd ..
+ $RM -r conftest
+ $RM conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_c_o" >&5
+$as_echo "$lt_cv_prog_compiler_c_o" >&6; }
+
+
+
+
+hard_links="nottested"
+if test "$lt_cv_prog_compiler_c_o" = no && test "$need_locks" != no; then
+ # do not overwrite the value of need_locks provided by the user
+ { $as_echo "$as_me:$LINENO: checking if we can lock with hard links" >&5
+$as_echo_n "checking if we can lock with hard links... " >&6; }
+ hard_links=yes
+ $RM conftest*
+ ln conftest.a conftest.b 2>/dev/null && hard_links=no
+ touch conftest.a
+ ln conftest.a conftest.b 2>&5 || hard_links=no
+ ln conftest.a conftest.b 2>/dev/null && hard_links=no
+ { $as_echo "$as_me:$LINENO: result: $hard_links" >&5
+$as_echo "$hard_links" >&6; }
+ if test "$hard_links" = no; then
+ { $as_echo "$as_me:$LINENO: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&5
+$as_echo "$as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&2;}
+ need_locks=warn
+ fi
+else
+ need_locks=no
+fi
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the $compiler linker ($LD) supports shared libraries" >&5
+$as_echo_n "checking whether the $compiler linker ($LD) supports shared libraries... " >&6; }
+
+ runpath_var=
+ allow_undefined_flag=
+ always_export_symbols=no
+ archive_cmds=
+ archive_expsym_cmds=
+ compiler_needs_object=no
+ enable_shared_with_static_runtimes=no
+ export_dynamic_flag_spec=
+ export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
+ hardcode_automatic=no
+ hardcode_direct=no
+ hardcode_direct_absolute=no
+ hardcode_libdir_flag_spec=
+ hardcode_libdir_flag_spec_ld=
+ hardcode_libdir_separator=
+ hardcode_minus_L=no
+ hardcode_shlibpath_var=unsupported
+ inherit_rpath=no
+ link_all_deplibs=unknown
+ module_cmds=
+ module_expsym_cmds=
+ old_archive_from_new_cmds=
+ old_archive_from_expsyms_cmds=
+ thread_safe_flag_spec=
+ whole_archive_flag_spec=
+ # include_expsyms should be a list of space-separated symbols to be *always*
+ # included in the symbol list
+ include_expsyms=
+ # exclude_expsyms can be an extended regexp of symbols to exclude
+ # it will be wrapped by ` (' and `)$', so one must not match beginning or
+ # end of line. Example: `a|bc|.*d.*' will exclude the symbols `a' and `bc',
+ # as well as any symbol that contains `d'.
+ exclude_expsyms='_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*'
+ # Although _GLOBAL_OFFSET_TABLE_ is a valid symbol C name, most a.out
+ # platforms (ab)use it in PIC code, but their linkers get confused if
+ # the symbol is explicitly referenced. Since portable code cannot
+ # rely on this symbol name, it's probably fine to never include it in
+ # preloaded symbol tables.
+ # Exclude shared library initialization/finalization symbols.
+ extract_expsyms_cmds=
+
+ case $host_os in
+ cygwin* | mingw* | pw32* | cegcc*)
+ # FIXME: the MSVC++ port hasn't been tested in a loooong time
+ # When not using gcc, we currently assume that we are using
+ # Microsoft Visual C++.
+ if test "$GCC" != yes; then
+ with_gnu_ld=no
+ fi
+ ;;
+ interix*)
+ # we just hope/assume this is gcc and not c89 (= MSVC++)
+ with_gnu_ld=yes
+ ;;
+ openbsd*)
+ with_gnu_ld=no
+ ;;
+ esac
+
+ ld_shlibs=yes
+ if test "$with_gnu_ld" = yes; then
+ # If archive_cmds runs LD, not CC, wlarc should be empty
+ wlarc='${wl}'
+
+ # Set some defaults for GNU ld with shared library support. These
+ # are reset later if shared libraries are not supported. Putting them
+ # here allows them to be overridden if necessary.
+ runpath_var=LD_RUN_PATH
+ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
+ export_dynamic_flag_spec='${wl}--export-dynamic'
+ # ancient GNU ld didn't support --whole-archive et. al.
+ if $LD --help 2>&1 | $GREP 'no-whole-archive' > /dev/null; then
+ whole_archive_flag_spec="$wlarc"'--whole-archive$convenience '"$wlarc"'--no-whole-archive'
+ else
+ whole_archive_flag_spec=
+ fi
+ supports_anon_versioning=no
+ case `$LD -v 2>&1` in
+ *\ [01].* | *\ 2.[0-9].* | *\ 2.10.*) ;; # catch versions < 2.11
+ *\ 2.11.93.0.2\ *) supports_anon_versioning=yes ;; # RH7.3 ...
+ *\ 2.11.92.0.12\ *) supports_anon_versioning=yes ;; # Mandrake 8.2 ...
+ *\ 2.11.*) ;; # other 2.11 versions
+ *) supports_anon_versioning=yes ;;
+ esac
+
+ # See if GNU ld supports shared libraries.
+ case $host_os in
+ aix[3-9]*)
+ # On AIX/PPC, the GNU linker is very broken
+ if test "$host_cpu" != ia64; then
+ ld_shlibs=no
+ cat <<_LT_EOF 1>&2
+
+*** Warning: the GNU linker, at least up to release 2.9.1, is reported
+*** to be unable to reliably create shared libraries on AIX.
+*** Therefore, libtool is disabling shared libraries support. If you
+*** really care for shared libraries, you may want to modify your PATH
+*** so that a non-GNU linker is found, and then restart.
+
+_LT_EOF
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds=''
+ ;;
+ m68k)
+ archive_cmds='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)'
+ hardcode_libdir_flag_spec='-L$libdir'
+ hardcode_minus_L=yes
+ ;;
+ esac
+ ;;
+
+ beos*)
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ allow_undefined_flag=unsupported
+ # Joseph Beckenbach <jrb3 at best.com> says some releases of gcc
+ # support --undefined. This deserves some investigation. FIXME
+ archive_cmds='$CC -nostart $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ else
+ ld_shlibs=no
+ fi
+ ;;
+
+ cygwin* | mingw* | pw32* | cegcc*)
+ # _LT_TAGVAR(hardcode_libdir_flag_spec, ) is actually meaningless,
+ # as there is no search path for DLLs.
+ hardcode_libdir_flag_spec='-L$libdir'
+ allow_undefined_flag=unsupported
+ always_export_symbols=no
+ enable_shared_with_static_runtimes=yes
+ export_symbols_cmds='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1 DATA/'\'' | $SED -e '\''/^[AITW][ ]/s/.*[ ]//'\'' | sort | uniq > $export_symbols'
+
+ if $LD --help 2>&1 | $GREP 'auto-import' > /dev/null; then
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ # If the export-symbols file already is a .def file (1st line
+ # is EXPORTS), use it as is; otherwise, prepend...
+ archive_expsym_cmds='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
+ cp $export_symbols $output_objdir/$soname.def;
+ else
+ echo EXPORTS > $output_objdir/$soname.def;
+ cat $export_symbols >> $output_objdir/$soname.def;
+ fi~
+ $CC -shared $output_objdir/$soname.def $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ else
+ ld_shlibs=no
+ fi
+ ;;
+
+ interix[3-9]*)
+ hardcode_direct=no
+ hardcode_shlibpath_var=no
+ hardcode_libdir_flag_spec='${wl}-rpath,$libdir'
+ export_dynamic_flag_spec='${wl}-E'
+ # Hack: On Interix 3.x, we cannot compile PIC because of a broken gcc.
+ # Instead, shared libraries are loaded at an image base (0x10000000 by
+ # default) and relocated if they conflict, which is a slow very memory
+ # consuming and fragmenting process. To avoid this, we pick a random,
+ # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link
+ # time. Moving up from 0x10000000 also allows more sbrk(2) space.
+ archive_cmds='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ archive_expsym_cmds='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ ;;
+
+ gnu* | linux* | tpf* | k*bsd*-gnu)
+ tmp_diet=no
+ if test "$host_os" = linux-dietlibc; then
+ case $cc_basename in
+ diet\ *) tmp_diet=yes;; # linux-dietlibc with static linking (!diet-dyn)
+ esac
+ fi
+ if $LD --help 2>&1 | $EGREP ': supported targets:.* elf' > /dev/null \
+ && test "$tmp_diet" = no
+ then
+ tmp_addflag=
+ tmp_sharedflag='-shared'
+ case $cc_basename,$host_cpu in
+ pgcc*) # Portland Group C compiler
+ whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ tmp_addflag=' $pic_flag'
+ ;;
+ pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers
+ whole_archive_flag_spec='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ tmp_addflag=' $pic_flag -Mnomain' ;;
+ ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64
+ tmp_addflag=' -i_dynamic' ;;
+ efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64
+ tmp_addflag=' -i_dynamic -nofor_main' ;;
+ ifc* | ifort*) # Intel Fortran compiler
+ tmp_addflag=' -nofor_main' ;;
+ lf95*) # Lahey Fortran 8.1
+ whole_archive_flag_spec=
+ tmp_sharedflag='--shared' ;;
+ xl[cC]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ tmp_sharedflag='-qmkshrobj'
+ tmp_addflag= ;;
+ esac
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*) # Sun C 5.9
+ whole_archive_flag_spec='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ compiler_needs_object=yes
+ tmp_sharedflag='-G' ;;
+ *Sun\ F*) # Sun Fortran 8.3
+ tmp_sharedflag='-G' ;;
+ esac
+ archive_cmds='$CC '"$tmp_sharedflag""$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+
+ if test "x$supports_anon_versioning" = xyes; then
+ archive_expsym_cmds='echo "{ global:" > $output_objdir/$libname.ver~
+ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~
+ echo "local: *; };" >> $output_objdir/$libname.ver~
+ $CC '"$tmp_sharedflag""$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib'
+ fi
+
+ case $cc_basename in
+ xlf*)
+ # IBM XL Fortran 10.1 on PPC cannot create shared libs itself
+ whole_archive_flag_spec='--whole-archive$convenience --no-whole-archive'
+ hardcode_libdir_flag_spec=
+ hardcode_libdir_flag_spec_ld='-rpath $libdir'
+ archive_cmds='$LD -shared $libobjs $deplibs $compiler_flags -soname $soname -o $lib'
+ if test "x$supports_anon_versioning" = xyes; then
+ archive_expsym_cmds='echo "{ global:" > $output_objdir/$libname.ver~
+ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~
+ echo "local: *; };" >> $output_objdir/$libname.ver~
+ $LD -shared $libobjs $deplibs $compiler_flags -soname $soname -version-script $output_objdir/$libname.ver -o $lib'
+ fi
+ ;;
+ esac
+ else
+ ld_shlibs=no
+ fi
+ ;;
+
+ netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ archive_cmds='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib'
+ wlarc=
+ else
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ fi
+ ;;
+
+ solaris*)
+ if $LD -v 2>&1 | $GREP 'BFD 2\.8' > /dev/null; then
+ ld_shlibs=no
+ cat <<_LT_EOF 1>&2
+
+*** Warning: The releases 2.8.* of the GNU linker cannot reliably
+*** create shared libraries on Solaris systems. Therefore, libtool
+*** is disabling shared libraries support. We urge you to upgrade GNU
+*** binutils to release 2.9.1 or newer. Another option is to modify
+*** your PATH or compiler configuration so that the native linker is
+*** used, and then restart.
+
+_LT_EOF
+ elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ else
+ ld_shlibs=no
+ fi
+ ;;
+
+ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*)
+ case `$LD -v 2>&1` in
+ *\ [01].* | *\ 2.[0-9].* | *\ 2.1[0-5].*)
+ ld_shlibs=no
+ cat <<_LT_EOF 1>&2
+
+*** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not
+*** reliably create shared libraries on SCO systems. Therefore, libtool
+*** is disabling shared libraries support. We urge you to upgrade GNU
+*** binutils to release 2.16.91.0.3 or newer. Another option is to modify
+*** your PATH or compiler configuration so that the native linker is
+*** used, and then restart.
+
+_LT_EOF
+ ;;
+ *)
+ # For security reasons, it is highly recommended that you always
+ # use absolute paths for naming shared libraries, and exclude the
+ # DT_RUNPATH tag from executables and libraries. But doing so
+ # requires that you compile everything twice, which is a pain.
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ else
+ ld_shlibs=no
+ fi
+ ;;
+ esac
+ ;;
+
+ sunos4*)
+ archive_cmds='$LD -assert pure-text -Bshareable -o $lib $libobjs $deplibs $linker_flags'
+ wlarc=
+ hardcode_direct=yes
+ hardcode_shlibpath_var=no
+ ;;
+
+ *)
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ else
+ ld_shlibs=no
+ fi
+ ;;
+ esac
+
+ if test "$ld_shlibs" = no; then
+ runpath_var=
+ hardcode_libdir_flag_spec=
+ export_dynamic_flag_spec=
+ whole_archive_flag_spec=
+ fi
+ else
+ # PORTME fill in a description of your system's linker (not GNU ld)
+ case $host_os in
+ aix3*)
+ allow_undefined_flag=unsupported
+ always_export_symbols=yes
+ archive_expsym_cmds='$LD -o $output_objdir/$soname $libobjs $deplibs $linker_flags -bE:$export_symbols -T512 -H512 -bM:SRE~$AR $AR_FLAGS $lib $output_objdir/$soname'
+ # Note: this linker hardcodes the directories in LIBPATH if there
+ # are no directories specified by -L.
+ hardcode_minus_L=yes
+ if test "$GCC" = yes && test -z "$lt_prog_compiler_static"; then
+ # Neither direct hardcoding nor static linking is supported with a
+ # broken collect2.
+ hardcode_direct=unsupported
+ fi
+ ;;
+
+ aix[4-9]*)
+ if test "$host_cpu" = ia64; then
+ # On IA64, the linker does run time linking by default, so we don't
+ # have to do anything special.
+ aix_use_runtimelinking=no
+ exp_sym_flag='-Bexport'
+ no_entry_flag=""
+ else
+ # If we're using GNU nm, then we don't want the "-C" option.
+ # -C means demangle to AIX nm, but means don't demangle with GNU nm
+ if $NM -V 2>&1 | $GREP 'GNU' > /dev/null; then
+ export_symbols_cmds='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && (substr(\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ else
+ export_symbols_cmds='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && (substr(\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ fi
+ aix_use_runtimelinking=no
+
+ # Test if we are trying to use run time linking or normal
+ # AIX style linking. If -brtl is somewhere in LDFLAGS, we
+ # need to do runtime linking.
+ case $host_os in aix4.[23]|aix4.[23].*|aix[5-9]*)
+ for ld_flag in $LDFLAGS; do
+ if (test $ld_flag = "-brtl" || test $ld_flag = "-Wl,-brtl"); then
+ aix_use_runtimelinking=yes
+ break
+ fi
+ done
+ ;;
+ esac
+
+ exp_sym_flag='-bexport'
+ no_entry_flag='-bnoentry'
+ fi
+
+ # When large executables or shared objects are built, AIX ld can
+ # have problems creating the table of contents. If linking a library
+ # or program results in "error TOC overflow" add -mminimal-toc to
+ # CXXFLAGS/CFLAGS for g++/gcc. In the cases where that is not
+ # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS.
+
+ archive_cmds=''
+ hardcode_direct=yes
+ hardcode_direct_absolute=yes
+ hardcode_libdir_separator=':'
+ link_all_deplibs=yes
+ file_list_spec='${wl}-f,'
+
+ if test "$GCC" = yes; then
+ case $host_os in aix4.[012]|aix4.[012].*)
+ # We only want to do this on AIX 4.2 and lower, the check
+ # below for broken collect2 doesn't work under 4.3+
+ collect2name=`${CC} -print-prog-name=collect2`
+ if test -f "$collect2name" &&
+ strings "$collect2name" | $GREP resolve_lib_name >/dev/null
+ then
+ # We have reworked collect2
+ :
+ else
+ # We have old collect2
+ hardcode_direct=unsupported
+ # It fails to find uninstalled libraries when the uninstalled
+ # path is not listed in the libpath. Setting hardcode_minus_L
+ # to unsupported forces relinking
+ hardcode_minus_L=yes
+ hardcode_libdir_flag_spec='-L$libdir'
+ hardcode_libdir_separator=
+ fi
+ ;;
+ esac
+ shared_flag='-shared'
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag="$shared_flag "'${wl}-G'
+ fi
+ else
+ # not using gcc
+ if test "$host_cpu" = ia64; then
+ # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release
+ # chokes on -Wl,-G. The following line is correct:
+ shared_flag='-G'
+ else
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag='${wl}-G'
+ else
+ shared_flag='${wl}-bM:SRE'
+ fi
+ fi
+ fi
+
+ export_dynamic_flag_spec='${wl}-bexpall'
+ # It seems that -bexpall does not export symbols beginning with
+ # underscore (_), so it is better to generate a list of symbols to export.
+ always_export_symbols=yes
+ if test "$aix_use_runtimelinking" = yes; then
+ # Warning - without using the other runtime loading flags (-brtl),
+ # -berok will link without error, but may produce a broken library.
+ allow_undefined_flag='-berok'
+ # Determine the default libpath from the value encoded in an
+ # empty executable.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+
+lt_aix_libpath_sed='
+ /Import File Strings/,/^$/ {
+ /^0/ {
+ s/^0 *\(.*\)$/\1/
+ p
+ }
+ }'
+aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+# Check for a 64-bit object if we didn't find anything.
+if test -z "$aix_libpath"; then
+ aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+fi
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi
+
+ hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath"
+ archive_expsym_cmds='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
+ else
+ if test "$host_cpu" = ia64; then
+ hardcode_libdir_flag_spec='${wl}-R $libdir:/usr/lib:/lib'
+ allow_undefined_flag="-z nodefs"
+ archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols"
+ else
+ # Determine the default libpath from the value encoded in an
+ # empty executable.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+
+lt_aix_libpath_sed='
+ /Import File Strings/,/^$/ {
+ /^0/ {
+ s/^0 *\(.*\)$/\1/
+ p
+ }
+ }'
+aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+# Check for a 64-bit object if we didn't find anything.
+if test -z "$aix_libpath"; then
+ aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+fi
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi
+
+ hardcode_libdir_flag_spec='${wl}-blibpath:$libdir:'"$aix_libpath"
+ # Warning - without using the other run time loading flags,
+ # -berok will link without error, but may produce a broken library.
+ no_undefined_flag=' ${wl}-bernotok'
+ allow_undefined_flag=' ${wl}-berok'
+ # Exported symbols can be pulled into shared objects from archives
+ whole_archive_flag_spec='$convenience'
+ archive_cmds_need_lc=yes
+ # This is similar to how AIX traditionally builds its shared libraries.
+ archive_expsym_cmds="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname'
+ fi
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds=''
+ ;;
+ m68k)
+ archive_cmds='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)'
+ hardcode_libdir_flag_spec='-L$libdir'
+ hardcode_minus_L=yes
+ ;;
+ esac
+ ;;
+
+ bsdi[45]*)
+ export_dynamic_flag_spec=-rdynamic
+ ;;
+
+ cygwin* | mingw* | pw32* | cegcc*)
+ # When not using gcc, we currently assume that we are using
+ # Microsoft Visual C++.
+ # hardcode_libdir_flag_spec is actually meaningless, as there is
+ # no search path for DLLs.
+ hardcode_libdir_flag_spec=' '
+ allow_undefined_flag=unsupported
+ # Tell ltmain to make .lib files, not .a files.
+ libext=lib
+ # Tell ltmain to make .dll files, not .so files.
+ shrext_cmds=".dll"
+ # FIXME: Setting linknames here is a bad hack.
+ archive_cmds='$CC -o $lib $libobjs $compiler_flags `$ECHO "X$deplibs" | $Xsed -e '\''s/ -lc$//'\''` -link -dll~linknames='
+ # The linker will automatically build a .lib file if we build a DLL.
+ old_archive_from_new_cmds='true'
+ # FIXME: Should let the user specify the lib program.
+ old_archive_cmds='lib -OUT:$oldlib$oldobjs$old_deplibs'
+ fix_srcfile_path='`cygpath -w "$srcfile"`'
+ enable_shared_with_static_runtimes=yes
+ ;;
+
+ darwin* | rhapsody*)
+
+
+ archive_cmds_need_lc=no
+ hardcode_direct=no
+ hardcode_automatic=yes
+ hardcode_shlibpath_var=unsupported
+ whole_archive_flag_spec=''
+ link_all_deplibs=yes
+ allow_undefined_flag="$_lt_dar_allow_undefined"
+ case $cc_basename in
+ ifort*) _lt_dar_can_shared=yes ;;
+ *) _lt_dar_can_shared=$GCC ;;
+ esac
+ if test "$_lt_dar_can_shared" = "yes"; then
+ output_verbose_link_cmd=echo
+ archive_cmds="\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring $_lt_dar_single_mod${_lt_dsymutil}"
+ module_cmds="\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dsymutil}"
+ archive_expsym_cmds="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring ${_lt_dar_single_mod}${_lt_dar_export_syms}${_lt_dsymutil}"
+ module_expsym_cmds="sed -e 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dar_export_syms}${_lt_dsymutil}"
+
+ else
+ ld_shlibs=no
+ fi
+
+ ;;
+
+ dgux*)
+ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_libdir_flag_spec='-L$libdir'
+ hardcode_shlibpath_var=no
+ ;;
+
+ freebsd1*)
+ ld_shlibs=no
+ ;;
+
+ # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor
+ # support. Future versions do this automatically, but an explicit c++rt0.o
+ # does not break anything, and helps significantly (at the cost of a little
+ # extra space).
+ freebsd2.2*)
+ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o'
+ hardcode_libdir_flag_spec='-R$libdir'
+ hardcode_direct=yes
+ hardcode_shlibpath_var=no
+ ;;
+
+ # Unfortunately, older versions of FreeBSD 2 do not have this feature.
+ freebsd2*)
+ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_direct=yes
+ hardcode_minus_L=yes
+ hardcode_shlibpath_var=no
+ ;;
+
+ # FreeBSD 3 and greater uses gcc -shared to do shared libraries.
+ freebsd* | dragonfly*)
+ archive_cmds='$CC -shared -o $lib $libobjs $deplibs $compiler_flags'
+ hardcode_libdir_flag_spec='-R$libdir'
+ hardcode_direct=yes
+ hardcode_shlibpath_var=no
+ ;;
+
+ hpux9*)
+ if test "$GCC" = yes; then
+ archive_cmds='$RM $output_objdir/$soname~$CC -shared -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ else
+ archive_cmds='$RM $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ fi
+ hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir'
+ hardcode_libdir_separator=:
+ hardcode_direct=yes
+
+ # hardcode_minus_L: Not really in the search PATH,
+ # but as the default location of the library.
+ hardcode_minus_L=yes
+ export_dynamic_flag_spec='${wl}-E'
+ ;;
+
+ hpux10*)
+ if test "$GCC" = yes -a "$with_gnu_ld" = no; then
+ archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ archive_cmds='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags'
+ fi
+ if test "$with_gnu_ld" = no; then
+ hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir'
+ hardcode_libdir_flag_spec_ld='+b $libdir'
+ hardcode_libdir_separator=:
+ hardcode_direct=yes
+ hardcode_direct_absolute=yes
+ export_dynamic_flag_spec='${wl}-E'
+ # hardcode_minus_L: Not really in the search PATH,
+ # but as the default location of the library.
+ hardcode_minus_L=yes
+ fi
+ ;;
+
+ hpux11*)
+ if test "$GCC" = yes -a "$with_gnu_ld" = no; then
+ case $host_cpu in
+ hppa*64*)
+ archive_cmds='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ ia64*)
+ archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ archive_cmds='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ else
+ case $host_cpu in
+ hppa*64*)
+ archive_cmds='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ ia64*)
+ archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ archive_cmds='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ fi
+ if test "$with_gnu_ld" = no; then
+ hardcode_libdir_flag_spec='${wl}+b ${wl}$libdir'
+ hardcode_libdir_separator=:
+
+ case $host_cpu in
+ hppa*64*|ia64*)
+ hardcode_direct=no
+ hardcode_shlibpath_var=no
+ ;;
+ *)
+ hardcode_direct=yes
+ hardcode_direct_absolute=yes
+ export_dynamic_flag_spec='${wl}-E'
+
+ # hardcode_minus_L: Not really in the search PATH,
+ # but as the default location of the library.
+ hardcode_minus_L=yes
+ ;;
+ esac
+ fi
+ ;;
+
+ irix5* | irix6* | nonstopux*)
+ if test "$GCC" = yes; then
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ # Try to use the -exported_symbol ld option, if it does not
+ # work, assume that -exports_file does not work either and
+ # implicitly export all symbols.
+ save_LDFLAGS="$LDFLAGS"
+ LDFLAGS="$LDFLAGS -shared ${wl}-exported_symbol ${wl}foo ${wl}-update_registry ${wl}/dev/null"
+ cat >conftest.$ac_ext <<_ACEOF
+int foo(void) {}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib'
+
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ LDFLAGS="$save_LDFLAGS"
+ else
+ archive_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ archive_expsym_cmds='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib'
+ fi
+ archive_cmds_need_lc='no'
+ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
+ hardcode_libdir_separator=:
+ inherit_rpath=yes
+ link_all_deplibs=yes
+ ;;
+
+ netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out
+ else
+ archive_cmds='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF
+ fi
+ hardcode_libdir_flag_spec='-R$libdir'
+ hardcode_direct=yes
+ hardcode_shlibpath_var=no
+ ;;
+
+ newsos6)
+ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_direct=yes
+ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
+ hardcode_libdir_separator=:
+ hardcode_shlibpath_var=no
+ ;;
+
+ *nto* | *qnx*)
+ ;;
+
+ openbsd*)
+ if test -f /usr/libexec/ld.so; then
+ hardcode_direct=yes
+ hardcode_shlibpath_var=no
+ hardcode_direct_absolute=yes
+ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols'
+ hardcode_libdir_flag_spec='${wl}-rpath,$libdir'
+ export_dynamic_flag_spec='${wl}-E'
+ else
+ case $host_os in
+ openbsd[01].* | openbsd2.[0-7] | openbsd2.[0-7].*)
+ archive_cmds='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_libdir_flag_spec='-R$libdir'
+ ;;
+ *)
+ archive_cmds='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
+ hardcode_libdir_flag_spec='${wl}-rpath,$libdir'
+ ;;
+ esac
+ fi
+ else
+ ld_shlibs=no
+ fi
+ ;;
+
+ os2*)
+ hardcode_libdir_flag_spec='-L$libdir'
+ hardcode_minus_L=yes
+ allow_undefined_flag=unsupported
+ archive_cmds='$ECHO "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$ECHO "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~$ECHO DATA >> $output_objdir/$libname.def~$ECHO " SINGLE NONSHARED" >> $output_objdir/$libname.def~$ECHO EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def'
+ old_archive_from_new_cmds='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def'
+ ;;
+
+ osf3*)
+ if test "$GCC" = yes; then
+ allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*'
+ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ else
+ allow_undefined_flag=' -expect_unresolved \*'
+ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ fi
+ archive_cmds_need_lc='no'
+ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
+ hardcode_libdir_separator=:
+ ;;
+
+ osf4* | osf5*) # as osf3* with the addition of -msym flag
+ if test "$GCC" = yes; then
+ allow_undefined_flag=' ${wl}-expect_unresolved ${wl}\*'
+ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir'
+ else
+ allow_undefined_flag=' -expect_unresolved \*'
+ archive_cmds='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ archive_expsym_cmds='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~
+ $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp'
+
+ # Both c and cxx compiler support -rpath directly
+ hardcode_libdir_flag_spec='-rpath $libdir'
+ fi
+ archive_cmds_need_lc='no'
+ hardcode_libdir_separator=:
+ ;;
+
+ solaris*)
+ no_undefined_flag=' -z defs'
+ if test "$GCC" = yes; then
+ wlarc='${wl}'
+ archive_cmds='$CC -shared ${wl}-z ${wl}text ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -shared ${wl}-z ${wl}text ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp'
+ else
+ case `$CC -V 2>&1` in
+ *"Compilers 5.0"*)
+ wlarc=''
+ archive_cmds='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$RM $lib.exp'
+ ;;
+ *)
+ wlarc='${wl}'
+ archive_cmds='$CC -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp'
+ ;;
+ esac
+ fi
+ hardcode_libdir_flag_spec='-R$libdir'
+ hardcode_shlibpath_var=no
+ case $host_os in
+ solaris2.[0-5] | solaris2.[0-5].*) ;;
+ *)
+ # The compiler driver will combine and reorder linker options,
+ # but understands `-z linker_flag'. GCC discards it without `$wl',
+ # but is careful enough not to reorder.
+ # Supported since Solaris 2.6 (maybe 2.5.1?)
+ if test "$GCC" = yes; then
+ whole_archive_flag_spec='${wl}-z ${wl}allextract$convenience ${wl}-z ${wl}defaultextract'
+ else
+ whole_archive_flag_spec='-z allextract$convenience -z defaultextract'
+ fi
+ ;;
+ esac
+ link_all_deplibs=yes
+ ;;
+
+ sunos4*)
+ if test "x$host_vendor" = xsequent; then
+ # Use $CC to link under sequent, because it throws in some extra .o
+ # files that make .init and .fini sections work.
+ archive_cmds='$CC -G ${wl}-h $soname -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ archive_cmds='$LD -assert pure-text -Bstatic -o $lib $libobjs $deplibs $linker_flags'
+ fi
+ hardcode_libdir_flag_spec='-L$libdir'
+ hardcode_direct=yes
+ hardcode_minus_L=yes
+ hardcode_shlibpath_var=no
+ ;;
+
+ sysv4)
+ case $host_vendor in
+ sni)
+ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_direct=yes # is this really true???
+ ;;
+ siemens)
+ ## LD is ld it makes a PLAMLIB
+ ## CC just makes a GrossModule.
+ archive_cmds='$LD -G -o $lib $libobjs $deplibs $linker_flags'
+ reload_cmds='$CC -r -o $output$reload_objs'
+ hardcode_direct=no
+ ;;
+ motorola)
+ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_direct=no #Motorola manual says yes, but my tests say they lie
+ ;;
+ esac
+ runpath_var='LD_RUN_PATH'
+ hardcode_shlibpath_var=no
+ ;;
+
+ sysv4.3*)
+ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_shlibpath_var=no
+ export_dynamic_flag_spec='-Bexport'
+ ;;
+
+ sysv4*MP*)
+ if test -d /usr/nec; then
+ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_shlibpath_var=no
+ runpath_var=LD_RUN_PATH
+ hardcode_runpath_var=yes
+ ld_shlibs=yes
+ fi
+ ;;
+
+ sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[01].[10]* | unixware7* | sco3.2v5.0.[024]*)
+ no_undefined_flag='${wl}-z,text'
+ archive_cmds_need_lc=no
+ hardcode_shlibpath_var=no
+ runpath_var='LD_RUN_PATH'
+
+ if test "$GCC" = yes; then
+ archive_cmds='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ archive_cmds='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ fi
+ ;;
+
+ sysv5* | sco3.2v5* | sco5v6*)
+ # Note: We can NOT use -z defs as we might desire, because we do not
+ # link with -lc, and that would cause any symbols used from libc to
+ # always be unresolved, which means just about no library would
+ # ever link correctly. If we're not using GNU ld we use -z text
+ # though, which does catch some bad symbols but isn't as heavy-handed
+ # as -z defs.
+ no_undefined_flag='${wl}-z,text'
+ allow_undefined_flag='${wl}-z,nodefs'
+ archive_cmds_need_lc=no
+ hardcode_shlibpath_var=no
+ hardcode_libdir_flag_spec='${wl}-R,$libdir'
+ hardcode_libdir_separator=':'
+ link_all_deplibs=yes
+ export_dynamic_flag_spec='${wl}-Bexport'
+ runpath_var='LD_RUN_PATH'
+
+ if test "$GCC" = yes; then
+ archive_cmds='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ archive_cmds='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ fi
+ ;;
+
+ uts4*)
+ archive_cmds='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ hardcode_libdir_flag_spec='-L$libdir'
+ hardcode_shlibpath_var=no
+ ;;
+
+ *)
+ ld_shlibs=no
+ ;;
+ esac
+
+ if test x$host_vendor = xsni; then
+ case $host in
+ sysv4 | sysv4.2uw2* | sysv4.3* | sysv5*)
+ export_dynamic_flag_spec='${wl}-Blargedynsym'
+ ;;
+ esac
+ fi
+ fi
+
+{ $as_echo "$as_me:$LINENO: result: $ld_shlibs" >&5
+$as_echo "$ld_shlibs" >&6; }
+test "$ld_shlibs" = no && can_build_shared=no
+
+with_gnu_ld=$with_gnu_ld
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+#
+# Do we need to explicitly link libc?
+#
+case "x$archive_cmds_need_lc" in
+x|xyes)
+ # Assume -lc should be added
+ archive_cmds_need_lc=yes
+
+ if test "$enable_shared" = yes && test "$GCC" = yes; then
+ case $archive_cmds in
+ *'~'*)
+ # FIXME: we may have to deal with multi-command sequences.
+ ;;
+ '$CC '*)
+ # Test whether the compiler implicitly links with -lc since on some
+ # systems, -lgcc has to come before -lc. If gcc already passes -lc
+ # to ld, don't add -lc before -lgcc.
+ { $as_echo "$as_me:$LINENO: checking whether -lc should be explicitly linked in" >&5
+$as_echo_n "checking whether -lc should be explicitly linked in... " >&6; }
+ $RM conftest*
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } 2>conftest.err; then
+ soname=conftest
+ lib=conftest
+ libobjs=conftest.$ac_objext
+ deplibs=
+ wl=$lt_prog_compiler_wl
+ pic_flag=$lt_prog_compiler_pic
+ compiler_flags=-v
+ linker_flags=-v
+ verstring=
+ output_objdir=.
+ libname=conftest
+ lt_save_allow_undefined_flag=$allow_undefined_flag
+ allow_undefined_flag=
+ if { (eval echo "$as_me:$LINENO: \"$archive_cmds 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1\"") >&5
+ (eval $archive_cmds 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+ then
+ archive_cmds_need_lc=no
+ else
+ archive_cmds_need_lc=yes
+ fi
+ allow_undefined_flag=$lt_save_allow_undefined_flag
+ else
+ cat conftest.err 1>&5
+ fi
+ $RM conftest*
+ { $as_echo "$as_me:$LINENO: result: $archive_cmds_need_lc" >&5
+$as_echo "$archive_cmds_need_lc" >&6; }
+ ;;
+ esac
+ fi
+ ;;
+esac
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking dynamic linker characteristics" >&5
+$as_echo_n "checking dynamic linker characteristics... " >&6; }
+
+if test "$GCC" = yes; then
+ case $host_os in
+ darwin*) lt_awk_arg="/^libraries:/,/LR/" ;;
+ *) lt_awk_arg="/^libraries:/" ;;
+ esac
+ lt_search_path_spec=`$CC -print-search-dirs | awk $lt_awk_arg | $SED -e "s/^libraries://" -e "s,=/,/,g"`
+ if $ECHO "$lt_search_path_spec" | $GREP ';' >/dev/null ; then
+ # if the path contains ";" then we assume it to be the separator
+ # otherwise default to the standard path separator (i.e. ":") - it is
+ # assumed that no part of a normal pathname contains ";" but that should
+ # okay in the real world where ";" in dirpaths is itself problematic.
+ lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e 's/;/ /g'`
+ else
+ lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
+ fi
+ # Ok, now we have the path, separated by spaces, we can step through it
+ # and add multilib dir if necessary.
+ lt_tmp_lt_search_path_spec=
+ lt_multi_os_dir=`$CC $CPPFLAGS $CFLAGS $LDFLAGS -print-multi-os-directory 2>/dev/null`
+ for lt_sys_path in $lt_search_path_spec; do
+ if test -d "$lt_sys_path/$lt_multi_os_dir"; then
+ lt_tmp_lt_search_path_spec="$lt_tmp_lt_search_path_spec $lt_sys_path/$lt_multi_os_dir"
+ else
+ test -d "$lt_sys_path" && \
+ lt_tmp_lt_search_path_spec="$lt_tmp_lt_search_path_spec $lt_sys_path"
+ fi
+ done
+ lt_search_path_spec=`$ECHO $lt_tmp_lt_search_path_spec | awk '
+BEGIN {RS=" "; FS="/|\n";} {
+ lt_foo="";
+ lt_count=0;
+ for (lt_i = NF; lt_i > 0; lt_i--) {
+ if ($lt_i != "" && $lt_i != ".") {
+ if ($lt_i == "..") {
+ lt_count++;
+ } else {
+ if (lt_count == 0) {
+ lt_foo="/" $lt_i lt_foo;
+ } else {
+ lt_count--;
+ }
+ }
+ }
+ }
+ if (lt_foo != "") { lt_freq[lt_foo]++; }
+ if (lt_freq[lt_foo] == 1) { print lt_foo; }
+}'`
+ sys_lib_search_path_spec=`$ECHO $lt_search_path_spec`
+else
+ sys_lib_search_path_spec="/lib /usr/lib /usr/local/lib"
+fi
+library_names_spec=
+libname_spec='lib$name'
+soname_spec=
+shrext_cmds=".so"
+postinstall_cmds=
+postuninstall_cmds=
+finish_cmds=
+finish_eval=
+shlibpath_var=
+shlibpath_overrides_runpath=unknown
+version_type=none
+dynamic_linker="$host_os ld.so"
+sys_lib_dlsearch_path_spec="/lib /usr/lib"
+need_lib_prefix=unknown
+hardcode_into_libs=no
+
+# when you set need_version to no, make sure it does not cause -set_version
+# flags to be left without arguments
+need_version=unknown
+
+case $host_os in
+aix3*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a'
+ shlibpath_var=LIBPATH
+
+ # AIX 3 has no versioning support, so we append a major version to the name.
+ soname_spec='${libname}${release}${shared_ext}$major'
+ ;;
+
+aix[4-9]*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ hardcode_into_libs=yes
+ if test "$host_cpu" = ia64; then
+ # AIX 5 supports IA64
+ library_names_spec='${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext}$versuffix $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ else
+ # With GCC up to 2.95.x, collect2 would create an import file
+ # for dependence libraries. The import file would start with
+ # the line `#! .'. This would cause the generated library to
+ # depend on `.', always an invalid library. This was fixed in
+ # development snapshots of GCC prior to 3.0.
+ case $host_os in
+ aix4 | aix4.[01] | aix4.[01].*)
+ if { echo '#if __GNUC__ > 2 || (__GNUC__ == 2 && __GNUC_MINOR__ >= 97)'
+ echo ' yes '
+ echo '#endif'; } | ${CC} -E - | $GREP yes > /dev/null; then
+ :
+ else
+ can_build_shared=no
+ fi
+ ;;
+ esac
+ # AIX (on Power*) has no versioning support, so currently we can not hardcode correct
+ # soname into executable. Probably we can add versioning support to
+ # collect2, so additional links can be useful in future.
+ if test "$aix_use_runtimelinking" = yes; then
+ # If using run time linking (on AIX 4.2 or later) use lib<name>.so
+ # instead of lib<name>.a to let people know that these are not
+ # typical AIX shared libraries.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ else
+ # We preserve .a as extension for shared libraries through AIX4.2
+ # and later when we are not doing run time linking.
+ library_names_spec='${libname}${release}.a $libname.a'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ fi
+ shlibpath_var=LIBPATH
+ fi
+ ;;
+
+amigaos*)
+ case $host_cpu in
+ powerpc)
+ # Since July 2007 AmigaOS4 officially supports .so libraries.
+ # When compiling the executable, add -use-dynld -Lsobjs: to the compileline.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ ;;
+ m68k)
+ library_names_spec='$libname.ixlibrary $libname.a'
+ # Create ${libname}_ixlibrary.a entries in /sys/libs.
+ finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`$ECHO "X$lib" | $Xsed -e '\''s%^.*/\([^/]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
+ ;;
+ esac
+ ;;
+
+beos*)
+ library_names_spec='${libname}${shared_ext}'
+ dynamic_linker="$host_os ld.so"
+ shlibpath_var=LIBRARY_PATH
+ ;;
+
+bsdi[45]*)
+ version_type=linux
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ sys_lib_search_path_spec="/shlib /usr/lib /usr/X11/lib /usr/contrib/lib /lib /usr/local/lib"
+ sys_lib_dlsearch_path_spec="/shlib /usr/lib /usr/local/lib"
+ # the default ld.so.conf also contains /usr/contrib/lib and
+ # /usr/X11R6/lib (/usr/X11 is a link to /usr/X11R6), but let us allow
+ # libtool to hard-code these into programs
+ ;;
+
+cygwin* | mingw* | pw32* | cegcc*)
+ version_type=windows
+ shrext_cmds=".dll"
+ need_version=no
+ need_lib_prefix=no
+
+ case $GCC,$host_os in
+ yes,cygwin* | yes,mingw* | yes,pw32* | yes,cegcc*)
+ library_names_spec='$libname.dll.a'
+ # DLL is installed to $(libdir)/../bin by postinstall_cmds
+ postinstall_cmds='base_file=`basename \${file}`~
+ dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
+ dldir=$destdir/`dirname \$dlpath`~
+ test -d \$dldir || mkdir -p \$dldir~
+ $install_prog $dir/$dlname \$dldir/$dlname~
+ chmod a+x \$dldir/$dlname~
+ if test -n '\''$stripme'\'' && test -n '\''$striplib'\''; then
+ eval '\''$striplib \$dldir/$dlname'\'' || exit \$?;
+ fi'
+ postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
+ dlpath=$dir/\$dldll~
+ $RM \$dlpath'
+ shlibpath_overrides_runpath=yes
+
+ case $host_os in
+ cygwin*)
+ # Cygwin DLLs use 'cyg' prefix rather than 'lib'
+ soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
+ sys_lib_search_path_spec="/usr/lib /lib/w32api /lib /usr/local/lib"
+ ;;
+ mingw* | cegcc*)
+ # MinGW DLLs use traditional 'lib' prefix
+ soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
+ sys_lib_search_path_spec=`$CC -print-search-dirs | $GREP "^libraries:" | $SED -e "s/^libraries://" -e "s,=/,/,g"`
+ if $ECHO "$sys_lib_search_path_spec" | $GREP ';[c-zC-Z]:/' >/dev/null; then
+ # It is most probably a Windows format PATH printed by
+ # mingw gcc, but we are running on Cygwin. Gcc prints its search
+ # path with ; separators, and with drive letters. We can handle the
+ # drive letters (cygwin fileutils understands them), so leave them,
+ # especially as we might pass files found there to a mingw objdump,
+ # which wouldn't understand a cygwinified path. Ahh.
+ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
+ else
+ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
+ fi
+ ;;
+ pw32*)
+ # pw32 DLLs use 'pw' prefix rather than 'lib'
+ library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
+ ;;
+ esac
+ ;;
+
+ *)
+ library_names_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext} $libname.lib'
+ ;;
+ esac
+ dynamic_linker='Win32 ld.exe'
+ # FIXME: first we should search . and the directory the executable is in
+ shlibpath_var=PATH
+ ;;
+
+darwin* | rhapsody*)
+ dynamic_linker="$host_os dyld"
+ version_type=darwin
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${major}$shared_ext ${libname}$shared_ext'
+ soname_spec='${libname}${release}${major}$shared_ext'
+ shlibpath_overrides_runpath=yes
+ shlibpath_var=DYLD_LIBRARY_PATH
+ shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
+
+ sys_lib_search_path_spec="$sys_lib_search_path_spec /usr/local/lib"
+ sys_lib_dlsearch_path_spec='/usr/local/lib /lib /usr/lib'
+ ;;
+
+dgux*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ ;;
+
+freebsd1*)
+ dynamic_linker=no
+ ;;
+
+freebsd* | dragonfly*)
+ # DragonFly does not have aout. When/if they implement a new
+ # versioning mechanism, adjust this.
+ if test -x /usr/bin/objformat; then
+ objformat=`/usr/bin/objformat`
+ else
+ case $host_os in
+ freebsd[123]*) objformat=aout ;;
+ *) objformat=elf ;;
+ esac
+ fi
+ version_type=freebsd-$objformat
+ case $version_type in
+ freebsd-elf*)
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}'
+ need_version=no
+ need_lib_prefix=no
+ ;;
+ freebsd-*)
+ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname${shared_ext}$versuffix'
+ need_version=yes
+ ;;
+ esac
+ shlibpath_var=LD_LIBRARY_PATH
+ case $host_os in
+ freebsd2*)
+ shlibpath_overrides_runpath=yes
+ ;;
+ freebsd3.[01]* | freebsdelf3.[01]*)
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+ freebsd3.[2-9]* | freebsdelf3.[2-9]* | \
+ freebsd4.[0-5] | freebsdelf4.[0-5] | freebsd4.1.1 | freebsdelf4.1.1)
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+ *) # from 4.6 on, and DragonFly
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+ esac
+ ;;
+
+gnu*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ hardcode_into_libs=yes
+ ;;
+
+hpux9* | hpux10* | hpux11*)
+ # Give a soname corresponding to the major version so that dld.sl refuses to
+ # link against other versions.
+ version_type=sunos
+ need_lib_prefix=no
+ need_version=no
+ case $host_cpu in
+ ia64*)
+ shrext_cmds='.so'
+ hardcode_into_libs=yes
+ dynamic_linker="$host_os dld.so"
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ if test "X$HPUX_IA64_MODE" = X32; then
+ sys_lib_search_path_spec="/usr/lib/hpux32 /usr/local/lib/hpux32 /usr/local/lib"
+ else
+ sys_lib_search_path_spec="/usr/lib/hpux64 /usr/local/lib/hpux64"
+ fi
+ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec
+ ;;
+ hppa*64*)
+ shrext_cmds='.sl'
+ hardcode_into_libs=yes
+ dynamic_linker="$host_os dld.sl"
+ shlibpath_var=LD_LIBRARY_PATH # How should we handle SHLIB_PATH
+ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ sys_lib_search_path_spec="/usr/lib/pa20_64 /usr/ccs/lib/pa20_64"
+ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec
+ ;;
+ *)
+ shrext_cmds='.sl'
+ dynamic_linker="$host_os dld.sl"
+ shlibpath_var=SHLIB_PATH
+ shlibpath_overrides_runpath=no # +s is required to enable SHLIB_PATH
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ ;;
+ esac
+ # HP-UX runs *really* slowly unless shared libraries are mode 555.
+ postinstall_cmds='chmod 555 $lib'
+ ;;
+
+interix[3-9]*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ dynamic_linker='Interix 3.x ld.so.1 (PE, like ELF)'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
+irix5* | irix6* | nonstopux*)
+ case $host_os in
+ nonstopux*) version_type=nonstopux ;;
+ *)
+ if test "$lt_cv_prog_gnu_ld" = yes; then
+ version_type=linux
+ else
+ version_type=irix
+ fi ;;
+ esac
+ need_lib_prefix=no
+ need_version=no
+ soname_spec='${libname}${release}${shared_ext}$major'
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}'
+ case $host_os in
+ irix5* | nonstopux*)
+ libsuff= shlibsuff=
+ ;;
+ *)
+ case $LD in # libtool.m4 will add one of these switches to LD
+ *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ")
+ libsuff= shlibsuff= libmagic=32-bit;;
+ *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ")
+ libsuff=32 shlibsuff=N32 libmagic=N32;;
+ *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ")
+ libsuff=64 shlibsuff=64 libmagic=64-bit;;
+ *) libsuff= shlibsuff= libmagic=never-match;;
+ esac
+ ;;
+ esac
+ shlibpath_var=LD_LIBRARY${shlibsuff}_PATH
+ shlibpath_overrides_runpath=no
+ sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}"
+ sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}"
+ hardcode_into_libs=yes
+ ;;
+
+# No shared lib support for Linux oldld, aout, or coff.
+linux*oldld* | linux*aout* | linux*coff*)
+ dynamic_linker=no
+ ;;
+
+# This must be Linux ELF.
+linux* | k*bsd*-gnu)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ # Some binutils ld are patched to set DT_RUNPATH
+ save_LDFLAGS=$LDFLAGS
+ save_libdir=$libdir
+ eval "libdir=/foo; wl=\"$lt_prog_compiler_wl\"; \
+ LDFLAGS=\"\$LDFLAGS $hardcode_libdir_flag_spec\""
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ if ($OBJDUMP -p conftest$ac_exeext) 2>/dev/null | grep "RUNPATH.*$libdir" >/dev/null; then
+ shlibpath_overrides_runpath=yes
+fi
+
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ LDFLAGS=$save_LDFLAGS
+ libdir=$save_libdir
+
+ # This implies no fast_install, which is unacceptable.
+ # Some rework will be needed to allow for fast_install
+ # before this can be enabled.
+ hardcode_into_libs=yes
+
+ # Add ABI-specific directories to the system library path.
+ sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /lib /usr/lib"
+
+ # Append ld.so.conf contents to the search path
+ if test -f /etc/ld.so.conf; then
+ lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+ sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
+ fi
+
+ # We used to test for /lib/ld.so.1 and disable shared libraries on
+ # powerpc, because MkLinux only supported shared libraries with the
+ # GNU dynamic linker. Since this was broken with cross compilers,
+ # most powerpc-linux boxes support dynamic linking these days and
+ # people can always --disable-shared, the test was removed, and we
+ # assume the GNU/Linux dynamic linker is in use.
+ dynamic_linker='GNU/Linux ld.so'
+ ;;
+
+netbsd*)
+ version_type=sunos
+ need_lib_prefix=no
+ need_version=no
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir'
+ dynamic_linker='NetBSD (a.out) ld.so'
+ else
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ dynamic_linker='NetBSD ld.elf_so'
+ fi
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+
+newsos6)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ ;;
+
+*nto* | *qnx*)
+ version_type=qnx
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ dynamic_linker='ldqnx.so'
+ ;;
+
+openbsd*)
+ version_type=sunos
+ sys_lib_dlsearch_path_spec="/usr/lib"
+ need_lib_prefix=no
+ # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs.
+ case $host_os in
+ openbsd3.3 | openbsd3.3.*) need_version=yes ;;
+ *) need_version=no ;;
+ esac
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ case $host_os in
+ openbsd2.[89] | openbsd2.[89].*)
+ shlibpath_overrides_runpath=no
+ ;;
+ *)
+ shlibpath_overrides_runpath=yes
+ ;;
+ esac
+ else
+ shlibpath_overrides_runpath=yes
+ fi
+ ;;
+
+os2*)
+ libname_spec='$name'
+ shrext_cmds=".dll"
+ need_lib_prefix=no
+ library_names_spec='$libname${shared_ext} $libname.a'
+ dynamic_linker='OS/2 ld.exe'
+ shlibpath_var=LIBPATH
+ ;;
+
+osf3* | osf4* | osf5*)
+ version_type=osf
+ need_lib_prefix=no
+ need_version=no
+ soname_spec='${libname}${release}${shared_ext}$major'
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ sys_lib_search_path_spec="/usr/shlib /usr/ccs/lib /usr/lib/cmplrs/cc /usr/lib /usr/local/lib /var/shlib"
+ sys_lib_dlsearch_path_spec="$sys_lib_search_path_spec"
+ ;;
+
+rdos*)
+ dynamic_linker=no
+ ;;
+
+solaris*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ # ldd complains unless libraries are executable
+ postinstall_cmds='chmod +x $lib'
+ ;;
+
+sunos4*)
+ version_type=sunos
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/usr/etc" ldconfig $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ if test "$with_gnu_ld" = yes; then
+ need_lib_prefix=no
+ fi
+ need_version=yes
+ ;;
+
+sysv4 | sysv4.3*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ case $host_vendor in
+ sni)
+ shlibpath_overrides_runpath=no
+ need_lib_prefix=no
+ runpath_var=LD_RUN_PATH
+ ;;
+ siemens)
+ need_lib_prefix=no
+ ;;
+ motorola)
+ need_lib_prefix=no
+ need_version=no
+ shlibpath_overrides_runpath=no
+ sys_lib_search_path_spec='/lib /usr/lib /usr/ccs/lib'
+ ;;
+ esac
+ ;;
+
+sysv4*MP*)
+ if test -d /usr/nec ;then
+ version_type=linux
+ library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}'
+ soname_spec='$libname${shared_ext}.$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ fi
+ ;;
+
+sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*)
+ version_type=freebsd-elf
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ if test "$with_gnu_ld" = yes; then
+ sys_lib_search_path_spec='/usr/local/lib /usr/gnu/lib /usr/ccs/lib /usr/lib /lib'
+ else
+ sys_lib_search_path_spec='/usr/ccs/lib /usr/lib'
+ case $host_os in
+ sco3.2v5*)
+ sys_lib_search_path_spec="$sys_lib_search_path_spec /lib"
+ ;;
+ esac
+ fi
+ sys_lib_dlsearch_path_spec='/usr/lib'
+ ;;
+
+tpf*)
+ # TPF is a cross-target only. Preferred cross-host = GNU/Linux.
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
+uts4*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ ;;
+
+*)
+ dynamic_linker=no
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: result: $dynamic_linker" >&5
+$as_echo "$dynamic_linker" >&6; }
+test "$dynamic_linker" = no && can_build_shared=no
+
+variables_saved_for_relink="PATH $shlibpath_var $runpath_var"
+if test "$GCC" = yes; then
+ variables_saved_for_relink="$variables_saved_for_relink GCC_EXEC_PREFIX COMPILER_PATH LIBRARY_PATH"
+fi
+
+if test "${lt_cv_sys_lib_search_path_spec+set}" = set; then
+ sys_lib_search_path_spec="$lt_cv_sys_lib_search_path_spec"
+fi
+if test "${lt_cv_sys_lib_dlsearch_path_spec+set}" = set; then
+ sys_lib_dlsearch_path_spec="$lt_cv_sys_lib_dlsearch_path_spec"
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking how to hardcode library paths into programs" >&5
+$as_echo_n "checking how to hardcode library paths into programs... " >&6; }
+hardcode_action=
+if test -n "$hardcode_libdir_flag_spec" ||
+ test -n "$runpath_var" ||
+ test "X$hardcode_automatic" = "Xyes" ; then
+
+ # We can hardcode non-existent directories.
+ if test "$hardcode_direct" != no &&
+ # If the only mechanism to avoid hardcoding is shlibpath_var, we
+ # have to relink, otherwise we might link with an installed library
+ # when we should be linking with a yet-to-be-installed one
+ ## test "$_LT_TAGVAR(hardcode_shlibpath_var, )" != no &&
+ test "$hardcode_minus_L" != no; then
+ # Linking always hardcodes the temporary library directory.
+ hardcode_action=relink
+ else
+ # We can link without hardcoding, and we can hardcode nonexisting dirs.
+ hardcode_action=immediate
+ fi
+else
+ # We cannot hardcode anything, or else we can only hardcode existing
+ # directories.
+ hardcode_action=unsupported
+fi
+{ $as_echo "$as_me:$LINENO: result: $hardcode_action" >&5
+$as_echo "$hardcode_action" >&6; }
+
+if test "$hardcode_action" = relink ||
+ test "$inherit_rpath" = yes; then
+ # Fast installation is not supported
+ enable_fast_install=no
+elif test "$shlibpath_overrides_runpath" = yes ||
+ test "$enable_shared" = no; then
+ # Fast installation is not necessary
+ enable_fast_install=needless
+fi
+
+
+
+
+
+
+ if test "x$enable_dlopen" != xyes; then
+ enable_dlopen=unknown
+ enable_dlopen_self=unknown
+ enable_dlopen_self_static=unknown
+else
+ lt_cv_dlopen=no
+ lt_cv_dlopen_libs=
+
+ case $host_os in
+ beos*)
+ lt_cv_dlopen="load_add_on"
+ lt_cv_dlopen_libs=
+ lt_cv_dlopen_self=yes
+ ;;
+
+ mingw* | pw32* | cegcc*)
+ lt_cv_dlopen="LoadLibrary"
+ lt_cv_dlopen_libs=
+ ;;
+
+ cygwin*)
+ lt_cv_dlopen="dlopen"
+ lt_cv_dlopen_libs=
+ ;;
+
+ darwin*)
+ # if libdl is installed we need to link against it
+ { $as_echo "$as_me:$LINENO: checking for dlopen in -ldl" >&5
+$as_echo_n "checking for dlopen in -ldl... " >&6; }
+if test "${ac_cv_lib_dl_dlopen+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-ldl $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dlopen ();
+int
+main ()
+{
+return dlopen ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_dl_dlopen=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_dl_dlopen=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dl_dlopen" >&5
+$as_echo "$ac_cv_lib_dl_dlopen" >&6; }
+if test "x$ac_cv_lib_dl_dlopen" = x""yes; then
+ lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl"
+else
+
+ lt_cv_dlopen="dyld"
+ lt_cv_dlopen_libs=
+ lt_cv_dlopen_self=yes
+
+fi
+
+ ;;
+
+ *)
+ { $as_echo "$as_me:$LINENO: checking for shl_load" >&5
+$as_echo_n "checking for shl_load... " >&6; }
+if test "${ac_cv_func_shl_load+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define shl_load to an innocuous variant, in case <limits.h> declares shl_load.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define shl_load innocuous_shl_load
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char shl_load (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef shl_load
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char shl_load ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_shl_load || defined __stub___shl_load
+choke me
+#endif
+
+int
+main ()
+{
+return shl_load ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_func_shl_load=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_func_shl_load=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_shl_load" >&5
+$as_echo "$ac_cv_func_shl_load" >&6; }
+if test "x$ac_cv_func_shl_load" = x""yes; then
+ lt_cv_dlopen="shl_load"
+else
+ { $as_echo "$as_me:$LINENO: checking for shl_load in -ldld" >&5
+$as_echo_n "checking for shl_load in -ldld... " >&6; }
+if test "${ac_cv_lib_dld_shl_load+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-ldld $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char shl_load ();
+int
+main ()
+{
+return shl_load ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_dld_shl_load=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_dld_shl_load=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dld_shl_load" >&5
+$as_echo "$ac_cv_lib_dld_shl_load" >&6; }
+if test "x$ac_cv_lib_dld_shl_load" = x""yes; then
+ lt_cv_dlopen="shl_load" lt_cv_dlopen_libs="-ldld"
+else
+ { $as_echo "$as_me:$LINENO: checking for dlopen" >&5
+$as_echo_n "checking for dlopen... " >&6; }
+if test "${ac_cv_func_dlopen+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define dlopen to an innocuous variant, in case <limits.h> declares dlopen.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define dlopen innocuous_dlopen
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char dlopen (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef dlopen
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dlopen ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_dlopen || defined __stub___dlopen
+choke me
+#endif
+
+int
+main ()
+{
+return dlopen ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_func_dlopen=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_func_dlopen=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_dlopen" >&5
+$as_echo "$ac_cv_func_dlopen" >&6; }
+if test "x$ac_cv_func_dlopen" = x""yes; then
+ lt_cv_dlopen="dlopen"
+else
+ { $as_echo "$as_me:$LINENO: checking for dlopen in -ldl" >&5
+$as_echo_n "checking for dlopen in -ldl... " >&6; }
+if test "${ac_cv_lib_dl_dlopen+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-ldl $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dlopen ();
+int
+main ()
+{
+return dlopen ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_dl_dlopen=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_dl_dlopen=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dl_dlopen" >&5
+$as_echo "$ac_cv_lib_dl_dlopen" >&6; }
+if test "x$ac_cv_lib_dl_dlopen" = x""yes; then
+ lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl"
+else
+ { $as_echo "$as_me:$LINENO: checking for dlopen in -lsvld" >&5
+$as_echo_n "checking for dlopen in -lsvld... " >&6; }
+if test "${ac_cv_lib_svld_dlopen+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lsvld $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dlopen ();
+int
+main ()
+{
+return dlopen ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_svld_dlopen=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_svld_dlopen=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_svld_dlopen" >&5
+$as_echo "$ac_cv_lib_svld_dlopen" >&6; }
+if test "x$ac_cv_lib_svld_dlopen" = x""yes; then
+ lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-lsvld"
+else
+ { $as_echo "$as_me:$LINENO: checking for dld_link in -ldld" >&5
+$as_echo_n "checking for dld_link in -ldld... " >&6; }
+if test "${ac_cv_lib_dld_dld_link+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-ldld $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char dld_link ();
+int
+main ()
+{
+return dld_link ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_dld_dld_link=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_dld_dld_link=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dld_dld_link" >&5
+$as_echo "$ac_cv_lib_dld_dld_link" >&6; }
+if test "x$ac_cv_lib_dld_dld_link" = x""yes; then
+ lt_cv_dlopen="dld_link" lt_cv_dlopen_libs="-ldld"
+fi
+
+
+fi
+
+
+fi
+
+
+fi
+
+
+fi
+
+
+fi
+
+ ;;
+ esac
+
+ if test "x$lt_cv_dlopen" != xno; then
+ enable_dlopen=yes
+ else
+ enable_dlopen=no
+ fi
+
+ case $lt_cv_dlopen in
+ dlopen)
+ save_CPPFLAGS="$CPPFLAGS"
+ test "x$ac_cv_header_dlfcn_h" = xyes && CPPFLAGS="$CPPFLAGS -DHAVE_DLFCN_H"
+
+ save_LDFLAGS="$LDFLAGS"
+ wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $export_dynamic_flag_spec\"
+
+ save_LIBS="$LIBS"
+ LIBS="$lt_cv_dlopen_libs $LIBS"
+
+ { $as_echo "$as_me:$LINENO: checking whether a program can dlopen itself" >&5
+$as_echo_n "checking whether a program can dlopen itself... " >&6; }
+if test "${lt_cv_dlopen_self+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then :
+ lt_cv_dlopen_self=cross
+else
+ lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
+ lt_status=$lt_dlunknown
+ cat > conftest.$ac_ext <<_LT_EOF
+#line 12653 "configure"
+#include "confdefs.h"
+
+#if HAVE_DLFCN_H
+#include <dlfcn.h>
+#endif
+
+#include <stdio.h>
+
+#ifdef RTLD_GLOBAL
+# define LT_DLGLOBAL RTLD_GLOBAL
+#else
+# ifdef DL_GLOBAL
+# define LT_DLGLOBAL DL_GLOBAL
+# else
+# define LT_DLGLOBAL 0
+# endif
+#endif
+
+/* We may have to define LT_DLLAZY_OR_NOW in the command line if we
+ find out it does not work in some platform. */
+#ifndef LT_DLLAZY_OR_NOW
+# ifdef RTLD_LAZY
+# define LT_DLLAZY_OR_NOW RTLD_LAZY
+# else
+# ifdef DL_LAZY
+# define LT_DLLAZY_OR_NOW DL_LAZY
+# else
+# ifdef RTLD_NOW
+# define LT_DLLAZY_OR_NOW RTLD_NOW
+# else
+# ifdef DL_NOW
+# define LT_DLLAZY_OR_NOW DL_NOW
+# else
+# define LT_DLLAZY_OR_NOW 0
+# endif
+# endif
+# endif
+# endif
+#endif
+
+void fnord() { int i=42;}
+int main ()
+{
+ void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW);
+ int status = $lt_dlunknown;
+
+ if (self)
+ {
+ if (dlsym (self,"fnord")) status = $lt_dlno_uscore;
+ else if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore;
+ /* dlclose (self); */
+ }
+ else
+ puts (dlerror ());
+
+ return status;
+}
+_LT_EOF
+ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+ (eval $ac_link) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && test -s conftest${ac_exeext} 2>/dev/null; then
+ (./conftest; exit; ) >&5 2>/dev/null
+ lt_status=$?
+ case x$lt_status in
+ x$lt_dlno_uscore) lt_cv_dlopen_self=yes ;;
+ x$lt_dlneed_uscore) lt_cv_dlopen_self=yes ;;
+ x$lt_dlunknown|x*) lt_cv_dlopen_self=no ;;
+ esac
+ else :
+ # compilation failed
+ lt_cv_dlopen_self=no
+ fi
+fi
+rm -fr conftest*
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_dlopen_self" >&5
+$as_echo "$lt_cv_dlopen_self" >&6; }
+
+ if test "x$lt_cv_dlopen_self" = xyes; then
+ wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $lt_prog_compiler_static\"
+ { $as_echo "$as_me:$LINENO: checking whether a statically linked program can dlopen itself" >&5
+$as_echo_n "checking whether a statically linked program can dlopen itself... " >&6; }
+if test "${lt_cv_dlopen_self_static+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then :
+ lt_cv_dlopen_self_static=cross
+else
+ lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
+ lt_status=$lt_dlunknown
+ cat > conftest.$ac_ext <<_LT_EOF
+#line 12749 "configure"
+#include "confdefs.h"
+
+#if HAVE_DLFCN_H
+#include <dlfcn.h>
+#endif
+
+#include <stdio.h>
+
+#ifdef RTLD_GLOBAL
+# define LT_DLGLOBAL RTLD_GLOBAL
+#else
+# ifdef DL_GLOBAL
+# define LT_DLGLOBAL DL_GLOBAL
+# else
+# define LT_DLGLOBAL 0
+# endif
+#endif
+
+/* We may have to define LT_DLLAZY_OR_NOW in the command line if we
+ find out it does not work in some platform. */
+#ifndef LT_DLLAZY_OR_NOW
+# ifdef RTLD_LAZY
+# define LT_DLLAZY_OR_NOW RTLD_LAZY
+# else
+# ifdef DL_LAZY
+# define LT_DLLAZY_OR_NOW DL_LAZY
+# else
+# ifdef RTLD_NOW
+# define LT_DLLAZY_OR_NOW RTLD_NOW
+# else
+# ifdef DL_NOW
+# define LT_DLLAZY_OR_NOW DL_NOW
+# else
+# define LT_DLLAZY_OR_NOW 0
+# endif
+# endif
+# endif
+# endif
+#endif
+
+void fnord() { int i=42;}
+int main ()
+{
+ void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW);
+ int status = $lt_dlunknown;
+
+ if (self)
+ {
+ if (dlsym (self,"fnord")) status = $lt_dlno_uscore;
+ else if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore;
+ /* dlclose (self); */
+ }
+ else
+ puts (dlerror ());
+
+ return status;
+}
+_LT_EOF
+ if { (eval echo "$as_me:$LINENO: \"$ac_link\"") >&5
+ (eval $ac_link) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && test -s conftest${ac_exeext} 2>/dev/null; then
+ (./conftest; exit; ) >&5 2>/dev/null
+ lt_status=$?
+ case x$lt_status in
+ x$lt_dlno_uscore) lt_cv_dlopen_self_static=yes ;;
+ x$lt_dlneed_uscore) lt_cv_dlopen_self_static=yes ;;
+ x$lt_dlunknown|x*) lt_cv_dlopen_self_static=no ;;
+ esac
+ else :
+ # compilation failed
+ lt_cv_dlopen_self_static=no
+ fi
+fi
+rm -fr conftest*
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_dlopen_self_static" >&5
+$as_echo "$lt_cv_dlopen_self_static" >&6; }
+ fi
+
+ CPPFLAGS="$save_CPPFLAGS"
+ LDFLAGS="$save_LDFLAGS"
+ LIBS="$save_LIBS"
+ ;;
+ esac
+
+ case $lt_cv_dlopen_self in
+ yes|no) enable_dlopen_self=$lt_cv_dlopen_self ;;
+ *) enable_dlopen_self=unknown ;;
+ esac
+
+ case $lt_cv_dlopen_self_static in
+ yes|no) enable_dlopen_self_static=$lt_cv_dlopen_self_static ;;
+ *) enable_dlopen_self_static=unknown ;;
+ esac
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+striplib=
+old_striplib=
+{ $as_echo "$as_me:$LINENO: checking whether stripping libraries is possible" >&5
+$as_echo_n "checking whether stripping libraries is possible... " >&6; }
+if test -n "$STRIP" && $STRIP -V 2>&1 | $GREP "GNU strip" >/dev/null; then
+ test -z "$old_striplib" && old_striplib="$STRIP --strip-debug"
+ test -z "$striplib" && striplib="$STRIP --strip-unneeded"
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+else
+# FIXME - insert some real tests, host_os isn't really good enough
+ case $host_os in
+ darwin*)
+ if test -n "$STRIP" ; then
+ striplib="$STRIP -x"
+ old_striplib="$STRIP -S"
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ ;;
+ *)
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ ;;
+ esac
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+ # Report which library types will actually be built
+ { $as_echo "$as_me:$LINENO: checking if libtool supports shared libraries" >&5
+$as_echo_n "checking if libtool supports shared libraries... " >&6; }
+ { $as_echo "$as_me:$LINENO: result: $can_build_shared" >&5
+$as_echo "$can_build_shared" >&6; }
+
+ { $as_echo "$as_me:$LINENO: checking whether to build shared libraries" >&5
+$as_echo_n "checking whether to build shared libraries... " >&6; }
+ test "$can_build_shared" = "no" && enable_shared=no
+
+ # On AIX, shared libraries and static libraries use the same namespace, and
+ # are all built from PIC.
+ case $host_os in
+ aix3*)
+ test "$enable_shared" = yes && enable_static=no
+ if test -n "$RANLIB"; then
+ archive_cmds="$archive_cmds~\$RANLIB \$lib"
+ postinstall_cmds='$RANLIB $lib'
+ fi
+ ;;
+
+ aix[4-9]*)
+ if test "$host_cpu" != ia64 && test "$aix_use_runtimelinking" = no ; then
+ test "$enable_shared" = yes && enable_static=no
+ fi
+ ;;
+ esac
+ { $as_echo "$as_me:$LINENO: result: $enable_shared" >&5
+$as_echo "$enable_shared" >&6; }
+
+ { $as_echo "$as_me:$LINENO: checking whether to build static libraries" >&5
+$as_echo_n "checking whether to build static libraries... " >&6; }
+ # Make sure either enable_shared or enable_static is yes.
+ test "$enable_shared" = yes || enable_static=yes
+ { $as_echo "$as_me:$LINENO: result: $enable_static" >&5
+$as_echo "$enable_static" >&6; }
+
+
+
+
+fi
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+CC="$lt_save_CC"
+
+
+ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+archive_cmds_need_lc_CXX=no
+allow_undefined_flag_CXX=
+always_export_symbols_CXX=no
+archive_expsym_cmds_CXX=
+compiler_needs_object_CXX=no
+export_dynamic_flag_spec_CXX=
+hardcode_direct_CXX=no
+hardcode_direct_absolute_CXX=no
+hardcode_libdir_flag_spec_CXX=
+hardcode_libdir_flag_spec_ld_CXX=
+hardcode_libdir_separator_CXX=
+hardcode_minus_L_CXX=no
+hardcode_shlibpath_var_CXX=unsupported
+hardcode_automatic_CXX=no
+inherit_rpath_CXX=no
+module_cmds_CXX=
+module_expsym_cmds_CXX=
+link_all_deplibs_CXX=unknown
+old_archive_cmds_CXX=$old_archive_cmds
+no_undefined_flag_CXX=
+whole_archive_flag_spec_CXX=
+enable_shared_with_static_runtimes_CXX=no
+
+# Source file extension for C++ test sources.
+ac_ext=cpp
+
+# Object file extension for compiled C++ test sources.
+objext=o
+objext_CXX=$objext
+
+# No sense in running all these tests if we already determined that
+# the CXX compiler isn't working. Some variables (like enable_shared)
+# are currently assumed to apply to all compilers on this platform,
+# and will be corrupted by setting them based on a non-working compiler.
+if test "$_lt_caught_CXX_error" != yes; then
+ # Code to be used in simple compile tests
+ lt_simple_compile_test_code="int some_variable = 0;"
+
+ # Code to be used in simple link tests
+ lt_simple_link_test_code='int main(int, char *[]) { return(0); }'
+
+ # ltmain only uses $CC for tagged configurations so make sure $CC is set.
+
+
+
+
+
+
+# If no C compiler was specified, use CC.
+LTCC=${LTCC-"$CC"}
+
+# If no C compiler flags were specified, use CFLAGS.
+LTCFLAGS=${LTCFLAGS-"$CFLAGS"}
+
+# Allow CC to be a program name with arguments.
+compiler=$CC
+
+
+ # save warnings/boilerplate of simple test code
+ ac_outfile=conftest.$ac_objext
+echo "$lt_simple_compile_test_code" >conftest.$ac_ext
+eval "$ac_compile" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err
+_lt_compiler_boilerplate=`cat conftest.err`
+$RM conftest*
+
+ ac_outfile=conftest.$ac_objext
+echo "$lt_simple_link_test_code" >conftest.$ac_ext
+eval "$ac_link" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err
+_lt_linker_boilerplate=`cat conftest.err`
+$RM -r conftest*
+
+
+ # Allow CC to be a program name with arguments.
+ lt_save_CC=$CC
+ lt_save_LD=$LD
+ lt_save_GCC=$GCC
+ GCC=$GXX
+ lt_save_with_gnu_ld=$with_gnu_ld
+ lt_save_path_LD=$lt_cv_path_LD
+ if test -n "${lt_cv_prog_gnu_ldcxx+set}"; then
+ lt_cv_prog_gnu_ld=$lt_cv_prog_gnu_ldcxx
+ else
+ $as_unset lt_cv_prog_gnu_ld
+ fi
+ if test -n "${lt_cv_path_LDCXX+set}"; then
+ lt_cv_path_LD=$lt_cv_path_LDCXX
+ else
+ $as_unset lt_cv_path_LD
+ fi
+ test -z "${LDCXX+set}" || LD=$LDCXX
+ CC=${CXX-"c++"}
+ compiler=$CC
+ compiler_CXX=$CC
+ for cc_temp in $compiler""; do
+ case $cc_temp in
+ compile | *[\\/]compile | ccache | *[\\/]ccache ) ;;
+ distcc | *[\\/]distcc | purify | *[\\/]purify ) ;;
+ \-*) ;;
+ *) break;;
+ esac
+done
+cc_basename=`$ECHO "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"`
+
+
+ if test -n "$compiler"; then
+ # We don't want -fno-exception when compiling C++ code, so set the
+ # no_builtin_flag separately
+ if test "$GXX" = yes; then
+ lt_prog_compiler_no_builtin_flag_CXX=' -fno-builtin'
+ else
+ lt_prog_compiler_no_builtin_flag_CXX=
+ fi
+
+ if test "$GXX" = yes; then
+ # Set up default GNU C++ configuration
+
+
+
+# Check whether --with-gnu-ld was given.
+if test "${with_gnu_ld+set}" = set; then
+ withval=$with_gnu_ld; test "$withval" = no || with_gnu_ld=yes
+else
+ with_gnu_ld=no
+fi
+
+ac_prog=ld
+if test "$GCC" = yes; then
+ # Check if gcc -print-prog-name=ld gives a path.
+ { $as_echo "$as_me:$LINENO: checking for ld used by $CC" >&5
+$as_echo_n "checking for ld used by $CC... " >&6; }
+ case $host in
+ *-*-mingw*)
+ # gcc leaves a trailing carriage return which upsets mingw
+ ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
+ *)
+ ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
+ esac
+ case $ac_prog in
+ # Accept absolute paths.
+ [\\/]* | ?:[\\/]*)
+ re_direlt='/[^/][^/]*/\.\./'
+ # Canonicalize the pathname of ld
+ ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
+ while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
+ ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
+ done
+ test -z "$LD" && LD="$ac_prog"
+ ;;
+ "")
+ # If it fails, then pretend we aren't using GCC.
+ ac_prog=ld
+ ;;
+ *)
+ # If it is relative, then search for the first ld in PATH.
+ with_gnu_ld=unknown
+ ;;
+ esac
+elif test "$with_gnu_ld" = yes; then
+ { $as_echo "$as_me:$LINENO: checking for GNU ld" >&5
+$as_echo_n "checking for GNU ld... " >&6; }
+else
+ { $as_echo "$as_me:$LINENO: checking for non-GNU ld" >&5
+$as_echo_n "checking for non-GNU ld... " >&6; }
+fi
+if test "${lt_cv_path_LD+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -z "$LD"; then
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ for ac_dir in $PATH; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ if test -f "$ac_dir/$ac_prog" || test -f "$ac_dir/$ac_prog$ac_exeext"; then
+ lt_cv_path_LD="$ac_dir/$ac_prog"
+ # Check to see if the program is GNU ld. I'd rather use --version,
+ # but apparently some variants of GNU ld only accept -v.
+ # Break only if it was the GNU/non-GNU ld that we prefer.
+ case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
+ *GNU* | *'with BFD'*)
+ test "$with_gnu_ld" != no && break
+ ;;
+ *)
+ test "$with_gnu_ld" != yes && break
+ ;;
+ esac
+ fi
+ done
+ IFS="$lt_save_ifs"
+else
+ lt_cv_path_LD="$LD" # Let the user override the test with a path.
+fi
+fi
+
+LD="$lt_cv_path_LD"
+if test -n "$LD"; then
+ { $as_echo "$as_me:$LINENO: result: $LD" >&5
+$as_echo "$LD" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+test -z "$LD" && { { $as_echo "$as_me:$LINENO: error: no acceptable ld found in \$PATH" >&5
+$as_echo "$as_me: error: no acceptable ld found in \$PATH" >&2;}
+ { (exit 1); exit 1; }; }
+{ $as_echo "$as_me:$LINENO: checking if the linker ($LD) is GNU ld" >&5
+$as_echo_n "checking if the linker ($LD) is GNU ld... " >&6; }
+if test "${lt_cv_prog_gnu_ld+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ # I'd rather use --version here, but apparently some GNU lds only accept -v.
+case `$LD -v 2>&1 </dev/null` in
+*GNU* | *'with BFD'*)
+ lt_cv_prog_gnu_ld=yes
+ ;;
+*)
+ lt_cv_prog_gnu_ld=no
+ ;;
+esac
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_gnu_ld" >&5
+$as_echo "$lt_cv_prog_gnu_ld" >&6; }
+with_gnu_ld=$lt_cv_prog_gnu_ld
+
+
+
+
+
+
+
+ # Check if GNU C++ uses GNU ld as the underlying linker, since the
+ # archiving commands below assume that GNU ld is being used.
+ if test "$with_gnu_ld" = yes; then
+ archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
+ export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
+
+ # If archive_cmds runs LD, not CC, wlarc should be empty
+ # XXX I think wlarc can be eliminated in ltcf-cxx, but I need to
+ # investigate it a little bit more. (MM)
+ wlarc='${wl}'
+
+ # ancient GNU ld didn't support --whole-archive et. al.
+ if eval "`$CC -print-prog-name=ld` --help 2>&1" |
+ $GREP 'no-whole-archive' > /dev/null; then
+ whole_archive_flag_spec_CXX="$wlarc"'--whole-archive$convenience '"$wlarc"'--no-whole-archive'
+ else
+ whole_archive_flag_spec_CXX=
+ fi
+ else
+ with_gnu_ld=no
+ wlarc=
+
+ # A generic and very simple default shared library creation
+ # command for GNU C++ for the case where it uses the native
+ # linker, instead of GNU ld. If possible, this setting should
+ # overridden to take advantage of the native linker features on
+ # the platform it is being used on.
+ archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $lib'
+ fi
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+
+ else
+ GXX=no
+ with_gnu_ld=no
+ wlarc=
+ fi
+
+ # PORTME: fill in a description of your system's C++ link characteristics
+ { $as_echo "$as_me:$LINENO: checking whether the $compiler linker ($LD) supports shared libraries" >&5
+$as_echo_n "checking whether the $compiler linker ($LD) supports shared libraries... " >&6; }
+ ld_shlibs_CXX=yes
+ case $host_os in
+ aix3*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ aix[4-9]*)
+ if test "$host_cpu" = ia64; then
+ # On IA64, the linker does run time linking by default, so we don't
+ # have to do anything special.
+ aix_use_runtimelinking=no
+ exp_sym_flag='-Bexport'
+ no_entry_flag=""
+ else
+ aix_use_runtimelinking=no
+
+ # Test if we are trying to use run time linking or normal
+ # AIX style linking. If -brtl is somewhere in LDFLAGS, we
+ # need to do runtime linking.
+ case $host_os in aix4.[23]|aix4.[23].*|aix[5-9]*)
+ for ld_flag in $LDFLAGS; do
+ case $ld_flag in
+ *-brtl*)
+ aix_use_runtimelinking=yes
+ break
+ ;;
+ esac
+ done
+ ;;
+ esac
+
+ exp_sym_flag='-bexport'
+ no_entry_flag='-bnoentry'
+ fi
+
+ # When large executables or shared objects are built, AIX ld can
+ # have problems creating the table of contents. If linking a library
+ # or program results in "error TOC overflow" add -mminimal-toc to
+ # CXXFLAGS/CFLAGS for g++/gcc. In the cases where that is not
+ # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS.
+
+ archive_cmds_CXX=''
+ hardcode_direct_CXX=yes
+ hardcode_direct_absolute_CXX=yes
+ hardcode_libdir_separator_CXX=':'
+ link_all_deplibs_CXX=yes
+ file_list_spec_CXX='${wl}-f,'
+
+ if test "$GXX" = yes; then
+ case $host_os in aix4.[012]|aix4.[012].*)
+ # We only want to do this on AIX 4.2 and lower, the check
+ # below for broken collect2 doesn't work under 4.3+
+ collect2name=`${CC} -print-prog-name=collect2`
+ if test -f "$collect2name" &&
+ strings "$collect2name" | $GREP resolve_lib_name >/dev/null
+ then
+ # We have reworked collect2
+ :
+ else
+ # We have old collect2
+ hardcode_direct_CXX=unsupported
+ # It fails to find uninstalled libraries when the uninstalled
+ # path is not listed in the libpath. Setting hardcode_minus_L
+ # to unsupported forces relinking
+ hardcode_minus_L_CXX=yes
+ hardcode_libdir_flag_spec_CXX='-L$libdir'
+ hardcode_libdir_separator_CXX=
+ fi
+ esac
+ shared_flag='-shared'
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag="$shared_flag "'${wl}-G'
+ fi
+ else
+ # not using gcc
+ if test "$host_cpu" = ia64; then
+ # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release
+ # chokes on -Wl,-G. The following line is correct:
+ shared_flag='-G'
+ else
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag='${wl}-G'
+ else
+ shared_flag='${wl}-bM:SRE'
+ fi
+ fi
+ fi
+
+ export_dynamic_flag_spec_CXX='${wl}-bexpall'
+ # It seems that -bexpall does not export symbols beginning with
+ # underscore (_), so it is better to generate a list of symbols to
+ # export.
+ always_export_symbols_CXX=yes
+ if test "$aix_use_runtimelinking" = yes; then
+ # Warning - without using the other runtime loading flags (-brtl),
+ # -berok will link without error, but may produce a broken library.
+ allow_undefined_flag_CXX='-berok'
+ # Determine the default libpath from the value encoded in an empty
+ # executable.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+
+lt_aix_libpath_sed='
+ /Import File Strings/,/^$/ {
+ /^0/ {
+ s/^0 *\(.*\)$/\1/
+ p
+ }
+ }'
+aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+# Check for a 64-bit object if we didn't find anything.
+if test -z "$aix_libpath"; then
+ aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+fi
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi
+
+ hardcode_libdir_flag_spec_CXX='${wl}-blibpath:$libdir:'"$aix_libpath"
+
+ archive_expsym_cmds_CXX='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
+ else
+ if test "$host_cpu" = ia64; then
+ hardcode_libdir_flag_spec_CXX='${wl}-R $libdir:/usr/lib:/lib'
+ allow_undefined_flag_CXX="-z nodefs"
+ archive_expsym_cmds_CXX="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols"
+ else
+ # Determine the default libpath from the value encoded in an
+ # empty executable.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+
+lt_aix_libpath_sed='
+ /Import File Strings/,/^$/ {
+ /^0/ {
+ s/^0 *\(.*\)$/\1/
+ p
+ }
+ }'
+aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+# Check for a 64-bit object if we didn't find anything.
+if test -z "$aix_libpath"; then
+ aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+fi
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi
+
+ hardcode_libdir_flag_spec_CXX='${wl}-blibpath:$libdir:'"$aix_libpath"
+ # Warning - without using the other run time loading flags,
+ # -berok will link without error, but may produce a broken library.
+ no_undefined_flag_CXX=' ${wl}-bernotok'
+ allow_undefined_flag_CXX=' ${wl}-berok'
+ # Exported symbols can be pulled into shared objects from archives
+ whole_archive_flag_spec_CXX='$convenience'
+ archive_cmds_need_lc_CXX=yes
+ # This is similar to how AIX traditionally builds its shared
+ # libraries.
+ archive_expsym_cmds_CXX="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname'
+ fi
+ fi
+ ;;
+
+ beos*)
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ allow_undefined_flag_CXX=unsupported
+ # Joseph Beckenbach <jrb3 at best.com> says some releases of gcc
+ # support --undefined. This deserves some investigation. FIXME
+ archive_cmds_CXX='$CC -nostart $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ else
+ ld_shlibs_CXX=no
+ fi
+ ;;
+
+ chorus*)
+ case $cc_basename in
+ *)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ esac
+ ;;
+
+ cygwin* | mingw* | pw32* | cegcc*)
+ # _LT_TAGVAR(hardcode_libdir_flag_spec, CXX) is actually meaningless,
+ # as there is no search path for DLLs.
+ hardcode_libdir_flag_spec_CXX='-L$libdir'
+ allow_undefined_flag_CXX=unsupported
+ always_export_symbols_CXX=no
+ enable_shared_with_static_runtimes_CXX=yes
+
+ if $LD --help 2>&1 | $GREP 'auto-import' > /dev/null; then
+ archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ # If the export-symbols file already is a .def file (1st line
+ # is EXPORTS), use it as is; otherwise, prepend...
+ archive_expsym_cmds_CXX='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
+ cp $export_symbols $output_objdir/$soname.def;
+ else
+ echo EXPORTS > $output_objdir/$soname.def;
+ cat $export_symbols >> $output_objdir/$soname.def;
+ fi~
+ $CC -shared -nostdlib $output_objdir/$soname.def $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ else
+ ld_shlibs_CXX=no
+ fi
+ ;;
+ darwin* | rhapsody*)
+
+
+ archive_cmds_need_lc_CXX=no
+ hardcode_direct_CXX=no
+ hardcode_automatic_CXX=yes
+ hardcode_shlibpath_var_CXX=unsupported
+ whole_archive_flag_spec_CXX=''
+ link_all_deplibs_CXX=yes
+ allow_undefined_flag_CXX="$_lt_dar_allow_undefined"
+ case $cc_basename in
+ ifort*) _lt_dar_can_shared=yes ;;
+ *) _lt_dar_can_shared=$GCC ;;
+ esac
+ if test "$_lt_dar_can_shared" = "yes"; then
+ output_verbose_link_cmd=echo
+ archive_cmds_CXX="\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring $_lt_dar_single_mod${_lt_dsymutil}"
+ module_cmds_CXX="\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dsymutil}"
+ archive_expsym_cmds_CXX="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring ${_lt_dar_single_mod}${_lt_dar_export_syms}${_lt_dsymutil}"
+ module_expsym_cmds_CXX="sed -e 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dar_export_syms}${_lt_dsymutil}"
+ if test "$lt_cv_apple_cc_single_mod" != "yes"; then
+ archive_cmds_CXX="\$CC -r -keep_private_externs -nostdlib -o \${lib}-master.o \$libobjs~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \${lib}-master.o \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring${_lt_dsymutil}"
+ archive_expsym_cmds_CXX="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -r -keep_private_externs -nostdlib -o \${lib}-master.o \$libobjs~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \${lib}-master.o \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring${_lt_dar_export_syms}${_lt_dsymutil}"
+ fi
+
+ else
+ ld_shlibs_CXX=no
+ fi
+
+ ;;
+
+ dgux*)
+ case $cc_basename in
+ ec++*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ ghcx*)
+ # Green Hills C++ Compiler
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ esac
+ ;;
+
+ freebsd[12]*)
+ # C++ shared libraries reported to be fairly broken before
+ # switch to ELF
+ ld_shlibs_CXX=no
+ ;;
+
+ freebsd-elf*)
+ archive_cmds_need_lc_CXX=no
+ ;;
+
+ freebsd* | dragonfly*)
+ # FreeBSD 3 and later use GNU C++ and GNU ld with standard ELF
+ # conventions
+ ld_shlibs_CXX=yes
+ ;;
+
+ gnu*)
+ ;;
+
+ hpux9*)
+ hardcode_libdir_flag_spec_CXX='${wl}+b ${wl}$libdir'
+ hardcode_libdir_separator_CXX=:
+ export_dynamic_flag_spec_CXX='${wl}-E'
+ hardcode_direct_CXX=yes
+ hardcode_minus_L_CXX=yes # Not in the search PATH,
+ # but as the default
+ # location of the library.
+
+ case $cc_basename in
+ CC*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ aCC*)
+ archive_cmds_CXX='$RM $output_objdir/$soname~$CC -b ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $EGREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ *)
+ if test "$GXX" = yes; then
+ archive_cmds_CXX='$RM $output_objdir/$soname~$CC -shared -nostdlib -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ else
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ fi
+ ;;
+ esac
+ ;;
+
+ hpux10*|hpux11*)
+ if test $with_gnu_ld = no; then
+ hardcode_libdir_flag_spec_CXX='${wl}+b ${wl}$libdir'
+ hardcode_libdir_separator_CXX=:
+
+ case $host_cpu in
+ hppa*64*|ia64*)
+ ;;
+ *)
+ export_dynamic_flag_spec_CXX='${wl}-E'
+ ;;
+ esac
+ fi
+ case $host_cpu in
+ hppa*64*|ia64*)
+ hardcode_direct_CXX=no
+ hardcode_shlibpath_var_CXX=no
+ ;;
+ *)
+ hardcode_direct_CXX=yes
+ hardcode_direct_absolute_CXX=yes
+ hardcode_minus_L_CXX=yes # Not in the search PATH,
+ # but as the default
+ # location of the library.
+ ;;
+ esac
+
+ case $cc_basename in
+ CC*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ aCC*)
+ case $host_cpu in
+ hppa*64*)
+ archive_cmds_CXX='$CC -b ${wl}+h ${wl}$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ ia64*)
+ archive_cmds_CXX='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ *)
+ archive_cmds_CXX='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ esac
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $GREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ *)
+ if test "$GXX" = yes; then
+ if test $with_gnu_ld = no; then
+ case $host_cpu in
+ hppa*64*)
+ archive_cmds_CXX='$CC -shared -nostdlib -fPIC ${wl}+h ${wl}$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ ia64*)
+ archive_cmds_CXX='$CC -shared -nostdlib -fPIC ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ *)
+ archive_cmds_CXX='$CC -shared -nostdlib -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ esac
+ fi
+ else
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ fi
+ ;;
+ esac
+ ;;
+
+ interix[3-9]*)
+ hardcode_direct_CXX=no
+ hardcode_shlibpath_var_CXX=no
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath,$libdir'
+ export_dynamic_flag_spec_CXX='${wl}-E'
+ # Hack: On Interix 3.x, we cannot compile PIC because of a broken gcc.
+ # Instead, shared libraries are loaded at an image base (0x10000000 by
+ # default) and relocated if they conflict, which is a slow very memory
+ # consuming and fragmenting process. To avoid this, we pick a random,
+ # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link
+ # time. Moving up from 0x10000000 also allows more sbrk(2) space.
+ archive_cmds_CXX='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ archive_expsym_cmds_CXX='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ ;;
+ irix5* | irix6*)
+ case $cc_basename in
+ CC*)
+ # SGI C++
+ archive_cmds_CXX='$CC -shared -all -multigot $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+
+ # Archives containing C++ object files must be created using
+ # "CC -ar", where "CC" is the IRIX C++ compiler. This is
+ # necessary to make sure instantiated templates are included
+ # in the archive.
+ old_archive_cmds_CXX='$CC -ar -WR,-u -o $oldlib $oldobjs'
+ ;;
+ *)
+ if test "$GXX" = yes; then
+ if test "$with_gnu_ld" = no; then
+ archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ else
+ archive_cmds_CXX='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` -o $lib'
+ fi
+ fi
+ link_all_deplibs_CXX=yes
+ ;;
+ esac
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
+ hardcode_libdir_separator_CXX=:
+ inherit_rpath_CXX=yes
+ ;;
+
+ linux* | k*bsd*-gnu)
+ case $cc_basename in
+ KCC*)
+ # Kuck and Associates, Inc. (KAI) C++ Compiler
+
+ # KCC will only create a shared library if the output file
+ # ends with ".so" (or ".sl" for HP-UX), so rename the library
+ # to its proper name (with version) after linking.
+ archive_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
+ archive_expsym_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib'
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath,$libdir'
+ export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
+
+ # Archives containing C++ object files must be created using
+ # "CC -Bstatic", where "CC" is the KAI C++ compiler.
+ old_archive_cmds_CXX='$CC -Bstatic -o $oldlib $oldobjs'
+ ;;
+ icpc* | ecpc* )
+ # Intel C++
+ with_gnu_ld=yes
+ # version 8.0 and above of icpc choke on multiply defined symbols
+ # if we add $predep_objects and $postdep_objects, however 7.1 and
+ # earlier do not add the objects themselves.
+ case `$CC -V 2>&1` in
+ *"Version 7."*)
+ archive_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ ;;
+ *) # Version 8.0 or newer
+ tmp_idyn=
+ case $host_cpu in
+ ia64*) tmp_idyn=' -i_dynamic';;
+ esac
+ archive_cmds_CXX='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds_CXX='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ ;;
+ esac
+ archive_cmds_need_lc_CXX=no
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath,$libdir'
+ export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
+ whole_archive_flag_spec_CXX='${wl}--whole-archive$convenience ${wl}--no-whole-archive'
+ ;;
+ pgCC* | pgcpp*)
+ # Portland Group C++ compiler
+ case `$CC -V` in
+ *pgCC\ [1-5]* | *pgcpp\ [1-5]*)
+ prelink_cmds_CXX='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~
+ compile_command="$compile_command `find $tpldir -name \*.o | $NL2SP`"'
+ old_archive_cmds_CXX='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~
+ $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | $NL2SP`~
+ $RANLIB $oldlib'
+ archive_cmds_CXX='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
+ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
+ archive_expsym_cmds_CXX='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
+ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
+ ;;
+ *) # Version 6 will use weak symbols
+ archive_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
+ archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
+ ;;
+ esac
+
+ hardcode_libdir_flag_spec_CXX='${wl}--rpath ${wl}$libdir'
+ export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
+ whole_archive_flag_spec_CXX='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ ;;
+ cxx*)
+ # Compaq C++
+ archive_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ archive_expsym_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib ${wl}-retain-symbols-file $wl$export_symbols'
+
+ runpath_var=LD_RUN_PATH
+ hardcode_libdir_flag_spec_CXX='-rpath $libdir'
+ hardcode_libdir_separator_CXX=:
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ xl*)
+ # IBM XL 8.0 on PPC, with GNU ld
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
+ export_dynamic_flag_spec_CXX='${wl}--export-dynamic'
+ archive_cmds_CXX='$CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ if test "x$supports_anon_versioning" = xyes; then
+ archive_expsym_cmds_CXX='echo "{ global:" > $output_objdir/$libname.ver~
+ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~
+ echo "local: *; };" >> $output_objdir/$libname.ver~
+ $CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib'
+ fi
+ ;;
+ *)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C++ 5.9
+ no_undefined_flag_CXX=' -zdefs'
+ archive_cmds_CXX='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ archive_expsym_cmds_CXX='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file ${wl}$export_symbols'
+ hardcode_libdir_flag_spec_CXX='-R$libdir'
+ whole_archive_flag_spec_CXX='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ compiler_needs_object_CXX=yes
+
+ # Not sure whether something based on
+ # $CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1
+ # would be better.
+ output_verbose_link_cmd='echo'
+
+ # Archives containing C++ object files must be created using
+ # "CC -xar", where "CC" is the Sun C++ compiler. This is
+ # necessary to make sure instantiated templates are included
+ # in the archive.
+ old_archive_cmds_CXX='$CC -xar -o $oldlib $oldobjs'
+ ;;
+ esac
+ ;;
+ esac
+ ;;
+
+ lynxos*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+
+ m88k*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+
+ mvs*)
+ case $cc_basename in
+ cxx*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ esac
+ ;;
+
+ netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ archive_cmds_CXX='$LD -Bshareable -o $lib $predep_objects $libobjs $deplibs $postdep_objects $linker_flags'
+ wlarc=
+ hardcode_libdir_flag_spec_CXX='-R$libdir'
+ hardcode_direct_CXX=yes
+ hardcode_shlibpath_var_CXX=no
+ fi
+ # Workaround some broken pre-1.5 toolchains
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP conftest.$objext | $SED -e "s:-lgcc -lc -lgcc::"'
+ ;;
+
+ *nto* | *qnx*)
+ ld_shlibs_CXX=yes
+ ;;
+
+ openbsd2*)
+ # C++ shared libraries are fairly broken
+ ld_shlibs_CXX=no
+ ;;
+
+ openbsd*)
+ if test -f /usr/libexec/ld.so; then
+ hardcode_direct_CXX=yes
+ hardcode_shlibpath_var_CXX=no
+ hardcode_direct_absolute_CXX=yes
+ archive_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $lib'
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath,$libdir'
+ if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ archive_expsym_cmds_CXX='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file,$export_symbols -o $lib'
+ export_dynamic_flag_spec_CXX='${wl}-E'
+ whole_archive_flag_spec_CXX="$wlarc"'--whole-archive$convenience '"$wlarc"'--no-whole-archive'
+ fi
+ output_verbose_link_cmd=echo
+ else
+ ld_shlibs_CXX=no
+ fi
+ ;;
+
+ osf3* | osf4* | osf5*)
+ case $cc_basename in
+ KCC*)
+ # Kuck and Associates, Inc. (KAI) C++ Compiler
+
+ # KCC will only create a shared library if the output file
+ # ends with ".so" (or ".sl" for HP-UX), so rename the library
+ # to its proper name (with version) after linking.
+ archive_cmds_CXX='tempext=`echo $shared_ext | $SED -e '\''s/\([^()0-9A-Za-z{}]\)/\\\\\1/g'\''`; templib=`echo "$lib" | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
+
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath,$libdir'
+ hardcode_libdir_separator_CXX=:
+
+ # Archives containing C++ object files must be created using
+ # the KAI C++ compiler.
+ case $host in
+ osf3*) old_archive_cmds_CXX='$CC -Bstatic -o $oldlib $oldobjs' ;;
+ *) old_archive_cmds_CXX='$CC -o $oldlib $oldobjs' ;;
+ esac
+ ;;
+ RCC*)
+ # Rational C++ 2.4.1
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ cxx*)
+ case $host in
+ osf3*)
+ allow_undefined_flag_CXX=' ${wl}-expect_unresolved ${wl}\*'
+ archive_cmds_CXX='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && $ECHO "X${wl}-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
+ ;;
+ *)
+ allow_undefined_flag_CXX=' -expect_unresolved \*'
+ archive_cmds_CXX='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ archive_expsym_cmds_CXX='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~
+ echo "-hidden">> $lib.exp~
+ $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~
+ $RM $lib.exp'
+ hardcode_libdir_flag_spec_CXX='-rpath $libdir'
+ ;;
+ esac
+
+ hardcode_libdir_separator_CXX=:
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld.*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ *)
+ if test "$GXX" = yes && test "$with_gnu_ld" = no; then
+ allow_undefined_flag_CXX=' ${wl}-expect_unresolved ${wl}\*'
+ case $host in
+ osf3*)
+ archive_cmds_CXX='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ ;;
+ *)
+ archive_cmds_CXX='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ ;;
+ esac
+
+ hardcode_libdir_flag_spec_CXX='${wl}-rpath ${wl}$libdir'
+ hardcode_libdir_separator_CXX=:
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+
+ else
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ fi
+ ;;
+ esac
+ ;;
+
+ psos*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+
+ sunos4*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.x
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ lcc*)
+ # Lucid
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ esac
+ ;;
+
+ solaris*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.2, 5.x and Centerline C++
+ archive_cmds_need_lc_CXX=yes
+ no_undefined_flag_CXX=' -zdefs'
+ archive_cmds_CXX='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ archive_expsym_cmds_CXX='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -G${allow_undefined_flag} ${wl}-M ${wl}$lib.exp -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~$RM $lib.exp'
+
+ hardcode_libdir_flag_spec_CXX='-R$libdir'
+ hardcode_shlibpath_var_CXX=no
+ case $host_os in
+ solaris2.[0-5] | solaris2.[0-5].*) ;;
+ *)
+ # The compiler driver will combine and reorder linker options,
+ # but understands `-z linker_flag'.
+ # Supported since Solaris 2.6 (maybe 2.5.1?)
+ whole_archive_flag_spec_CXX='-z allextract$convenience -z defaultextract'
+ ;;
+ esac
+ link_all_deplibs_CXX=yes
+
+ output_verbose_link_cmd='echo'
+
+ # Archives containing C++ object files must be created using
+ # "CC -xar", where "CC" is the Sun C++ compiler. This is
+ # necessary to make sure instantiated templates are included
+ # in the archive.
+ old_archive_cmds_CXX='$CC -xar -o $oldlib $oldobjs'
+ ;;
+ gcx*)
+ # Green Hills C++ Compiler
+ archive_cmds_CXX='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-h $wl$soname -o $lib'
+
+ # The C++ compiler must be used to create the archive.
+ old_archive_cmds_CXX='$CC $LDFLAGS -archive -o $oldlib $oldobjs'
+ ;;
+ *)
+ # GNU C++ compiler with Solaris linker
+ if test "$GXX" = yes && test "$with_gnu_ld" = no; then
+ no_undefined_flag_CXX=' ${wl}-z ${wl}defs'
+ if $CC --version | $GREP -v '^2\.7' > /dev/null; then
+ archive_cmds_CXX='$CC -shared -nostdlib $LDFLAGS $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-h $wl$soname -o $lib'
+ archive_expsym_cmds_CXX='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -shared -nostdlib ${wl}-M $wl$lib.exp -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~$RM $lib.exp'
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+ else
+ # g++ 2.7 appears to require `-G' NOT `-shared' on this
+ # platform.
+ archive_cmds_CXX='$CC -G -nostdlib $LDFLAGS $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-h $wl$soname -o $lib'
+ archive_expsym_cmds_CXX='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -G -nostdlib ${wl}-M $wl$lib.exp -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~$RM $lib.exp'
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -G $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+ fi
+
+ hardcode_libdir_flag_spec_CXX='${wl}-R $wl$libdir'
+ case $host_os in
+ solaris2.[0-5] | solaris2.[0-5].*) ;;
+ *)
+ whole_archive_flag_spec_CXX='${wl}-z ${wl}allextract$convenience ${wl}-z ${wl}defaultextract'
+ ;;
+ esac
+ fi
+ ;;
+ esac
+ ;;
+
+ sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[01].[10]* | unixware7* | sco3.2v5.0.[024]*)
+ no_undefined_flag_CXX='${wl}-z,text'
+ archive_cmds_need_lc_CXX=no
+ hardcode_shlibpath_var_CXX=no
+ runpath_var='LD_RUN_PATH'
+
+ case $cc_basename in
+ CC*)
+ archive_cmds_CXX='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds_CXX='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ archive_cmds_CXX='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds_CXX='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ ;;
+
+ sysv5* | sco3.2v5* | sco5v6*)
+ # Note: We can NOT use -z defs as we might desire, because we do not
+ # link with -lc, and that would cause any symbols used from libc to
+ # always be unresolved, which means just about no library would
+ # ever link correctly. If we're not using GNU ld we use -z text
+ # though, which does catch some bad symbols but isn't as heavy-handed
+ # as -z defs.
+ no_undefined_flag_CXX='${wl}-z,text'
+ allow_undefined_flag_CXX='${wl}-z,nodefs'
+ archive_cmds_need_lc_CXX=no
+ hardcode_shlibpath_var_CXX=no
+ hardcode_libdir_flag_spec_CXX='${wl}-R,$libdir'
+ hardcode_libdir_separator_CXX=':'
+ link_all_deplibs_CXX=yes
+ export_dynamic_flag_spec_CXX='${wl}-Bexport'
+ runpath_var='LD_RUN_PATH'
+
+ case $cc_basename in
+ CC*)
+ archive_cmds_CXX='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds_CXX='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ archive_cmds_CXX='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ archive_expsym_cmds_CXX='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ ;;
+
+ tandem*)
+ case $cc_basename in
+ NCC*)
+ # NonStop-UX NCC 3.20
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ esac
+ ;;
+
+ vxworks*)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+
+ *)
+ # FIXME: insert proper C++ library support
+ ld_shlibs_CXX=no
+ ;;
+ esac
+
+ { $as_echo "$as_me:$LINENO: result: $ld_shlibs_CXX" >&5
+$as_echo "$ld_shlibs_CXX" >&6; }
+ test "$ld_shlibs_CXX" = no && can_build_shared=no
+
+ GCC_CXX="$GXX"
+ LD_CXX="$LD"
+
+ ## CAVEAT EMPTOR:
+ ## There is no encapsulation within the following macros, do not change
+ ## the running order or otherwise move them around unless you know exactly
+ ## what you are doing...
+ # Dependencies to place before and after the object being linked:
+predep_objects_CXX=
+postdep_objects_CXX=
+predeps_CXX=
+postdeps_CXX=
+compiler_lib_search_path_CXX=
+
+cat > conftest.$ac_ext <<_LT_EOF
+class Foo
+{
+public:
+ Foo (void) { a = 0; }
+private:
+ int a;
+};
+_LT_EOF
+
+if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ # Parse the compiler output and extract the necessary
+ # objects, libraries and library flags.
+
+ # Sentinel used to keep track of whether or not we are before
+ # the conftest object file.
+ pre_test_object_deps_done=no
+
+ for p in `eval "$output_verbose_link_cmd"`; do
+ case $p in
+
+ -L* | -R* | -l*)
+ # Some compilers place space between "-{L,R}" and the path.
+ # Remove the space.
+ if test $p = "-L" ||
+ test $p = "-R"; then
+ prev=$p
+ continue
+ else
+ prev=
+ fi
+
+ if test "$pre_test_object_deps_done" = no; then
+ case $p in
+ -L* | -R*)
+ # Internal compiler library paths should come after those
+ # provided the user. The postdeps already come after the
+ # user supplied libs so there is no need to process them.
+ if test -z "$compiler_lib_search_path_CXX"; then
+ compiler_lib_search_path_CXX="${prev}${p}"
+ else
+ compiler_lib_search_path_CXX="${compiler_lib_search_path_CXX} ${prev}${p}"
+ fi
+ ;;
+ # The "-l" case would never come before the object being
+ # linked, so don't bother handling this case.
+ esac
+ else
+ if test -z "$postdeps_CXX"; then
+ postdeps_CXX="${prev}${p}"
+ else
+ postdeps_CXX="${postdeps_CXX} ${prev}${p}"
+ fi
+ fi
+ ;;
+
+ *.$objext)
+ # This assumes that the test object file only shows up
+ # once in the compiler output.
+ if test "$p" = "conftest.$objext"; then
+ pre_test_object_deps_done=yes
+ continue
+ fi
+
+ if test "$pre_test_object_deps_done" = no; then
+ if test -z "$predep_objects_CXX"; then
+ predep_objects_CXX="$p"
+ else
+ predep_objects_CXX="$predep_objects_CXX $p"
+ fi
+ else
+ if test -z "$postdep_objects_CXX"; then
+ postdep_objects_CXX="$p"
+ else
+ postdep_objects_CXX="$postdep_objects_CXX $p"
+ fi
+ fi
+ ;;
+
+ *) ;; # Ignore the rest.
+
+ esac
+ done
+
+ # Clean up.
+ rm -f a.out a.exe
+else
+ echo "libtool.m4: error: problem compiling CXX test program"
+fi
+
+$RM -f confest.$objext
+
+# PORTME: override above test on systems where it is broken
+case $host_os in
+interix[3-9]*)
+ # Interix 3.5 installs completely hosed .la files for C++, so rather than
+ # hack all around it, let's just trust "g++" to DTRT.
+ predep_objects_CXX=
+ postdep_objects_CXX=
+ postdeps_CXX=
+ ;;
+
+linux*)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C++ 5.9
+
+ # The more standards-conforming stlport4 library is
+ # incompatible with the Cstd library. Avoid specifying
+ # it if it's in CXXFLAGS. Ignore libCrun as
+ # -library=stlport4 depends on it.
+ case " $CXX $CXXFLAGS " in
+ *" -library=stlport4 "*)
+ solaris_use_stlport4=yes
+ ;;
+ esac
+
+ if test "$solaris_use_stlport4" != yes; then
+ postdeps_CXX='-library=Cstd -library=Crun'
+ fi
+ ;;
+ esac
+ ;;
+
+solaris*)
+ case $cc_basename in
+ CC*)
+ # The more standards-conforming stlport4 library is
+ # incompatible with the Cstd library. Avoid specifying
+ # it if it's in CXXFLAGS. Ignore libCrun as
+ # -library=stlport4 depends on it.
+ case " $CXX $CXXFLAGS " in
+ *" -library=stlport4 "*)
+ solaris_use_stlport4=yes
+ ;;
+ esac
+
+ # Adding this requires a known-good setup of shared libraries for
+ # Sun compiler versions before 5.6, else PIC objects from an old
+ # archive will be linked into the output, leading to subtle bugs.
+ if test "$solaris_use_stlport4" != yes; then
+ postdeps_CXX='-library=Cstd -library=Crun'
+ fi
+ ;;
+ esac
+ ;;
+esac
+
+
+case " $postdeps_CXX " in
+*" -lc "*) archive_cmds_need_lc_CXX=no ;;
+esac
+ compiler_lib_search_dirs_CXX=
+if test -n "${compiler_lib_search_path_CXX}"; then
+ compiler_lib_search_dirs_CXX=`echo " ${compiler_lib_search_path_CXX}" | ${SED} -e 's! -L! !g' -e 's!^ !!'`
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ lt_prog_compiler_wl_CXX=
+lt_prog_compiler_pic_CXX=
+lt_prog_compiler_static_CXX=
+
+{ $as_echo "$as_me:$LINENO: checking for $compiler option to produce PIC" >&5
+$as_echo_n "checking for $compiler option to produce PIC... " >&6; }
+
+ # C++ specific cases for pic, static, wl, etc.
+ if test "$GXX" = yes; then
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_static_CXX='-static'
+
+ case $host_os in
+ aix*)
+ # All AIX code is PIC.
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ lt_prog_compiler_static_CXX='-Bstatic'
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ lt_prog_compiler_pic_CXX='-fPIC'
+ ;;
+ m68k)
+ # FIXME: we need at least 68020 code to build shared libraries, but
+ # adding the `-m68020' flag to GCC prevents building anything better,
+ # like `-m68040'.
+ lt_prog_compiler_pic_CXX='-m68020 -resident32 -malways-restore-a4'
+ ;;
+ esac
+ ;;
+
+ beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*)
+ # PIC is the default for these OSes.
+ ;;
+ mingw* | cygwin* | os2* | pw32* | cegcc*)
+ # This hack is so that the source file can tell whether it is being
+ # built for inclusion in a dll (and should export symbols for example).
+ # Although the cygwin gcc ignores -fPIC, still need this for old-style
+ # (--disable-auto-import) libraries
+ lt_prog_compiler_pic_CXX='-DDLL_EXPORT'
+ ;;
+ darwin* | rhapsody*)
+ # PIC is the default on this platform
+ # Common symbols not allowed in MH_DYLIB files
+ lt_prog_compiler_pic_CXX='-fno-common'
+ ;;
+ *djgpp*)
+ # DJGPP does not support shared libraries at all
+ lt_prog_compiler_pic_CXX=
+ ;;
+ interix[3-9]*)
+ # Interix 3.x gcc -fpic/-fPIC options generate broken code.
+ # Instead, we relocate shared libraries at runtime.
+ ;;
+ sysv4*MP*)
+ if test -d /usr/nec; then
+ lt_prog_compiler_pic_CXX=-Kconform_pic
+ fi
+ ;;
+ hpux*)
+ # PIC is the default for 64-bit PA HP-UX, but not for 32-bit
+ # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag
+ # sets the default TLS model and affects inlining.
+ case $host_cpu in
+ hppa*64*)
+ ;;
+ *)
+ lt_prog_compiler_pic_CXX='-fPIC'
+ ;;
+ esac
+ ;;
+ *qnx* | *nto*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ lt_prog_compiler_pic_CXX='-fPIC -shared'
+ ;;
+ *)
+ lt_prog_compiler_pic_CXX='-fPIC'
+ ;;
+ esac
+ else
+ case $host_os in
+ aix[4-9]*)
+ # All AIX code is PIC.
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ lt_prog_compiler_static_CXX='-Bstatic'
+ else
+ lt_prog_compiler_static_CXX='-bnso -bI:/lib/syscalls.exp'
+ fi
+ ;;
+ chorus*)
+ case $cc_basename in
+ cxch68*)
+ # Green Hills C++ Compiler
+ # _LT_TAGVAR(lt_prog_compiler_static, CXX)="--no_auto_instantiation -u __main -u __premain -u _abort -r $COOL_DIR/lib/libOrb.a $MVME_DIR/lib/CC/libC.a $MVME_DIR/lib/classix/libcx.s.a"
+ ;;
+ esac
+ ;;
+ dgux*)
+ case $cc_basename in
+ ec++*)
+ lt_prog_compiler_pic_CXX='-KPIC'
+ ;;
+ ghcx*)
+ # Green Hills C++ Compiler
+ lt_prog_compiler_pic_CXX='-pic'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ freebsd* | dragonfly*)
+ # FreeBSD uses GNU C++
+ ;;
+ hpux9* | hpux10* | hpux11*)
+ case $cc_basename in
+ CC*)
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_static_CXX='${wl}-a ${wl}archive'
+ if test "$host_cpu" != ia64; then
+ lt_prog_compiler_pic_CXX='+Z'
+ fi
+ ;;
+ aCC*)
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_static_CXX='${wl}-a ${wl}archive'
+ case $host_cpu in
+ hppa*64*|ia64*)
+ # +Z the default
+ ;;
+ *)
+ lt_prog_compiler_pic_CXX='+Z'
+ ;;
+ esac
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ interix*)
+ # This is c89, which is MS Visual C++ (no shared libs)
+ # Anyone wants to do a port?
+ ;;
+ irix5* | irix6* | nonstopux*)
+ case $cc_basename in
+ CC*)
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_static_CXX='-non_shared'
+ # CC pic flag -KPIC is the default.
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ linux* | k*bsd*-gnu)
+ case $cc_basename in
+ KCC*)
+ # KAI C++ Compiler
+ lt_prog_compiler_wl_CXX='--backend -Wl,'
+ lt_prog_compiler_pic_CXX='-fPIC'
+ ;;
+ ecpc* )
+ # old Intel C++ for x86_64 which still supported -KPIC.
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_pic_CXX='-KPIC'
+ lt_prog_compiler_static_CXX='-static'
+ ;;
+ icpc* )
+ # Intel C++, used to be incompatible with GCC.
+ # ICC 10 doesn't accept -KPIC any more.
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_pic_CXX='-fPIC'
+ lt_prog_compiler_static_CXX='-static'
+ ;;
+ pgCC* | pgcpp*)
+ # Portland Group C++ compiler
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_pic_CXX='-fpic'
+ lt_prog_compiler_static_CXX='-Bstatic'
+ ;;
+ cxx*)
+ # Compaq C++
+ # Make sure the PIC flag is empty. It appears that all Alpha
+ # Linux and Compaq Tru64 Unix objects are PIC.
+ lt_prog_compiler_pic_CXX=
+ lt_prog_compiler_static_CXX='-non_shared'
+ ;;
+ xlc* | xlC*)
+ # IBM XL 8.0 on PPC
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_pic_CXX='-qpic'
+ lt_prog_compiler_static_CXX='-qstaticlink'
+ ;;
+ *)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C++ 5.9
+ lt_prog_compiler_pic_CXX='-KPIC'
+ lt_prog_compiler_static_CXX='-Bstatic'
+ lt_prog_compiler_wl_CXX='-Qoption ld '
+ ;;
+ esac
+ ;;
+ esac
+ ;;
+ lynxos*)
+ ;;
+ m88k*)
+ ;;
+ mvs*)
+ case $cc_basename in
+ cxx*)
+ lt_prog_compiler_pic_CXX='-W c,exportall'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ netbsd*)
+ ;;
+ *qnx* | *nto*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ lt_prog_compiler_pic_CXX='-fPIC -shared'
+ ;;
+ osf3* | osf4* | osf5*)
+ case $cc_basename in
+ KCC*)
+ lt_prog_compiler_wl_CXX='--backend -Wl,'
+ ;;
+ RCC*)
+ # Rational C++ 2.4.1
+ lt_prog_compiler_pic_CXX='-pic'
+ ;;
+ cxx*)
+ # Digital/Compaq C++
+ lt_prog_compiler_wl_CXX='-Wl,'
+ # Make sure the PIC flag is empty. It appears that all Alpha
+ # Linux and Compaq Tru64 Unix objects are PIC.
+ lt_prog_compiler_pic_CXX=
+ lt_prog_compiler_static_CXX='-non_shared'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ psos*)
+ ;;
+ solaris*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.2, 5.x and Centerline C++
+ lt_prog_compiler_pic_CXX='-KPIC'
+ lt_prog_compiler_static_CXX='-Bstatic'
+ lt_prog_compiler_wl_CXX='-Qoption ld '
+ ;;
+ gcx*)
+ # Green Hills C++ Compiler
+ lt_prog_compiler_pic_CXX='-PIC'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ sunos4*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.x
+ lt_prog_compiler_pic_CXX='-pic'
+ lt_prog_compiler_static_CXX='-Bstatic'
+ ;;
+ lcc*)
+ # Lucid
+ lt_prog_compiler_pic_CXX='-pic'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*)
+ case $cc_basename in
+ CC*)
+ lt_prog_compiler_wl_CXX='-Wl,'
+ lt_prog_compiler_pic_CXX='-KPIC'
+ lt_prog_compiler_static_CXX='-Bstatic'
+ ;;
+ esac
+ ;;
+ tandem*)
+ case $cc_basename in
+ NCC*)
+ # NonStop-UX NCC 3.20
+ lt_prog_compiler_pic_CXX='-KPIC'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ vxworks*)
+ ;;
+ *)
+ lt_prog_compiler_can_build_shared_CXX=no
+ ;;
+ esac
+ fi
+
+case $host_os in
+ # For platforms which do not support PIC, -DPIC is meaningless:
+ *djgpp*)
+ lt_prog_compiler_pic_CXX=
+ ;;
+ *)
+ lt_prog_compiler_pic_CXX="$lt_prog_compiler_pic_CXX -DPIC"
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: result: $lt_prog_compiler_pic_CXX" >&5
+$as_echo "$lt_prog_compiler_pic_CXX" >&6; }
+
+
+
+#
+# Check to make sure the PIC flag actually works.
+#
+if test -n "$lt_prog_compiler_pic_CXX"; then
+ { $as_echo "$as_me:$LINENO: checking if $compiler PIC flag $lt_prog_compiler_pic_CXX works" >&5
+$as_echo_n "checking if $compiler PIC flag $lt_prog_compiler_pic_CXX works... " >&6; }
+if test "${lt_cv_prog_compiler_pic_works_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_pic_works_CXX=no
+ ac_outfile=conftest.$ac_objext
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+ lt_compiler_flag="$lt_prog_compiler_pic_CXX -DPIC"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ # The option is referenced via a variable to avoid confusing sed.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:14769: $lt_compile\"" >&5)
+ (eval "$lt_compile" 2>conftest.err)
+ ac_status=$?
+ cat conftest.err >&5
+ echo "$as_me:14773: \$? = $ac_status" >&5
+ if (exit $ac_status) && test -s "$ac_outfile"; then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings other than the usual output.
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' >conftest.exp
+ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2
+ if test ! -s conftest.er2 || diff conftest.exp conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_pic_works_CXX=yes
+ fi
+ fi
+ $RM conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_pic_works_CXX" >&5
+$as_echo "$lt_cv_prog_compiler_pic_works_CXX" >&6; }
+
+if test x"$lt_cv_prog_compiler_pic_works_CXX" = xyes; then
+ case $lt_prog_compiler_pic_CXX in
+ "" | " "*) ;;
+ *) lt_prog_compiler_pic_CXX=" $lt_prog_compiler_pic_CXX" ;;
+ esac
+else
+ lt_prog_compiler_pic_CXX=
+ lt_prog_compiler_can_build_shared_CXX=no
+fi
+
+fi
+
+
+
+#
+# Check to make sure the static flag actually works.
+#
+wl=$lt_prog_compiler_wl_CXX eval lt_tmp_static_flag=\"$lt_prog_compiler_static_CXX\"
+{ $as_echo "$as_me:$LINENO: checking if $compiler static flag $lt_tmp_static_flag works" >&5
+$as_echo_n "checking if $compiler static flag $lt_tmp_static_flag works... " >&6; }
+if test "${lt_cv_prog_compiler_static_works_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_static_works_CXX=no
+ save_LDFLAGS="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $lt_tmp_static_flag"
+ echo "$lt_simple_link_test_code" > conftest.$ac_ext
+ if (eval $ac_link 2>conftest.err) && test -s conftest$ac_exeext; then
+ # The linker can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ if test -s conftest.err; then
+ # Append any errors to the config.log.
+ cat conftest.err 1>&5
+ $ECHO "X$_lt_linker_boilerplate" | $Xsed -e '/^$/d' > conftest.exp
+ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2
+ if diff conftest.exp conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_static_works_CXX=yes
+ fi
+ else
+ lt_cv_prog_compiler_static_works_CXX=yes
+ fi
+ fi
+ $RM -r conftest*
+ LDFLAGS="$save_LDFLAGS"
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_static_works_CXX" >&5
+$as_echo "$lt_cv_prog_compiler_static_works_CXX" >&6; }
+
+if test x"$lt_cv_prog_compiler_static_works_CXX" = xyes; then
+ :
+else
+ lt_prog_compiler_static_CXX=
+fi
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking if $compiler supports -c -o file.$ac_objext" >&5
+$as_echo_n "checking if $compiler supports -c -o file.$ac_objext... " >&6; }
+if test "${lt_cv_prog_compiler_c_o_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_c_o_CXX=no
+ $RM -r conftest 2>/dev/null
+ mkdir conftest
+ cd conftest
+ mkdir out
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ lt_compiler_flag="-o out/conftest2.$ac_objext"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:14868: $lt_compile\"" >&5)
+ (eval "$lt_compile" 2>out/conftest.err)
+ ac_status=$?
+ cat out/conftest.err >&5
+ echo "$as_me:14872: \$? = $ac_status" >&5
+ if (exit $ac_status) && test -s out/conftest2.$ac_objext
+ then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' > out/conftest.exp
+ $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2
+ if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_c_o_CXX=yes
+ fi
+ fi
+ chmod u+w . 2>&5
+ $RM conftest*
+ # SGI C++ compiler will create directory out/ii_files/ for
+ # template instantiation
+ test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files
+ $RM out/* && rmdir out
+ cd ..
+ $RM -r conftest
+ $RM conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_c_o_CXX" >&5
+$as_echo "$lt_cv_prog_compiler_c_o_CXX" >&6; }
+
+
+
+ { $as_echo "$as_me:$LINENO: checking if $compiler supports -c -o file.$ac_objext" >&5
+$as_echo_n "checking if $compiler supports -c -o file.$ac_objext... " >&6; }
+if test "${lt_cv_prog_compiler_c_o_CXX+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ lt_cv_prog_compiler_c_o_CXX=no
+ $RM -r conftest 2>/dev/null
+ mkdir conftest
+ cd conftest
+ mkdir out
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ lt_compiler_flag="-o out/conftest2.$ac_objext"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [^ ]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:14920: $lt_compile\"" >&5)
+ (eval "$lt_compile" 2>out/conftest.err)
+ ac_status=$?
+ cat out/conftest.err >&5
+ echo "$as_me:14924: \$? = $ac_status" >&5
+ if (exit $ac_status) && test -s out/conftest2.$ac_objext
+ then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' > out/conftest.exp
+ $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2
+ if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then
+ lt_cv_prog_compiler_c_o_CXX=yes
+ fi
+ fi
+ chmod u+w . 2>&5
+ $RM conftest*
+ # SGI C++ compiler will create directory out/ii_files/ for
+ # template instantiation
+ test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files
+ $RM out/* && rmdir out
+ cd ..
+ $RM -r conftest
+ $RM conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $lt_cv_prog_compiler_c_o_CXX" >&5
+$as_echo "$lt_cv_prog_compiler_c_o_CXX" >&6; }
+
+
+
+
+hard_links="nottested"
+if test "$lt_cv_prog_compiler_c_o_CXX" = no && test "$need_locks" != no; then
+ # do not overwrite the value of need_locks provided by the user
+ { $as_echo "$as_me:$LINENO: checking if we can lock with hard links" >&5
+$as_echo_n "checking if we can lock with hard links... " >&6; }
+ hard_links=yes
+ $RM conftest*
+ ln conftest.a conftest.b 2>/dev/null && hard_links=no
+ touch conftest.a
+ ln conftest.a conftest.b 2>&5 || hard_links=no
+ ln conftest.a conftest.b 2>/dev/null && hard_links=no
+ { $as_echo "$as_me:$LINENO: result: $hard_links" >&5
+$as_echo "$hard_links" >&6; }
+ if test "$hard_links" = no; then
+ { $as_echo "$as_me:$LINENO: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&5
+$as_echo "$as_me: WARNING: \`$CC' does not support \`-c -o', so \`make -j' may be unsafe" >&2;}
+ need_locks=warn
+ fi
+else
+ need_locks=no
+fi
+
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the $compiler linker ($LD) supports shared libraries" >&5
+$as_echo_n "checking whether the $compiler linker ($LD) supports shared libraries... " >&6; }
+
+ export_symbols_cmds_CXX='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
+ case $host_os in
+ aix[4-9]*)
+ # If we're using GNU nm, then we don't want the "-C" option.
+ # -C means demangle to AIX nm, but means don't demangle with GNU nm
+ if $NM -V 2>&1 | $GREP 'GNU' > /dev/null; then
+ export_symbols_cmds_CXX='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && (substr(\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ else
+ export_symbols_cmds_CXX='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && (substr(\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ fi
+ ;;
+ pw32*)
+ export_symbols_cmds_CXX="$ltdll_cmds"
+ ;;
+ cygwin* | mingw* | cegcc*)
+ export_symbols_cmds_CXX='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[BCDGRS][ ]/s/.*[ ]\([^ ]*\)/\1 DATA/;/^.*[ ]__nm__/s/^.*[ ]__nm__\([^ ]*\)[ ][^ ]*/\1 DATA/;/^I[ ]/d;/^[AITW][ ]/s/.* //'\'' | sort | uniq > $export_symbols'
+ ;;
+ *)
+ export_symbols_cmds_CXX='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
+ ;;
+ esac
+ exclude_expsyms_CXX='_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*'
+
+{ $as_echo "$as_me:$LINENO: result: $ld_shlibs_CXX" >&5
+$as_echo "$ld_shlibs_CXX" >&6; }
+test "$ld_shlibs_CXX" = no && can_build_shared=no
+
+with_gnu_ld_CXX=$with_gnu_ld
+
+
+
+
+
+
+#
+# Do we need to explicitly link libc?
+#
+case "x$archive_cmds_need_lc_CXX" in
+x|xyes)
+ # Assume -lc should be added
+ archive_cmds_need_lc_CXX=yes
+
+ if test "$enable_shared" = yes && test "$GCC" = yes; then
+ case $archive_cmds_CXX in
+ *'~'*)
+ # FIXME: we may have to deal with multi-command sequences.
+ ;;
+ '$CC '*)
+ # Test whether the compiler implicitly links with -lc since on some
+ # systems, -lgcc has to come before -lc. If gcc already passes -lc
+ # to ld, don't add -lc before -lgcc.
+ { $as_echo "$as_me:$LINENO: checking whether -lc should be explicitly linked in" >&5
+$as_echo_n "checking whether -lc should be explicitly linked in... " >&6; }
+ $RM conftest*
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ if { (eval echo "$as_me:$LINENO: \"$ac_compile\"") >&5
+ (eval $ac_compile) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } 2>conftest.err; then
+ soname=conftest
+ lib=conftest
+ libobjs=conftest.$ac_objext
+ deplibs=
+ wl=$lt_prog_compiler_wl_CXX
+ pic_flag=$lt_prog_compiler_pic_CXX
+ compiler_flags=-v
+ linker_flags=-v
+ verstring=
+ output_objdir=.
+ libname=conftest
+ lt_save_allow_undefined_flag=$allow_undefined_flag_CXX
+ allow_undefined_flag_CXX=
+ if { (eval echo "$as_me:$LINENO: \"$archive_cmds_CXX 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1\"") >&5
+ (eval $archive_cmds_CXX 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1) 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }
+ then
+ archive_cmds_need_lc_CXX=no
+ else
+ archive_cmds_need_lc_CXX=yes
+ fi
+ allow_undefined_flag_CXX=$lt_save_allow_undefined_flag
+ else
+ cat conftest.err 1>&5
+ fi
+ $RM conftest*
+ { $as_echo "$as_me:$LINENO: result: $archive_cmds_need_lc_CXX" >&5
+$as_echo "$archive_cmds_need_lc_CXX" >&6; }
+ ;;
+ esac
+ fi
+ ;;
+esac
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking dynamic linker characteristics" >&5
+$as_echo_n "checking dynamic linker characteristics... " >&6; }
+
+library_names_spec=
+libname_spec='lib$name'
+soname_spec=
+shrext_cmds=".so"
+postinstall_cmds=
+postuninstall_cmds=
+finish_cmds=
+finish_eval=
+shlibpath_var=
+shlibpath_overrides_runpath=unknown
+version_type=none
+dynamic_linker="$host_os ld.so"
+sys_lib_dlsearch_path_spec="/lib /usr/lib"
+need_lib_prefix=unknown
+hardcode_into_libs=no
+
+# when you set need_version to no, make sure it does not cause -set_version
+# flags to be left without arguments
+need_version=unknown
+
+case $host_os in
+aix3*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a'
+ shlibpath_var=LIBPATH
+
+ # AIX 3 has no versioning support, so we append a major version to the name.
+ soname_spec='${libname}${release}${shared_ext}$major'
+ ;;
+
+aix[4-9]*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ hardcode_into_libs=yes
+ if test "$host_cpu" = ia64; then
+ # AIX 5 supports IA64
+ library_names_spec='${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext}$versuffix $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ else
+ # With GCC up to 2.95.x, collect2 would create an import file
+ # for dependence libraries. The import file would start with
+ # the line `#! .'. This would cause the generated library to
+ # depend on `.', always an invalid library. This was fixed in
+ # development snapshots of GCC prior to 3.0.
+ case $host_os in
+ aix4 | aix4.[01] | aix4.[01].*)
+ if { echo '#if __GNUC__ > 2 || (__GNUC__ == 2 && __GNUC_MINOR__ >= 97)'
+ echo ' yes '
+ echo '#endif'; } | ${CC} -E - | $GREP yes > /dev/null; then
+ :
+ else
+ can_build_shared=no
+ fi
+ ;;
+ esac
+ # AIX (on Power*) has no versioning support, so currently we can not hardcode correct
+ # soname into executable. Probably we can add versioning support to
+ # collect2, so additional links can be useful in future.
+ if test "$aix_use_runtimelinking" = yes; then
+ # If using run time linking (on AIX 4.2 or later) use lib<name>.so
+ # instead of lib<name>.a to let people know that these are not
+ # typical AIX shared libraries.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ else
+ # We preserve .a as extension for shared libraries through AIX4.2
+ # and later when we are not doing run time linking.
+ library_names_spec='${libname}${release}.a $libname.a'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ fi
+ shlibpath_var=LIBPATH
+ fi
+ ;;
+
+amigaos*)
+ case $host_cpu in
+ powerpc)
+ # Since July 2007 AmigaOS4 officially supports .so libraries.
+ # When compiling the executable, add -use-dynld -Lsobjs: to the compileline.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ ;;
+ m68k)
+ library_names_spec='$libname.ixlibrary $libname.a'
+ # Create ${libname}_ixlibrary.a entries in /sys/libs.
+ finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`$ECHO "X$lib" | $Xsed -e '\''s%^.*/\([^/]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
+ ;;
+ esac
+ ;;
+
+beos*)
+ library_names_spec='${libname}${shared_ext}'
+ dynamic_linker="$host_os ld.so"
+ shlibpath_var=LIBRARY_PATH
+ ;;
+
+bsdi[45]*)
+ version_type=linux
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ sys_lib_search_path_spec="/shlib /usr/lib /usr/X11/lib /usr/contrib/lib /lib /usr/local/lib"
+ sys_lib_dlsearch_path_spec="/shlib /usr/lib /usr/local/lib"
+ # the default ld.so.conf also contains /usr/contrib/lib and
+ # /usr/X11R6/lib (/usr/X11 is a link to /usr/X11R6), but let us allow
+ # libtool to hard-code these into programs
+ ;;
+
+cygwin* | mingw* | pw32* | cegcc*)
+ version_type=windows
+ shrext_cmds=".dll"
+ need_version=no
+ need_lib_prefix=no
+
+ case $GCC,$host_os in
+ yes,cygwin* | yes,mingw* | yes,pw32* | yes,cegcc*)
+ library_names_spec='$libname.dll.a'
+ # DLL is installed to $(libdir)/../bin by postinstall_cmds
+ postinstall_cmds='base_file=`basename \${file}`~
+ dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
+ dldir=$destdir/`dirname \$dlpath`~
+ test -d \$dldir || mkdir -p \$dldir~
+ $install_prog $dir/$dlname \$dldir/$dlname~
+ chmod a+x \$dldir/$dlname~
+ if test -n '\''$stripme'\'' && test -n '\''$striplib'\''; then
+ eval '\''$striplib \$dldir/$dlname'\'' || exit \$?;
+ fi'
+ postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
+ dlpath=$dir/\$dldll~
+ $RM \$dlpath'
+ shlibpath_overrides_runpath=yes
+
+ case $host_os in
+ cygwin*)
+ # Cygwin DLLs use 'cyg' prefix rather than 'lib'
+ soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
+ sys_lib_search_path_spec="/usr/lib /lib/w32api /lib /usr/local/lib"
+ ;;
+ mingw* | cegcc*)
+ # MinGW DLLs use traditional 'lib' prefix
+ soname_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
+ sys_lib_search_path_spec=`$CC -print-search-dirs | $GREP "^libraries:" | $SED -e "s/^libraries://" -e "s,=/,/,g"`
+ if $ECHO "$sys_lib_search_path_spec" | $GREP ';[c-zC-Z]:/' >/dev/null; then
+ # It is most probably a Windows format PATH printed by
+ # mingw gcc, but we are running on Cygwin. Gcc prints its search
+ # path with ; separators, and with drive letters. We can handle the
+ # drive letters (cygwin fileutils understands them), so leave them,
+ # especially as we might pass files found there to a mingw objdump,
+ # which wouldn't understand a cygwinified path. Ahh.
+ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
+ else
+ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
+ fi
+ ;;
+ pw32*)
+ # pw32 DLLs use 'pw' prefix rather than 'lib'
+ library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext}'
+ ;;
+ esac
+ ;;
+
+ *)
+ library_names_spec='${libname}`echo ${release} | $SED -e 's/[.]/-/g'`${versuffix}${shared_ext} $libname.lib'
+ ;;
+ esac
+ dynamic_linker='Win32 ld.exe'
+ # FIXME: first we should search . and the directory the executable is in
+ shlibpath_var=PATH
+ ;;
+
+darwin* | rhapsody*)
+ dynamic_linker="$host_os dyld"
+ version_type=darwin
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${major}$shared_ext ${libname}$shared_ext'
+ soname_spec='${libname}${release}${major}$shared_ext'
+ shlibpath_overrides_runpath=yes
+ shlibpath_var=DYLD_LIBRARY_PATH
+ shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
+
+ sys_lib_dlsearch_path_spec='/usr/local/lib /lib /usr/lib'
+ ;;
+
+dgux*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ ;;
+
+freebsd1*)
+ dynamic_linker=no
+ ;;
+
+freebsd* | dragonfly*)
+ # DragonFly does not have aout. When/if they implement a new
+ # versioning mechanism, adjust this.
+ if test -x /usr/bin/objformat; then
+ objformat=`/usr/bin/objformat`
+ else
+ case $host_os in
+ freebsd[123]*) objformat=aout ;;
+ *) objformat=elf ;;
+ esac
+ fi
+ version_type=freebsd-$objformat
+ case $version_type in
+ freebsd-elf*)
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}'
+ need_version=no
+ need_lib_prefix=no
+ ;;
+ freebsd-*)
+ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname${shared_ext}$versuffix'
+ need_version=yes
+ ;;
+ esac
+ shlibpath_var=LD_LIBRARY_PATH
+ case $host_os in
+ freebsd2*)
+ shlibpath_overrides_runpath=yes
+ ;;
+ freebsd3.[01]* | freebsdelf3.[01]*)
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+ freebsd3.[2-9]* | freebsdelf3.[2-9]* | \
+ freebsd4.[0-5] | freebsdelf4.[0-5] | freebsd4.1.1 | freebsdelf4.1.1)
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+ *) # from 4.6 on, and DragonFly
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+ esac
+ ;;
+
+gnu*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ hardcode_into_libs=yes
+ ;;
+
+hpux9* | hpux10* | hpux11*)
+ # Give a soname corresponding to the major version so that dld.sl refuses to
+ # link against other versions.
+ version_type=sunos
+ need_lib_prefix=no
+ need_version=no
+ case $host_cpu in
+ ia64*)
+ shrext_cmds='.so'
+ hardcode_into_libs=yes
+ dynamic_linker="$host_os dld.so"
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ if test "X$HPUX_IA64_MODE" = X32; then
+ sys_lib_search_path_spec="/usr/lib/hpux32 /usr/local/lib/hpux32 /usr/local/lib"
+ else
+ sys_lib_search_path_spec="/usr/lib/hpux64 /usr/local/lib/hpux64"
+ fi
+ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec
+ ;;
+ hppa*64*)
+ shrext_cmds='.sl'
+ hardcode_into_libs=yes
+ dynamic_linker="$host_os dld.sl"
+ shlibpath_var=LD_LIBRARY_PATH # How should we handle SHLIB_PATH
+ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ sys_lib_search_path_spec="/usr/lib/pa20_64 /usr/ccs/lib/pa20_64"
+ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec
+ ;;
+ *)
+ shrext_cmds='.sl'
+ dynamic_linker="$host_os dld.sl"
+ shlibpath_var=SHLIB_PATH
+ shlibpath_overrides_runpath=no # +s is required to enable SHLIB_PATH
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ ;;
+ esac
+ # HP-UX runs *really* slowly unless shared libraries are mode 555.
+ postinstall_cmds='chmod 555 $lib'
+ ;;
+
+interix[3-9]*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ dynamic_linker='Interix 3.x ld.so.1 (PE, like ELF)'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
+irix5* | irix6* | nonstopux*)
+ case $host_os in
+ nonstopux*) version_type=nonstopux ;;
+ *)
+ if test "$lt_cv_prog_gnu_ld" = yes; then
+ version_type=linux
+ else
+ version_type=irix
+ fi ;;
+ esac
+ need_lib_prefix=no
+ need_version=no
+ soname_spec='${libname}${release}${shared_ext}$major'
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}'
+ case $host_os in
+ irix5* | nonstopux*)
+ libsuff= shlibsuff=
+ ;;
+ *)
+ case $LD in # libtool.m4 will add one of these switches to LD
+ *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ")
+ libsuff= shlibsuff= libmagic=32-bit;;
+ *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ")
+ libsuff=32 shlibsuff=N32 libmagic=N32;;
+ *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ")
+ libsuff=64 shlibsuff=64 libmagic=64-bit;;
+ *) libsuff= shlibsuff= libmagic=never-match;;
+ esac
+ ;;
+ esac
+ shlibpath_var=LD_LIBRARY${shlibsuff}_PATH
+ shlibpath_overrides_runpath=no
+ sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}"
+ sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}"
+ hardcode_into_libs=yes
+ ;;
+
+# No shared lib support for Linux oldld, aout, or coff.
+linux*oldld* | linux*aout* | linux*coff*)
+ dynamic_linker=no
+ ;;
+
+# This must be Linux ELF.
+linux* | k*bsd*-gnu)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ # Some binutils ld are patched to set DT_RUNPATH
+ save_LDFLAGS=$LDFLAGS
+ save_libdir=$libdir
+ eval "libdir=/foo; wl=\"$lt_prog_compiler_wl_CXX\"; \
+ LDFLAGS=\"\$LDFLAGS $hardcode_libdir_flag_spec_CXX\""
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ if ($OBJDUMP -p conftest$ac_exeext) 2>/dev/null | grep "RUNPATH.*$libdir" >/dev/null; then
+ shlibpath_overrides_runpath=yes
+fi
+
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ LDFLAGS=$save_LDFLAGS
+ libdir=$save_libdir
+
+ # This implies no fast_install, which is unacceptable.
+ # Some rework will be needed to allow for fast_install
+ # before this can be enabled.
+ hardcode_into_libs=yes
+
+ # Add ABI-specific directories to the system library path.
+ sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /lib /usr/lib"
+
+ # Append ld.so.conf contents to the search path
+ if test -f /etc/ld.so.conf; then
+ lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \$2)); skip = 1; } { if (!skip) print \$0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+ sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
+ fi
+
+ # We used to test for /lib/ld.so.1 and disable shared libraries on
+ # powerpc, because MkLinux only supported shared libraries with the
+ # GNU dynamic linker. Since this was broken with cross compilers,
+ # most powerpc-linux boxes support dynamic linking these days and
+ # people can always --disable-shared, the test was removed, and we
+ # assume the GNU/Linux dynamic linker is in use.
+ dynamic_linker='GNU/Linux ld.so'
+ ;;
+
+netbsd*)
+ version_type=sunos
+ need_lib_prefix=no
+ need_version=no
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir'
+ dynamic_linker='NetBSD (a.out) ld.so'
+ else
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ dynamic_linker='NetBSD ld.elf_so'
+ fi
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+
+newsos6)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ ;;
+
+*nto* | *qnx*)
+ version_type=qnx
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ dynamic_linker='ldqnx.so'
+ ;;
+
+openbsd*)
+ version_type=sunos
+ sys_lib_dlsearch_path_spec="/usr/lib"
+ need_lib_prefix=no
+ # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs.
+ case $host_os in
+ openbsd3.3 | openbsd3.3.*) need_version=yes ;;
+ *) need_version=no ;;
+ esac
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ case $host_os in
+ openbsd2.[89] | openbsd2.[89].*)
+ shlibpath_overrides_runpath=no
+ ;;
+ *)
+ shlibpath_overrides_runpath=yes
+ ;;
+ esac
+ else
+ shlibpath_overrides_runpath=yes
+ fi
+ ;;
+
+os2*)
+ libname_spec='$name'
+ shrext_cmds=".dll"
+ need_lib_prefix=no
+ library_names_spec='$libname${shared_ext} $libname.a'
+ dynamic_linker='OS/2 ld.exe'
+ shlibpath_var=LIBPATH
+ ;;
+
+osf3* | osf4* | osf5*)
+ version_type=osf
+ need_lib_prefix=no
+ need_version=no
+ soname_spec='${libname}${release}${shared_ext}$major'
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ sys_lib_search_path_spec="/usr/shlib /usr/ccs/lib /usr/lib/cmplrs/cc /usr/lib /usr/local/lib /var/shlib"
+ sys_lib_dlsearch_path_spec="$sys_lib_search_path_spec"
+ ;;
+
+rdos*)
+ dynamic_linker=no
+ ;;
+
+solaris*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ # ldd complains unless libraries are executable
+ postinstall_cmds='chmod +x $lib'
+ ;;
+
+sunos4*)
+ version_type=sunos
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/usr/etc" ldconfig $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ if test "$with_gnu_ld" = yes; then
+ need_lib_prefix=no
+ fi
+ need_version=yes
+ ;;
+
+sysv4 | sysv4.3*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ case $host_vendor in
+ sni)
+ shlibpath_overrides_runpath=no
+ need_lib_prefix=no
+ runpath_var=LD_RUN_PATH
+ ;;
+ siemens)
+ need_lib_prefix=no
+ ;;
+ motorola)
+ need_lib_prefix=no
+ need_version=no
+ shlibpath_overrides_runpath=no
+ sys_lib_search_path_spec='/lib /usr/lib /usr/ccs/lib'
+ ;;
+ esac
+ ;;
+
+sysv4*MP*)
+ if test -d /usr/nec ;then
+ version_type=linux
+ library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}'
+ soname_spec='$libname${shared_ext}.$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ fi
+ ;;
+
+sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*)
+ version_type=freebsd-elf
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ if test "$with_gnu_ld" = yes; then
+ sys_lib_search_path_spec='/usr/local/lib /usr/gnu/lib /usr/ccs/lib /usr/lib /lib'
+ else
+ sys_lib_search_path_spec='/usr/ccs/lib /usr/lib'
+ case $host_os in
+ sco3.2v5*)
+ sys_lib_search_path_spec="$sys_lib_search_path_spec /lib"
+ ;;
+ esac
+ fi
+ sys_lib_dlsearch_path_spec='/usr/lib'
+ ;;
+
+tpf*)
+ # TPF is a cross-target only. Preferred cross-host = GNU/Linux.
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
+uts4*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ ;;
+
+*)
+ dynamic_linker=no
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: result: $dynamic_linker" >&5
+$as_echo "$dynamic_linker" >&6; }
+test "$dynamic_linker" = no && can_build_shared=no
+
+variables_saved_for_relink="PATH $shlibpath_var $runpath_var"
+if test "$GCC" = yes; then
+ variables_saved_for_relink="$variables_saved_for_relink GCC_EXEC_PREFIX COMPILER_PATH LIBRARY_PATH"
+fi
+
+if test "${lt_cv_sys_lib_search_path_spec+set}" = set; then
+ sys_lib_search_path_spec="$lt_cv_sys_lib_search_path_spec"
+fi
+if test "${lt_cv_sys_lib_dlsearch_path_spec+set}" = set; then
+ sys_lib_dlsearch_path_spec="$lt_cv_sys_lib_dlsearch_path_spec"
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ { $as_echo "$as_me:$LINENO: checking how to hardcode library paths into programs" >&5
+$as_echo_n "checking how to hardcode library paths into programs... " >&6; }
+hardcode_action_CXX=
+if test -n "$hardcode_libdir_flag_spec_CXX" ||
+ test -n "$runpath_var_CXX" ||
+ test "X$hardcode_automatic_CXX" = "Xyes" ; then
+
+ # We can hardcode non-existent directories.
+ if test "$hardcode_direct_CXX" != no &&
+ # If the only mechanism to avoid hardcoding is shlibpath_var, we
+ # have to relink, otherwise we might link with an installed library
+ # when we should be linking with a yet-to-be-installed one
+ ## test "$_LT_TAGVAR(hardcode_shlibpath_var, CXX)" != no &&
+ test "$hardcode_minus_L_CXX" != no; then
+ # Linking always hardcodes the temporary library directory.
+ hardcode_action_CXX=relink
+ else
+ # We can link without hardcoding, and we can hardcode nonexisting dirs.
+ hardcode_action_CXX=immediate
+ fi
+else
+ # We cannot hardcode anything, or else we can only hardcode existing
+ # directories.
+ hardcode_action_CXX=unsupported
+fi
+{ $as_echo "$as_me:$LINENO: result: $hardcode_action_CXX" >&5
+$as_echo "$hardcode_action_CXX" >&6; }
+
+if test "$hardcode_action_CXX" = relink ||
+ test "$inherit_rpath_CXX" = yes; then
+ # Fast installation is not supported
+ enable_fast_install=no
+elif test "$shlibpath_overrides_runpath" = yes ||
+ test "$enable_shared" = no; then
+ # Fast installation is not necessary
+ enable_fast_install=needless
+fi
+
+
+
+
+
+
+
+ fi # test -n "$compiler"
+
+ CC=$lt_save_CC
+ LDCXX=$LD
+ LD=$lt_save_LD
+ GCC=$lt_save_GCC
+ with_gnu_ld=$lt_save_with_gnu_ld
+ lt_cv_path_LDCXX=$lt_cv_path_LD
+ lt_cv_path_LD=$lt_save_path_LD
+ lt_cv_prog_gnu_ldcxx=$lt_cv_prog_gnu_ld
+ lt_cv_prog_gnu_ld=$lt_save_with_gnu_ld
+fi # test "$_lt_caught_CXX_error" != yes
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+
+
+
+
+
+
+
+
+
+
+
+ ac_config_commands="$ac_config_commands libtool"
+
+
+
+
+# Only expand once:
+
+
+
+# Checks for --enable-loki
+
+ { $as_echo "$as_me:$LINENO: checking whether to enable installation of the LOKI databse" >&5
+$as_echo_n "checking whether to enable installation of the LOKI databse... " >&6; }
+
+ # Check whether --enable-loki was given.
+if test "${enable_loki+set}" = set; then
+ enableval=$enable_loki;
+else
+ enable_loki=yes
+fi
+
+ if test "x$enable_loki" = "xno"; then
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ else
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ fi
+ ax_enable_loki=$enable_loki
+ if test x$enable_loki = xyes; then
+ LOKI_INSTALL_TRUE=
+ LOKI_INSTALL_FALSE='#'
+else
+ LOKI_INSTALL_TRUE='#'
+ LOKI_INSTALL_FALSE=
+fi
+
+
+
+# Checks for libraries.
+# FIXME: Replace `main' with a function in `-lmysqlclient':
+
+{ $as_echo "$as_me:$LINENO: checking for main in -lmysqlclient" >&5
+$as_echo_n "checking for main in -lmysqlclient... " >&6; }
+if test "${ac_cv_lib_mysqlclient_main+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lmysqlclient $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_mysqlclient_main=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_mysqlclient_main=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_mysqlclient_main" >&5
+$as_echo "$ac_cv_lib_mysqlclient_main" >&6; }
+if test "x$ac_cv_lib_mysqlclient_main" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBMYSQLCLIENT 1
+_ACEOF
+
+ LIBS="-lmysqlclient $LIBS"
+
+fi
+
+# FIXME: This needs to be fixed to correctly check for mysql client
+ if false; then
+ HAVE_MYSQL_TRUE=
+ HAVE_MYSQL_FALSE='#'
+else
+ HAVE_MYSQL_TRUE='#'
+ HAVE_MYSQL_FALSE=
+fi
+
+
+
+{ $as_echo "$as_me:$LINENO: checking for main in -lpthread" >&5
+$as_echo_n "checking for main in -lpthread... " >&6; }
+if test "${ac_cv_lib_pthread_main+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lpthread $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_pthread_main=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_pthread_main=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_pthread_main" >&5
+$as_echo "$ac_cv_lib_pthread_main" >&6; }
+if test "x$ac_cv_lib_pthread_main" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBPTHREAD 1
+_ACEOF
+
+ LIBS="-lpthread $LIBS"
+
+fi
+
+
+{ $as_echo "$as_me:$LINENO: checking for main in -lz" >&5
+$as_echo_n "checking for main in -lz... " >&6; }
+if test "${ac_cv_lib_z_main+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lz $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_z_main=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_z_main=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_z_main" >&5
+$as_echo "$ac_cv_lib_z_main" >&6; }
+if test "x$ac_cv_lib_z_main" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBZ 1
+_ACEOF
+
+ LIBS="-lz $LIBS"
+
+fi
+
+
+# Checks for libraries.
+
+
+# Check whether --with-gsl-prefix was given.
+if test "${with_gsl_prefix+set}" = set; then
+ withval=$with_gsl_prefix; gsl_prefix="$withval"
+else
+ gsl_prefix=""
+fi
+
+
+# Check whether --with-gsl-exec-prefix was given.
+if test "${with_gsl_exec_prefix+set}" = set; then
+ withval=$with_gsl_exec_prefix; gsl_exec_prefix="$withval"
+else
+ gsl_exec_prefix=""
+fi
+
+# Check whether --enable-gsltest was given.
+if test "${enable_gsltest+set}" = set; then
+ enableval=$enable_gsltest;
+else
+ enable_gsltest=yes
+fi
+
+
+ if test "x${GSL_CONFIG+set}" != xset ; then
+ if test "x$gsl_prefix" != x ; then
+ GSL_CONFIG="$gsl_prefix/bin/gsl-config"
+ fi
+ if test "x$gsl_exec_prefix" != x ; then
+ GSL_CONFIG="$gsl_exec_prefix/bin/gsl-config"
+ fi
+ fi
+
+ # Extract the first word of "gsl-config", so it can be a program name with args.
+set dummy gsl-config; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_path_GSL_CONFIG+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ case $GSL_CONFIG in
+ [\\/]* | ?:[\\/]*)
+ ac_cv_path_GSL_CONFIG="$GSL_CONFIG" # Let the user override the test with a path.
+ ;;
+ *)
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_GSL_CONFIG="$as_dir/$ac_word$ac_exec_ext"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+ test -z "$ac_cv_path_GSL_CONFIG" && ac_cv_path_GSL_CONFIG="no"
+ ;;
+esac
+fi
+GSL_CONFIG=$ac_cv_path_GSL_CONFIG
+if test -n "$GSL_CONFIG"; then
+ { $as_echo "$as_me:$LINENO: result: $GSL_CONFIG" >&5
+$as_echo "$GSL_CONFIG" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ min_gsl_version=1.0
+ { $as_echo "$as_me:$LINENO: checking for GSL - version >= $min_gsl_version" >&5
+$as_echo_n "checking for GSL - version >= $min_gsl_version... " >&6; }
+ no_gsl=""
+ if test "$GSL_CONFIG" = "no" ; then
+ no_gsl=yes
+ else
+ GSL_CFLAGS=$($GSL_CONFIG --cflags)
+ GSL_LDFLAGS=$($GSL_CONFIG --libs | sed 's/ *-l^ *//g')
+ GSL_LIBS=$($GSL_CONFIG --libs | sed -e "s|$GSL_LDFLAGS||" -e 's/^ *//g')
+
+ gsl_major_version=`$GSL_CONFIG --version | \
+ sed 's/^\([0-9]*\).*/\1/'`
+ if test "x${gsl_major_version}" = "x" ; then
+ gsl_major_version=0
+ fi
+
+ gsl_minor_version=`$GSL_CONFIG --version | \
+ sed 's/^\([0-9]*\)\.\{0,1\}\([0-9]*\).*/\2/'`
+ if test "x${gsl_minor_version}" = "x" ; then
+ gsl_minor_version=0
+ fi
+
+ gsl_micro_version=`$GSL_CONFIG --version | \
+ sed 's/^\([0-9]*\)\.\{0,1\}\([0-9]*\)\.\{0,1\}\([0-9]*\).*/\3/'`
+ if test "x${gsl_micro_version}" = "x" ; then
+ gsl_micro_version=0
+ fi
+
+ if test "x$enable_gsltest" = "xyes" ; then
+ ac_save_CFLAGS="$CFLAGS"
+ ac_save_LIBS="$LIBS"
+ CFLAGS="$CFLAGS $GSL_CFLAGS"
+ LIBS="$LIBS $GSL_LDFLAGS $GSL_LIBS"
+
+ rm -f conf.gsltest
+ if test "$cross_compiling" = yes; then
+ echo $ac_n "cross compiling; assumed OK... $ac_c"
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+char* my_strdup (const char *str);
+
+char*
+my_strdup (const char *str)
+{
+ char *new_str;
+
+ if (str)
+ {
+ new_str = (char *)malloc ((strlen (str) + 1) * sizeof(char));
+ strcpy (new_str, str);
+ }
+ else
+ new_str = NULL;
+
+ return new_str;
+}
+
+int main (void)
+{
+ int major = 0, minor = 0, micro = 0;
+ int n;
+ char *tmp_version;
+
+ system ("touch conf.gsltest");
+
+ /* HP/UX 9 (%@#!) writes to sscanf strings */
+ tmp_version = my_strdup("$min_gsl_version");
+
+ n = sscanf(tmp_version, "%d.%d.%d", &major, &minor, µ) ;
+
+ if (n != 2 && n != 3) {
+ printf("%s, bad version string\n", "$min_gsl_version");
+ exit(1);
+ }
+
+ if (($gsl_major_version > major) ||
+ (($gsl_major_version == major) && ($gsl_minor_version > minor)) ||
+ (($gsl_major_version == major) && ($gsl_minor_version == minor) && ($gsl_micro_version >= micro)))
+ {
+ exit(0);
+ }
+ else
+ {
+ exit(1);
+ }
+}
+
+
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ :
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+no_gsl=yes
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+ CFLAGS="$ac_save_CFLAGS"
+ LIBS="$ac_save_LIBS"
+ fi
+ fi
+ if test "x$no_gsl" = x ; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_GSL /**/
+_ACEOF
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ if test "$GSL_CONFIG" = "no" ; then
+ echo "*** The gsl-config script installed by GSL could not be found"
+ echo "*** If GSL was installed in PREFIX, make sure PREFIX/bin is in"
+ echo "*** your path, or set the GSL_CONFIG environment variable to the"
+ echo "*** full path to gsl-config."
+ else
+ if test -f conf.gsltest ; then
+ :
+ else
+ echo "*** Could not run GSL test program, checking why..."
+ CFLAGS="$CFLAGS $GSL_CFLAGS"
+ LIBS="$LIBS $GSL_LDFLAGS $GSL_LIBS"
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+#include <stdio.h>
+
+int
+main ()
+{
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ echo "*** The test program compiled, but did not run. This usually means"
+ echo "*** that the run-time linker is not finding GSL or finding the wrong"
+ echo "*** version of GSL. If it is not finding GSL, you'll need to set your"
+ echo "*** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point"
+ echo "*** to the installed location Also, make sure you have run ldconfig if that"
+ echo "*** is required on your system"
+ echo "***"
+ echo "*** If you have an old version installed, it is best to remove it, although"
+ echo "*** you may also be able to get things to work by modifying LD_LIBRARY_PATH"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ echo "*** The test program failed to compile or link. See the file config.log for the"
+ echo "*** exact error that occured. This usually means GSL was incorrectly installed"
+ echo "*** or that you have moved GSL since it was installed. In the latter case, you"
+ echo "*** may want to edit the gsl-config script: $GSL_CONFIG"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ CFLAGS="$ac_save_CFLAGS"
+ LIBS="$ac_save_LIBS"
+ fi
+ fi
+# GSL_CFLAGS=""
+# GSL_LIBS=""
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_GSL /**/
+_ACEOF
+
+ fi
+
+
+
+ rm -f conf.gsltest
+
+
+# Biobin/ biofilter use sqlite 3.5.4 (group_concat)
+
+pkg_failed=no
+{ $as_echo "$as_me:$LINENO: checking for SQLITE" >&5
+$as_echo_n "checking for SQLITE... " >&6; }
+
+if test -n "$SQLITE_CFLAGS"; then
+ pkg_cv_SQLITE_CFLAGS="$SQLITE_CFLAGS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"sqlite3 >= 3.5.4\"") >&5
+ ($PKG_CONFIG --exists --print-errors "sqlite3 >= 3.5.4") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_SQLITE_CFLAGS=`$PKG_CONFIG --cflags "sqlite3 >= 3.5.4" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+if test -n "$SQLITE_LIBS"; then
+ pkg_cv_SQLITE_LIBS="$SQLITE_LIBS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"sqlite3 >= 3.5.4\"") >&5
+ ($PKG_CONFIG --exists --print-errors "sqlite3 >= 3.5.4") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_SQLITE_LIBS=`$PKG_CONFIG --libs "sqlite3 >= 3.5.4" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+
+
+
+if test $pkg_failed = yes; then
+
+if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then
+ _pkg_short_errors_supported=yes
+else
+ _pkg_short_errors_supported=no
+fi
+ if test $_pkg_short_errors_supported = yes; then
+ SQLITE_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "sqlite3 >= 3.5.4" 2>&1`
+ else
+ SQLITE_PKG_ERRORS=`$PKG_CONFIG --print-errors "sqlite3 >= 3.5.4" 2>&1`
+ fi
+ # Put the nasty error message in config.log where it belongs
+ echo "$SQLITE_PKG_ERRORS" >&5
+
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_SQLITE /**/
+_ACEOF
+
+elif test $pkg_failed = untried; then
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_SQLITE /**/
+_ACEOF
+
+else
+ SQLITE_CFLAGS=$pkg_cv_SQLITE_CFLAGS
+ SQLITE_LIBS=$pkg_cv_SQLITE_LIBS
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_SQLITE /**/
+_ACEOF
+
+fi
+
+pkg_failed=no
+{ $as_echo "$as_me:$LINENO: checking for PNG" >&5
+$as_echo_n "checking for PNG... " >&6; }
+
+if test -n "$PNG_CFLAGS"; then
+ pkg_cv_PNG_CFLAGS="$PNG_CFLAGS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"libpng >= 1.2.10\"") >&5
+ ($PKG_CONFIG --exists --print-errors "libpng >= 1.2.10") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_PNG_CFLAGS=`$PKG_CONFIG --cflags "libpng >= 1.2.10" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+if test -n "$PNG_LIBS"; then
+ pkg_cv_PNG_LIBS="$PNG_LIBS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"libpng >= 1.2.10\"") >&5
+ ($PKG_CONFIG --exists --print-errors "libpng >= 1.2.10") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_PNG_LIBS=`$PKG_CONFIG --libs "libpng >= 1.2.10" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+
+
+
+if test $pkg_failed = yes; then
+
+if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then
+ _pkg_short_errors_supported=yes
+else
+ _pkg_short_errors_supported=no
+fi
+ if test $_pkg_short_errors_supported = yes; then
+ PNG_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "libpng >= 1.2.10" 2>&1`
+ else
+ PNG_PKG_ERRORS=`$PKG_CONFIG --print-errors "libpng >= 1.2.10" 2>&1`
+ fi
+ # Put the nasty error message in config.log where it belongs
+ echo "$PNG_PKG_ERRORS" >&5
+
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_PNG /**/
+_ACEOF
+
+elif test $pkg_failed = untried; then
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_PNG /**/
+_ACEOF
+
+else
+ PNG_CFLAGS=$pkg_cv_PNG_CFLAGS
+ PNG_LIBS=$pkg_cv_PNG_LIBS
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_PNG /**/
+_ACEOF
+
+fi
+
+pkg_failed=no
+{ $as_echo "$as_me:$LINENO: checking for LIBR" >&5
+$as_echo_n "checking for LIBR... " >&6; }
+
+if test -n "$LIBR_CFLAGS"; then
+ pkg_cv_LIBR_CFLAGS="$LIBR_CFLAGS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"libR >= 2.10\"") >&5
+ ($PKG_CONFIG --exists --print-errors "libR >= 2.10") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_LIBR_CFLAGS=`$PKG_CONFIG --cflags "libR >= 2.10" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+if test -n "$LIBR_LIBS"; then
+ pkg_cv_LIBR_LIBS="$LIBR_LIBS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"libR >= 2.10\"") >&5
+ ($PKG_CONFIG --exists --print-errors "libR >= 2.10") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_LIBR_LIBS=`$PKG_CONFIG --libs "libR >= 2.10" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+
+
+
+if test $pkg_failed = yes; then
+
+if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then
+ _pkg_short_errors_supported=yes
+else
+ _pkg_short_errors_supported=no
+fi
+ if test $_pkg_short_errors_supported = yes; then
+ LIBR_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "libR >= 2.10" 2>&1`
+ else
+ LIBR_PKG_ERRORS=`$PKG_CONFIG --print-errors "libR >= 2.10" 2>&1`
+ fi
+ # Put the nasty error message in config.log where it belongs
+ echo "$LIBR_PKG_ERRORS" >&5
+
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_R /**/
+_ACEOF
+
+elif test $pkg_failed = untried; then
+
+cat >>confdefs.h <<\_ACEOF
+#define NO_R /**/
+_ACEOF
+
+else
+ LIBR_CFLAGS=$pkg_cv_LIBR_CFLAGS
+ LIBR_LIBS=$pkg_cv_LIBR_LIBS
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_R /**/
+_ACEOF
+
+fi
+
+
+# Check whether --with-freetype was given.
+if test "${with_freetype+set}" = set; then
+ withval=$with_freetype;
+ if test "$withval" = "no"; then
+ want_freetype="no"
+ elif test "$withval" = "yes"; then
+ want_freetype="yes"
+ ac_freetype_path=""
+ else
+ want_freetype="yes"
+ ac_freetype_path="$withval"
+ fi
+
+else
+ want_freetype="yes"
+fi
+
+
+
+
+# Check whether --with-freetype-libdir was given.
+if test "${with_freetype_libdir+set}" = set; then
+ withval=$with_freetype_libdir;
+ if test -d "$withval"
+ then
+ ac_freetype_lib_path="$withval"
+ else
+ { { $as_echo "$as_me:$LINENO: error: --with-freetype-libdir expected directory name" >&5
+$as_echo "$as_me: error: --with-freetype-libdir expected directory name" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+
+else
+ ac_freetype_lib_path=""
+
+fi
+
+
+if test "x$want_freetype" = "xyes"; then
+
+ freetype_compile=no
+ freetype_link=no
+
+ freetype_lib_version_req=2.2.0
+ freetype_lib_version_req_shorten=`expr $freetype_lib_version_req : '\([0-9]*\.[0-9]*\)'`
+ freetype_lib_version_req_major=`expr $freetype_lib_version_req : '\([0-9]*\)'`
+ freetype_lib_version_req_minor=`expr $freetype_lib_version_req : '[0-9]*\.\([0-9]*\)'`
+ freetype_lib_version_req_sub_minor=`expr $freetype_lib_version_req : '[0-9]*\.[0-9]*\.\([0-9]*\)'`
+ if test "x$freetype_lib_version_req_sub_minor" = "x" ; then
+ freetype_lib_version_req_sub_minor="0"
+ fi
+ WANT_FREETYPE_VERSION=`expr $freetype_lib_version_req_major \* 100000 \+ $freetype_lib_version_req_minor \* 100 \+ $freetype_lib_version_req_sub_minor`
+
+
+ if test "$ac_freetype_path" != ""; then
+ if test -d "$ac_freetype_path/include/freetype2" && test -r "$ac_freetype_path/include/freetype2"; then
+ FREETYPE_CPPFLAGS="-I$ac_freetype_path/include/freetype2"
+ else
+ FREETYPE_CPPFLAGS="-I$ac_freetype_path"
+ fi
+ else
+ FREETYPE_CPPFLAGS=`freetype-config --cflags`
+ fi
+
+
+ { $as_echo "$as_me:$LINENO: checking for Freetype >= $freetype_lib_version_req" >&5
+$as_echo_n "checking for Freetype >= $freetype_lib_version_req... " >&6; }
+
+ old_CPPFLAGS="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $FREETYPE_CPPFLAGS"
+ export CPPFLAGS
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ft2build.h>
+ #include FT_FREETYPE_H
+ #if FREETYPE_MAJOR*100000+FREETYPE_MINOR*100+FREETYPE_PATCH < $WANT_FREETYPE_VERSION
+ #error Freetype version too low.
+ #endif
+
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ freetype_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+
+ FREETYPE_LIBSTR=`freetype-config --libs`
+ if test "$ac_freetype_lib_path" != ""; then
+ FREETYPE_LDFLAGS="-L$ac_freetype_lib_path"
+ else
+ FREETYPE_LDFLAGS=`echo $FREETYPE_LIBSTR | sed 's/ *-la-zA-Z0-9*$//'`
+ fi
+ FREETYPE_LIB=`echo $FREETYPE_LIBSTR | grep -Go "\-la-zA-Z0-9*$"`
+
+ old_LDFLAGS="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $FREETYPE_LDFLAGS $FREETYPE_LIB"
+ export LDFLAGS
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ft2build.h>
+ #include FT_FREETYPE_H
+
+int
+main ()
+{
+FT_Library lib;
+ FT_Init_FreeType(&lib);
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ freetype_link=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ if test "x$freetype_compile" = "xyes" -a "x$freetype_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+
+
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_FREETYPE /**/
+_ACEOF
+
+ :
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ :
+ fi
+
+ CPPFLAGS="$old_CPPFLAGS"
+ LDFLAGS="$old_LDFLAGS"
+fi
+
+
+
+
+
+# Check whether --with-soci was given.
+if test "${with_soci+set}" = set; then
+ withval=$with_soci;
+ if test "$withval" = "no"; then
+ want_soci="no"
+ elif test "$withval" = "yes"; then
+ want_soci="yes"
+ ac_soci_path=""
+ else
+ want_soci="yes"
+ ac_soci_path="$withval"
+ fi
+
+else
+ want_soci="yes"
+fi
+
+
+
+
+# Check whether --with-soci-libdir was given.
+if test "${with_soci_libdir+set}" = set; then
+ withval=$with_soci_libdir;
+ if test -d "$withval"
+ then
+ ac_soci_lib_path="$withval"
+ else
+ { { $as_echo "$as_me:$LINENO: error: --with-soci-libdir expected directory name" >&5
+$as_echo "$as_me: error: --with-soci-libdir expected directory name" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+
+else
+ ac_soci_lib_path=""
+
+fi
+
+
+
+if test "x$want_soci" = "xyes"; then
+
+{ $as_echo "$as_me:$LINENO: checking for main in -ldl" >&5
+$as_echo_n "checking for main in -ldl... " >&6; }
+if test "${ac_cv_lib_dl_main+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-ldl $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+
+int
+main ()
+{
+return main ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_dl_main=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_dl_main=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_dl_main" >&5
+$as_echo "$ac_cv_lib_dl_main" >&6; }
+if test "x$ac_cv_lib_dl_main" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define HAVE_LIBDL 1
+_ACEOF
+
+ LIBS="-ldl $LIBS"
+
+fi
+
+ { $as_echo "$as_me:$LINENO: checking for SOCI core libraries" >&5
+$as_echo_n "checking for SOCI core libraries... " >&6; }
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+ succeeded=no
+
+
+ libsubdirs="lib"
+ ax_arch=`uname -m`
+ if test $ax_arch = x86_64 -o $ax_arch = ppc64 -o $ax_arch = s390x -o $ax_arch = sparc64; then
+ libsubdirs="lib64 lib"
+ fi
+
+ std_paths="/usr/local /usr /opt /opt/local"
+
+ if test "$ac_soci_path" != ""; then
+ if test -d "$ac_soci_path/include/soci" && test -r "$ac_soci_path/include/soci"; then
+ SOCI_CPPFLAGS="-I$ac_soci_path/include/soci"
+ else
+ SOCI_CPPFLAGS="-I$ac_soci_path/include"
+ fi
+
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $SOCI_CPPFLAGS"
+ export CPPFLAGS
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ include_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ else
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ include_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ if test "x$include_succeed" != "xyes"; then
+ PATH_LIST="`echo $CPLUS_INCLUDE_PATH | sed 's/:/ /g' | sed 's/\/include\/* */ /g'` $std_paths"
+ for ac_soci_path_tmp in $PATH_LIST; do
+ if test -r "$ac_soci_path_tmp/include/soci/soci.h"; then
+ SOCI_CPPFLAGS="-I$ac_soci_path_tmp/include/soci"
+ break;
+ elif test -r "$ac_soci_path_tmp/include/soci.h"; then
+ SOCI_CPPFLAGS="-I$ac_soci_path_tmp/include"
+ break;
+ fi
+ done
+
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $SOCI_CPPFLAGS"
+ export CPPFLAGS
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ include_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ fi
+ fi
+
+
+
+ SOCI_LDFLAGS=""
+ SOCI_LIB="-lsoci_core"
+
+ if test "$ac_soci_lib_path" != ""; then
+ SOCI_LDFLAGS="-L$ac_soci_lib_path"
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SOCI_LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+int
+main ()
+{
+soci::session dummy
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+
+ else
+ if test "$ac_soci_path" != ""; then
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_path/$libsubdir/libsoci_"* >/dev/null 2>&1 ; then
+ SOCI_LDFLAGS="-L$ac_soci_path/$libsubdir"
+ break;
+ fi
+ done
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SOCI_LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+int
+main ()
+{
+soci::session dummy
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+
+ if test "x$link_succeed" != "xyes"; then
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+int
+main ()
+{
+soci::session dummy
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+
+ if test "x$link_succeed" != "xyes"; then
+
+ PATH_LIST="`echo $LPATH | sed 's/:/ /g' | sed 's/\/lib\(64\)*\/* */ /g'` $std_paths"
+ for ac_soci_path_tmp in $PATH_LIST ; do
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_path_tmp/$libsubdir/libsoci_"* >/dev/null 2>&1 ; then
+ SOCI_LDFLAGS="-L$ac_soci_path_tmp/$libsubdir"
+ found_lib="yes"
+ break;
+ fi
+ done
+ if test "x$found_lib" = "xyes"; then break; fi
+ done
+ LDFLAGS="$LDFLAGS $SOCI_LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+int
+main ()
+{
+soci::session dummy
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+ fi
+ fi
+
+
+
+ if test "x$include_succeed" = "xyes" -a "x$link_succeed" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+
+
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_SOCI /**/
+_ACEOF
+
+ :
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ :
+ fi
+
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ LDFLAGS="$LDFLAGS_SAVED"
+fi
+
+
+
+
+# Check whether --with-soci-sqlite was given.
+if test "${with_soci_sqlite+set}" = set; then
+ withval=$with_soci_sqlite;
+ if test "$withval" = "no"; then
+ want_soci_sqlite="no"
+ elif test "$withval" = "yes"; then
+ want_soci_sqlite="yes"
+ ac_soci_sqlite_path=""
+ else
+ want_soci_sqlite="yes"
+ ac_soci_sqlite_path="$withval"
+ fi
+
+else
+ want_soci_sqlite="yes"
+fi
+
+
+
+
+# Check whether --with-soci-sqlite-libdir was given.
+if test "${with_soci_sqlite_libdir+set}" = set; then
+ withval=$with_soci_sqlite_libdir;
+ if test -d "$withval"
+ then
+ ac_soci_sqlite_lib_path="$withval"
+ else
+ { { $as_echo "$as_me:$LINENO: error: --with-soci-sqlite-libdir expected directory name" >&5
+$as_echo "$as_me: error: --with-soci-sqlite-libdir expected directory name" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+
+else
+ ac_soci_sqlite_lib_path=""
+
+fi
+
+
+
+if test "x$want_soci_sqlite" = "xyes"; then
+
+ { $as_echo "$as_me:$LINENO: checking for SOCI SQLite backend" >&5
+$as_echo_n "checking for SOCI SQLite backend... " >&6; }
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#ifndef HAVE_SQLITE
+ #error "Library not found"
+ #endif
+
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ have_sqlite=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ have_sqlite=no
+fi
+
+rm -f conftest.err conftest.$ac_ext
+
+ if test "x$have_sqlite" = "xno"; then
+
+pkg_failed=no
+{ $as_echo "$as_me:$LINENO: checking for SQLITE" >&5
+$as_echo_n "checking for SQLITE... " >&6; }
+
+if test -n "$SQLITE_CFLAGS"; then
+ pkg_cv_SQLITE_CFLAGS="$SQLITE_CFLAGS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"sqlite3 >= 3.3\"") >&5
+ ($PKG_CONFIG --exists --print-errors "sqlite3 >= 3.3") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_SQLITE_CFLAGS=`$PKG_CONFIG --cflags "sqlite3 >= 3.3" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+if test -n "$SQLITE_LIBS"; then
+ pkg_cv_SQLITE_LIBS="$SQLITE_LIBS"
+ elif test -n "$PKG_CONFIG"; then
+ if test -n "$PKG_CONFIG" && \
+ { ($as_echo "$as_me:$LINENO: \$PKG_CONFIG --exists --print-errors \"sqlite3 >= 3.3\"") >&5
+ ($PKG_CONFIG --exists --print-errors "sqlite3 >= 3.3") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; then
+ pkg_cv_SQLITE_LIBS=`$PKG_CONFIG --libs "sqlite3 >= 3.3" 2>/dev/null`
+else
+ pkg_failed=yes
+fi
+ else
+ pkg_failed=untried
+fi
+
+
+
+if test $pkg_failed = yes; then
+
+if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then
+ _pkg_short_errors_supported=yes
+else
+ _pkg_short_errors_supported=no
+fi
+ if test $_pkg_short_errors_supported = yes; then
+ SQLITE_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors "sqlite3 >= 3.3" 2>&1`
+ else
+ SQLITE_PKG_ERRORS=`$PKG_CONFIG --print-errors "sqlite3 >= 3.3" 2>&1`
+ fi
+ # Put the nasty error message in config.log where it belongs
+ echo "$SQLITE_PKG_ERRORS" >&5
+
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ have_sqlite=no;
+cat >>confdefs.h <<\_ACEOF
+#define NO_SQLITE /**/
+_ACEOF
+
+elif test $pkg_failed = untried; then
+ have_sqlite=no;
+cat >>confdefs.h <<\_ACEOF
+#define NO_SQLITE /**/
+_ACEOF
+
+else
+ SQLITE_CFLAGS=$pkg_cv_SQLITE_CFLAGS
+ SQLITE_LIBS=$pkg_cv_SQLITE_LIBS
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ have_sqlite=yes;
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_SQLITE /**/
+_ACEOF
+
+fi
+ fi
+
+ # Only bother if we actually HAVE SQLite, o/w it's pointless!
+ if test "x$have_sqlite" = "xyes"; then
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+ include_succeed=no
+ link_succeed=no
+
+
+ libsubdirs="lib"
+ ax_arch=`uname -m`
+ if test $ax_arch = x86_64 -o $ax_arch = ppc64 -o $ax_arch = s390x -o $ax_arch = sparc64; then
+ libsubdirs="lib64 lib"
+ fi
+
+ std_paths="/usr/local /usr /opt /opt/local"
+
+ if test "$ac_soci_sqlite_path" != ""; then
+ if test -d "$ac_soci_sqlite_path/include/soci/sqlite3" && test -r "$ac_soci_sqlite_path/include/soci/sqlite3"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path/include/soci/sqlite3"
+ else
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path/include"
+ fi
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $SQLITE_CPPFLAGS $SOCI_CPPFLAGS $SOCI_SQLITE_CPPFLAGS"
+ export CPPFLAGS
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+ #include <soci-sqlite3.h>
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ include_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ else
+
+ SOCI_SQLITE_CPPFLAGS=""
+ CPPFLAGS_SAVED="$CPPFLAGS"
+
+ if test "$SOCI_CPPFLAGS" != ""; then
+ ac_soci_incl_dir="`echo $SOCI_CPPFLAGS | sed 's/^-I//g'`"
+ if test -r "$ac_soci_incl_dir/sqlite3/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_incl_dir/sqlite3"
+ elif test -r "$ac_soci_incl_dir/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_incl_dir"
+ else
+ SOCI_SQLITE_CPPFLAGS=""
+ fi
+ fi
+
+ CPPFLAGS="$CPPFLAGS_SAVED $SQLITE_CPPFLAGS $SOCI_CPPFLAGS $SOCI_SQLITE_CPPFLAGS"
+ export CPPFLAGS
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+ #include <soci-sqlite3.h>
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ include_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ if test "x$include_succeed" != "xyes"; then
+ PATH_LIST="`echo $CPLUS_INCLUDE_PATH | sed 's/:/ /g' | sed 's/\/include\/* */ /g'` $std_paths"
+ for ac_soci_path_tmp in $PATH_LIST; do
+ if test -r "$ac_soci_sqlite_path_tmp/include/soci/sqlite3/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path_tmp/include/soci/sqlite3"
+ break;
+ elif test -r "$ac_soci_sqlite_path_tmp/include/soci/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path_tmp/include/soci"
+ break;
+ elif test -r "$ac_soci_sqlite_path_tmp/include/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path_tmp/include"
+ break;
+ fi
+ done
+ CPPFLAGS="$CPPFLAGS_SAVED $SQLITE_CPPFLAGS $SOCI_CPPFLAGS $SOCI_SQLITE_CPPFLAGS"
+ export CPPFLAGS
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+ #include <soci-sqlite3.h>
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ include_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ fi
+ fi
+
+ SOCI_SQLITE_LDFLAGS=""
+ SOCI_SQLITE_LIB="-lsoci_sqlite3"
+
+ if test "$ac_soci_sqlite_lib_path" != ""; then
+ SOCI_SQLITE_LDFLAGS="-L$ac_soci_sqlite_lib_path"
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+ #include <soci-sqlite3.h>
+int
+main ()
+{
+soci::session dummy(soci::sqlite3,"")
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ else
+
+
+ LDFLAGS_SAVED="$LDFLAGS"
+
+ # Check for SQLITE relative to sqlite path
+ if test "$ac_soci_sqlite_path" != ""; then
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_path/$libsubdir/libsoci_sqlite3"* >/dev/null 2>&1 ; then
+ SOCI_SQLITE_LDFLAGS="-L$ac_soci_path/$libsubdir"
+ break;
+ fi
+ done
+
+ LDFLAGS="$LDFLAGS_SAVED $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+ #include <soci-sqlite3.h>
+int
+main ()
+{
+soci::session dummy(soci::sqlite3,"")
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+ fi
+
+ if test "x$link_succeed" != "xyes"; then
+
+ LDFLAGS="$LDFLAGS_SAVED $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+ #include <soci-sqlite3.h>
+int
+main ()
+{
+soci::session dummy(soci::sqlite3,"")
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+
+ if test "x$link_succeed" != "xyes"; then
+
+ for ac_soci_sqlite_path_tmp in `echo $LPATH | sed 's/:/ /g' | sed 's/\/lib\(64\)*\/* */ /g'` "$std_paths" ; do
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_sqlite_path_tmp/$libsubdir/libsoci_sqlite3"* >/dev/null 2>&1 ; then
+ SOCI_SQLITE_LDFLAGS="-L$ac_soci_sqlite_path_tmp/$libsubdir"
+ found_lib="yes"
+ break;
+ fi
+ done
+ if test "x$found_lib" = "xyes"; then break; fi
+ done
+
+ LDFLAGS="$LDFLAGS_SAVED $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <soci.h>
+ #include <soci-sqlite3.h>
+int
+main ()
+{
+soci::session dummy(soci::sqlite3,"")
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ link_succeed=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+
+ fi
+ fi
+ fi
+ fi
+
+
+ if test "x$include_succeed" = "xyes" && test "x$link_succeed" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+
+
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_SOCI_SQLITE /**/
+_ACEOF
+
+ :
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ :
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ LDFLAGS="$LDFLAGS_SAVED"
+fi
+
+
+
+# If desired, automake will have a conditional "USE_R" which will be true
+# If not, "USE_R" will be false. Also, will define the macro "USE_R" on the
+# command line for compilation flags.
+
+#Check for boost
+
+
+# Check whether --with-boost was given.
+if test "${with_boost+set}" = set; then
+ withval=$with_boost;
+ if test "$withval" = "no"; then
+ want_boost="no"
+ elif test "$withval" = "yes"; then
+ want_boost="yes"
+ ac_boost_path=""
+ else
+ want_boost="yes"
+ ac_boost_path="$withval"
+ fi
+
+else
+ want_boost="yes"
+fi
+
+
+
+
+# Check whether --with-boost-libdir was given.
+if test "${with_boost_libdir+set}" = set; then
+ withval=$with_boost_libdir;
+ if test -d "$withval"
+ then
+ ac_boost_lib_path="$withval"
+ else
+ { { $as_echo "$as_me:$LINENO: error: --with-boost-libdir expected directory name" >&5
+$as_echo "$as_me: error: --with-boost-libdir expected directory name" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+
+else
+ ac_boost_lib_path=""
+
+fi
+
+
+if test "x$want_boost" = "xyes"; then
+ boost_lib_version_req=1.42
+ boost_lib_version_req_shorten=`expr $boost_lib_version_req : '\([0-9]*\.[0-9]*\)'`
+ boost_lib_version_req_major=`expr $boost_lib_version_req : '\([0-9]*\)'`
+ boost_lib_version_req_minor=`expr $boost_lib_version_req : '[0-9]*\.\([0-9]*\)'`
+ boost_lib_version_req_sub_minor=`expr $boost_lib_version_req : '[0-9]*\.[0-9]*\.\([0-9]*\)'`
+ if test "x$boost_lib_version_req_sub_minor" = "x" ; then
+ boost_lib_version_req_sub_minor="0"
+ fi
+ WANT_BOOST_VERSION=`expr $boost_lib_version_req_major \* 100000 \+ $boost_lib_version_req_minor \* 100 \+ $boost_lib_version_req_sub_minor`
+ { $as_echo "$as_me:$LINENO: checking for boostlib >= $boost_lib_version_req" >&5
+$as_echo_n "checking for boostlib >= $boost_lib_version_req... " >&6; }
+ succeeded=no
+
+ libsubdirs="lib"
+ ax_arch=`uname -m`
+ if test $ax_arch = x86_64 -o $ax_arch = ppc64 -o $ax_arch = s390x -o $ax_arch = sparc64; then
+ libsubdirs="lib lib64"
+ fi
+
+
+ std_paths="/usr /usr/local /opt /opt/local"
+
+ if test "$ac_boost_path" != ""; then
+ BOOST_CPPFLAGS="-I$ac_boost_path/include"
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+ #include <boost/version.hpp>
+
+int
+main ()
+{
+
+ #if BOOST_VERSION >= $WANT_BOOST_VERSION
+ // Everything is okay
+ #else
+ # error Boost version is too old
+ #endif
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+
+ succeeded=yes
+
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ elif test "$cross_compiling" != yes; then
+ _version=0
+
+ PATH_LIST="`echo $CPLUS_INCLUDE_PATH:$C_INCLUDE_PATH | sed 's/:/ /g' | sed 's/\/include\/* */ /g'` $std_paths"
+ for ac_boost_path_tmp in $PATH_LIST; do
+ if test -r "$ac_boost_path_tmp/include/boost/version.hpp"; then
+ BOOST_CPPFLAGS="-I$ac_boost_path_tmp/include"
+
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+ #include <boost/version.hpp>
+
+int
+main ()
+{
+
+ #if BOOST_VERSION >= $WANT_BOOST_VERSION
+ // Everything is okay
+ #else
+ # error Boost version is too old
+ #endif
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+
+ succeeded=yes
+
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ if test "x$succeeded" = "xyes"; then
+ ac_boost_path="$ac_boost_path_tmp"
+ break
+ fi
+ fi
+ done
+
+ fi
+
+ if test "x$succeeded" = "xyes"; then
+
+ BOOST_INC_PATH=`echo "$BOOST_CPPFLAGS" | sed 's/^-I//g'`
+
+ # Now, get the version!
+ V=`cat "$ac_boost_path/include/boost/version.hpp" | grep BOOST_VERSION | grep '#define' | grep -v HPP | sed 's/.*BOOST_VERSION//g'`
+ MAJ_V=`expr $V / 100000`
+ MIN_V=`expr $V / 100 % 1000`
+ PATCH_V=`expr $V % 100`
+
+ # Check for libraries that match the version
+ # first, check relative to the include path
+ if test "$ac_boost_lib_path" != ""; then
+ BOOST_LDFLAGS="-L$ac_boost_lib_path"
+ else
+
+ found_lib="no"
+
+ for libsubdir in $libsubdirs; do
+ if ls "$ac_boost_path/$libsubdir/libboost_"*$MAJ_V.$MIN_V.$PATCH_V >/dev/null 2>&1; then
+ BOOST_LDFLAGS="-L$ac_boost_path/$libsubdir"
+ found_lib="yes"
+ break
+ fi
+ done
+
+
+ # Now search the library path for a matching version
+ if test "x$found_lib" != "xyes"; then
+ LIB_PATH_LIST="`echo $LIBRARY_PATH:$LPATH | sed 's/:/ /g' | sed 's/\/lib\(64\)*\/* */ /g'` $std_paths"
+ for lib_path in $LIB_PATH_LIST; do
+ for libsubdir in $libsubdirs; do
+ if ls "$lib_path/$libsubdir/libboost_"*$MAJ_V.$MIN_V.$PATCH_V >/dev/null 2>&1; then
+ BOOST_LDFLAGS="-L$lib_path/$libsubdir"
+ found_lib="yes"
+ break
+ fi
+ done
+ if test "x$found_lib" = "xyes"; then break; fi
+ done
+ fi
+ fi
+
+ break
+ fi
+
+
+ #AC_LANG_POP([C++])
+
+
+ if test "$succeeded" != "yes" ; then
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ # execute ACTION-IF-NOT-FOUND (if present):
+ :
+ else
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ if test "$BOOST_LDFLAGS" = ""; then
+ { $as_echo "$as_me:$LINENO: WARNING: Could not find compiled Boost libraries, use --with-boost-libdir to force detection" >&5
+$as_echo "$as_me: WARNING: Could not find compiled Boost libraries, use --with-boost-libdir to force detection" >&2;}
+ BOOST_LDFLAGS="-L$ac_boost_path"
+ fi
+
+
+
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST /**/
+_ACEOF
+
+ # execute ACTION-IF-FOUND (if present):
+ :
+ fi
+
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ LDFLAGS="$LDFLAGS_SAVED"
+fi
+
+
+
+
+ LIB_NAME=system
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr a-z A-Z`"
+
+
+
+# Check whether --with-boost-system was given.
+if test "${with_boost_system+set}" = set; then
+ withval=$with_boost_system;
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+
+else
+ want_lib="yes";ax_boost_lib=""
+
+fi
+
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/system.hpp"
+ if test "x"boost/system/error_code.hpp != "x"; then
+ HDR_INCLUDE="boost/system/error_code.hpp"
+ fi
+
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$HDR_INCLUDE>
+int
+main ()
+{
+boost::system::system_category
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ lib_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lib_compile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_system* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ as_ac_Lib=`$as_echo "ac_cv_lib_$lib_cand''__init" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for _init in -l$lib_cand" >&5
+$as_echo_n "checking for _init in -l$lib_cand... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-l$lib_cand $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _init ();
+int
+main ()
+{
+return _init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_Lib=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Lib=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ lib_link=yes
+else
+ lib_link=no
+fi
+
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the boost::system library is available" >&5
+$as_echo_n "checking whether the boost::system library is available... " >&6; }
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST_SYSTEM /**/
+_ACEOF
+
+ BOOST_SYSTEM_LIB="-l$LIB_FINAL "
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ fi
+
+
+
+
+
+ LIB_NAME=thread
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr a-z A-Z`"
+
+
+
+# Check whether --with-boost-thread was given.
+if test "${with_boost_thread+set}" = set; then
+ withval=$with_boost_thread;
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+
+else
+ want_lib="yes";ax_boost_lib=""
+
+fi
+
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/thread.hpp"
+ if test "x" != "x"; then
+ HDR_INCLUDE=""
+ fi
+
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$HDR_INCLUDE>
+int
+main ()
+{
+boost::thread_group thrds;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ lib_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lib_compile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_thread* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ as_ac_Lib=`$as_echo "ac_cv_lib_$lib_cand''__init" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for _init in -l$lib_cand" >&5
+$as_echo_n "checking for _init in -l$lib_cand... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-l$lib_cand $BOOST_SYSTEM_LIB $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _init ();
+int
+main ()
+{
+return _init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_Lib=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Lib=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ lib_link=yes
+else
+ lib_link=no
+fi
+
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the boost::thread library is available" >&5
+$as_echo_n "checking whether the boost::thread library is available... " >&6; }
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST_THREAD /**/
+_ACEOF
+
+ BOOST_THREAD_LIB="-l$LIB_FINAL $BOOST_SYSTEM_LIB"
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ fi
+
+
+
+
+
+ LIB_NAME=regex
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr a-z A-Z`"
+
+
+
+# Check whether --with-boost-regex was given.
+if test "${with_boost_regex+set}" = set; then
+ withval=$with_boost_regex;
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+
+else
+ want_lib="yes";ax_boost_lib=""
+
+fi
+
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/regex.hpp"
+ if test "x" != "x"; then
+ HDR_INCLUDE=""
+ fi
+
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$HDR_INCLUDE>
+int
+main ()
+{
+boost::regex r();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ lib_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lib_compile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_regex* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ as_ac_Lib=`$as_echo "ac_cv_lib_$lib_cand''__init" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for _init in -l$lib_cand" >&5
+$as_echo_n "checking for _init in -l$lib_cand... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-l$lib_cand $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _init ();
+int
+main ()
+{
+return _init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_Lib=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Lib=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ lib_link=yes
+else
+ lib_link=no
+fi
+
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the boost::regex library is available" >&5
+$as_echo_n "checking whether the boost::regex library is available... " >&6; }
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST_REGEX /**/
+_ACEOF
+
+ BOOST_REGEX_LIB="-l$LIB_FINAL "
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ fi
+
+
+
+
+
+ LIB_NAME=filesystem
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr a-z A-Z`"
+
+
+
+# Check whether --with-boost-filesystem was given.
+if test "${with_boost_filesystem+set}" = set; then
+ withval=$with_boost_filesystem;
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+
+else
+ want_lib="yes";ax_boost_lib=""
+
+fi
+
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/filesystem.hpp"
+ if test "x" != "x"; then
+ HDR_INCLUDE=""
+ fi
+
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$HDR_INCLUDE>
+int
+main ()
+{
+boost::filesystem::path my_path("foo/bar/data.txt");
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ lib_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lib_compile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_filesystem* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ as_ac_Lib=`$as_echo "ac_cv_lib_$lib_cand''__init" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for _init in -l$lib_cand" >&5
+$as_echo_n "checking for _init in -l$lib_cand... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-l$lib_cand $BOOST_SYSTEM_LIB $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _init ();
+int
+main ()
+{
+return _init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_Lib=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Lib=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ lib_link=yes
+else
+ lib_link=no
+fi
+
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the boost::filesystem library is available" >&5
+$as_echo_n "checking whether the boost::filesystem library is available... " >&6; }
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST_FILESYSTEM /**/
+_ACEOF
+
+ BOOST_FILESYSTEM_LIB="-l$LIB_FINAL $BOOST_SYSTEM_LIB"
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ fi
+
+
+
+
+
+ LIB_NAME=program_options
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr a-z A-Z`"
+
+
+
+# Check whether --with-boost-program-options was given.
+if test "${with_boost_program_options+set}" = set; then
+ withval=$with_boost_program_options;
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+
+else
+ want_lib="yes";ax_boost_lib=""
+
+fi
+
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/program_options.hpp"
+ if test "x" != "x"; then
+ HDR_INCLUDE=""
+ fi
+
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$HDR_INCLUDE>
+int
+main ()
+{
+boost::program_options::options_description po;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ lib_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lib_compile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_program_options* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ as_ac_Lib=`$as_echo "ac_cv_lib_$lib_cand''__init" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for _init in -l$lib_cand" >&5
+$as_echo_n "checking for _init in -l$lib_cand... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-l$lib_cand $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _init ();
+int
+main ()
+{
+return _init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_Lib=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Lib=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ lib_link=yes
+else
+ lib_link=no
+fi
+
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the boost::program_options library is available" >&5
+$as_echo_n "checking whether the boost::program_options library is available... " >&6; }
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST_PROGRAM_OPTIONS /**/
+_ACEOF
+
+ BOOST_PROGRAM_OPTIONS_LIB="-l$LIB_FINAL "
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ fi
+
+
+
+
+
+ LIB_NAME=iostreams
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr a-z A-Z`"
+
+
+
+# Check whether --with-boost-iostreams was given.
+if test "${with_boost_iostreams+set}" = set; then
+ withval=$with_boost_iostreams;
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+
+else
+ want_lib="yes";ax_boost_lib=""
+
+fi
+
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/iostreams.hpp"
+ if test "x"boost/iostreams/filter/zlib.hpp != "x"; then
+ HDR_INCLUDE="boost/iostreams/filter/zlib.hpp"
+ fi
+
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$HDR_INCLUDE>
+int
+main ()
+{
+boost::iostreams::zlib_decompressor();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ lib_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lib_compile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_iostreams* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ as_ac_Lib=`$as_echo "ac_cv_lib_$lib_cand''__init" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for _init in -l$lib_cand" >&5
+$as_echo_n "checking for _init in -l$lib_cand... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-l$lib_cand -lz $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _init ();
+int
+main ()
+{
+return _init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_Lib=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Lib=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ lib_link=yes
+else
+ lib_link=no
+fi
+
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the boost::iostreams library is available" >&5
+$as_echo_n "checking whether the boost::iostreams library is available... " >&6; }
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST_IOSTREAMS /**/
+_ACEOF
+
+ BOOST_IOSTREAMS_LIB="-l$LIB_FINAL -lz"
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ fi
+
+
+
+
+
+ LIB_NAME=serialization
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr a-z A-Z`"
+
+
+
+# Check whether --with-boost-serialization was given.
+if test "${with_boost_serialization+set}" = set; then
+ withval=$with_boost_serialization;
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+
+else
+ want_lib="yes";ax_boost_lib=""
+
+fi
+
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/serialization.hpp"
+ if test "x"boost/archive/binary_oarchive.hpp != "x"; then
+ HDR_INCLUDE="boost/archive/binary_oarchive.hpp"
+ fi
+
+
+
+ ac_ext=cpp
+ac_cpp='$CXXCPP $CPPFLAGS'
+ac_compile='$CXX -c $CXXFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CXX -o conftest$ac_exeext $CXXFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_cxx_compiler_gnu
+
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$HDR_INCLUDE>
+int
+main ()
+{
+boost::archive::binary_oarchive a(std::cout)
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ lib_compile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ lib_compile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/[^\/]*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_serialization* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ as_ac_Lib=`$as_echo "ac_cv_lib_$lib_cand''__init" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for _init in -l$lib_cand" >&5
+$as_echo_n "checking for _init in -l$lib_cand... " >&6; }
+if { as_var=$as_ac_Lib; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-l$lib_cand $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _init ();
+int
+main ()
+{
+return _init ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_cxx_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_Lib=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_Lib=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+ac_res=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_Lib'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ lib_link=yes
+else
+ lib_link=no
+fi
+
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+ { $as_echo "$as_me:$LINENO: checking whether the boost::serialization library is available" >&5
+$as_echo_n "checking whether the boost::serialization library is available... " >&6; }
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_BOOST_SERIALIZATION /**/
+_ACEOF
+
+ BOOST_SERIALIZATION_LIB="-l$LIB_FINAL "
+
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ fi
+ fi
+
+
+
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+
+#OK, now go through and make sure that we have everything that you requested:
+rl_found_all="yes"
+for rl_defn in HAVE_BOOST HAVE_BOOST_THREAD HAVE_BOOST_PROGRAM_OPTIONS \
+ HAVE_BOOST_FILESYSTEM HAVE_BOOST_REGEX HAVE_BOOST_IOSTREAMS \
+ HAVE_BOOST_SERIALIZATION HAVE_GSL; do
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#ifndef $rl_defn
+ #error "Library not found"
+ #endif
+
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ rl_found=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ rl_found=no
+fi
+
+rm -f conftest.err conftest.$ac_ext
+ if test "$rl_found" != "yes"; then
+ rl_lib=`echo $rl_defn | sed 's/^HAVE_//g'`
+ { $as_echo "$as_me:$LINENO: WARNING: Could not find $rl_lib library" >&5
+$as_echo "$as_me: WARNING: Could not find $rl_lib library" >&2;}
+ rl_found_all=no
+ fi
+done
+
+
+if test "$rl_found_all" != "yes"; then
+ { { $as_echo "$as_me:$LINENO: error: Cound not find all prerequisite libraries. Please check the library locations" >&5
+$as_echo "$as_me: error: Cound not find all prerequisite libraries. Please check the library locations" >&2;}
+ { (exit 1); exit 1; }; }
+fi
+
+# Check for the python version, but only if given!
+if test "x" != "x"; then
+ # Extract the first word of "python", so it can be a program name with args.
+set dummy python; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_path_PYTHON+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ case $PYTHON in
+ [\\/]* | ?:[\\/]*)
+ ac_cv_path_PYTHON="$PYTHON" # Let the user override the test with a path.
+ ;;
+ *)
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_path_PYTHON="$as_dir/$ac_word$ac_exec_ext"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+ ;;
+esac
+fi
+PYTHON=$ac_cv_path_PYTHON
+if test -n "$PYTHON"; then
+ { $as_echo "$as_me:$LINENO: result: $PYTHON" >&5
+$as_echo "$PYTHON" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ if test "x$PYTHON" = "x"; then
+ { { $as_echo "$as_me:$LINENO: error: Could not find python executable. Please ensure that Python version is in the PATH" >&5
+$as_echo "$as_me: error: Could not find python executable. Please ensure that Python version is in the PATH" >&2;}
+ { (exit 1); exit 1; }; }
+ else
+
+
+
+
+
+
+ if test -n "$PYTHON"; then
+
+ ax_python_version=""
+
+ { $as_echo "$as_me:$LINENO: checking for python version" >&5
+$as_echo_n "checking for python version... " >&6; }
+
+ python_version=`$PYTHON -V 2>&1 | $GREP "^Python " | $SED -e 's/^.* \([0-9]*\.[0-9]*\.[0-9]*\)/\1/'`
+
+ { $as_echo "$as_me:$LINENO: result: $python_version" >&5
+$as_echo "$python_version" >&6; }
+
+ PYTHON_VERSION=$python_version
+
+
+
+
+
+ # Used to indicate true or false condition
+ ax_compare_version=false
+
+ # Convert the two version strings to be compared into a format that
+ # allows a simple string comparison. The end result is that a version
+ # string of the form 1.12.5-r617 will be converted to the form
+ # 0001001200050617. In other words, each number is zero padded to four
+ # digits, and non digits are removed.
+
+ ax_compare_version_A=`echo "$ax_python_version" | sed -e 's/\([0-9]*\)/Z\1Z/g' \
+ -e 's/Z\([0-9]\)Z/Z0\1Z/g' \
+ -e 's/Z\([0-9][0-9]\)Z/Z0\1Z/g' \
+ -e 's/Z\([0-9][0-9][0-9]\)Z/Z0\1Z/g' \
+ -e 's/[^0-9]//g'`
+
+
+ ax_compare_version_B=`echo "$python_version" | sed -e 's/\([0-9]*\)/Z\1Z/g' \
+ -e 's/Z\([0-9]\)Z/Z0\1Z/g' \
+ -e 's/Z\([0-9][0-9]\)Z/Z0\1Z/g' \
+ -e 's/Z\([0-9][0-9][0-9]\)Z/Z0\1Z/g' \
+ -e 's/[^0-9]//g'`
+
+
+ ax_compare_version=`echo "x$ax_compare_version_A
+x$ax_compare_version_B" | sed 's/^ *//' | sort | sed "s/x${ax_compare_version_A}/true/;s/x${ax_compare_version_B}/false/;1q"`
+
+
+
+ if test "$ax_compare_version" = "true" ; then
+
+ :
+ rl_found_python="yes"
+
+ else
+ :
+ rl_found_python="no"
+
+ fi
+
+
+else
+
+ { $as_echo "$as_me:$LINENO: WARNING: could not find the python interpreter" >&5
+$as_echo "$as_me: WARNING: could not find the python interpreter" >&2;}
+ rl_found_python="no"
+
+fi
+
+
+ if test "x$rl_found_python" != "xyes"; then
+ { { $as_echo "$as_me:$LINENO: error: The Python executable is too old. Please update your python to version " >&5
+$as_echo "$as_me: error: The Python executable is too old. Please update your python to version " >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ fi
+fi
+
+rl_found_mods="yes"
+for rl_mod in ; do
+
+ if test -z $PYTHON;
+ then
+ PYTHON="python"
+ fi
+ PYTHON_NAME=`basename $PYTHON`
+ { $as_echo "$as_me:$LINENO: checking $PYTHON_NAME module: $rl_mod" >&5
+$as_echo_n "checking $PYTHON_NAME module: $rl_mod... " >&6; }
+ $PYTHON -c "import $rl_mod" 2>/dev/null
+ if test $? -eq 0;
+ then
+ { $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+ eval `$as_echo "HAVE_PYMOD_$rl_mod" | $as_tr_cpp`=yes
+ else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+ eval `$as_echo "HAVE_PYMOD_$rl_mod" | $as_tr_cpp`=no
+ #
+ if test -n "1"
+ then
+ { { $as_echo "$as_me:$LINENO: error: failed to find required module $rl_mod" >&5
+$as_echo "$as_me: error: failed to find required module $rl_mod" >&2;}
+ { (exit 1); exit 1; }; }
+ exit 1
+ fi
+ fi
+
+done
+
+# Checks for header files.
+{ $as_echo "$as_me:$LINENO: checking for ANSI C header files" >&5
+$as_echo_n "checking for ANSI C header files... " >&6; }
+if test "${ac_cv_header_stdc+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <stdlib.h>
+#include <stdarg.h>
+#include <string.h>
+#include <float.h>
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_header_stdc=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_header_stdc=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+
+if test $ac_cv_header_stdc = yes; then
+ # SunOS 4.x string.h does not declare mem*, contrary to ANSI.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <string.h>
+
+_ACEOF
+if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
+ $EGREP "memchr" >/dev/null 2>&1; then
+ :
+else
+ ac_cv_header_stdc=no
+fi
+rm -f conftest*
+
+fi
+
+if test $ac_cv_header_stdc = yes; then
+ # ISC 2.0.2 stdlib.h does not declare free, contrary to ANSI.
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <stdlib.h>
+
+_ACEOF
+if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
+ $EGREP "free" >/dev/null 2>&1; then
+ :
+else
+ ac_cv_header_stdc=no
+fi
+rm -f conftest*
+
+fi
+
+if test $ac_cv_header_stdc = yes; then
+ # /bin/cc in Irix-4.0.5 gets non-ANSI ctype macros unless using -ansi.
+ if test "$cross_compiling" = yes; then
+ :
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <ctype.h>
+#include <stdlib.h>
+#if ((' ' & 0x0FF) == 0x020)
+# define ISLOWER(c) ('a' <= (c) && (c) <= 'z')
+# define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c))
+#else
+# define ISLOWER(c) \
+ (('a' <= (c) && (c) <= 'i') \
+ || ('j' <= (c) && (c) <= 'r') \
+ || ('s' <= (c) && (c) <= 'z'))
+# define TOUPPER(c) (ISLOWER(c) ? ((c) | 0x40) : (c))
+#endif
+
+#define XOR(e, f) (((e) && !(f)) || (!(e) && (f)))
+int
+main ()
+{
+ int i;
+ for (i = 0; i < 256; i++)
+ if (XOR (islower (i), ISLOWER (i))
+ || toupper (i) != TOUPPER (i))
+ return 2;
+ return 0;
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ :
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_header_stdc=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_stdc" >&5
+$as_echo "$ac_cv_header_stdc" >&6; }
+if test $ac_cv_header_stdc = yes; then
+
+cat >>confdefs.h <<\_ACEOF
+#define STDC_HEADERS 1
+_ACEOF
+
+fi
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+for ac_header in arpa/inet.h fcntl.h fenv.h float.h inttypes.h limits.h malloc.h netdb.h netinet/in.h stddef.h stdint.h stdlib.h string.h strings.h sys/file.h sys/ioctl.h sys/mount.h sys/param.h sys/socket.h sys/timeb.h syslog.h unistd.h wchar.h
+do
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ { $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+else
+ # Is the header compilable?
+{ $as_echo "$as_me:$LINENO: checking $ac_header usability" >&5
+$as_echo_n "checking $ac_header usability... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_header_compiler=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_compiler=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
+
+# Is the header present?
+{ $as_echo "$as_me:$LINENO: checking $ac_header presence" >&5
+$as_echo_n "checking $ac_header presence... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$ac_header>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ ac_header_preproc=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_preproc=no
+fi
+
+rm -f conftest.err conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
+
+# So? What about this header?
+case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
+ yes:no: )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
+ ac_header_preproc=yes
+ ;;
+ no:yes:* )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+$as_echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+ ( cat <<\_ASBOX
+## ------------------------------------------ ##
+## Report this to software at ritchielab.psu.edu ##
+## ------------------------------------------ ##
+_ASBOX
+ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ eval "$as_ac_Header=\$ac_header_preproc"
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+
+fi
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+
+# Checks for typedefs, structures, and compiler characteristics.
+{ $as_echo "$as_me:$LINENO: checking for stdbool.h that conforms to C99" >&5
+$as_echo_n "checking for stdbool.h that conforms to C99... " >&6; }
+if test "${ac_cv_header_stdbool_h+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+#include <stdbool.h>
+#ifndef bool
+ "error: bool is not defined"
+#endif
+#ifndef false
+ "error: false is not defined"
+#endif
+#if false
+ "error: false is not 0"
+#endif
+#ifndef true
+ "error: true is not defined"
+#endif
+#if true != 1
+ "error: true is not 1"
+#endif
+#ifndef __bool_true_false_are_defined
+ "error: __bool_true_false_are_defined is not defined"
+#endif
+
+ struct s { _Bool s: 1; _Bool t; } s;
+
+ char a[true == 1 ? 1 : -1];
+ char b[false == 0 ? 1 : -1];
+ char c[__bool_true_false_are_defined == 1 ? 1 : -1];
+ char d[(bool) 0.5 == true ? 1 : -1];
+ bool e = &s;
+ char f[(_Bool) 0.0 == false ? 1 : -1];
+ char g[true];
+ char h[sizeof (_Bool)];
+ char i[sizeof s.t];
+ enum { j = false, k = true, l = false * true, m = true * 256 };
+ /* The following fails for
+ HP aC++/ANSI C B3910B A.05.55 [Dec 04 2003]. */
+ _Bool n[m];
+ char o[sizeof n == m * sizeof n[0] ? 1 : -1];
+ char p[-1 - (_Bool) 0 < 0 && -1 - (bool) 0 < 0 ? 1 : -1];
+# if defined __xlc__ || defined __GNUC__
+ /* Catch a bug in IBM AIX xlc compiler version 6.0.0.0
+ reported by James Lemley on 2005-10-05; see
+ http://lists.gnu.org/archive/html/bug-coreutils/2005-10/msg00086.html
+ This test is not quite right, since xlc is allowed to
+ reject this program, as the initializer for xlcbug is
+ not one of the forms that C requires support for.
+ However, doing the test right would require a runtime
+ test, and that would make cross-compilation harder.
+ Let us hope that IBM fixes the xlc bug, and also adds
+ support for this kind of constant expression. In the
+ meantime, this test will reject xlc, which is OK, since
+ our stdbool.h substitute should suffice. We also test
+ this with GCC, where it should work, to detect more
+ quickly whether someone messes up the test in the
+ future. */
+ char digs[] = "0123456789";
+ int xlcbug = 1 / (&(digs + 5)[-2 + (bool) 1] == &digs[4] ? 1 : -1);
+# endif
+ /* Catch a bug in an HP-UX C compiler. See
+ http://gcc.gnu.org/ml/gcc-patches/2003-12/msg02303.html
+ http://lists.gnu.org/archive/html/bug-coreutils/2005-11/msg00161.html
+ */
+ _Bool q = true;
+ _Bool *pq = &q;
+
+int
+main ()
+{
+
+ *pq |= q;
+ *pq |= ! q;
+ /* Refer to every declared value, to avoid compiler optimizations. */
+ return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l
+ + !m + !n + !o + !p + !q + !pq);
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_header_stdbool_h=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_header_stdbool_h=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_stdbool_h" >&5
+$as_echo "$ac_cv_header_stdbool_h" >&6; }
+{ $as_echo "$as_me:$LINENO: checking for _Bool" >&5
+$as_echo_n "checking for _Bool... " >&6; }
+if test "${ac_cv_type__Bool+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_type__Bool=no
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof (_Bool))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((_Bool)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type__Bool=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type__Bool" >&5
+$as_echo "$ac_cv_type__Bool" >&6; }
+if test "x$ac_cv_type__Bool" = x""yes; then
+
+cat >>confdefs.h <<_ACEOF
+#define HAVE__BOOL 1
+_ACEOF
+
+
+fi
+
+if test $ac_cv_header_stdbool_h = yes; then
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_STDBOOL_H 1
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for an ANSI C-conforming const" >&5
+$as_echo_n "checking for an ANSI C-conforming const... " >&6; }
+if test "${ac_cv_c_const+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+/* FIXME: Include the comments suggested by Paul. */
+#ifndef __cplusplus
+ /* Ultrix mips cc rejects this. */
+ typedef int charset[2];
+ const charset cs;
+ /* SunOS 4.1.1 cc rejects this. */
+ char const *const *pcpcc;
+ char **ppc;
+ /* NEC SVR4.0.2 mips cc rejects this. */
+ struct point {int x, y;};
+ static struct point const zero = {0,0};
+ /* AIX XL C 1.02.0.0 rejects this.
+ It does not let you subtract one const X* pointer from another in
+ an arm of an if-expression whose if-part is not a constant
+ expression */
+ const char *g = "string";
+ pcpcc = &g + (g ? g-g : 0);
+ /* HPUX 7.0 cc rejects these. */
+ ++pcpcc;
+ ppc = (char**) pcpcc;
+ pcpcc = (char const *const *) ppc;
+ { /* SCO 3.2v4 cc rejects this. */
+ char *t;
+ char const *s = 0 ? (char *) 0 : (char const *) 0;
+
+ *t++ = 0;
+ if (s) return 0;
+ }
+ { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */
+ int x[] = {25, 17};
+ const int *foo = &x[0];
+ ++foo;
+ }
+ { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */
+ typedef const int *iptr;
+ iptr p = 0;
+ ++p;
+ }
+ { /* AIX XL C 1.02.0.0 rejects this saying
+ "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */
+ struct s { int j; const int *ap[3]; };
+ struct s *b; b->j = 5;
+ }
+ { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */
+ const int foo = 10;
+ if (!foo) return 0;
+ }
+ return !cs[0] && !zero.x;
+#endif
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_c_const=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_c_const=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_const" >&5
+$as_echo "$ac_cv_c_const" >&6; }
+if test $ac_cv_c_const = no; then
+
+cat >>confdefs.h <<\_ACEOF
+#define const /**/
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for inline" >&5
+$as_echo_n "checking for inline... " >&6; }
+if test "${ac_cv_c_inline+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_c_inline=no
+for ac_kw in inline __inline__ __inline; do
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#ifndef __cplusplus
+typedef int foo_t;
+static $ac_kw foo_t static_foo () {return 0; }
+$ac_kw foo_t foo () {return 0; }
+#endif
+
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_c_inline=$ac_kw
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ test "$ac_cv_c_inline" != no && break
+done
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_inline" >&5
+$as_echo "$ac_cv_c_inline" >&6; }
+
+
+case $ac_cv_c_inline in
+ inline | yes) ;;
+ *)
+ case $ac_cv_c_inline in
+ no) ac_val=;;
+ *) ac_val=$ac_cv_c_inline;;
+ esac
+ cat >>confdefs.h <<_ACEOF
+#ifndef __cplusplus
+#define inline $ac_val
+#endif
+_ACEOF
+ ;;
+esac
+
+
+if test "$ac_cv_c_inline" != no ; then
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_INLINE 1
+_ACEOF
+
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for mode_t" >&5
+$as_echo_n "checking for mode_t... " >&6; }
+if test "${ac_cv_type_mode_t+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_type_mode_t=no
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof (mode_t))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((mode_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_mode_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_mode_t" >&5
+$as_echo "$ac_cv_type_mode_t" >&6; }
+if test "x$ac_cv_type_mode_t" = x""yes; then
+ :
+else
+
+cat >>confdefs.h <<_ACEOF
+#define mode_t int
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for off_t" >&5
+$as_echo_n "checking for off_t... " >&6; }
+if test "${ac_cv_type_off_t+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_type_off_t=no
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof (off_t))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((off_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_off_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_off_t" >&5
+$as_echo "$ac_cv_type_off_t" >&6; }
+if test "x$ac_cv_type_off_t" = x""yes; then
+ :
+else
+
+cat >>confdefs.h <<_ACEOF
+#define off_t long int
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for pid_t" >&5
+$as_echo_n "checking for pid_t... " >&6; }
+if test "${ac_cv_type_pid_t+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_type_pid_t=no
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof (pid_t))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((pid_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_pid_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_pid_t" >&5
+$as_echo "$ac_cv_type_pid_t" >&6; }
+if test "x$ac_cv_type_pid_t" = x""yes; then
+ :
+else
+
+cat >>confdefs.h <<_ACEOF
+#define pid_t int
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for size_t" >&5
+$as_echo_n "checking for size_t... " >&6; }
+if test "${ac_cv_type_size_t+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_type_size_t=no
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof (size_t))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((size_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_size_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_size_t" >&5
+$as_echo "$ac_cv_type_size_t" >&6; }
+if test "x$ac_cv_type_size_t" = x""yes; then
+ :
+else
+
+cat >>confdefs.h <<_ACEOF
+#define size_t unsigned int
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking whether time.h and sys/time.h may both be included" >&5
+$as_echo_n "checking whether time.h and sys/time.h may both be included... " >&6; }
+if test "${ac_cv_header_time+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <sys/types.h>
+#include <sys/time.h>
+#include <time.h>
+
+int
+main ()
+{
+if ((struct tm *) 0)
+return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_header_time=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_header_time=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_header_time" >&5
+$as_echo "$ac_cv_header_time" >&6; }
+if test $ac_cv_header_time = yes; then
+
+cat >>confdefs.h <<\_ACEOF
+#define TIME_WITH_SYS_TIME 1
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking whether struct tm is in sys/time.h or time.h" >&5
+$as_echo_n "checking whether struct tm is in sys/time.h or time.h... " >&6; }
+if test "${ac_cv_struct_tm+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <sys/types.h>
+#include <time.h>
+
+int
+main ()
+{
+struct tm tm;
+ int *p = &tm.tm_sec;
+ return !p;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_struct_tm=time.h
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_struct_tm=sys/time.h
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_struct_tm" >&5
+$as_echo "$ac_cv_struct_tm" >&6; }
+if test $ac_cv_struct_tm = sys/time.h; then
+
+cat >>confdefs.h <<\_ACEOF
+#define TM_IN_SYS_TIME 1
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for working volatile" >&5
+$as_echo_n "checking for working volatile... " >&6; }
+if test "${ac_cv_c_volatile+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+volatile int x;
+int * volatile y = (int *) 0;
+return !x && !y;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_c_volatile=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_c_volatile=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_c_volatile" >&5
+$as_echo "$ac_cv_c_volatile" >&6; }
+if test $ac_cv_c_volatile = no; then
+
+cat >>confdefs.h <<\_ACEOF
+#define volatile /**/
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for uid_t in sys/types.h" >&5
+$as_echo_n "checking for uid_t in sys/types.h... " >&6; }
+if test "${ac_cv_type_uid_t+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <sys/types.h>
+
+_ACEOF
+if (eval "$ac_cpp conftest.$ac_ext") 2>&5 |
+ $EGREP "uid_t" >/dev/null 2>&1; then
+ ac_cv_type_uid_t=yes
+else
+ ac_cv_type_uid_t=no
+fi
+rm -f conftest*
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_uid_t" >&5
+$as_echo "$ac_cv_type_uid_t" >&6; }
+if test $ac_cv_type_uid_t = no; then
+
+cat >>confdefs.h <<\_ACEOF
+#define uid_t int
+_ACEOF
+
+
+cat >>confdefs.h <<\_ACEOF
+#define gid_t int
+_ACEOF
+
+fi
+
+{ $as_echo "$as_me:$LINENO: checking for ptrdiff_t" >&5
+$as_echo_n "checking for ptrdiff_t... " >&6; }
+if test "${ac_cv_type_ptrdiff_t+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_type_ptrdiff_t=no
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof (ptrdiff_t))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+if (sizeof ((ptrdiff_t)))
+ return 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ :
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_type_ptrdiff_t=yes
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_type_ptrdiff_t" >&5
+$as_echo "$ac_cv_type_ptrdiff_t" >&6; }
+if test "x$ac_cv_type_ptrdiff_t" = x""yes; then
+
+cat >>confdefs.h <<_ACEOF
+#define HAVE_PTRDIFF_T 1
+_ACEOF
+
+
+fi
+
+
+
+# Checks for library functions.
+{ $as_echo "$as_me:$LINENO: checking for error_at_line" >&5
+$as_echo_n "checking for error_at_line... " >&6; }
+if test "${ac_cv_lib_error_at_line+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <error.h>
+int
+main ()
+{
+error_at_line (0, 0, "", 0, "an error occurred");
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_error_at_line=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_error_at_line=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_error_at_line" >&5
+$as_echo "$ac_cv_lib_error_at_line" >&6; }
+if test $ac_cv_lib_error_at_line = no; then
+ case " $LIBOBJS " in
+ *" error.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS error.$ac_objext"
+ ;;
+esac
+
+fi
+
+
+for ac_header in stdlib.h
+do
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ { $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+else
+ # Is the header compilable?
+{ $as_echo "$as_me:$LINENO: checking $ac_header usability" >&5
+$as_echo_n "checking $ac_header usability... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_header_compiler=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_compiler=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
+
+# Is the header present?
+{ $as_echo "$as_me:$LINENO: checking $ac_header presence" >&5
+$as_echo_n "checking $ac_header presence... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$ac_header>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ ac_header_preproc=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_preproc=no
+fi
+
+rm -f conftest.err conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
+
+# So? What about this header?
+case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
+ yes:no: )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
+ ac_header_preproc=yes
+ ;;
+ no:yes:* )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+$as_echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+ ( cat <<\_ASBOX
+## ------------------------------------------ ##
+## Report this to software at ritchielab.psu.edu ##
+## ------------------------------------------ ##
+_ASBOX
+ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ eval "$as_ac_Header=\$ac_header_preproc"
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+
+fi
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+{ $as_echo "$as_me:$LINENO: checking for GNU libc compatible malloc" >&5
+$as_echo_n "checking for GNU libc compatible malloc... " >&6; }
+if test "${ac_cv_func_malloc_0_nonnull+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then
+ ac_cv_func_malloc_0_nonnull=no
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#if defined STDC_HEADERS || defined HAVE_STDLIB_H
+# include <stdlib.h>
+#else
+char *malloc ();
+#endif
+
+int
+main ()
+{
+return ! malloc (0);
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ ac_cv_func_malloc_0_nonnull=yes
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_func_malloc_0_nonnull=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_malloc_0_nonnull" >&5
+$as_echo "$ac_cv_func_malloc_0_nonnull" >&6; }
+if test $ac_cv_func_malloc_0_nonnull = yes; then
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_MALLOC 1
+_ACEOF
+
+else
+ cat >>confdefs.h <<\_ACEOF
+#define HAVE_MALLOC 0
+_ACEOF
+
+ case " $LIBOBJS " in
+ *" malloc.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS malloc.$ac_objext"
+ ;;
+esac
+
+
+cat >>confdefs.h <<\_ACEOF
+#define malloc rpl_malloc
+_ACEOF
+
+fi
+
+
+
+{ $as_echo "$as_me:$LINENO: checking for working memcmp" >&5
+$as_echo_n "checking for working memcmp... " >&6; }
+if test "${ac_cv_func_memcmp_working+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then
+ ac_cv_func_memcmp_working=no
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+
+ /* Some versions of memcmp are not 8-bit clean. */
+ char c0 = '\100', c1 = '\200', c2 = '\201';
+ if (memcmp(&c0, &c2, 1) >= 0 || memcmp(&c1, &c2, 1) >= 0)
+ return 1;
+
+ /* The Next x86 OpenStep bug shows up only when comparing 16 bytes
+ or more and with at least one buffer not starting on a 4-byte boundary.
+ William Lewis provided this test program. */
+ {
+ char foo[21];
+ char bar[21];
+ int i;
+ for (i = 0; i < 4; i++)
+ {
+ char *a = foo + i;
+ char *b = bar + i;
+ strcpy (a, "--------01111111");
+ strcpy (b, "--------10000000");
+ if (memcmp (a, b, 16) >= 0)
+ return 1;
+ }
+ return 0;
+ }
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ ac_cv_func_memcmp_working=yes
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_func_memcmp_working=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_memcmp_working" >&5
+$as_echo "$ac_cv_func_memcmp_working" >&6; }
+test $ac_cv_func_memcmp_working = no && case " $LIBOBJS " in
+ *" memcmp.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS memcmp.$ac_objext"
+ ;;
+esac
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+{ $as_echo "$as_me:$LINENO: checking for working mktime" >&5
+$as_echo_n "checking for working mktime... " >&6; }
+if test "${ac_cv_func_working_mktime+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then
+ ac_cv_func_working_mktime=no
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Test program from Paul Eggert and Tony Leneis. */
+#ifdef TIME_WITH_SYS_TIME
+# include <sys/time.h>
+# include <time.h>
+#else
+# ifdef HAVE_SYS_TIME_H
+# include <sys/time.h>
+# else
+# include <time.h>
+# endif
+#endif
+
+#include <limits.h>
+#include <stdlib.h>
+
+#ifdef HAVE_UNISTD_H
+# include <unistd.h>
+#endif
+
+#ifndef HAVE_ALARM
+# define alarm(X) /* empty */
+#endif
+
+/* Work around redefinition to rpl_putenv by other config tests. */
+#undef putenv
+
+static time_t time_t_max;
+static time_t time_t_min;
+
+/* Values we'll use to set the TZ environment variable. */
+static char *tz_strings[] = {
+ (char *) 0, "TZ=GMT0", "TZ=JST-9",
+ "TZ=EST+3EDT+2,M10.1.0/00:00:00,M2.3.0/00:00:00"
+};
+#define N_STRINGS (sizeof (tz_strings) / sizeof (tz_strings[0]))
+
+/* Return 0 if mktime fails to convert a date in the spring-forward gap.
+ Based on a problem report from Andreas Jaeger. */
+static int
+spring_forward_gap ()
+{
+ /* glibc (up to about 1998-10-07) failed this test. */
+ struct tm tm;
+
+ /* Use the portable POSIX.1 specification "TZ=PST8PDT,M4.1.0,M10.5.0"
+ instead of "TZ=America/Vancouver" in order to detect the bug even
+ on systems that don't support the Olson extension, or don't have the
+ full zoneinfo tables installed. */
+ putenv ("TZ=PST8PDT,M4.1.0,M10.5.0");
+
+ tm.tm_year = 98;
+ tm.tm_mon = 3;
+ tm.tm_mday = 5;
+ tm.tm_hour = 2;
+ tm.tm_min = 0;
+ tm.tm_sec = 0;
+ tm.tm_isdst = -1;
+ return mktime (&tm) != (time_t) -1;
+}
+
+static int
+mktime_test1 (now)
+ time_t now;
+{
+ struct tm *lt;
+ return ! (lt = localtime (&now)) || mktime (lt) == now;
+}
+
+static int
+mktime_test (now)
+ time_t now;
+{
+ return (mktime_test1 (now)
+ && mktime_test1 ((time_t) (time_t_max - now))
+ && mktime_test1 ((time_t) (time_t_min + now)));
+}
+
+static int
+irix_6_4_bug ()
+{
+ /* Based on code from Ariel Faigon. */
+ struct tm tm;
+ tm.tm_year = 96;
+ tm.tm_mon = 3;
+ tm.tm_mday = 0;
+ tm.tm_hour = 0;
+ tm.tm_min = 0;
+ tm.tm_sec = 0;
+ tm.tm_isdst = -1;
+ mktime (&tm);
+ return tm.tm_mon == 2 && tm.tm_mday == 31;
+}
+
+static int
+bigtime_test (j)
+ int j;
+{
+ struct tm tm;
+ time_t now;
+ tm.tm_year = tm.tm_mon = tm.tm_mday = tm.tm_hour = tm.tm_min = tm.tm_sec = j;
+ now = mktime (&tm);
+ if (now != (time_t) -1)
+ {
+ struct tm *lt = localtime (&now);
+ if (! (lt
+ && lt->tm_year == tm.tm_year
+ && lt->tm_mon == tm.tm_mon
+ && lt->tm_mday == tm.tm_mday
+ && lt->tm_hour == tm.tm_hour
+ && lt->tm_min == tm.tm_min
+ && lt->tm_sec == tm.tm_sec
+ && lt->tm_yday == tm.tm_yday
+ && lt->tm_wday == tm.tm_wday
+ && ((lt->tm_isdst < 0 ? -1 : 0 < lt->tm_isdst)
+ == (tm.tm_isdst < 0 ? -1 : 0 < tm.tm_isdst))))
+ return 0;
+ }
+ return 1;
+}
+
+static int
+year_2050_test ()
+{
+ /* The correct answer for 2050-02-01 00:00:00 in Pacific time,
+ ignoring leap seconds. */
+ unsigned long int answer = 2527315200UL;
+
+ struct tm tm;
+ time_t t;
+ tm.tm_year = 2050 - 1900;
+ tm.tm_mon = 2 - 1;
+ tm.tm_mday = 1;
+ tm.tm_hour = tm.tm_min = tm.tm_sec = 0;
+ tm.tm_isdst = -1;
+
+ /* Use the portable POSIX.1 specification "TZ=PST8PDT,M4.1.0,M10.5.0"
+ instead of "TZ=America/Vancouver" in order to detect the bug even
+ on systems that don't support the Olson extension, or don't have the
+ full zoneinfo tables installed. */
+ putenv ("TZ=PST8PDT,M4.1.0,M10.5.0");
+
+ t = mktime (&tm);
+
+ /* Check that the result is either a failure, or close enough
+ to the correct answer that we can assume the discrepancy is
+ due to leap seconds. */
+ return (t == (time_t) -1
+ || (0 < t && answer - 120 <= t && t <= answer + 120));
+}
+
+int
+main ()
+{
+ time_t t, delta;
+ int i, j;
+
+ /* This test makes some buggy mktime implementations loop.
+ Give up after 60 seconds; a mktime slower than that
+ isn't worth using anyway. */
+ alarm (60);
+
+ for (;;)
+ {
+ t = (time_t_max << 1) + 1;
+ if (t <= time_t_max)
+ break;
+ time_t_max = t;
+ }
+ time_t_min = - ((time_t) ~ (time_t) 0 == (time_t) -1) - time_t_max;
+
+ delta = time_t_max / 997; /* a suitable prime number */
+ for (i = 0; i < N_STRINGS; i++)
+ {
+ if (tz_strings[i])
+ putenv (tz_strings[i]);
+
+ for (t = 0; t <= time_t_max - delta; t += delta)
+ if (! mktime_test (t))
+ return 1;
+ if (! (mktime_test ((time_t) 1)
+ && mktime_test ((time_t) (60 * 60))
+ && mktime_test ((time_t) (60 * 60 * 24))))
+ return 1;
+
+ for (j = 1; ; j <<= 1)
+ if (! bigtime_test (j))
+ return 1;
+ else if (INT_MAX / 2 < j)
+ break;
+ if (! bigtime_test (INT_MAX))
+ return 1;
+ }
+ return ! (irix_6_4_bug () && spring_forward_gap () && year_2050_test ());
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ ac_cv_func_working_mktime=yes
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_func_working_mktime=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_working_mktime" >&5
+$as_echo "$ac_cv_func_working_mktime" >&6; }
+if test $ac_cv_func_working_mktime = no; then
+ case " $LIBOBJS " in
+ *" mktime.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS mktime.$ac_objext"
+ ;;
+esac
+
+fi
+
+
+for ac_header in stdlib.h
+do
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ { $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+else
+ # Is the header compilable?
+{ $as_echo "$as_me:$LINENO: checking $ac_header usability" >&5
+$as_echo_n "checking $ac_header usability... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_header_compiler=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_compiler=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
+
+# Is the header present?
+{ $as_echo "$as_me:$LINENO: checking $ac_header presence" >&5
+$as_echo_n "checking $ac_header presence... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$ac_header>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ ac_header_preproc=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_preproc=no
+fi
+
+rm -f conftest.err conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
+
+# So? What about this header?
+case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
+ yes:no: )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
+ ac_header_preproc=yes
+ ;;
+ no:yes:* )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+$as_echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+ ( cat <<\_ASBOX
+## ------------------------------------------ ##
+## Report this to software at ritchielab.psu.edu ##
+## ------------------------------------------ ##
+_ASBOX
+ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ eval "$as_ac_Header=\$ac_header_preproc"
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+
+fi
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+{ $as_echo "$as_me:$LINENO: checking for GNU libc compatible realloc" >&5
+$as_echo_n "checking for GNU libc compatible realloc... " >&6; }
+if test "${ac_cv_func_realloc_0_nonnull+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then
+ ac_cv_func_realloc_0_nonnull=no
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#if defined STDC_HEADERS || defined HAVE_STDLIB_H
+# include <stdlib.h>
+#else
+char *realloc ();
+#endif
+
+int
+main ()
+{
+return ! realloc (0, 0);
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ ac_cv_func_realloc_0_nonnull=yes
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_func_realloc_0_nonnull=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_realloc_0_nonnull" >&5
+$as_echo "$ac_cv_func_realloc_0_nonnull" >&6; }
+if test $ac_cv_func_realloc_0_nonnull = yes; then
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_REALLOC 1
+_ACEOF
+
+else
+ cat >>confdefs.h <<\_ACEOF
+#define HAVE_REALLOC 0
+_ACEOF
+
+ case " $LIBOBJS " in
+ *" realloc.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS realloc.$ac_objext"
+ ;;
+esac
+
+
+cat >>confdefs.h <<\_ACEOF
+#define realloc rpl_realloc
+_ACEOF
+
+fi
+
+
+
+
+
+for ac_header in sys/select.h sys/socket.h
+do
+as_ac_Header=`$as_echo "ac_cv_header_$ac_header" | $as_tr_sh`
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ { $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+else
+ # Is the header compilable?
+{ $as_echo "$as_me:$LINENO: checking $ac_header usability" >&5
+$as_echo_n "checking $ac_header usability... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+#include <$ac_header>
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_header_compiler=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_compiler=no
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_compiler" >&5
+$as_echo "$ac_header_compiler" >&6; }
+
+# Is the header present?
+{ $as_echo "$as_me:$LINENO: checking $ac_header presence" >&5
+$as_echo_n "checking $ac_header presence... " >&6; }
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+#include <$ac_header>
+_ACEOF
+if { (ac_try="$ac_cpp conftest.$ac_ext"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_cpp conftest.$ac_ext") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } >/dev/null && {
+ test -z "$ac_c_preproc_warn_flag$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ }; then
+ ac_header_preproc=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_header_preproc=no
+fi
+
+rm -f conftest.err conftest.$ac_ext
+{ $as_echo "$as_me:$LINENO: result: $ac_header_preproc" >&5
+$as_echo "$ac_header_preproc" >&6; }
+
+# So? What about this header?
+case $ac_header_compiler:$ac_header_preproc:$ac_c_preproc_warn_flag in
+ yes:no: )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&5
+$as_echo "$as_me: WARNING: $ac_header: accepted by the compiler, rejected by the preprocessor!" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the compiler's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the compiler's result" >&2;}
+ ac_header_preproc=yes
+ ;;
+ no:yes:* )
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: present but cannot be compiled" >&5
+$as_echo "$as_me: WARNING: $ac_header: present but cannot be compiled" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: check for missing prerequisite headers?" >&5
+$as_echo "$as_me: WARNING: $ac_header: check for missing prerequisite headers?" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: see the Autoconf documentation" >&5
+$as_echo "$as_me: WARNING: $ac_header: see the Autoconf documentation" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&5
+$as_echo "$as_me: WARNING: $ac_header: section \"Present But Cannot Be Compiled\"" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: proceeding with the preprocessor's result" >&5
+$as_echo "$as_me: WARNING: $ac_header: proceeding with the preprocessor's result" >&2;}
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_header: in the future, the compiler will take precedence" >&5
+$as_echo "$as_me: WARNING: $ac_header: in the future, the compiler will take precedence" >&2;}
+ ( cat <<\_ASBOX
+## ------------------------------------------ ##
+## Report this to software at ritchielab.psu.edu ##
+## ------------------------------------------ ##
+_ASBOX
+ ) | sed "s/^/$as_me: WARNING: /" >&2
+ ;;
+esac
+{ $as_echo "$as_me:$LINENO: checking for $ac_header" >&5
+$as_echo_n "checking for $ac_header... " >&6; }
+if { as_var=$as_ac_Header; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ eval "$as_ac_Header=\$ac_header_preproc"
+fi
+ac_res=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+
+fi
+as_val=`eval 'as_val=${'$as_ac_Header'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_header" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+
+done
+
+{ $as_echo "$as_me:$LINENO: checking types of arguments for select" >&5
+$as_echo_n "checking types of arguments for select... " >&6; }
+if test "${ac_cv_func_select_args+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ for ac_arg234 in 'fd_set *' 'int *' 'void *'; do
+ for ac_arg1 in 'int' 'size_t' 'unsigned long int' 'unsigned int'; do
+ for ac_arg5 in 'struct timeval *' 'const struct timeval *'; do
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+#ifdef HAVE_SYS_SELECT_H
+# include <sys/select.h>
+#endif
+#ifdef HAVE_SYS_SOCKET_H
+# include <sys/socket.h>
+#endif
+
+int
+main ()
+{
+extern int select ($ac_arg1,
+ $ac_arg234, $ac_arg234, $ac_arg234,
+ $ac_arg5);
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext
+if { (ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_compile") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then
+ ac_cv_func_select_args="$ac_arg1,$ac_arg234,$ac_arg5"; break 3
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+
+fi
+
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ done
+ done
+done
+# Provide a safe default value.
+: ${ac_cv_func_select_args='int,int *,struct timeval *'}
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_select_args" >&5
+$as_echo "$ac_cv_func_select_args" >&6; }
+ac_save_IFS=$IFS; IFS=','
+set dummy `echo "$ac_cv_func_select_args" | sed 's/\*/\*/g'`
+IFS=$ac_save_IFS
+shift
+
+cat >>confdefs.h <<_ACEOF
+#define SELECT_TYPE_ARG1 $1
+_ACEOF
+
+
+cat >>confdefs.h <<_ACEOF
+#define SELECT_TYPE_ARG234 ($2)
+_ACEOF
+
+
+cat >>confdefs.h <<_ACEOF
+#define SELECT_TYPE_ARG5 ($3)
+_ACEOF
+
+rm -f conftest*
+
+{ $as_echo "$as_me:$LINENO: checking whether stat accepts an empty string" >&5
+$as_echo_n "checking whether stat accepts an empty string... " >&6; }
+if test "${ac_cv_func_stat_empty_string_bug+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then
+ ac_cv_func_stat_empty_string_bug=yes
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+$ac_includes_default
+int
+main ()
+{
+struct stat sbuf;
+ return stat ("", &sbuf) == 0;
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ ac_cv_func_stat_empty_string_bug=no
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_func_stat_empty_string_bug=yes
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_stat_empty_string_bug" >&5
+$as_echo "$ac_cv_func_stat_empty_string_bug" >&6; }
+if test $ac_cv_func_stat_empty_string_bug = yes; then
+ case " $LIBOBJS " in
+ *" stat.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS stat.$ac_objext"
+ ;;
+esac
+
+
+cat >>confdefs.h <<_ACEOF
+#define HAVE_STAT_EMPTY_STRING_BUG 1
+_ACEOF
+
+fi
+
+
+for ac_func in strftime
+do
+as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
+$as_echo_n "checking for $ac_func... " >&6; }
+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define $ac_func innocuous_$ac_func
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char $ac_func (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef $ac_func
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char $ac_func ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_$ac_func || defined __stub___$ac_func
+choke me
+#endif
+
+int
+main ()
+{
+return $ac_func ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_var=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_var=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+ac_res=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
+_ACEOF
+
+else
+ # strftime is in -lintl on SCO UNIX.
+{ $as_echo "$as_me:$LINENO: checking for strftime in -lintl" >&5
+$as_echo_n "checking for strftime in -lintl... " >&6; }
+if test "${ac_cv_lib_intl_strftime+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lintl $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char strftime ();
+int
+main ()
+{
+return strftime ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_intl_strftime=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_intl_strftime=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_intl_strftime" >&5
+$as_echo "$ac_cv_lib_intl_strftime" >&6; }
+if test "x$ac_cv_lib_intl_strftime" = x""yes; then
+ cat >>confdefs.h <<\_ACEOF
+#define HAVE_STRFTIME 1
+_ACEOF
+
+LIBS="-lintl $LIBS"
+fi
+
+fi
+done
+
+{ $as_echo "$as_me:$LINENO: checking for working strtod" >&5
+$as_echo_n "checking for working strtod... " >&6; }
+if test "${ac_cv_func_strtod+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test "$cross_compiling" = yes; then
+ ac_cv_func_strtod=no
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+$ac_includes_default
+#ifndef strtod
+double strtod ();
+#endif
+int
+main()
+{
+ {
+ /* Some versions of Linux strtod mis-parse strings with leading '+'. */
+ char *string = " +69";
+ char *term;
+ double value;
+ value = strtod (string, &term);
+ if (value != 69 || term != (string + 4))
+ return 1;
+ }
+
+ {
+ /* Under Solaris 2.4, strtod returns the wrong value for the
+ terminating character under some conditions. */
+ char *string = "NaN";
+ char *term;
+ strtod (string, &term);
+ if (term != string && *(term - 1) == 0)
+ return 1;
+ }
+ return 0;
+}
+
+_ACEOF
+rm -f conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && { ac_try='./conftest$ac_exeext'
+ { (case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); }; }; then
+ ac_cv_func_strtod=yes
+else
+ $as_echo "$as_me: program exited with status $ac_status" >&5
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+( exit $ac_status )
+ac_cv_func_strtod=no
+fi
+rm -rf conftest.dSYM
+rm -f core *.core core.conftest.* gmon.out bb.out conftest$ac_exeext conftest.$ac_objext conftest.$ac_ext
+fi
+
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_strtod" >&5
+$as_echo "$ac_cv_func_strtod" >&6; }
+if test $ac_cv_func_strtod = no; then
+ case " $LIBOBJS " in
+ *" strtod.$ac_objext "* ) ;;
+ *) LIBOBJS="$LIBOBJS strtod.$ac_objext"
+ ;;
+esac
+
+{ $as_echo "$as_me:$LINENO: checking for pow" >&5
+$as_echo_n "checking for pow... " >&6; }
+if test "${ac_cv_func_pow+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define pow to an innocuous variant, in case <limits.h> declares pow.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define pow innocuous_pow
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char pow (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef pow
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char pow ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_pow || defined __stub___pow
+choke me
+#endif
+
+int
+main ()
+{
+return pow ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_func_pow=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_func_pow=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func_pow" >&5
+$as_echo "$ac_cv_func_pow" >&6; }
+
+if test $ac_cv_func_pow = no; then
+ { $as_echo "$as_me:$LINENO: checking for pow in -lm" >&5
+$as_echo_n "checking for pow in -lm... " >&6; }
+if test "${ac_cv_lib_m_pow+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ ac_check_lib_save_LIBS=$LIBS
+LIBS="-lm $LIBS"
+cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char pow ();
+int
+main ()
+{
+return pow ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_lib_m_pow=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_lib_m_pow=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+LIBS=$ac_check_lib_save_LIBS
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_lib_m_pow" >&5
+$as_echo "$ac_cv_lib_m_pow" >&6; }
+if test "x$ac_cv_lib_m_pow" = x""yes; then
+ POW_LIB=-lm
+else
+ { $as_echo "$as_me:$LINENO: WARNING: cannot find library containing definition of pow" >&5
+$as_echo "$as_me: WARNING: cannot find library containing definition of pow" >&2;}
+fi
+
+fi
+
+fi
+
+
+for ac_func in vprintf
+do
+as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
+$as_echo_n "checking for $ac_func... " >&6; }
+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define $ac_func innocuous_$ac_func
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char $ac_func (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef $ac_func
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char $ac_func ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_$ac_func || defined __stub___$ac_func
+choke me
+#endif
+
+int
+main ()
+{
+return $ac_func ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_var=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_var=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+ac_res=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
+_ACEOF
+
+{ $as_echo "$as_me:$LINENO: checking for _doprnt" >&5
+$as_echo_n "checking for _doprnt... " >&6; }
+if test "${ac_cv_func__doprnt+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define _doprnt to an innocuous variant, in case <limits.h> declares _doprnt.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define _doprnt innocuous__doprnt
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char _doprnt (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef _doprnt
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char _doprnt ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub__doprnt || defined __stub____doprnt
+choke me
+#endif
+
+int
+main ()
+{
+return _doprnt ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ ac_cv_func__doprnt=yes
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_cv_func__doprnt=no
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:$LINENO: result: $ac_cv_func__doprnt" >&5
+$as_echo "$ac_cv_func__doprnt" >&6; }
+if test "x$ac_cv_func__doprnt" = x""yes; then
+
+cat >>confdefs.h <<\_ACEOF
+#define HAVE_DOPRNT 1
+_ACEOF
+
+fi
+
+fi
+done
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+for ac_func in bzero clock_gettime fdatasync floor ftime ftruncate getcwd gethrtime gettimeofday localtime_r memmove memset mkdir pow select socket sqrt strchr strrchr strerror
+do
+as_ac_var=`$as_echo "ac_cv_func_$ac_func" | $as_tr_sh`
+{ $as_echo "$as_me:$LINENO: checking for $ac_func" >&5
+$as_echo_n "checking for $ac_func... " >&6; }
+if { as_var=$as_ac_var; eval "test \"\${$as_var+set}\" = set"; }; then
+ $as_echo_n "(cached) " >&6
+else
+ cat >conftest.$ac_ext <<_ACEOF
+/* confdefs.h. */
+_ACEOF
+cat confdefs.h >>conftest.$ac_ext
+cat >>conftest.$ac_ext <<_ACEOF
+/* end confdefs.h. */
+/* Define $ac_func to an innocuous variant, in case <limits.h> declares $ac_func.
+ For example, HP-UX 11i <limits.h> declares gettimeofday. */
+#define $ac_func innocuous_$ac_func
+
+/* System header to define __stub macros and hopefully few prototypes,
+ which can conflict with char $ac_func (); below.
+ Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
+ <limits.h> exists even on freestanding compilers. */
+
+#ifdef __STDC__
+# include <limits.h>
+#else
+# include <assert.h>
+#endif
+
+#undef $ac_func
+
+/* Override any GCC internal prototype to avoid an error.
+ Use char because int might match the return type of a GCC
+ builtin and then its argument prototype would still apply. */
+#ifdef __cplusplus
+extern "C"
+#endif
+char $ac_func ();
+/* The GNU C library defines this for functions which it implements
+ to always fail with ENOSYS. Some functions are actually named
+ something starting with __ and the normal name is an alias. */
+#if defined __stub_$ac_func || defined __stub___$ac_func
+choke me
+#endif
+
+int
+main ()
+{
+return $ac_func ();
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.$ac_objext conftest$ac_exeext
+if { (ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:$LINENO: $ac_try_echo\""
+$as_echo "$ac_try_echo") >&5
+ (eval "$ac_link") 2>conftest.er1
+ ac_status=$?
+ grep -v '^ *+' conftest.er1 >conftest.err
+ rm -f conftest.er1
+ cat conftest.err >&5
+ $as_echo "$as_me:$LINENO: \$? = $ac_status" >&5
+ (exit $ac_status); } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest$ac_exeext && {
+ test "$cross_compiling" = yes ||
+ $as_test_x conftest$ac_exeext
+ }; then
+ eval "$as_ac_var=yes"
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ eval "$as_ac_var=no"
+fi
+
+rm -rf conftest.dSYM
+rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+ conftest$ac_exeext conftest.$ac_ext
+fi
+ac_res=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ { $as_echo "$as_me:$LINENO: result: $ac_res" >&5
+$as_echo "$ac_res" >&6; }
+as_val=`eval 'as_val=${'$as_ac_var'}
+ $as_echo "$as_val"'`
+ if test "x$as_val" = x""yes; then
+ cat >>confdefs.h <<_ACEOF
+#define `$as_echo "HAVE_$ac_func" | $as_tr_cpp` 1
+_ACEOF
+
+fi
+done
+
+
+
+
+am__api_version='1.11'
+
+{ $as_echo "$as_me:$LINENO: checking whether build environment is sane" >&5
+$as_echo_n "checking whether build environment is sane... " >&6; }
+# Just in case
+sleep 1
+echo timestamp > conftest.file
+# Reject unsafe characters in $srcdir or the absolute working directory
+# name. Accept space and tab only in the latter.
+am_lf='
+'
+case `pwd` in
+ *[\\\"\#\$\&\'\`$am_lf]*)
+ { { $as_echo "$as_me:$LINENO: error: unsafe absolute working directory name" >&5
+$as_echo "$as_me: error: unsafe absolute working directory name" >&2;}
+ { (exit 1); exit 1; }; };;
+esac
+case $srcdir in
+ *[\\\"\#\$\&\'\`$am_lf\ \ ]*)
+ { { $as_echo "$as_me:$LINENO: error: unsafe srcdir value: \`$srcdir'" >&5
+$as_echo "$as_me: error: unsafe srcdir value: \`$srcdir'" >&2;}
+ { (exit 1); exit 1; }; };;
+esac
+
+# Do `set' in a subshell so we don't clobber the current shell's
+# arguments. Must try -L first in case configure is actually a
+# symlink; some systems play weird games with the mod time of symlinks
+# (eg FreeBSD returns the mod time of the symlink's containing
+# directory).
+if (
+ set X `ls -Lt "$srcdir/configure" conftest.file 2> /dev/null`
+ if test "$*" = "X"; then
+ # -L didn't work.
+ set X `ls -t "$srcdir/configure" conftest.file`
+ fi
+ rm -f conftest.file
+ if test "$*" != "X $srcdir/configure conftest.file" \
+ && test "$*" != "X conftest.file $srcdir/configure"; then
+
+ # If neither matched, then we have a broken ls. This can happen
+ # if, for instance, CONFIG_SHELL is bash and it inherits a
+ # broken ls alias from the environment. This has actually
+ # happened. Such a system could not be considered "sane".
+ { { $as_echo "$as_me:$LINENO: error: ls -t appears to fail. Make sure there is not a broken
+alias in your environment" >&5
+$as_echo "$as_me: error: ls -t appears to fail. Make sure there is not a broken
+alias in your environment" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+
+ test "$2" = conftest.file
+ )
+then
+ # Ok.
+ :
+else
+ { { $as_echo "$as_me:$LINENO: error: newly created file is older than distributed files!
+Check your system clock" >&5
+$as_echo "$as_me: error: newly created file is older than distributed files!
+Check your system clock" >&2;}
+ { (exit 1); exit 1; }; }
+fi
+{ $as_echo "$as_me:$LINENO: result: yes" >&5
+$as_echo "yes" >&6; }
+test "$program_prefix" != NONE &&
+ program_transform_name="s&^&$program_prefix&;$program_transform_name"
+# Use a double $ so make ignores it.
+test "$program_suffix" != NONE &&
+ program_transform_name="s&\$&$program_suffix&;$program_transform_name"
+# Double any \ or $.
+# By default was `s,x,x', remove it if useless.
+ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
+program_transform_name=`$as_echo "$program_transform_name" | sed "$ac_script"`
+
+# expand $ac_aux_dir to an absolute path
+am_aux_dir=`cd $ac_aux_dir && pwd`
+
+if test x"${MISSING+set}" != xset; then
+ case $am_aux_dir in
+ *\ * | *\ *)
+ MISSING="\${SHELL} \"$am_aux_dir/missing\"" ;;
+ *)
+ MISSING="\${SHELL} $am_aux_dir/missing" ;;
+ esac
+fi
+# Use eval to expand $SHELL
+if eval "$MISSING --run true"; then
+ am_missing_run="$MISSING --run "
+else
+ am_missing_run=
+ { $as_echo "$as_me:$LINENO: WARNING: \`missing' script is too old or missing" >&5
+$as_echo "$as_me: WARNING: \`missing' script is too old or missing" >&2;}
+fi
+
+if test x"${install_sh}" != xset; then
+ case $am_aux_dir in
+ *\ * | *\ *)
+ install_sh="\${SHELL} '$am_aux_dir/install-sh'" ;;
+ *)
+ install_sh="\${SHELL} $am_aux_dir/install-sh"
+ esac
+fi
+
+# Installed binaries are usually stripped using `strip' when the user
+# run `make install-strip'. However `strip' might not be the right
+# tool to use in cross-compilation environments, therefore Automake
+# will honor the `STRIP' environment variable to overrule this program.
+if test "$cross_compiling" != no; then
+ if test -n "$ac_tool_prefix"; then
+ # Extract the first word of "${ac_tool_prefix}strip", so it can be a program name with args.
+set dummy ${ac_tool_prefix}strip; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_STRIP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$STRIP"; then
+ ac_cv_prog_STRIP="$STRIP" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_STRIP="${ac_tool_prefix}strip"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+STRIP=$ac_cv_prog_STRIP
+if test -n "$STRIP"; then
+ { $as_echo "$as_me:$LINENO: result: $STRIP" >&5
+$as_echo "$STRIP" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+fi
+if test -z "$ac_cv_prog_STRIP"; then
+ ac_ct_STRIP=$STRIP
+ # Extract the first word of "strip", so it can be a program name with args.
+set dummy strip; ac_word=$2
+{ $as_echo "$as_me:$LINENO: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if test "${ac_cv_prog_ac_ct_STRIP+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_STRIP"; then
+ ac_cv_prog_ac_ct_STRIP="$ac_ct_STRIP" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_STRIP="strip"
+ $as_echo "$as_me:$LINENO: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_STRIP=$ac_cv_prog_ac_ct_STRIP
+if test -n "$ac_ct_STRIP"; then
+ { $as_echo "$as_me:$LINENO: result: $ac_ct_STRIP" >&5
+$as_echo "$ac_ct_STRIP" >&6; }
+else
+ { $as_echo "$as_me:$LINENO: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+ if test "x$ac_ct_STRIP" = x; then
+ STRIP=":"
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:$LINENO: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ STRIP=$ac_ct_STRIP
+ fi
+else
+ STRIP="$ac_cv_prog_STRIP"
+fi
+
+fi
+INSTALL_STRIP_PROGRAM="\$(install_sh) -c -s"
+
+{ $as_echo "$as_me:$LINENO: checking for a thread-safe mkdir -p" >&5
+$as_echo_n "checking for a thread-safe mkdir -p... " >&6; }
+if test -z "$MKDIR_P"; then
+ if test "${ac_cv_path_mkdir+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH$PATH_SEPARATOR/opt/sfw/bin
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_prog in mkdir gmkdir; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ { test -f "$as_dir/$ac_prog$ac_exec_ext" && $as_test_x "$as_dir/$ac_prog$ac_exec_ext"; } || continue
+ case `"$as_dir/$ac_prog$ac_exec_ext" --version 2>&1` in #(
+ 'mkdir (GNU coreutils) '* | \
+ 'mkdir (coreutils) '* | \
+ 'mkdir (fileutils) '4.1*)
+ ac_cv_path_mkdir=$as_dir/$ac_prog$ac_exec_ext
+ break 3;;
+ esac
+ done
+ done
+done
+IFS=$as_save_IFS
+
+fi
+
+ if test "${ac_cv_path_mkdir+set}" = set; then
+ MKDIR_P="$ac_cv_path_mkdir -p"
+ else
+ # As a last resort, use the slow shell script. Don't cache a
+ # value for MKDIR_P within a source directory, because that will
+ # break other packages using the cache if that directory is
+ # removed, or if the value is a relative name.
+ test -d ./--version && rmdir ./--version
+ MKDIR_P="$ac_install_sh -d"
+ fi
+fi
+{ $as_echo "$as_me:$LINENO: result: $MKDIR_P" >&5
+$as_echo "$MKDIR_P" >&6; }
+
+mkdir_p="$MKDIR_P"
+case $mkdir_p in
+ [\\/$]* | ?:[\\/]*) ;;
+ */*) mkdir_p="\$(top_builddir)/$mkdir_p" ;;
+esac
+
+rm -rf .tst 2>/dev/null
+mkdir .tst 2>/dev/null
+if test -d .tst; then
+ am__leading_dot=.
+else
+ am__leading_dot=_
+fi
+rmdir .tst 2>/dev/null
+
+DEPDIR="${am__leading_dot}deps"
+
+ac_config_commands="$ac_config_commands depfiles"
+
+
+am_make=${MAKE-make}
+cat > confinc << 'END'
+am__doit:
+ @echo this is the am__doit target
+.PHONY: am__doit
+END
+# If we don't find an include directive, just comment out the code.
+{ $as_echo "$as_me:$LINENO: checking for style of include used by $am_make" >&5
+$as_echo_n "checking for style of include used by $am_make... " >&6; }
+am__include="#"
+am__quote=
+_am_result=none
+# First try GNU make style include.
+echo "include confinc" > confmf
+# Ignore all kinds of additional output from `make'.
+case `$am_make -s -f confmf 2> /dev/null` in #(
+*the\ am__doit\ target*)
+ am__include=include
+ am__quote=
+ _am_result=GNU
+ ;;
+esac
+# Now try BSD make style include.
+if test "$am__include" = "#"; then
+ echo '.include "confinc"' > confmf
+ case `$am_make -s -f confmf 2> /dev/null` in #(
+ *the\ am__doit\ target*)
+ am__include=.include
+ am__quote="\""
+ _am_result=BSD
+ ;;
+ esac
+fi
+
+
+{ $as_echo "$as_me:$LINENO: result: $_am_result" >&5
+$as_echo "$_am_result" >&6; }
+rm -f confinc confmf
+
+# Check whether --enable-dependency-tracking was given.
+if test "${enable_dependency_tracking+set}" = set; then
+ enableval=$enable_dependency_tracking;
+fi
+
+if test "x$enable_dependency_tracking" != xno; then
+ am_depcomp="$ac_aux_dir/depcomp"
+ AMDEPBACKSLASH='\'
+fi
+ if test "x$enable_dependency_tracking" != xno; then
+ AMDEP_TRUE=
+ AMDEP_FALSE='#'
+else
+ AMDEP_TRUE='#'
+ AMDEP_FALSE=
+fi
+
+
+if test "`cd $srcdir && pwd`" != "`pwd`"; then
+ # Use -I$(srcdir) only when $(srcdir) != ., so that make's output
+ # is not polluted with repeated "-I."
+ am__isrc=' -I$(srcdir)'
+ # test to see if srcdir already configured
+ if test -f $srcdir/config.status; then
+ { { $as_echo "$as_me:$LINENO: error: source directory already configured; run \"make distclean\" there first" >&5
+$as_echo "$as_me: error: source directory already configured; run \"make distclean\" there first" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+fi
+
+# test whether we have cygpath
+if test -z "$CYGPATH_W"; then
+ if (cygpath --version) >/dev/null 2>/dev/null; then
+ CYGPATH_W='cygpath -w'
+ else
+ CYGPATH_W=echo
+ fi
+fi
+
+
+# Define the identity of the package.
+ PACKAGE='plato'
+ VERSION='2.0.0'
+
+
+cat >>confdefs.h <<_ACEOF
+#define PACKAGE "$PACKAGE"
+_ACEOF
+
+
+cat >>confdefs.h <<_ACEOF
+#define VERSION "$VERSION"
+_ACEOF
+
+# Some tools Automake needs.
+
+ACLOCAL=${ACLOCAL-"${am_missing_run}aclocal-${am__api_version}"}
+
+
+AUTOCONF=${AUTOCONF-"${am_missing_run}autoconf"}
+
+
+AUTOMAKE=${AUTOMAKE-"${am_missing_run}automake-${am__api_version}"}
+
+
+AUTOHEADER=${AUTOHEADER-"${am_missing_run}autoheader"}
+
+
+MAKEINFO=${MAKEINFO-"${am_missing_run}makeinfo"}
+
+# We need awk for the "check" target. The system "awk" is bad on
+# some platforms.
+# Always define AMTAR for backward compatibility.
+
+AMTAR=${AMTAR-"${am_missing_run}tar"}
+
+am__tar='${AMTAR} chof - "$$tardir"'; am__untar='${AMTAR} xf -'
+
+
+
+
+depcc="$CC" am_compiler_list=
+
+{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
+$as_echo_n "checking dependency style of $depcc... " >&6; }
+if test "${am_cv_CC_dependencies_compiler_type+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
+ # We make a subdir and do the tests there. Otherwise we can end up
+ # making bogus files that we don't know about and never remove. For
+ # instance it was reported that on HP-UX the gcc test will end up
+ # making a dummy file named `D' -- because `-MD' means `put the output
+ # in D'.
+ mkdir conftest.dir
+ # Copy depcomp to subdir because otherwise we won't find it if we're
+ # using a relative directory.
+ cp "$am_depcomp" conftest.dir
+ cd conftest.dir
+ # We will build objects and dependencies in a subdirectory because
+ # it helps to detect inapplicable dependency modes. For instance
+ # both Tru64's cc and ICC support -MD to output dependencies as a
+ # side effect of compilation, but ICC will put the dependencies in
+ # the current directory while Tru64 will put them in the object
+ # directory.
+ mkdir sub
+
+ am_cv_CC_dependencies_compiler_type=none
+ if test "$am_compiler_list" = ""; then
+ am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
+ fi
+ am__universal=false
+ case " $depcc " in #(
+ *\ -arch\ *\ -arch\ *) am__universal=true ;;
+ esac
+
+ for depmode in $am_compiler_list; do
+ # Setup a source with many dependencies, because some compilers
+ # like to wrap large dependency lists on column 80 (with \), and
+ # we should not choose a depcomp mode which is confused by this.
+ #
+ # We need to recreate these files for each test, as the compiler may
+ # overwrite some of them when testing with obscure command lines.
+ # This happens at least with the AIX C compiler.
+ : > sub/conftest.c
+ for i in 1 2 3 4 5 6; do
+ echo '#include "conftst'$i'.h"' >> sub/conftest.c
+ # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with
+ # Solaris 8's {/usr,}/bin/sh.
+ touch sub/conftst$i.h
+ done
+ echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
+
+ # We check with `-c' and `-o' for the sake of the "dashmstdout"
+ # mode. It turns out that the SunPro C++ compiler does not properly
+ # handle `-M -o', and we need to detect this. Also, some Intel
+ # versions had trouble with output in subdirs
+ am__obj=sub/conftest.${OBJEXT-o}
+ am__minus_obj="-o $am__obj"
+ case $depmode in
+ gcc)
+ # This depmode causes a compiler race in universal mode.
+ test "$am__universal" = false || continue
+ ;;
+ nosideeffect)
+ # after this tag, mechanisms are not by side-effect, so they'll
+ # only be used when explicitly requested
+ if test "x$enable_dependency_tracking" = xyes; then
+ continue
+ else
+ break
+ fi
+ ;;
+ msvisualcpp | msvcmsys)
+ # This compiler won't grok `-c -o', but also, the minuso test has
+ # not run yet. These depmodes are late enough in the game, and
+ # so weak that their functioning should not be impacted.
+ am__obj=conftest.${OBJEXT-o}
+ am__minus_obj=
+ ;;
+ none) break ;;
+ esac
+ if depmode=$depmode \
+ source=sub/conftest.c object=$am__obj \
+ depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
+ $SHELL ./depcomp $depcc -c $am__minus_obj sub/conftest.c \
+ >/dev/null 2>conftest.err &&
+ grep sub/conftst1.h sub/conftest.Po > /dev/null 2>&1 &&
+ grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
+ grep $am__obj sub/conftest.Po > /dev/null 2>&1 &&
+ ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
+ # icc doesn't choke on unknown options, it will just issue warnings
+ # or remarks (even with -Werror). So we grep stderr for any message
+ # that says an option was ignored or not supported.
+ # When given -MP, icc 7.0 and 7.1 complain thusly:
+ # icc: Command line warning: ignoring option '-M'; no argument required
+ # The diagnosis changed in icc 8.0:
+ # icc: Command line remark: option '-MP' not supported
+ if (grep 'ignoring option' conftest.err ||
+ grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else
+ am_cv_CC_dependencies_compiler_type=$depmode
+ break
+ fi
+ fi
+ done
+
+ cd ..
+ rm -rf conftest.dir
+else
+ am_cv_CC_dependencies_compiler_type=none
+fi
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $am_cv_CC_dependencies_compiler_type" >&5
+$as_echo "$am_cv_CC_dependencies_compiler_type" >&6; }
+CCDEPMODE=depmode=$am_cv_CC_dependencies_compiler_type
+
+ if
+ test "x$enable_dependency_tracking" != xno \
+ && test "$am_cv_CC_dependencies_compiler_type" = gcc3; then
+ am__fastdepCC_TRUE=
+ am__fastdepCC_FALSE='#'
+else
+ am__fastdepCC_TRUE='#'
+ am__fastdepCC_FALSE=
+fi
+
+
+depcc="$CXX" am_compiler_list=
+
+{ $as_echo "$as_me:$LINENO: checking dependency style of $depcc" >&5
+$as_echo_n "checking dependency style of $depcc... " >&6; }
+if test "${am_cv_CXX_dependencies_compiler_type+set}" = set; then
+ $as_echo_n "(cached) " >&6
+else
+ if test -z "$AMDEP_TRUE" && test -f "$am_depcomp"; then
+ # We make a subdir and do the tests there. Otherwise we can end up
+ # making bogus files that we don't know about and never remove. For
+ # instance it was reported that on HP-UX the gcc test will end up
+ # making a dummy file named `D' -- because `-MD' means `put the output
+ # in D'.
+ mkdir conftest.dir
+ # Copy depcomp to subdir because otherwise we won't find it if we're
+ # using a relative directory.
+ cp "$am_depcomp" conftest.dir
+ cd conftest.dir
+ # We will build objects and dependencies in a subdirectory because
+ # it helps to detect inapplicable dependency modes. For instance
+ # both Tru64's cc and ICC support -MD to output dependencies as a
+ # side effect of compilation, but ICC will put the dependencies in
+ # the current directory while Tru64 will put them in the object
+ # directory.
+ mkdir sub
+
+ am_cv_CXX_dependencies_compiler_type=none
+ if test "$am_compiler_list" = ""; then
+ am_compiler_list=`sed -n 's/^#*\([a-zA-Z0-9]*\))$/\1/p' < ./depcomp`
+ fi
+ am__universal=false
+ case " $depcc " in #(
+ *\ -arch\ *\ -arch\ *) am__universal=true ;;
+ esac
+
+ for depmode in $am_compiler_list; do
+ # Setup a source with many dependencies, because some compilers
+ # like to wrap large dependency lists on column 80 (with \), and
+ # we should not choose a depcomp mode which is confused by this.
+ #
+ # We need to recreate these files for each test, as the compiler may
+ # overwrite some of them when testing with obscure command lines.
+ # This happens at least with the AIX C compiler.
+ : > sub/conftest.c
+ for i in 1 2 3 4 5 6; do
+ echo '#include "conftst'$i'.h"' >> sub/conftest.c
+ # Using `: > sub/conftst$i.h' creates only sub/conftst1.h with
+ # Solaris 8's {/usr,}/bin/sh.
+ touch sub/conftst$i.h
+ done
+ echo "${am__include} ${am__quote}sub/conftest.Po${am__quote}" > confmf
+
+ # We check with `-c' and `-o' for the sake of the "dashmstdout"
+ # mode. It turns out that the SunPro C++ compiler does not properly
+ # handle `-M -o', and we need to detect this. Also, some Intel
+ # versions had trouble with output in subdirs
+ am__obj=sub/conftest.${OBJEXT-o}
+ am__minus_obj="-o $am__obj"
+ case $depmode in
+ gcc)
+ # This depmode causes a compiler race in universal mode.
+ test "$am__universal" = false || continue
+ ;;
+ nosideeffect)
+ # after this tag, mechanisms are not by side-effect, so they'll
+ # only be used when explicitly requested
+ if test "x$enable_dependency_tracking" = xyes; then
+ continue
+ else
+ break
+ fi
+ ;;
+ msvisualcpp | msvcmsys)
+ # This compiler won't grok `-c -o', but also, the minuso test has
+ # not run yet. These depmodes are late enough in the game, and
+ # so weak that their functioning should not be impacted.
+ am__obj=conftest.${OBJEXT-o}
+ am__minus_obj=
+ ;;
+ none) break ;;
+ esac
+ if depmode=$depmode \
+ source=sub/conftest.c object=$am__obj \
+ depfile=sub/conftest.Po tmpdepfile=sub/conftest.TPo \
+ $SHELL ./depcomp $depcc -c $am__minus_obj sub/conftest.c \
+ >/dev/null 2>conftest.err &&
+ grep sub/conftst1.h sub/conftest.Po > /dev/null 2>&1 &&
+ grep sub/conftst6.h sub/conftest.Po > /dev/null 2>&1 &&
+ grep $am__obj sub/conftest.Po > /dev/null 2>&1 &&
+ ${MAKE-make} -s -f confmf > /dev/null 2>&1; then
+ # icc doesn't choke on unknown options, it will just issue warnings
+ # or remarks (even with -Werror). So we grep stderr for any message
+ # that says an option was ignored or not supported.
+ # When given -MP, icc 7.0 and 7.1 complain thusly:
+ # icc: Command line warning: ignoring option '-M'; no argument required
+ # The diagnosis changed in icc 8.0:
+ # icc: Command line remark: option '-MP' not supported
+ if (grep 'ignoring option' conftest.err ||
+ grep 'not supported' conftest.err) >/dev/null 2>&1; then :; else
+ am_cv_CXX_dependencies_compiler_type=$depmode
+ break
+ fi
+ fi
+ done
+
+ cd ..
+ rm -rf conftest.dir
+else
+ am_cv_CXX_dependencies_compiler_type=none
+fi
+
+fi
+{ $as_echo "$as_me:$LINENO: result: $am_cv_CXX_dependencies_compiler_type" >&5
+$as_echo "$am_cv_CXX_dependencies_compiler_type" >&6; }
+CXXDEPMODE=depmode=$am_cv_CXX_dependencies_compiler_type
+
+ if
+ test "x$enable_dependency_tracking" != xno \
+ && test "$am_cv_CXX_dependencies_compiler_type" = gcc3; then
+ am__fastdepCXX_TRUE=
+ am__fastdepCXX_FALSE='#'
+else
+ am__fastdepCXX_TRUE='#'
+ am__fastdepCXX_FALSE=
+fi
+
+
+
+
+
+ac_config_headers="$ac_config_headers config.h"
+
+
+
+ac_config_files="$ac_config_files Makefile method_lib/Makefile"
+
+cat >confcache <<\_ACEOF
+# This file is a shell script that caches the results of configure
+# tests run on this system so they can be shared between configure
+# scripts and configure runs, see configure's option --config-cache.
+# It is not useful on other systems. If it contains results you don't
+# want to keep, you may remove or edit it.
+#
+# config.status only pays attention to the cache file if you give it
+# the --recheck option to rerun configure.
+#
+# `ac_cv_env_foo' variables (set or unset) will be overridden when
+# loading this file, other *unset* `ac_cv_foo' will be assigned the
+# following values.
+
+_ACEOF
+
+# The following way of writing the cache mishandles newlines in values,
+# but we know of no workaround that is simple, portable, and efficient.
+# So, we kill variables containing newlines.
+# Ultrix sh set writes to stderr and can't be redirected directly,
+# and sets the high bit in the cache file unless we assign to the vars.
+(
+ for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
+ eval ac_val=\$$ac_var
+ case $ac_val in #(
+ *${as_nl}*)
+ case $ac_var in #(
+ *_cv_*) { $as_echo "$as_me:$LINENO: WARNING: cache variable $ac_var contains a newline" >&5
+$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
+ esac
+ case $ac_var in #(
+ _ | IFS | as_nl) ;; #(
+ BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
+ *) $as_unset $ac_var ;;
+ esac ;;
+ esac
+ done
+
+ (set) 2>&1 |
+ case $as_nl`(ac_space=' '; set) 2>&1` in #(
+ *${as_nl}ac_space=\ *)
+ # `set' does not quote correctly, so add quotes (double-quote
+ # substitution turns \\\\ into \\, and sed turns \\ into \).
+ sed -n \
+ "s/'/'\\\\''/g;
+ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
+ ;; #(
+ *)
+ # `set' quotes correctly as required by POSIX, so do not add quotes.
+ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
+ ;;
+ esac |
+ sort
+) |
+ sed '
+ /^ac_cv_env_/b end
+ t clear
+ :clear
+ s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
+ t end
+ s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
+ :end' >>confcache
+if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
+ if test -w "$cache_file"; then
+ test "x$cache_file" != "x/dev/null" &&
+ { $as_echo "$as_me:$LINENO: updating cache $cache_file" >&5
+$as_echo "$as_me: updating cache $cache_file" >&6;}
+ cat confcache >$cache_file
+ else
+ { $as_echo "$as_me:$LINENO: not updating unwritable cache $cache_file" >&5
+$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
+ fi
+fi
+rm -f confcache
+
+test "x$prefix" = xNONE && prefix=$ac_default_prefix
+# Let make expand exec_prefix.
+test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
+
+DEFS=-DHAVE_CONFIG_H
+
+ac_libobjs=
+ac_ltlibobjs=
+for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
+ # 1. Remove the extension, and $U if already installed.
+ ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
+ ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
+ # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
+ # will be set to the directory where LIBOBJS objects are built.
+ ac_libobjs="$ac_libobjs \${LIBOBJDIR}$ac_i\$U.$ac_objext"
+ ac_ltlibobjs="$ac_ltlibobjs \${LIBOBJDIR}$ac_i"'$U.lo'
+done
+LIBOBJS=$ac_libobjs
+
+LTLIBOBJS=$ac_ltlibobjs
+
+
+if test -z "${LOKI_INSTALL_TRUE}" && test -z "${LOKI_INSTALL_FALSE}"; then
+ { { $as_echo "$as_me:$LINENO: error: conditional \"LOKI_INSTALL\" was never defined.
+Usually this means the macro was only invoked conditionally." >&5
+$as_echo "$as_me: error: conditional \"LOKI_INSTALL\" was never defined.
+Usually this means the macro was only invoked conditionally." >&2;}
+ { (exit 1); exit 1; }; }
+fi
+if test -z "${HAVE_MYSQL_TRUE}" && test -z "${HAVE_MYSQL_FALSE}"; then
+ { { $as_echo "$as_me:$LINENO: error: conditional \"HAVE_MYSQL\" was never defined.
+Usually this means the macro was only invoked conditionally." >&5
+$as_echo "$as_me: error: conditional \"HAVE_MYSQL\" was never defined.
+Usually this means the macro was only invoked conditionally." >&2;}
+ { (exit 1); exit 1; }; }
+fi
+if test -z "${AMDEP_TRUE}" && test -z "${AMDEP_FALSE}"; then
+ { { $as_echo "$as_me:$LINENO: error: conditional \"AMDEP\" was never defined.
+Usually this means the macro was only invoked conditionally." >&5
+$as_echo "$as_me: error: conditional \"AMDEP\" was never defined.
+Usually this means the macro was only invoked conditionally." >&2;}
+ { (exit 1); exit 1; }; }
+fi
+if test -z "${am__fastdepCC_TRUE}" && test -z "${am__fastdepCC_FALSE}"; then
+ { { $as_echo "$as_me:$LINENO: error: conditional \"am__fastdepCC\" was never defined.
+Usually this means the macro was only invoked conditionally." >&5
+$as_echo "$as_me: error: conditional \"am__fastdepCC\" was never defined.
+Usually this means the macro was only invoked conditionally." >&2;}
+ { (exit 1); exit 1; }; }
+fi
+if test -z "${am__fastdepCXX_TRUE}" && test -z "${am__fastdepCXX_FALSE}"; then
+ { { $as_echo "$as_me:$LINENO: error: conditional \"am__fastdepCXX\" was never defined.
+Usually this means the macro was only invoked conditionally." >&5
+$as_echo "$as_me: error: conditional \"am__fastdepCXX\" was never defined.
+Usually this means the macro was only invoked conditionally." >&2;}
+ { (exit 1); exit 1; }; }
+fi
+ if test -n "$EXEEXT"; then
+ am__EXEEXT_TRUE=
+ am__EXEEXT_FALSE='#'
+else
+ am__EXEEXT_TRUE='#'
+ am__EXEEXT_FALSE=
+fi
+
+
+: ${CONFIG_STATUS=./config.status}
+ac_write_fail=0
+ac_clean_files_save=$ac_clean_files
+ac_clean_files="$ac_clean_files $CONFIG_STATUS"
+{ $as_echo "$as_me:$LINENO: creating $CONFIG_STATUS" >&5
+$as_echo "$as_me: creating $CONFIG_STATUS" >&6;}
+cat >$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+#! $SHELL
+# Generated by $as_me.
+# Run this file to recreate the current configuration.
+# Compiler output produced by configure, useful for debugging
+# configure, is in config.log if it exists.
+
+debug=false
+ac_cs_recheck=false
+ac_cs_silent=false
+SHELL=\${CONFIG_SHELL-$SHELL}
+_ACEOF
+
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+## --------------------- ##
+## M4sh Initialization. ##
+## --------------------- ##
+
+# Be more Bourne compatible
+DUALCASE=1; export DUALCASE # for MKS sh
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in
+ *posix*) set -o posix ;;
+esac
+
+fi
+
+
+
+
+# PATH needs CR
+# Avoid depending upon Character Ranges.
+as_cr_letters='abcdefghijklmnopqrstuvwxyz'
+as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
+as_cr_Letters=$as_cr_letters$as_cr_LETTERS
+as_cr_digits='0123456789'
+as_cr_alnum=$as_cr_Letters$as_cr_digits
+
+as_nl='
+'
+export as_nl
+# Printing a long string crashes Solaris 7 /usr/bin/printf.
+as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
+as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
+if (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
+ as_echo='printf %s\n'
+ as_echo_n='printf %s'
+else
+ if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
+ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
+ as_echo_n='/usr/ucb/echo -n'
+ else
+ as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
+ as_echo_n_body='eval
+ arg=$1;
+ case $arg in
+ *"$as_nl"*)
+ expr "X$arg" : "X\\(.*\\)$as_nl";
+ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
+ esac;
+ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
+ '
+ export as_echo_n_body
+ as_echo_n='sh -c $as_echo_n_body as_echo'
+ fi
+ export as_echo_body
+ as_echo='sh -c $as_echo_body as_echo'
+fi
+
+# The user is always right.
+if test "${PATH_SEPARATOR+set}" != set; then
+ PATH_SEPARATOR=:
+ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
+ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
+ PATH_SEPARATOR=';'
+ }
+fi
+
+# Support unset when possible.
+if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+ as_unset=unset
+else
+ as_unset=false
+fi
+
+
+# IFS
+# We need space, tab and new line, in precisely that order. Quoting is
+# there to prevent editors from complaining about space-tab.
+# (If _AS_PATH_WALK were called with IFS unset, it would disable word
+# splitting by setting IFS to empty value.)
+IFS=" "" $as_nl"
+
+# Find who we are. Look in the path if we contain no directory separator.
+case $0 in
+ *[\\/]* ) as_myself=$0 ;;
+ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
+done
+IFS=$as_save_IFS
+
+ ;;
+esac
+# We did not find ourselves, most probably we were run as `sh COMMAND'
+# in which case we are not to be found in the path.
+if test "x$as_myself" = x; then
+ as_myself=$0
+fi
+if test ! -f "$as_myself"; then
+ $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
+ { (exit 1); exit 1; }
+fi
+
+# Work around bugs in pre-3.0 UWIN ksh.
+for as_var in ENV MAIL MAILPATH
+do ($as_unset $as_var) >/dev/null 2>&1 && $as_unset $as_var
+done
+PS1='$ '
+PS2='> '
+PS4='+ '
+
+# NLS nuisances.
+LC_ALL=C
+export LC_ALL
+LANGUAGE=C
+export LANGUAGE
+
+# Required to use basename.
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
+else
+ as_expr=false
+fi
+
+if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
+ as_basename=basename
+else
+ as_basename=false
+fi
+
+
+# Name of the executable.
+as_me=`$as_basename -- "$0" ||
+$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
+ X"$0" : 'X\(//\)$' \| \
+ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X/"$0" |
+ sed '/^.*\/\([^/][^/]*\)\/*$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\/\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+
+# CDPATH.
+$as_unset CDPATH
+
+
+
+ as_lineno_1=$LINENO
+ as_lineno_2=$LINENO
+ test "x$as_lineno_1" != "x$as_lineno_2" &&
+ test "x`expr $as_lineno_1 + 1`" = "x$as_lineno_2" || {
+
+ # Create $as_me.lineno as a copy of $as_myself, but with $LINENO
+ # uniformly replaced by the line number. The first 'sed' inserts a
+ # line-number line after each line using $LINENO; the second 'sed'
+ # does the real work. The second script uses 'N' to pair each
+ # line-number line with the line containing $LINENO, and appends
+ # trailing '-' during substitution so that $LINENO is not a special
+ # case at line end.
+ # (Raja R Harinath suggested sed '=', and Paul Eggert wrote the
+ # scripts with optimization help from Paolo Bonzini. Blame Lee
+ # E. McMahon (1931-1989) for sed's syntax. :-)
+ sed -n '
+ p
+ /[$]LINENO/=
+ ' <$as_myself |
+ sed '
+ s/[$]LINENO.*/&-/
+ t lineno
+ b
+ :lineno
+ N
+ :loop
+ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
+ t loop
+ s/-\n.*//
+ ' >$as_me.lineno &&
+ chmod +x "$as_me.lineno" ||
+ { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2
+ { (exit 1); exit 1; }; }
+
+ # Don't try to exec as it changes $[0], causing all sort of problems
+ # (the dirname of $[0] is not the place where we might find the
+ # original and so on. Autoconf is especially sensitive to this).
+ . "./$as_me.lineno"
+ # Exit status is that of the last command.
+ exit
+}
+
+
+if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
+ as_dirname=dirname
+else
+ as_dirname=false
+fi
+
+ECHO_C= ECHO_N= ECHO_T=
+case `echo -n x` in
+-n*)
+ case `echo 'x\c'` in
+ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
+ *) ECHO_C='\c';;
+ esac;;
+*)
+ ECHO_N='-n';;
+esac
+if expr a : '\(a\)' >/dev/null 2>&1 &&
+ test "X`expr 00001 : '.*\(...\)'`" = X001; then
+ as_expr=expr
+else
+ as_expr=false
+fi
+
+rm -f conf$$ conf$$.exe conf$$.file
+if test -d conf$$.dir; then
+ rm -f conf$$.dir/conf$$.file
+else
+ rm -f conf$$.dir
+ mkdir conf$$.dir 2>/dev/null
+fi
+if (echo >conf$$.file) 2>/dev/null; then
+ if ln -s conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s='ln -s'
+ # ... but there are two gotchas:
+ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
+ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
+ # In both cases, we have to default to `cp -p'.
+ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
+ as_ln_s='cp -p'
+ elif ln conf$$.file conf$$ 2>/dev/null; then
+ as_ln_s=ln
+ else
+ as_ln_s='cp -p'
+ fi
+else
+ as_ln_s='cp -p'
+fi
+rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
+rmdir conf$$.dir 2>/dev/null
+
+if mkdir -p . 2>/dev/null; then
+ as_mkdir_p=:
+else
+ test -d ./-p && rmdir ./-p
+ as_mkdir_p=false
+fi
+
+if test -x / >/dev/null 2>&1; then
+ as_test_x='test -x'
+else
+ if ls -dL / >/dev/null 2>&1; then
+ as_ls_L_option=L
+ else
+ as_ls_L_option=
+ fi
+ as_test_x='
+ eval sh -c '\''
+ if test -d "$1"; then
+ test -d "$1/.";
+ else
+ case $1 in
+ -*)set "./$1";;
+ esac;
+ case `ls -ld'$as_ls_L_option' "$1" 2>/dev/null` in
+ ???[sx]*):;;*)false;;esac;fi
+ '\'' sh
+ '
+fi
+as_executable_p=$as_test_x
+
+# Sed expression to map a string onto a valid CPP name.
+as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
+
+# Sed expression to map a string onto a valid variable name.
+as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
+
+
+exec 6>&1
+
+# Save the log message, to keep $[0] and so on meaningful, and to
+# report actual input values of CONFIG_FILES etc. instead of their
+# values after options handling.
+ac_log="
+This file was extended by PLATO $as_me 2.0.0, which was
+generated by GNU Autoconf 2.63. Invocation command line was
+
+ CONFIG_FILES = $CONFIG_FILES
+ CONFIG_HEADERS = $CONFIG_HEADERS
+ CONFIG_LINKS = $CONFIG_LINKS
+ CONFIG_COMMANDS = $CONFIG_COMMANDS
+ $ $0 $@
+
+on `(hostname || uname -n) 2>/dev/null | sed 1q`
+"
+
+_ACEOF
+
+case $ac_config_files in *"
+"*) set x $ac_config_files; shift; ac_config_files=$*;;
+esac
+
+case $ac_config_headers in *"
+"*) set x $ac_config_headers; shift; ac_config_headers=$*;;
+esac
+
+
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+# Files that config.status was made for.
+config_files="$ac_config_files"
+config_headers="$ac_config_headers"
+config_commands="$ac_config_commands"
+
+_ACEOF
+
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+ac_cs_usage="\
+\`$as_me' instantiates files from templates according to the
+current configuration.
+
+Usage: $0 [OPTION]... [FILE]...
+
+ -h, --help print this help, then exit
+ -V, --version print version number and configuration settings, then exit
+ -q, --quiet, --silent
+ do not print progress messages
+ -d, --debug don't remove temporary files
+ --recheck update $as_me by reconfiguring in the same conditions
+ --file=FILE[:TEMPLATE]
+ instantiate the configuration file FILE
+ --header=FILE[:TEMPLATE]
+ instantiate the configuration header FILE
+
+Configuration files:
+$config_files
+
+Configuration headers:
+$config_headers
+
+Configuration commands:
+$config_commands
+
+Report bugs to <bug-autoconf at gnu.org>."
+
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ac_cs_version="\\
+PLATO config.status 2.0.0
+configured by $0, generated by GNU Autoconf 2.63,
+ with options \\"`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`\\"
+
+Copyright (C) 2008 Free Software Foundation, Inc.
+This config.status script is free software; the Free Software Foundation
+gives unlimited permission to copy, distribute and modify it."
+
+ac_pwd='$ac_pwd'
+srcdir='$srcdir'
+INSTALL='$INSTALL'
+MKDIR_P='$MKDIR_P'
+AWK='$AWK'
+test -n "\$AWK" || AWK=awk
+_ACEOF
+
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# The default lists apply if the user does not specify any file.
+ac_need_defaults=:
+while test $# != 0
+do
+ case $1 in
+ --*=*)
+ ac_option=`expr "X$1" : 'X\([^=]*\)='`
+ ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
+ ac_shift=:
+ ;;
+ *)
+ ac_option=$1
+ ac_optarg=$2
+ ac_shift=shift
+ ;;
+ esac
+
+ case $ac_option in
+ # Handling of the options.
+ -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
+ ac_cs_recheck=: ;;
+ --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
+ $as_echo "$ac_cs_version"; exit ;;
+ --debug | --debu | --deb | --de | --d | -d )
+ debug=: ;;
+ --file | --fil | --fi | --f )
+ $ac_shift
+ case $ac_optarg in
+ *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ esac
+ CONFIG_FILES="$CONFIG_FILES '$ac_optarg'"
+ ac_need_defaults=false;;
+ --header | --heade | --head | --hea )
+ $ac_shift
+ case $ac_optarg in
+ *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
+ esac
+ CONFIG_HEADERS="$CONFIG_HEADERS '$ac_optarg'"
+ ac_need_defaults=false;;
+ --he | --h)
+ # Conflict between --help and --header
+ { $as_echo "$as_me: error: ambiguous option: $1
+Try \`$0 --help' for more information." >&2
+ { (exit 1); exit 1; }; };;
+ --help | --hel | -h )
+ $as_echo "$ac_cs_usage"; exit ;;
+ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
+ | -silent | --silent | --silen | --sile | --sil | --si | --s)
+ ac_cs_silent=: ;;
+
+ # This is an error.
+ -*) { $as_echo "$as_me: error: unrecognized option: $1
+Try \`$0 --help' for more information." >&2
+ { (exit 1); exit 1; }; } ;;
+
+ *) ac_config_targets="$ac_config_targets $1"
+ ac_need_defaults=false ;;
+
+ esac
+ shift
+done
+
+ac_configure_extra_args=
+
+if $ac_cs_silent; then
+ exec 6>/dev/null
+ ac_configure_extra_args="$ac_configure_extra_args --silent"
+fi
+
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+if \$ac_cs_recheck; then
+ set X '$SHELL' '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
+ shift
+ \$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6
+ CONFIG_SHELL='$SHELL'
+ export CONFIG_SHELL
+ exec "\$@"
+fi
+
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+exec 5>>config.log
+{
+ echo
+ sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
+## Running $as_me. ##
+_ASBOX
+ $as_echo "$ac_log"
+} >&5
+
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+#
+# INIT-COMMANDS
+#
+
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+sed_quote_subst='$sed_quote_subst'
+double_quote_subst='$double_quote_subst'
+delay_variable_subst='$delay_variable_subst'
+macro_version='`$ECHO "X$macro_version" | $Xsed -e "$delay_single_quote_subst"`'
+macro_revision='`$ECHO "X$macro_revision" | $Xsed -e "$delay_single_quote_subst"`'
+enable_shared='`$ECHO "X$enable_shared" | $Xsed -e "$delay_single_quote_subst"`'
+enable_static='`$ECHO "X$enable_static" | $Xsed -e "$delay_single_quote_subst"`'
+pic_mode='`$ECHO "X$pic_mode" | $Xsed -e "$delay_single_quote_subst"`'
+enable_fast_install='`$ECHO "X$enable_fast_install" | $Xsed -e "$delay_single_quote_subst"`'
+host_alias='`$ECHO "X$host_alias" | $Xsed -e "$delay_single_quote_subst"`'
+host='`$ECHO "X$host" | $Xsed -e "$delay_single_quote_subst"`'
+host_os='`$ECHO "X$host_os" | $Xsed -e "$delay_single_quote_subst"`'
+build_alias='`$ECHO "X$build_alias" | $Xsed -e "$delay_single_quote_subst"`'
+build='`$ECHO "X$build" | $Xsed -e "$delay_single_quote_subst"`'
+build_os='`$ECHO "X$build_os" | $Xsed -e "$delay_single_quote_subst"`'
+SED='`$ECHO "X$SED" | $Xsed -e "$delay_single_quote_subst"`'
+Xsed='`$ECHO "X$Xsed" | $Xsed -e "$delay_single_quote_subst"`'
+GREP='`$ECHO "X$GREP" | $Xsed -e "$delay_single_quote_subst"`'
+EGREP='`$ECHO "X$EGREP" | $Xsed -e "$delay_single_quote_subst"`'
+FGREP='`$ECHO "X$FGREP" | $Xsed -e "$delay_single_quote_subst"`'
+LD='`$ECHO "X$LD" | $Xsed -e "$delay_single_quote_subst"`'
+NM='`$ECHO "X$NM" | $Xsed -e "$delay_single_quote_subst"`'
+LN_S='`$ECHO "X$LN_S" | $Xsed -e "$delay_single_quote_subst"`'
+max_cmd_len='`$ECHO "X$max_cmd_len" | $Xsed -e "$delay_single_quote_subst"`'
+ac_objext='`$ECHO "X$ac_objext" | $Xsed -e "$delay_single_quote_subst"`'
+exeext='`$ECHO "X$exeext" | $Xsed -e "$delay_single_quote_subst"`'
+lt_unset='`$ECHO "X$lt_unset" | $Xsed -e "$delay_single_quote_subst"`'
+lt_SP2NL='`$ECHO "X$lt_SP2NL" | $Xsed -e "$delay_single_quote_subst"`'
+lt_NL2SP='`$ECHO "X$lt_NL2SP" | $Xsed -e "$delay_single_quote_subst"`'
+reload_flag='`$ECHO "X$reload_flag" | $Xsed -e "$delay_single_quote_subst"`'
+reload_cmds='`$ECHO "X$reload_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+OBJDUMP='`$ECHO "X$OBJDUMP" | $Xsed -e "$delay_single_quote_subst"`'
+deplibs_check_method='`$ECHO "X$deplibs_check_method" | $Xsed -e "$delay_single_quote_subst"`'
+file_magic_cmd='`$ECHO "X$file_magic_cmd" | $Xsed -e "$delay_single_quote_subst"`'
+AR='`$ECHO "X$AR" | $Xsed -e "$delay_single_quote_subst"`'
+AR_FLAGS='`$ECHO "X$AR_FLAGS" | $Xsed -e "$delay_single_quote_subst"`'
+STRIP='`$ECHO "X$STRIP" | $Xsed -e "$delay_single_quote_subst"`'
+RANLIB='`$ECHO "X$RANLIB" | $Xsed -e "$delay_single_quote_subst"`'
+old_postinstall_cmds='`$ECHO "X$old_postinstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+old_postuninstall_cmds='`$ECHO "X$old_postuninstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+old_archive_cmds='`$ECHO "X$old_archive_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+CC='`$ECHO "X$CC" | $Xsed -e "$delay_single_quote_subst"`'
+CFLAGS='`$ECHO "X$CFLAGS" | $Xsed -e "$delay_single_quote_subst"`'
+compiler='`$ECHO "X$compiler" | $Xsed -e "$delay_single_quote_subst"`'
+GCC='`$ECHO "X$GCC" | $Xsed -e "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_pipe='`$ECHO "X$lt_cv_sys_global_symbol_pipe" | $Xsed -e "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_cdecl='`$ECHO "X$lt_cv_sys_global_symbol_to_cdecl" | $Xsed -e "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_c_name_address='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address" | $Xsed -e "$delay_single_quote_subst"`'
+lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='`$ECHO "X$lt_cv_sys_global_symbol_to_c_name_address_lib_prefix" | $Xsed -e "$delay_single_quote_subst"`'
+objdir='`$ECHO "X$objdir" | $Xsed -e "$delay_single_quote_subst"`'
+SHELL='`$ECHO "X$SHELL" | $Xsed -e "$delay_single_quote_subst"`'
+ECHO='`$ECHO "X$ECHO" | $Xsed -e "$delay_single_quote_subst"`'
+MAGIC_CMD='`$ECHO "X$MAGIC_CMD" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_no_builtin_flag='`$ECHO "X$lt_prog_compiler_no_builtin_flag" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_wl='`$ECHO "X$lt_prog_compiler_wl" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_pic='`$ECHO "X$lt_prog_compiler_pic" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_static='`$ECHO "X$lt_prog_compiler_static" | $Xsed -e "$delay_single_quote_subst"`'
+lt_cv_prog_compiler_c_o='`$ECHO "X$lt_cv_prog_compiler_c_o" | $Xsed -e "$delay_single_quote_subst"`'
+need_locks='`$ECHO "X$need_locks" | $Xsed -e "$delay_single_quote_subst"`'
+DSYMUTIL='`$ECHO "X$DSYMUTIL" | $Xsed -e "$delay_single_quote_subst"`'
+NMEDIT='`$ECHO "X$NMEDIT" | $Xsed -e "$delay_single_quote_subst"`'
+LIPO='`$ECHO "X$LIPO" | $Xsed -e "$delay_single_quote_subst"`'
+OTOOL='`$ECHO "X$OTOOL" | $Xsed -e "$delay_single_quote_subst"`'
+OTOOL64='`$ECHO "X$OTOOL64" | $Xsed -e "$delay_single_quote_subst"`'
+libext='`$ECHO "X$libext" | $Xsed -e "$delay_single_quote_subst"`'
+shrext_cmds='`$ECHO "X$shrext_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+extract_expsyms_cmds='`$ECHO "X$extract_expsyms_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+archive_cmds_need_lc='`$ECHO "X$archive_cmds_need_lc" | $Xsed -e "$delay_single_quote_subst"`'
+enable_shared_with_static_runtimes='`$ECHO "X$enable_shared_with_static_runtimes" | $Xsed -e "$delay_single_quote_subst"`'
+export_dynamic_flag_spec='`$ECHO "X$export_dynamic_flag_spec" | $Xsed -e "$delay_single_quote_subst"`'
+whole_archive_flag_spec='`$ECHO "X$whole_archive_flag_spec" | $Xsed -e "$delay_single_quote_subst"`'
+compiler_needs_object='`$ECHO "X$compiler_needs_object" | $Xsed -e "$delay_single_quote_subst"`'
+old_archive_from_new_cmds='`$ECHO "X$old_archive_from_new_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+old_archive_from_expsyms_cmds='`$ECHO "X$old_archive_from_expsyms_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+archive_cmds='`$ECHO "X$archive_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+archive_expsym_cmds='`$ECHO "X$archive_expsym_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+module_cmds='`$ECHO "X$module_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+module_expsym_cmds='`$ECHO "X$module_expsym_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+with_gnu_ld='`$ECHO "X$with_gnu_ld" | $Xsed -e "$delay_single_quote_subst"`'
+allow_undefined_flag='`$ECHO "X$allow_undefined_flag" | $Xsed -e "$delay_single_quote_subst"`'
+no_undefined_flag='`$ECHO "X$no_undefined_flag" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_libdir_flag_spec='`$ECHO "X$hardcode_libdir_flag_spec" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_libdir_flag_spec_ld='`$ECHO "X$hardcode_libdir_flag_spec_ld" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_libdir_separator='`$ECHO "X$hardcode_libdir_separator" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_direct='`$ECHO "X$hardcode_direct" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_direct_absolute='`$ECHO "X$hardcode_direct_absolute" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_minus_L='`$ECHO "X$hardcode_minus_L" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_shlibpath_var='`$ECHO "X$hardcode_shlibpath_var" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_automatic='`$ECHO "X$hardcode_automatic" | $Xsed -e "$delay_single_quote_subst"`'
+inherit_rpath='`$ECHO "X$inherit_rpath" | $Xsed -e "$delay_single_quote_subst"`'
+link_all_deplibs='`$ECHO "X$link_all_deplibs" | $Xsed -e "$delay_single_quote_subst"`'
+fix_srcfile_path='`$ECHO "X$fix_srcfile_path" | $Xsed -e "$delay_single_quote_subst"`'
+always_export_symbols='`$ECHO "X$always_export_symbols" | $Xsed -e "$delay_single_quote_subst"`'
+export_symbols_cmds='`$ECHO "X$export_symbols_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+exclude_expsyms='`$ECHO "X$exclude_expsyms" | $Xsed -e "$delay_single_quote_subst"`'
+include_expsyms='`$ECHO "X$include_expsyms" | $Xsed -e "$delay_single_quote_subst"`'
+prelink_cmds='`$ECHO "X$prelink_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+file_list_spec='`$ECHO "X$file_list_spec" | $Xsed -e "$delay_single_quote_subst"`'
+variables_saved_for_relink='`$ECHO "X$variables_saved_for_relink" | $Xsed -e "$delay_single_quote_subst"`'
+need_lib_prefix='`$ECHO "X$need_lib_prefix" | $Xsed -e "$delay_single_quote_subst"`'
+need_version='`$ECHO "X$need_version" | $Xsed -e "$delay_single_quote_subst"`'
+version_type='`$ECHO "X$version_type" | $Xsed -e "$delay_single_quote_subst"`'
+runpath_var='`$ECHO "X$runpath_var" | $Xsed -e "$delay_single_quote_subst"`'
+shlibpath_var='`$ECHO "X$shlibpath_var" | $Xsed -e "$delay_single_quote_subst"`'
+shlibpath_overrides_runpath='`$ECHO "X$shlibpath_overrides_runpath" | $Xsed -e "$delay_single_quote_subst"`'
+libname_spec='`$ECHO "X$libname_spec" | $Xsed -e "$delay_single_quote_subst"`'
+library_names_spec='`$ECHO "X$library_names_spec" | $Xsed -e "$delay_single_quote_subst"`'
+soname_spec='`$ECHO "X$soname_spec" | $Xsed -e "$delay_single_quote_subst"`'
+postinstall_cmds='`$ECHO "X$postinstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+postuninstall_cmds='`$ECHO "X$postuninstall_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+finish_cmds='`$ECHO "X$finish_cmds" | $Xsed -e "$delay_single_quote_subst"`'
+finish_eval='`$ECHO "X$finish_eval" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_into_libs='`$ECHO "X$hardcode_into_libs" | $Xsed -e "$delay_single_quote_subst"`'
+sys_lib_search_path_spec='`$ECHO "X$sys_lib_search_path_spec" | $Xsed -e "$delay_single_quote_subst"`'
+sys_lib_dlsearch_path_spec='`$ECHO "X$sys_lib_dlsearch_path_spec" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_action='`$ECHO "X$hardcode_action" | $Xsed -e "$delay_single_quote_subst"`'
+enable_dlopen='`$ECHO "X$enable_dlopen" | $Xsed -e "$delay_single_quote_subst"`'
+enable_dlopen_self='`$ECHO "X$enable_dlopen_self" | $Xsed -e "$delay_single_quote_subst"`'
+enable_dlopen_self_static='`$ECHO "X$enable_dlopen_self_static" | $Xsed -e "$delay_single_quote_subst"`'
+old_striplib='`$ECHO "X$old_striplib" | $Xsed -e "$delay_single_quote_subst"`'
+striplib='`$ECHO "X$striplib" | $Xsed -e "$delay_single_quote_subst"`'
+compiler_lib_search_dirs='`$ECHO "X$compiler_lib_search_dirs" | $Xsed -e "$delay_single_quote_subst"`'
+predep_objects='`$ECHO "X$predep_objects" | $Xsed -e "$delay_single_quote_subst"`'
+postdep_objects='`$ECHO "X$postdep_objects" | $Xsed -e "$delay_single_quote_subst"`'
+predeps='`$ECHO "X$predeps" | $Xsed -e "$delay_single_quote_subst"`'
+postdeps='`$ECHO "X$postdeps" | $Xsed -e "$delay_single_quote_subst"`'
+compiler_lib_search_path='`$ECHO "X$compiler_lib_search_path" | $Xsed -e "$delay_single_quote_subst"`'
+LD_CXX='`$ECHO "X$LD_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+old_archive_cmds_CXX='`$ECHO "X$old_archive_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+compiler_CXX='`$ECHO "X$compiler_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+GCC_CXX='`$ECHO "X$GCC_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_no_builtin_flag_CXX='`$ECHO "X$lt_prog_compiler_no_builtin_flag_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_wl_CXX='`$ECHO "X$lt_prog_compiler_wl_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_pic_CXX='`$ECHO "X$lt_prog_compiler_pic_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+lt_prog_compiler_static_CXX='`$ECHO "X$lt_prog_compiler_static_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+lt_cv_prog_compiler_c_o_CXX='`$ECHO "X$lt_cv_prog_compiler_c_o_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+archive_cmds_need_lc_CXX='`$ECHO "X$archive_cmds_need_lc_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+enable_shared_with_static_runtimes_CXX='`$ECHO "X$enable_shared_with_static_runtimes_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+export_dynamic_flag_spec_CXX='`$ECHO "X$export_dynamic_flag_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+whole_archive_flag_spec_CXX='`$ECHO "X$whole_archive_flag_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+compiler_needs_object_CXX='`$ECHO "X$compiler_needs_object_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+old_archive_from_new_cmds_CXX='`$ECHO "X$old_archive_from_new_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+old_archive_from_expsyms_cmds_CXX='`$ECHO "X$old_archive_from_expsyms_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+archive_cmds_CXX='`$ECHO "X$archive_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+archive_expsym_cmds_CXX='`$ECHO "X$archive_expsym_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+module_cmds_CXX='`$ECHO "X$module_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+module_expsym_cmds_CXX='`$ECHO "X$module_expsym_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+with_gnu_ld_CXX='`$ECHO "X$with_gnu_ld_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+allow_undefined_flag_CXX='`$ECHO "X$allow_undefined_flag_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+no_undefined_flag_CXX='`$ECHO "X$no_undefined_flag_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_libdir_flag_spec_CXX='`$ECHO "X$hardcode_libdir_flag_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_libdir_flag_spec_ld_CXX='`$ECHO "X$hardcode_libdir_flag_spec_ld_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_libdir_separator_CXX='`$ECHO "X$hardcode_libdir_separator_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_direct_CXX='`$ECHO "X$hardcode_direct_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_direct_absolute_CXX='`$ECHO "X$hardcode_direct_absolute_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_minus_L_CXX='`$ECHO "X$hardcode_minus_L_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_shlibpath_var_CXX='`$ECHO "X$hardcode_shlibpath_var_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_automatic_CXX='`$ECHO "X$hardcode_automatic_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+inherit_rpath_CXX='`$ECHO "X$inherit_rpath_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+link_all_deplibs_CXX='`$ECHO "X$link_all_deplibs_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+fix_srcfile_path_CXX='`$ECHO "X$fix_srcfile_path_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+always_export_symbols_CXX='`$ECHO "X$always_export_symbols_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+export_symbols_cmds_CXX='`$ECHO "X$export_symbols_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+exclude_expsyms_CXX='`$ECHO "X$exclude_expsyms_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+include_expsyms_CXX='`$ECHO "X$include_expsyms_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+prelink_cmds_CXX='`$ECHO "X$prelink_cmds_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+file_list_spec_CXX='`$ECHO "X$file_list_spec_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+hardcode_action_CXX='`$ECHO "X$hardcode_action_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+compiler_lib_search_dirs_CXX='`$ECHO "X$compiler_lib_search_dirs_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+predep_objects_CXX='`$ECHO "X$predep_objects_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+postdep_objects_CXX='`$ECHO "X$postdep_objects_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+predeps_CXX='`$ECHO "X$predeps_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+postdeps_CXX='`$ECHO "X$postdeps_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+compiler_lib_search_path_CXX='`$ECHO "X$compiler_lib_search_path_CXX" | $Xsed -e "$delay_single_quote_subst"`'
+
+LTCC='$LTCC'
+LTCFLAGS='$LTCFLAGS'
+compiler='$compiler_DEFAULT'
+
+# Quote evaled strings.
+for var in SED \
+GREP \
+EGREP \
+FGREP \
+LD \
+NM \
+LN_S \
+lt_SP2NL \
+lt_NL2SP \
+reload_flag \
+OBJDUMP \
+deplibs_check_method \
+file_magic_cmd \
+AR \
+AR_FLAGS \
+STRIP \
+RANLIB \
+CC \
+CFLAGS \
+compiler \
+lt_cv_sys_global_symbol_pipe \
+lt_cv_sys_global_symbol_to_cdecl \
+lt_cv_sys_global_symbol_to_c_name_address \
+lt_cv_sys_global_symbol_to_c_name_address_lib_prefix \
+SHELL \
+ECHO \
+lt_prog_compiler_no_builtin_flag \
+lt_prog_compiler_wl \
+lt_prog_compiler_pic \
+lt_prog_compiler_static \
+lt_cv_prog_compiler_c_o \
+need_locks \
+DSYMUTIL \
+NMEDIT \
+LIPO \
+OTOOL \
+OTOOL64 \
+shrext_cmds \
+export_dynamic_flag_spec \
+whole_archive_flag_spec \
+compiler_needs_object \
+with_gnu_ld \
+allow_undefined_flag \
+no_undefined_flag \
+hardcode_libdir_flag_spec \
+hardcode_libdir_flag_spec_ld \
+hardcode_libdir_separator \
+fix_srcfile_path \
+exclude_expsyms \
+include_expsyms \
+file_list_spec \
+variables_saved_for_relink \
+libname_spec \
+library_names_spec \
+soname_spec \
+finish_eval \
+old_striplib \
+striplib \
+compiler_lib_search_dirs \
+predep_objects \
+postdep_objects \
+predeps \
+postdeps \
+compiler_lib_search_path \
+LD_CXX \
+compiler_CXX \
+lt_prog_compiler_no_builtin_flag_CXX \
+lt_prog_compiler_wl_CXX \
+lt_prog_compiler_pic_CXX \
+lt_prog_compiler_static_CXX \
+lt_cv_prog_compiler_c_o_CXX \
+export_dynamic_flag_spec_CXX \
+whole_archive_flag_spec_CXX \
+compiler_needs_object_CXX \
+with_gnu_ld_CXX \
+allow_undefined_flag_CXX \
+no_undefined_flag_CXX \
+hardcode_libdir_flag_spec_CXX \
+hardcode_libdir_flag_spec_ld_CXX \
+hardcode_libdir_separator_CXX \
+fix_srcfile_path_CXX \
+exclude_expsyms_CXX \
+include_expsyms_CXX \
+file_list_spec_CXX \
+compiler_lib_search_dirs_CXX \
+predep_objects_CXX \
+postdep_objects_CXX \
+predeps_CXX \
+postdeps_CXX \
+compiler_lib_search_path_CXX; do
+ case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
+ *[\\\\\\\`\\"\\\$]*)
+ eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$sed_quote_subst\\"\\\`\\\\\\""
+ ;;
+ *)
+ eval "lt_\$var=\\\\\\"\\\$\$var\\\\\\""
+ ;;
+ esac
+done
+
+# Double-quote double-evaled strings.
+for var in reload_cmds \
+old_postinstall_cmds \
+old_postuninstall_cmds \
+old_archive_cmds \
+extract_expsyms_cmds \
+old_archive_from_new_cmds \
+old_archive_from_expsyms_cmds \
+archive_cmds \
+archive_expsym_cmds \
+module_cmds \
+module_expsym_cmds \
+export_symbols_cmds \
+prelink_cmds \
+postinstall_cmds \
+postuninstall_cmds \
+finish_cmds \
+sys_lib_search_path_spec \
+sys_lib_dlsearch_path_spec \
+old_archive_cmds_CXX \
+old_archive_from_new_cmds_CXX \
+old_archive_from_expsyms_cmds_CXX \
+archive_cmds_CXX \
+archive_expsym_cmds_CXX \
+module_cmds_CXX \
+module_expsym_cmds_CXX \
+export_symbols_cmds_CXX \
+prelink_cmds_CXX; do
+ case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
+ *[\\\\\\\`\\"\\\$]*)
+ eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$double_quote_subst\\" -e \\"\\\$sed_quote_subst\\" -e \\"\\\$delay_variable_subst\\"\\\`\\\\\\""
+ ;;
+ *)
+ eval "lt_\$var=\\\\\\"\\\$\$var\\\\\\""
+ ;;
+ esac
+done
+
+# Fix-up fallback echo if it was mangled by the above quoting rules.
+case \$lt_ECHO in
+*'\\\$0 --fallback-echo"') lt_ECHO=\`\$ECHO "X\$lt_ECHO" | \$Xsed -e 's/\\\\\\\\\\\\\\\$0 --fallback-echo"\$/\$0 --fallback-echo"/'\`
+ ;;
+esac
+
+ac_aux_dir='$ac_aux_dir'
+xsi_shell='$xsi_shell'
+lt_shell_append='$lt_shell_append'
+
+# See if we are running on zsh, and set the options which allow our
+# commands through without removal of \ escapes INIT.
+if test -n "\${ZSH_VERSION+set}" ; then
+ setopt NO_GLOB_SUBST
+fi
+
+
+ PACKAGE='$PACKAGE'
+ VERSION='$VERSION'
+ TIMESTAMP='$TIMESTAMP'
+ RM='$RM'
+ ofile='$ofile'
+
+
+
+
+
+AMDEP_TRUE="$AMDEP_TRUE" ac_aux_dir="$ac_aux_dir"
+
+_ACEOF
+
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+
+# Handling of arguments.
+for ac_config_target in $ac_config_targets
+do
+ case $ac_config_target in
+ "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
+ "depfiles") CONFIG_COMMANDS="$CONFIG_COMMANDS depfiles" ;;
+ "config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
+ "Makefile") CONFIG_FILES="$CONFIG_FILES Makefile" ;;
+ "method_lib/Makefile") CONFIG_FILES="$CONFIG_FILES method_lib/Makefile" ;;
+
+ *) { { $as_echo "$as_me:$LINENO: error: invalid argument: $ac_config_target" >&5
+$as_echo "$as_me: error: invalid argument: $ac_config_target" >&2;}
+ { (exit 1); exit 1; }; };;
+ esac
+done
+
+
+# If the user did not use the arguments to specify the items to instantiate,
+# then the envvar interface is used. Set only those that are not.
+# We use the long form for the default assignment because of an extremely
+# bizarre bug on SunOS 4.1.3.
+if $ac_need_defaults; then
+ test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
+ test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
+ test "${CONFIG_COMMANDS+set}" = set || CONFIG_COMMANDS=$config_commands
+fi
+
+# Have a temporary directory for convenience. Make it in the build tree
+# simply because there is no reason against having it here, and in addition,
+# creating and moving files from /tmp can sometimes cause problems.
+# Hook for its removal unless debugging.
+# Note that there is a small window in which the directory will not be cleaned:
+# after its creation but before its name has been assigned to `$tmp'.
+$debug ||
+{
+ tmp=
+ trap 'exit_status=$?
+ { test -z "$tmp" || test ! -d "$tmp" || rm -fr "$tmp"; } && exit $exit_status
+' 0
+ trap '{ (exit 1); exit 1; }' 1 2 13 15
+}
+# Create a (secure) tmp directory for tmp files.
+
+{
+ tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
+ test -n "$tmp" && test -d "$tmp"
+} ||
+{
+ tmp=./conf$$-$RANDOM
+ (umask 077 && mkdir "$tmp")
+} ||
+{
+ $as_echo "$as_me: cannot create a temporary directory in ." >&2
+ { (exit 1); exit 1; }
+}
+
+# Set up the scripts for CONFIG_FILES section.
+# No need to generate them if there are no CONFIG_FILES.
+# This happens for instance with `./config.status config.h'.
+if test -n "$CONFIG_FILES"; then
+
+
+ac_cr='
'
+ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
+if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
+ ac_cs_awk_cr='\\r'
+else
+ ac_cs_awk_cr=$ac_cr
+fi
+
+echo 'BEGIN {' >"$tmp/subs1.awk" &&
+_ACEOF
+
+
+{
+ echo "cat >conf$$subs.awk <<_ACEOF" &&
+ echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' &&
+ echo "_ACEOF"
+} >conf$$subs.sh ||
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
+ac_delim_num=`echo "$ac_subst_vars" | grep -c '$'`
+ac_delim='%!_!# '
+for ac_last_try in false false false false false :; do
+ . ./conf$$subs.sh ||
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
+
+ ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
+ if test $ac_delim_n = $ac_delim_num; then
+ break
+ elif $ac_last_try; then
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
+ else
+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
+ fi
+done
+rm -f conf$$subs.sh
+
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+cat >>"\$tmp/subs1.awk" <<\\_ACAWK &&
+_ACEOF
+sed -n '
+h
+s/^/S["/; s/!.*/"]=/
+p
+g
+s/^[^!]*!//
+:repl
+t repl
+s/'"$ac_delim"'$//
+t delim
+:nl
+h
+s/\(.\{148\}\).*/\1/
+t more1
+s/["\\]/\\&/g; s/^/"/; s/$/\\n"\\/
+p
+n
+b repl
+:more1
+s/["\\]/\\&/g; s/^/"/; s/$/"\\/
+p
+g
+s/.\{148\}//
+t nl
+:delim
+h
+s/\(.\{148\}\).*/\1/
+t more2
+s/["\\]/\\&/g; s/^/"/; s/$/"/
+p
+b
+:more2
+s/["\\]/\\&/g; s/^/"/; s/$/"\\/
+p
+g
+s/.\{148\}//
+t delim
+' <conf$$subs.awk | sed '
+/^[^""]/{
+ N
+ s/\n//
+}
+' >>$CONFIG_STATUS || ac_write_fail=1
+rm -f conf$$subs.awk
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+_ACAWK
+cat >>"\$tmp/subs1.awk" <<_ACAWK &&
+ for (key in S) S_is_set[key] = 1
+ FS = ""
+
+}
+{
+ line = $ 0
+ nfields = split(line, field, "@")
+ substed = 0
+ len = length(field[1])
+ for (i = 2; i < nfields; i++) {
+ key = field[i]
+ keylen = length(key)
+ if (S_is_set[key]) {
+ value = S[key]
+ line = substr(line, 1, len) "" value "" substr(line, len + keylen + 3)
+ len += length(value) + length(field[++i])
+ substed = 1
+ } else
+ len += 1 + keylen
+ }
+
+ print line
+}
+
+_ACAWK
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then
+ sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
+else
+ cat
+fi < "$tmp/subs1.awk" > "$tmp/subs.awk" \
+ || { { $as_echo "$as_me:$LINENO: error: could not setup config files machinery" >&5
+$as_echo "$as_me: error: could not setup config files machinery" >&2;}
+ { (exit 1); exit 1; }; }
+_ACEOF
+
+# VPATH may cause trouble with some makes, so we remove $(srcdir),
+# ${srcdir} and @srcdir@ from VPATH if srcdir is ".", strip leading and
+# trailing colons and then remove the whole line if VPATH becomes empty
+# (actually we leave an empty line to preserve line numbers).
+if test "x$srcdir" = x.; then
+ ac_vpsub='/^[ ]*VPATH[ ]*=/{
+s/:*\$(srcdir):*/:/
+s/:*\${srcdir}:*/:/
+s/:*@srcdir@:*/:/
+s/^\([^=]*=[ ]*\):*/\1/
+s/:*$//
+s/^[^=]*=[ ]*$//
+}'
+fi
+
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+fi # test -n "$CONFIG_FILES"
+
+# Set up the scripts for CONFIG_HEADERS section.
+# No need to generate them if there are no CONFIG_HEADERS.
+# This happens for instance with `./config.status Makefile'.
+if test -n "$CONFIG_HEADERS"; then
+cat >"$tmp/defines.awk" <<\_ACAWK ||
+BEGIN {
+_ACEOF
+
+# Transform confdefs.h into an awk script `defines.awk', embedded as
+# here-document in config.status, that substitutes the proper values into
+# config.h.in to produce config.h.
+
+# Create a delimiter string that does not exist in confdefs.h, to ease
+# handling of long lines.
+ac_delim='%!_!# '
+for ac_last_try in false false :; do
+ ac_t=`sed -n "/$ac_delim/p" confdefs.h`
+ if test -z "$ac_t"; then
+ break
+ elif $ac_last_try; then
+ { { $as_echo "$as_me:$LINENO: error: could not make $CONFIG_HEADERS" >&5
+$as_echo "$as_me: error: could not make $CONFIG_HEADERS" >&2;}
+ { (exit 1); exit 1; }; }
+ else
+ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
+ fi
+done
+
+# For the awk script, D is an array of macro values keyed by name,
+# likewise P contains macro parameters if any. Preserve backslash
+# newline sequences.
+
+ac_word_re=[_$as_cr_Letters][_$as_cr_alnum]*
+sed -n '
+s/.\{148\}/&'"$ac_delim"'/g
+t rset
+:rset
+s/^[ ]*#[ ]*define[ ][ ]*/ /
+t def
+d
+:def
+s/\\$//
+t bsnl
+s/["\\]/\\&/g
+s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\
+D["\1"]=" \3"/p
+s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2"/p
+d
+:bsnl
+s/["\\]/\\&/g
+s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\
+D["\1"]=" \3\\\\\\n"\\/p
+t cont
+s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2\\\\\\n"\\/p
+t cont
+d
+:cont
+n
+s/.\{148\}/&'"$ac_delim"'/g
+t clear
+:clear
+s/\\$//
+t bsnlc
+s/["\\]/\\&/g; s/^/"/; s/$/"/p
+d
+:bsnlc
+s/["\\]/\\&/g; s/^/"/; s/$/\\\\\\n"\\/p
+b cont
+' <confdefs.h | sed '
+s/'"$ac_delim"'/"\\\
+"/g' >>$CONFIG_STATUS || ac_write_fail=1
+
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ for (key in D) D_is_set[key] = 1
+ FS = ""
+}
+/^[\t ]*#[\t ]*(define|undef)[\t ]+$ac_word_re([\t (]|\$)/ {
+ line = \$ 0
+ split(line, arg, " ")
+ if (arg[1] == "#") {
+ defundef = arg[2]
+ mac1 = arg[3]
+ } else {
+ defundef = substr(arg[1], 2)
+ mac1 = arg[2]
+ }
+ split(mac1, mac2, "(") #)
+ macro = mac2[1]
+ prefix = substr(line, 1, index(line, defundef) - 1)
+ if (D_is_set[macro]) {
+ # Preserve the white space surrounding the "#".
+ print prefix "define", macro P[macro] D[macro]
+ next
+ } else {
+ # Replace #undef with comments. This is necessary, for example,
+ # in the case of _POSIX_SOURCE, which is predefined and required
+ # on some systems where configure will not decide to define it.
+ if (defundef == "undef") {
+ print "/*", prefix defundef, macro, "*/"
+ next
+ }
+ }
+}
+{ print }
+_ACAWK
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+ { { $as_echo "$as_me:$LINENO: error: could not setup config headers machinery" >&5
+$as_echo "$as_me: error: could not setup config headers machinery" >&2;}
+ { (exit 1); exit 1; }; }
+fi # test -n "$CONFIG_HEADERS"
+
+
+eval set X " :F $CONFIG_FILES :H $CONFIG_HEADERS :C $CONFIG_COMMANDS"
+shift
+for ac_tag
+do
+ case $ac_tag in
+ :[FHLC]) ac_mode=$ac_tag; continue;;
+ esac
+ case $ac_mode$ac_tag in
+ :[FHL]*:*);;
+ :L* | :C*:*) { { $as_echo "$as_me:$LINENO: error: invalid tag $ac_tag" >&5
+$as_echo "$as_me: error: invalid tag $ac_tag" >&2;}
+ { (exit 1); exit 1; }; };;
+ :[FH]-) ac_tag=-:-;;
+ :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
+ esac
+ ac_save_IFS=$IFS
+ IFS=:
+ set x $ac_tag
+ IFS=$ac_save_IFS
+ shift
+ ac_file=$1
+ shift
+
+ case $ac_mode in
+ :L) ac_source=$1;;
+ :[FH])
+ ac_file_inputs=
+ for ac_f
+ do
+ case $ac_f in
+ -) ac_f="$tmp/stdin";;
+ *) # Look for the file first in the build tree, then in the source tree
+ # (if the path is not absolute). The absolute path cannot be DOS-style,
+ # because $ac_f cannot contain `:'.
+ test -f "$ac_f" ||
+ case $ac_f in
+ [\\/$]*) false;;
+ *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
+ esac ||
+ { { $as_echo "$as_me:$LINENO: error: cannot find input file: $ac_f" >&5
+$as_echo "$as_me: error: cannot find input file: $ac_f" >&2;}
+ { (exit 1); exit 1; }; };;
+ esac
+ case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
+ ac_file_inputs="$ac_file_inputs '$ac_f'"
+ done
+
+ # Let's still pretend it is `configure' which instantiates (i.e., don't
+ # use $as_me), people would be surprised to read:
+ # /* config.h. Generated by config.status. */
+ configure_input='Generated from '`
+ $as_echo "$*" | sed 's|^[^:]*/||;s|:[^:]*/|, |g'
+ `' by configure.'
+ if test x"$ac_file" != x-; then
+ configure_input="$ac_file. $configure_input"
+ { $as_echo "$as_me:$LINENO: creating $ac_file" >&5
+$as_echo "$as_me: creating $ac_file" >&6;}
+ fi
+ # Neutralize special characters interpreted by sed in replacement strings.
+ case $configure_input in #(
+ *\&* | *\|* | *\\* )
+ ac_sed_conf_input=`$as_echo "$configure_input" |
+ sed 's/[\\\\&|]/\\\\&/g'`;; #(
+ *) ac_sed_conf_input=$configure_input;;
+ esac
+
+ case $ac_tag in
+ *:-:* | *:-) cat >"$tmp/stdin" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; } ;;
+ esac
+ ;;
+ esac
+
+ ac_dir=`$as_dirname -- "$ac_file" ||
+$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$ac_file" : 'X\(//\)[^/]' \| \
+ X"$ac_file" : 'X\(//\)$' \| \
+ X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$ac_file" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ { as_dir="$ac_dir"
+ case $as_dir in #(
+ -*) as_dir=./$as_dir;;
+ esac
+ test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
+ as_dirs=
+ while :; do
+ case $as_dir in #(
+ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+ *) as_qdir=$as_dir;;
+ esac
+ as_dirs="'$as_qdir' $as_dirs"
+ as_dir=`$as_dirname -- "$as_dir" ||
+$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$as_dir" : 'X\(//\)[^/]' \| \
+ X"$as_dir" : 'X\(//\)$' \| \
+ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ test -d "$as_dir" && break
+ done
+ test -z "$as_dirs" || eval "mkdir $as_dirs"
+ } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
+$as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
+ { (exit 1); exit 1; }; }; }
+ ac_builddir=.
+
+case "$ac_dir" in
+.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
+*)
+ ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
+ # A ".." for each directory in $ac_dir_suffix.
+ ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
+ case $ac_top_builddir_sub in
+ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
+ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
+ esac ;;
+esac
+ac_abs_top_builddir=$ac_pwd
+ac_abs_builddir=$ac_pwd$ac_dir_suffix
+# for backward compatibility:
+ac_top_builddir=$ac_top_build_prefix
+
+case $srcdir in
+ .) # We are building in place.
+ ac_srcdir=.
+ ac_top_srcdir=$ac_top_builddir_sub
+ ac_abs_top_srcdir=$ac_pwd ;;
+ [\\/]* | ?:[\\/]* ) # Absolute name.
+ ac_srcdir=$srcdir$ac_dir_suffix;
+ ac_top_srcdir=$srcdir
+ ac_abs_top_srcdir=$srcdir ;;
+ *) # Relative name.
+ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
+ ac_top_srcdir=$ac_top_build_prefix$srcdir
+ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
+esac
+ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
+
+
+ case $ac_mode in
+ :F)
+ #
+ # CONFIG_FILE
+ #
+
+ case $INSTALL in
+ [\\/$]* | ?:[\\/]* ) ac_INSTALL=$INSTALL ;;
+ *) ac_INSTALL=$ac_top_build_prefix$INSTALL ;;
+ esac
+ ac_MKDIR_P=$MKDIR_P
+ case $MKDIR_P in
+ [\\/$]* | ?:[\\/]* ) ;;
+ */*) ac_MKDIR_P=$ac_top_build_prefix$MKDIR_P ;;
+ esac
+_ACEOF
+
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+# If the template does not know about datarootdir, expand it.
+# FIXME: This hack should be removed a few years after 2.60.
+ac_datarootdir_hack=; ac_datarootdir_seen=
+
+ac_sed_dataroot='
+/datarootdir/ {
+ p
+ q
+}
+/@datadir@/p
+/@docdir@/p
+/@infodir@/p
+/@localedir@/p
+/@mandir@/p
+'
+case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
+*datarootdir*) ac_datarootdir_seen=yes;;
+*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
+$as_echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
+_ACEOF
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ ac_datarootdir_hack='
+ s&@datadir@&$datadir&g
+ s&@docdir@&$docdir&g
+ s&@infodir@&$infodir&g
+ s&@localedir@&$localedir&g
+ s&@mandir@&$mandir&g
+ s&\\\${datarootdir}&$datarootdir&g' ;;
+esac
+_ACEOF
+
+# Neutralize VPATH when `$srcdir' = `.'.
+# Shell code in configure.ac might set extrasub.
+# FIXME: do we really want to maintain this feature?
+cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
+ac_sed_extra="$ac_vpsub
+$extrasub
+_ACEOF
+cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
+:t
+/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
+s|@configure_input@|$ac_sed_conf_input|;t t
+s&@top_builddir@&$ac_top_builddir_sub&;t t
+s&@top_build_prefix@&$ac_top_build_prefix&;t t
+s&@srcdir@&$ac_srcdir&;t t
+s&@abs_srcdir@&$ac_abs_srcdir&;t t
+s&@top_srcdir@&$ac_top_srcdir&;t t
+s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
+s&@builddir@&$ac_builddir&;t t
+s&@abs_builddir@&$ac_abs_builddir&;t t
+s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
+s&@INSTALL@&$ac_INSTALL&;t t
+s&@MKDIR_P@&$ac_MKDIR_P&;t t
+$ac_datarootdir_hack
+"
+eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$tmp/subs.awk" >$tmp/out \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; }
+
+test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
+ { ac_out=`sed -n '/\${datarootdir}/p' "$tmp/out"`; test -n "$ac_out"; } &&
+ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' "$tmp/out"`; test -z "$ac_out"; } &&
+ { $as_echo "$as_me:$LINENO: WARNING: $ac_file contains a reference to the variable \`datarootdir'
+which seems to be undefined. Please make sure it is defined." >&5
+$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
+which seems to be undefined. Please make sure it is defined." >&2;}
+
+ rm -f "$tmp/stdin"
+ case $ac_file in
+ -) cat "$tmp/out" && rm -f "$tmp/out";;
+ *) rm -f "$ac_file" && mv "$tmp/out" "$ac_file";;
+ esac \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; }
+ ;;
+ :H)
+ #
+ # CONFIG_HEADER
+ #
+ if test x"$ac_file" != x-; then
+ {
+ $as_echo "/* $configure_input */" \
+ && eval '$AWK -f "$tmp/defines.awk"' "$ac_file_inputs"
+ } >"$tmp/config.h" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; }
+ if diff "$ac_file" "$tmp/config.h" >/dev/null 2>&1; then
+ { $as_echo "$as_me:$LINENO: $ac_file is unchanged" >&5
+$as_echo "$as_me: $ac_file is unchanged" >&6;}
+ else
+ rm -f "$ac_file"
+ mv "$tmp/config.h" "$ac_file" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create $ac_file" >&5
+$as_echo "$as_me: error: could not create $ac_file" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+ else
+ $as_echo "/* $configure_input */" \
+ && eval '$AWK -f "$tmp/defines.awk"' "$ac_file_inputs" \
+ || { { $as_echo "$as_me:$LINENO: error: could not create -" >&5
+$as_echo "$as_me: error: could not create -" >&2;}
+ { (exit 1); exit 1; }; }
+ fi
+# Compute "$ac_file"'s index in $config_headers.
+_am_arg="$ac_file"
+_am_stamp_count=1
+for _am_header in $config_headers :; do
+ case $_am_header in
+ $_am_arg | $_am_arg:* )
+ break ;;
+ * )
+ _am_stamp_count=`expr $_am_stamp_count + 1` ;;
+ esac
+done
+echo "timestamp for $_am_arg" >`$as_dirname -- "$_am_arg" ||
+$as_expr X"$_am_arg" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$_am_arg" : 'X\(//\)[^/]' \| \
+ X"$_am_arg" : 'X\(//\)$' \| \
+ X"$_am_arg" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$_am_arg" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`/stamp-h$_am_stamp_count
+ ;;
+
+ :C) { $as_echo "$as_me:$LINENO: executing $ac_file commands" >&5
+$as_echo "$as_me: executing $ac_file commands" >&6;}
+ ;;
+ esac
+
+
+ case $ac_file$ac_mode in
+ "libtool":C)
+
+ # See if we are running on zsh, and set the options which allow our
+ # commands through without removal of \ escapes.
+ if test -n "${ZSH_VERSION+set}" ; then
+ setopt NO_GLOB_SUBST
+ fi
+
+ cfgfile="${ofile}T"
+ trap "$RM \"$cfgfile\"; exit 1" 1 2 15
+ $RM "$cfgfile"
+
+ cat <<_LT_EOF >> "$cfgfile"
+#! $SHELL
+
+# `$ECHO "$ofile" | sed 's%^.*/%%'` - Provide generalized library-building support services.
+# Generated automatically by $as_me ($PACKAGE$TIMESTAMP) $VERSION
+# Libtool was configured on host `(hostname || uname -n) 2>/dev/null | sed 1q`:
+# NOTE: Changes made to this file will be lost: look at ltmain.sh.
+#
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005,
+# 2006, 2007, 2008 Free Software Foundation, Inc.
+# Written by Gordon Matzigkeit, 1996
+#
+# This file is part of GNU Libtool.
+#
+# GNU Libtool is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License as
+# published by the Free Software Foundation; either version 2 of
+# the License, or (at your option) any later version.
+#
+# As a special exception to the GNU General Public License,
+# if you distribute this file as part of a program or library that
+# is built using GNU Libtool, you may include this file under the
+# same distribution terms that you use for the rest of that program.
+#
+# GNU Libtool is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with GNU Libtool; see the file COPYING. If not, a copy
+# can be downloaded from http://www.gnu.org/licenses/gpl.html, or
+# obtained by writing to the Free Software Foundation, Inc.,
+# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+
+
+# The names of the tagged configurations supported by this script.
+available_tags="CXX "
+
+# ### BEGIN LIBTOOL CONFIG
+
+# Which release of libtool.m4 was used?
+macro_version=$macro_version
+macro_revision=$macro_revision
+
+# Whether or not to build shared libraries.
+build_libtool_libs=$enable_shared
+
+# Whether or not to build static libraries.
+build_old_libs=$enable_static
+
+# What type of objects to build.
+pic_mode=$pic_mode
+
+# Whether or not to optimize for fast installation.
+fast_install=$enable_fast_install
+
+# The host system.
+host_alias=$host_alias
+host=$host
+host_os=$host_os
+
+# The build system.
+build_alias=$build_alias
+build=$build
+build_os=$build_os
+
+# A sed program that does not truncate output.
+SED=$lt_SED
+
+# Sed that helps us avoid accidentally triggering echo(1) options like -n.
+Xsed="\$SED -e 1s/^X//"
+
+# A grep program that handles long lines.
+GREP=$lt_GREP
+
+# An ERE matcher.
+EGREP=$lt_EGREP
+
+# A literal string matcher.
+FGREP=$lt_FGREP
+
+# A BSD- or MS-compatible name lister.
+NM=$lt_NM
+
+# Whether we need soft or hard links.
+LN_S=$lt_LN_S
+
+# What is the maximum length of a command?
+max_cmd_len=$max_cmd_len
+
+# Object file suffix (normally "o").
+objext=$ac_objext
+
+# Executable file suffix (normally "").
+exeext=$exeext
+
+# whether the shell understands "unset".
+lt_unset=$lt_unset
+
+# turn spaces into newlines.
+SP2NL=$lt_lt_SP2NL
+
+# turn newlines into spaces.
+NL2SP=$lt_lt_NL2SP
+
+# How to create reloadable object files.
+reload_flag=$lt_reload_flag
+reload_cmds=$lt_reload_cmds
+
+# An object symbol dumper.
+OBJDUMP=$lt_OBJDUMP
+
+# Method to check whether dependent libraries are shared objects.
+deplibs_check_method=$lt_deplibs_check_method
+
+# Command to use when deplibs_check_method == "file_magic".
+file_magic_cmd=$lt_file_magic_cmd
+
+# The archiver.
+AR=$lt_AR
+AR_FLAGS=$lt_AR_FLAGS
+
+# A symbol stripping program.
+STRIP=$lt_STRIP
+
+# Commands used to install an old-style archive.
+RANLIB=$lt_RANLIB
+old_postinstall_cmds=$lt_old_postinstall_cmds
+old_postuninstall_cmds=$lt_old_postuninstall_cmds
+
+# A C compiler.
+LTCC=$lt_CC
+
+# LTCC compiler flags.
+LTCFLAGS=$lt_CFLAGS
+
+# Take the output of nm and produce a listing of raw symbols and C names.
+global_symbol_pipe=$lt_lt_cv_sys_global_symbol_pipe
+
+# Transform the output of nm in a proper C declaration.
+global_symbol_to_cdecl=$lt_lt_cv_sys_global_symbol_to_cdecl
+
+# Transform the output of nm in a C name address pair.
+global_symbol_to_c_name_address=$lt_lt_cv_sys_global_symbol_to_c_name_address
+
+# Transform the output of nm in a C name address pair when lib prefix is needed.
+global_symbol_to_c_name_address_lib_prefix=$lt_lt_cv_sys_global_symbol_to_c_name_address_lib_prefix
+
+# The name of the directory that contains temporary libtool files.
+objdir=$objdir
+
+# Shell to use when invoking shell scripts.
+SHELL=$lt_SHELL
+
+# An echo program that does not interpret backslashes.
+ECHO=$lt_ECHO
+
+# Used to examine libraries when file_magic_cmd begins with "file".
+MAGIC_CMD=$MAGIC_CMD
+
+# Must we lock files when doing compilation?
+need_locks=$lt_need_locks
+
+# Tool to manipulate archived DWARF debug symbol files on Mac OS X.
+DSYMUTIL=$lt_DSYMUTIL
+
+# Tool to change global to local symbols on Mac OS X.
+NMEDIT=$lt_NMEDIT
+
+# Tool to manipulate fat objects and archives on Mac OS X.
+LIPO=$lt_LIPO
+
+# ldd/readelf like tool for Mach-O binaries on Mac OS X.
+OTOOL=$lt_OTOOL
+
+# ldd/readelf like tool for 64 bit Mach-O binaries on Mac OS X 10.4.
+OTOOL64=$lt_OTOOL64
+
+# Old archive suffix (normally "a").
+libext=$libext
+
+# Shared library suffix (normally ".so").
+shrext_cmds=$lt_shrext_cmds
+
+# The commands to extract the exported symbol list from a shared archive.
+extract_expsyms_cmds=$lt_extract_expsyms_cmds
+
+# Variables whose values should be saved in libtool wrapper scripts and
+# restored at link time.
+variables_saved_for_relink=$lt_variables_saved_for_relink
+
+# Do we need the "lib" prefix for modules?
+need_lib_prefix=$need_lib_prefix
+
+# Do we need a version for libraries?
+need_version=$need_version
+
+# Library versioning type.
+version_type=$version_type
+
+# Shared library runtime path variable.
+runpath_var=$runpath_var
+
+# Shared library path variable.
+shlibpath_var=$shlibpath_var
+
+# Is shlibpath searched before the hard-coded library search path?
+shlibpath_overrides_runpath=$shlibpath_overrides_runpath
+
+# Format of library name prefix.
+libname_spec=$lt_libname_spec
+
+# List of archive names. First name is the real one, the rest are links.
+# The last name is the one that the linker finds with -lNAME
+library_names_spec=$lt_library_names_spec
+
+# The coded name of the library, if different from the real name.
+soname_spec=$lt_soname_spec
+
+# Command to use after installation of a shared archive.
+postinstall_cmds=$lt_postinstall_cmds
+
+# Command to use after uninstallation of a shared archive.
+postuninstall_cmds=$lt_postuninstall_cmds
+
+# Commands used to finish a libtool library installation in a directory.
+finish_cmds=$lt_finish_cmds
+
+# As "finish_cmds", except a single script fragment to be evaled but
+# not shown.
+finish_eval=$lt_finish_eval
+
+# Whether we should hardcode library paths into libraries.
+hardcode_into_libs=$hardcode_into_libs
+
+# Compile-time system search path for libraries.
+sys_lib_search_path_spec=$lt_sys_lib_search_path_spec
+
+# Run-time system search path for libraries.
+sys_lib_dlsearch_path_spec=$lt_sys_lib_dlsearch_path_spec
+
+# Whether dlopen is supported.
+dlopen_support=$enable_dlopen
+
+# Whether dlopen of programs is supported.
+dlopen_self=$enable_dlopen_self
+
+# Whether dlopen of statically linked programs is supported.
+dlopen_self_static=$enable_dlopen_self_static
+
+# Commands to strip libraries.
+old_striplib=$lt_old_striplib
+striplib=$lt_striplib
+
+
+# The linker used to build libraries.
+LD=$lt_LD
+
+# Commands used to build an old-style archive.
+old_archive_cmds=$lt_old_archive_cmds
+
+# A language specific compiler.
+CC=$lt_compiler
+
+# Is the compiler the GNU compiler?
+with_gcc=$GCC
+
+# Compiler flag to turn off builtin functions.
+no_builtin_flag=$lt_lt_prog_compiler_no_builtin_flag
+
+# How to pass a linker flag through the compiler.
+wl=$lt_lt_prog_compiler_wl
+
+# Additional compiler flags for building library objects.
+pic_flag=$lt_lt_prog_compiler_pic
+
+# Compiler flag to prevent dynamic linking.
+link_static_flag=$lt_lt_prog_compiler_static
+
+# Does compiler simultaneously support -c and -o options?
+compiler_c_o=$lt_lt_cv_prog_compiler_c_o
+
+# Whether or not to add -lc for building shared libraries.
+build_libtool_need_lc=$archive_cmds_need_lc
+
+# Whether or not to disallow shared libs when runtime libs are static.
+allow_libtool_libs_with_static_runtimes=$enable_shared_with_static_runtimes
+
+# Compiler flag to allow reflexive dlopens.
+export_dynamic_flag_spec=$lt_export_dynamic_flag_spec
+
+# Compiler flag to generate shared objects directly from archives.
+whole_archive_flag_spec=$lt_whole_archive_flag_spec
+
+# Whether the compiler copes with passing no objects directly.
+compiler_needs_object=$lt_compiler_needs_object
+
+# Create an old-style archive from a shared archive.
+old_archive_from_new_cmds=$lt_old_archive_from_new_cmds
+
+# Create a temporary old-style archive to link instead of a shared archive.
+old_archive_from_expsyms_cmds=$lt_old_archive_from_expsyms_cmds
+
+# Commands used to build a shared archive.
+archive_cmds=$lt_archive_cmds
+archive_expsym_cmds=$lt_archive_expsym_cmds
+
+# Commands used to build a loadable module if different from building
+# a shared archive.
+module_cmds=$lt_module_cmds
+module_expsym_cmds=$lt_module_expsym_cmds
+
+# Whether we are building with GNU ld or not.
+with_gnu_ld=$lt_with_gnu_ld
+
+# Flag that allows shared libraries with undefined symbols to be built.
+allow_undefined_flag=$lt_allow_undefined_flag
+
+# Flag that enforces no undefined symbols.
+no_undefined_flag=$lt_no_undefined_flag
+
+# Flag to hardcode \$libdir into a binary during linking.
+# This must work even if \$libdir does not exist
+hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec
+
+# If ld is used when linking, flag to hardcode \$libdir into a binary
+# during linking. This must work even if \$libdir does not exist.
+hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld
+
+# Whether we need a single "-rpath" flag with a separated argument.
+hardcode_libdir_separator=$lt_hardcode_libdir_separator
+
+# Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
+# DIR into the resulting binary.
+hardcode_direct=$hardcode_direct
+
+# Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
+# DIR into the resulting binary and the resulting library dependency is
+# "absolute",i.e impossible to change by setting \${shlibpath_var} if the
+# library is relocated.
+hardcode_direct_absolute=$hardcode_direct_absolute
+
+# Set to "yes" if using the -LDIR flag during linking hardcodes DIR
+# into the resulting binary.
+hardcode_minus_L=$hardcode_minus_L
+
+# Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR
+# into the resulting binary.
+hardcode_shlibpath_var=$hardcode_shlibpath_var
+
+# Set to "yes" if building a shared library automatically hardcodes DIR
+# into the library and all subsequent libraries and executables linked
+# against it.
+hardcode_automatic=$hardcode_automatic
+
+# Set to yes if linker adds runtime paths of dependent libraries
+# to runtime path list.
+inherit_rpath=$inherit_rpath
+
+# Whether libtool must link a program against all its dependency libraries.
+link_all_deplibs=$link_all_deplibs
+
+# Fix the shell variable \$srcfile for the compiler.
+fix_srcfile_path=$lt_fix_srcfile_path
+
+# Set to "yes" if exported symbols are required.
+always_export_symbols=$always_export_symbols
+
+# The commands to list exported symbols.
+export_symbols_cmds=$lt_export_symbols_cmds
+
+# Symbols that should not be listed in the preloaded symbols.
+exclude_expsyms=$lt_exclude_expsyms
+
+# Symbols that must always be exported.
+include_expsyms=$lt_include_expsyms
+
+# Commands necessary for linking programs (against libraries) with templates.
+prelink_cmds=$lt_prelink_cmds
+
+# Specify filename containing input files.
+file_list_spec=$lt_file_list_spec
+
+# How to hardcode a shared library path into an executable.
+hardcode_action=$hardcode_action
+
+# The directories searched by this compiler when creating a shared library.
+compiler_lib_search_dirs=$lt_compiler_lib_search_dirs
+
+# Dependencies to place before and after the objects being linked to
+# create a shared library.
+predep_objects=$lt_predep_objects
+postdep_objects=$lt_postdep_objects
+predeps=$lt_predeps
+postdeps=$lt_postdeps
+
+# The library search path used internally by the compiler when linking
+# a shared library.
+compiler_lib_search_path=$lt_compiler_lib_search_path
+
+# ### END LIBTOOL CONFIG
+
+_LT_EOF
+
+ case $host_os in
+ aix3*)
+ cat <<\_LT_EOF >> "$cfgfile"
+# AIX sometimes has problems with the GCC collect2 program. For some
+# reason, if we set the COLLECT_NAMES environment variable, the problems
+# vanish in a puff of smoke.
+if test "X${COLLECT_NAMES+set}" != Xset; then
+ COLLECT_NAMES=
+ export COLLECT_NAMES
+fi
+_LT_EOF
+ ;;
+ esac
+
+
+ltmain="$ac_aux_dir/ltmain.sh"
+
+
+ # We use sed instead of cat because bash on DJGPP gets confused if
+ # if finds mixed CR/LF and LF-only lines. Since sed operates in
+ # text mode, it properly converts lines to CR/LF. This bash problem
+ # is reportedly fixed, but why not run on old versions too?
+ sed '/^# Generated shell functions inserted here/q' "$ltmain" >> "$cfgfile" \
+ || (rm -f "$cfgfile"; exit 1)
+
+ case $xsi_shell in
+ yes)
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_dirname file append nondir_replacement
+# Compute the dirname of FILE. If nonempty, add APPEND to the result,
+# otherwise set result to NONDIR_REPLACEMENT.
+func_dirname ()
+{
+ case ${1} in
+ */*) func_dirname_result="${1%/*}${2}" ;;
+ * ) func_dirname_result="${3}" ;;
+ esac
+}
+
+# func_basename file
+func_basename ()
+{
+ func_basename_result="${1##*/}"
+}
+
+# func_dirname_and_basename file append nondir_replacement
+# perform func_basename and func_dirname in a single function
+# call:
+# dirname: Compute the dirname of FILE. If nonempty,
+# add APPEND to the result, otherwise set result
+# to NONDIR_REPLACEMENT.
+# value returned in "$func_dirname_result"
+# basename: Compute filename of FILE.
+# value retuned in "$func_basename_result"
+# Implementation must be kept synchronized with func_dirname
+# and func_basename. For efficiency, we do not delegate to
+# those functions but instead duplicate the functionality here.
+func_dirname_and_basename ()
+{
+ case ${1} in
+ */*) func_dirname_result="${1%/*}${2}" ;;
+ * ) func_dirname_result="${3}" ;;
+ esac
+ func_basename_result="${1##*/}"
+}
+
+# func_stripname prefix suffix name
+# strip PREFIX and SUFFIX off of NAME.
+# PREFIX and SUFFIX must not contain globbing or regex special
+# characters, hashes, percent signs, but SUFFIX may contain a leading
+# dot (in which case that matches only a dot).
+func_stripname ()
+{
+ # pdksh 5.2.14 does not do ${X%$Y} correctly if both X and Y are
+ # positional parameters, so assign one to ordinary parameter first.
+ func_stripname_result=${3}
+ func_stripname_result=${func_stripname_result#"${1}"}
+ func_stripname_result=${func_stripname_result%"${2}"}
+}
+
+# func_opt_split
+func_opt_split ()
+{
+ func_opt_split_opt=${1%%=*}
+ func_opt_split_arg=${1#*=}
+}
+
+# func_lo2o object
+func_lo2o ()
+{
+ case ${1} in
+ *.lo) func_lo2o_result=${1%.lo}.${objext} ;;
+ *) func_lo2o_result=${1} ;;
+ esac
+}
+
+# func_xform libobj-or-source
+func_xform ()
+{
+ func_xform_result=${1%.*}.lo
+}
+
+# func_arith arithmetic-term...
+func_arith ()
+{
+ func_arith_result=$(( $* ))
+}
+
+# func_len string
+# STRING may not start with a hyphen.
+func_len ()
+{
+ func_len_result=${#1}
+}
+
+_LT_EOF
+ ;;
+ *) # Bourne compatible functions.
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_dirname file append nondir_replacement
+# Compute the dirname of FILE. If nonempty, add APPEND to the result,
+# otherwise set result to NONDIR_REPLACEMENT.
+func_dirname ()
+{
+ # Extract subdirectory from the argument.
+ func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"`
+ if test "X$func_dirname_result" = "X${1}"; then
+ func_dirname_result="${3}"
+ else
+ func_dirname_result="$func_dirname_result${2}"
+ fi
+}
+
+# func_basename file
+func_basename ()
+{
+ func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"`
+}
+
+
+# func_stripname prefix suffix name
+# strip PREFIX and SUFFIX off of NAME.
+# PREFIX and SUFFIX must not contain globbing or regex special
+# characters, hashes, percent signs, but SUFFIX may contain a leading
+# dot (in which case that matches only a dot).
+# func_strip_suffix prefix name
+func_stripname ()
+{
+ case ${2} in
+ .*) func_stripname_result=`$ECHO "X${3}" \
+ | $Xsed -e "s%^${1}%%" -e "s%\\\\${2}\$%%"`;;
+ *) func_stripname_result=`$ECHO "X${3}" \
+ | $Xsed -e "s%^${1}%%" -e "s%${2}\$%%"`;;
+ esac
+}
+
+# sed scripts:
+my_sed_long_opt='1s/^\(-[^=]*\)=.*/\1/;q'
+my_sed_long_arg='1s/^-[^=]*=//'
+
+# func_opt_split
+func_opt_split ()
+{
+ func_opt_split_opt=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_opt"`
+ func_opt_split_arg=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_arg"`
+}
+
+# func_lo2o object
+func_lo2o ()
+{
+ func_lo2o_result=`$ECHO "X${1}" | $Xsed -e "$lo2o"`
+}
+
+# func_xform libobj-or-source
+func_xform ()
+{
+ func_xform_result=`$ECHO "X${1}" | $Xsed -e 's/\.[^.]*$/.lo/'`
+}
+
+# func_arith arithmetic-term...
+func_arith ()
+{
+ func_arith_result=`expr "$@"`
+}
+
+# func_len string
+# STRING may not start with a hyphen.
+func_len ()
+{
+ func_len_result=`expr "$1" : ".*" 2>/dev/null || echo $max_cmd_len`
+}
+
+_LT_EOF
+esac
+
+case $lt_shell_append in
+ yes)
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_append var value
+# Append VALUE to the end of shell variable VAR.
+func_append ()
+{
+ eval "$1+=\$2"
+}
+_LT_EOF
+ ;;
+ *)
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_append var value
+# Append VALUE to the end of shell variable VAR.
+func_append ()
+{
+ eval "$1=\$$1\$2"
+}
+
+_LT_EOF
+ ;;
+ esac
+
+
+ sed -n '/^# Generated shell functions inserted here/,$p' "$ltmain" >> "$cfgfile" \
+ || (rm -f "$cfgfile"; exit 1)
+
+ mv -f "$cfgfile" "$ofile" ||
+ (rm -f "$ofile" && cp "$cfgfile" "$ofile" && rm -f "$cfgfile")
+ chmod +x "$ofile"
+
+
+ cat <<_LT_EOF >> "$ofile"
+
+# ### BEGIN LIBTOOL TAG CONFIG: CXX
+
+# The linker used to build libraries.
+LD=$lt_LD_CXX
+
+# Commands used to build an old-style archive.
+old_archive_cmds=$lt_old_archive_cmds_CXX
+
+# A language specific compiler.
+CC=$lt_compiler_CXX
+
+# Is the compiler the GNU compiler?
+with_gcc=$GCC_CXX
+
+# Compiler flag to turn off builtin functions.
+no_builtin_flag=$lt_lt_prog_compiler_no_builtin_flag_CXX
+
+# How to pass a linker flag through the compiler.
+wl=$lt_lt_prog_compiler_wl_CXX
+
+# Additional compiler flags for building library objects.
+pic_flag=$lt_lt_prog_compiler_pic_CXX
+
+# Compiler flag to prevent dynamic linking.
+link_static_flag=$lt_lt_prog_compiler_static_CXX
+
+# Does compiler simultaneously support -c and -o options?
+compiler_c_o=$lt_lt_cv_prog_compiler_c_o_CXX
+
+# Whether or not to add -lc for building shared libraries.
+build_libtool_need_lc=$archive_cmds_need_lc_CXX
+
+# Whether or not to disallow shared libs when runtime libs are static.
+allow_libtool_libs_with_static_runtimes=$enable_shared_with_static_runtimes_CXX
+
+# Compiler flag to allow reflexive dlopens.
+export_dynamic_flag_spec=$lt_export_dynamic_flag_spec_CXX
+
+# Compiler flag to generate shared objects directly from archives.
+whole_archive_flag_spec=$lt_whole_archive_flag_spec_CXX
+
+# Whether the compiler copes with passing no objects directly.
+compiler_needs_object=$lt_compiler_needs_object_CXX
+
+# Create an old-style archive from a shared archive.
+old_archive_from_new_cmds=$lt_old_archive_from_new_cmds_CXX
+
+# Create a temporary old-style archive to link instead of a shared archive.
+old_archive_from_expsyms_cmds=$lt_old_archive_from_expsyms_cmds_CXX
+
+# Commands used to build a shared archive.
+archive_cmds=$lt_archive_cmds_CXX
+archive_expsym_cmds=$lt_archive_expsym_cmds_CXX
+
+# Commands used to build a loadable module if different from building
+# a shared archive.
+module_cmds=$lt_module_cmds_CXX
+module_expsym_cmds=$lt_module_expsym_cmds_CXX
+
+# Whether we are building with GNU ld or not.
+with_gnu_ld=$lt_with_gnu_ld_CXX
+
+# Flag that allows shared libraries with undefined symbols to be built.
+allow_undefined_flag=$lt_allow_undefined_flag_CXX
+
+# Flag that enforces no undefined symbols.
+no_undefined_flag=$lt_no_undefined_flag_CXX
+
+# Flag to hardcode \$libdir into a binary during linking.
+# This must work even if \$libdir does not exist
+hardcode_libdir_flag_spec=$lt_hardcode_libdir_flag_spec_CXX
+
+# If ld is used when linking, flag to hardcode \$libdir into a binary
+# during linking. This must work even if \$libdir does not exist.
+hardcode_libdir_flag_spec_ld=$lt_hardcode_libdir_flag_spec_ld_CXX
+
+# Whether we need a single "-rpath" flag with a separated argument.
+hardcode_libdir_separator=$lt_hardcode_libdir_separator_CXX
+
+# Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
+# DIR into the resulting binary.
+hardcode_direct=$hardcode_direct_CXX
+
+# Set to "yes" if using DIR/libNAME\${shared_ext} during linking hardcodes
+# DIR into the resulting binary and the resulting library dependency is
+# "absolute",i.e impossible to change by setting \${shlibpath_var} if the
+# library is relocated.
+hardcode_direct_absolute=$hardcode_direct_absolute_CXX
+
+# Set to "yes" if using the -LDIR flag during linking hardcodes DIR
+# into the resulting binary.
+hardcode_minus_L=$hardcode_minus_L_CXX
+
+# Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR
+# into the resulting binary.
+hardcode_shlibpath_var=$hardcode_shlibpath_var_CXX
+
+# Set to "yes" if building a shared library automatically hardcodes DIR
+# into the library and all subsequent libraries and executables linked
+# against it.
+hardcode_automatic=$hardcode_automatic_CXX
+
+# Set to yes if linker adds runtime paths of dependent libraries
+# to runtime path list.
+inherit_rpath=$inherit_rpath_CXX
+
+# Whether libtool must link a program against all its dependency libraries.
+link_all_deplibs=$link_all_deplibs_CXX
+
+# Fix the shell variable \$srcfile for the compiler.
+fix_srcfile_path=$lt_fix_srcfile_path_CXX
+
+# Set to "yes" if exported symbols are required.
+always_export_symbols=$always_export_symbols_CXX
+
+# The commands to list exported symbols.
+export_symbols_cmds=$lt_export_symbols_cmds_CXX
+
+# Symbols that should not be listed in the preloaded symbols.
+exclude_expsyms=$lt_exclude_expsyms_CXX
+
+# Symbols that must always be exported.
+include_expsyms=$lt_include_expsyms_CXX
+
+# Commands necessary for linking programs (against libraries) with templates.
+prelink_cmds=$lt_prelink_cmds_CXX
+
+# Specify filename containing input files.
+file_list_spec=$lt_file_list_spec_CXX
+
+# How to hardcode a shared library path into an executable.
+hardcode_action=$hardcode_action_CXX
+
+# The directories searched by this compiler when creating a shared library.
+compiler_lib_search_dirs=$lt_compiler_lib_search_dirs_CXX
+
+# Dependencies to place before and after the objects being linked to
+# create a shared library.
+predep_objects=$lt_predep_objects_CXX
+postdep_objects=$lt_postdep_objects_CXX
+predeps=$lt_predeps_CXX
+postdeps=$lt_postdeps_CXX
+
+# The library search path used internally by the compiler when linking
+# a shared library.
+compiler_lib_search_path=$lt_compiler_lib_search_path_CXX
+
+# ### END LIBTOOL TAG CONFIG: CXX
+_LT_EOF
+
+ ;;
+ "depfiles":C) test x"$AMDEP_TRUE" != x"" || {
+ # Autoconf 2.62 quotes --file arguments for eval, but not when files
+ # are listed without --file. Let's play safe and only enable the eval
+ # if we detect the quoting.
+ case $CONFIG_FILES in
+ *\'*) eval set x "$CONFIG_FILES" ;;
+ *) set x $CONFIG_FILES ;;
+ esac
+ shift
+ for mf
+ do
+ # Strip MF so we end up with the name of the file.
+ mf=`echo "$mf" | sed -e 's/:.*$//'`
+ # Check whether this is an Automake generated Makefile or not.
+ # We used to match only the files named `Makefile.in', but
+ # some people rename them; so instead we look at the file content.
+ # Grep'ing the first line is not enough: some people post-process
+ # each Makefile.in and add a new line on top of each file to say so.
+ # Grep'ing the whole file is not good either: AIX grep has a line
+ # limit of 2048, but all sed's we know have understand at least 4000.
+ if sed -n 's,^#.*generated by automake.*,X,p' "$mf" | grep X >/dev/null 2>&1; then
+ dirpart=`$as_dirname -- "$mf" ||
+$as_expr X"$mf" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$mf" : 'X\(//\)[^/]' \| \
+ X"$mf" : 'X\(//\)$' \| \
+ X"$mf" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$mf" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ else
+ continue
+ fi
+ # Extract the definition of DEPDIR, am__include, and am__quote
+ # from the Makefile without running `make'.
+ DEPDIR=`sed -n 's/^DEPDIR = //p' < "$mf"`
+ test -z "$DEPDIR" && continue
+ am__include=`sed -n 's/^am__include = //p' < "$mf"`
+ test -z "am__include" && continue
+ am__quote=`sed -n 's/^am__quote = //p' < "$mf"`
+ # When using ansi2knr, U may be empty or an underscore; expand it
+ U=`sed -n 's/^U = //p' < "$mf"`
+ # Find all dependency output files, they are included files with
+ # $(DEPDIR) in their names. We invoke sed twice because it is the
+ # simplest approach to changing $(DEPDIR) to its actual value in the
+ # expansion.
+ for file in `sed -n "
+ s/^$am__include $am__quote\(.*(DEPDIR).*\)$am__quote"'$/\1/p' <"$mf" | \
+ sed -e 's/\$(DEPDIR)/'"$DEPDIR"'/g' -e 's/\$U/'"$U"'/g'`; do
+ # Make sure the directory exists.
+ test -f "$dirpart/$file" && continue
+ fdir=`$as_dirname -- "$file" ||
+$as_expr X"$file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$file" : 'X\(//\)[^/]' \| \
+ X"$file" : 'X\(//\)$' \| \
+ X"$file" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$file" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ { as_dir=$dirpart/$fdir
+ case $as_dir in #(
+ -*) as_dir=./$as_dir;;
+ esac
+ test -d "$as_dir" || { $as_mkdir_p && mkdir -p "$as_dir"; } || {
+ as_dirs=
+ while :; do
+ case $as_dir in #(
+ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
+ *) as_qdir=$as_dir;;
+ esac
+ as_dirs="'$as_qdir' $as_dirs"
+ as_dir=`$as_dirname -- "$as_dir" ||
+$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$as_dir" : 'X\(//\)[^/]' \| \
+ X"$as_dir" : 'X\(//\)$' \| \
+ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
+$as_echo X"$as_dir" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'`
+ test -d "$as_dir" && break
+ done
+ test -z "$as_dirs" || eval "mkdir $as_dirs"
+ } || test -d "$as_dir" || { { $as_echo "$as_me:$LINENO: error: cannot create directory $as_dir" >&5
+$as_echo "$as_me: error: cannot create directory $as_dir" >&2;}
+ { (exit 1); exit 1; }; }; }
+ # echo "creating $dirpart/$file"
+ echo '# dummy' > "$dirpart/$file"
+ done
+ done
+}
+ ;;
+
+ esac
+done # for ac_tag
+
+
+{ (exit 0); exit 0; }
+_ACEOF
+chmod +x $CONFIG_STATUS
+ac_clean_files=$ac_clean_files_save
+
+test $ac_write_fail = 0 ||
+ { { $as_echo "$as_me:$LINENO: error: write failure creating $CONFIG_STATUS" >&5
+$as_echo "$as_me: error: write failure creating $CONFIG_STATUS" >&2;}
+ { (exit 1); exit 1; }; }
+
+
+# configure is writing to config.log, and then calls config.status.
+# config.status does its own redirection, appending to config.log.
+# Unfortunately, on DOS this fails, as config.log is still kept open
+# by configure, so config.status won't be able to write to it; its
+# output is simply discarded. So we exec the FD to /dev/null,
+# effectively closing config.log, so it can be properly (re)opened and
+# appended to by config.status. When coming back to configure, we
+# need to make the FD available again.
+if test "$no_create" != yes; then
+ ac_cs_success=:
+ ac_config_status_args=
+ test "$silent" = yes &&
+ ac_config_status_args="$ac_config_status_args --quiet"
+ exec 5>/dev/null
+ $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
+ exec 5>>config.log
+ # Use ||, not &&, to avoid exiting from the if with $? = 1, which
+ # would make configure fail if this is the last instruction.
+ $ac_cs_success || { (exit 1); exit 1; }
+fi
+if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
+ { $as_echo "$as_me:$LINENO: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
+$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
+fi
+
diff --git a/configure.ac b/configure.ac
new file mode 100644
index 0000000..00144ea
--- /dev/null
+++ b/configure.ac
@@ -0,0 +1,49 @@
+# Ritchie Lab configure.ac template
+
+AC_PREREQ(2.59)
+AC_INIT(PLATO, 2.0.0, software at ritchielab.psu.edu)
+
+# Checks for --enable-debug added
+AX_CHECK_ENABLE_DEBUG
+#AC_PROG_CC
+#AC_PROG_CPP
+#AC_PROG_CXX
+
+
+AC_ARG_WITH(mpi, [AS_HELP_STRING([--with-mpi],
+[compile with MPI (parallelization) support. If none is found, MPI is not used. Default: auto]) ],
+,[with_mpi=auto])
+
+AX_PROG_CXX_MPI([test x"$with_mpi" != xno],[AC_DEFINE([HAVE_CXX_MPI],[],[CXX MPI Found])],[
+ AC_DEFINE([NO_CXX_MPI],[],[No C MPI Found])
+ if test x"$with_mpi" = xyes; then
+ AC_MSG_FAILURE([MPI compiler requested, but couldn't use MPI.])
+ else
+ AC_MSG_WARN([No MPI compiler found, won't use MPI.])
+ fi
+])
+
+AX_PROG_CC_MPI([test x"$with_mpi" != xno],[AC_DEFINE([HAVE_CC_MPI],[],[C MPI Found])],[
+ AC_DEFINE([NO_CC_MPI],[],[No C MPI Found])
+ if test x"$with_mpi" = xyes; then
+ AC_MSG_FAILURE([MPI compiler requested, but couldn't use MPI.])
+ else
+ AC_MSG_WARN([No MPI compiler found, won't use MPI.])
+ fi
+])
+
+
+RL_CONFIGURE([1.42],[HAVE_BOOST HAVE_BOOST_THREAD HAVE_BOOST_PROGRAM_OPTIONS \
+ HAVE_BOOST_FILESYSTEM HAVE_BOOST_REGEX HAVE_BOOST_IOSTREAMS \
+ HAVE_BOOST_SERIALIZATION HAVE_GSL])
+
+AM_INIT_AUTOMAKE([1.8 foreign])
+
+AC_CONFIG_SRCDIR([main.cpp])
+AC_CONFIG_HEADER([config.h])
+
+
+AC_CONFIG_FILES([Makefile
+ method_lib/Makefile
+ ])
+AC_OUTPUT
diff --git a/debian/changelog b/debian/changelog
deleted file mode 100644
index abf60e2..0000000
--- a/debian/changelog
+++ /dev/null
@@ -1,5 +0,0 @@
-plato (1.1-1) UNRELEASED; urgency=low
-
- * Initial release (Closes: #nnnn).
-
- -- Steffen Moeller <moeller at debian.org> Wed, 14 Sep 2011 14:47:35 +0200
diff --git a/debian/compat b/debian/compat
deleted file mode 100644
index f599e28..0000000
--- a/debian/compat
+++ /dev/null
@@ -1 +0,0 @@
-10
diff --git a/debian/control b/debian/control
deleted file mode 100644
index ef45c28..0000000
--- a/debian/control
+++ /dev/null
@@ -1,62 +0,0 @@
-Source: plato
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Steffen Moeller <moeller at debian.org>
-Section: science
-Priority: optional
-Build-Depends: debhelper (>= 10),
- libboost-dev
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/plato/trunk
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/plato/trunk/
-Homepage: https://ritchielab.psu.edu/plato
-
-Package: plato
-Architecture: any
-Depends: ${shlibs:Depends},
- ${misc:Depends}
-Description: Analysis, translation, and organization of large-scale genetic data
- PLATO is an acronym for "PLatform for the Analysis, Translation,
- and Organization of large-scale data". Recent technological advances
- enable the study of hundreds of thousands of human single-nucleotide
- polymorphisms at the population level. Because strategies for analyzing
- these data have not kept pace with the laboratory methods that generate
- the data, it is unlikely that these advances will immediately lead to
- an improved understanding of the genetic contribution to common human
- disease and drug response. Currently, no single analytical method
- allows us to extract all available information from a whole-genome
- association study. In fact, no single method can be optimal for all
- datasets, especially when the genetic architecture for diseases can
- vary substantially, as is certainly the case. Therefore, an integrative
- platform is needed to accommodate multiple analytical methods for
- analysis as we learn more about genetic architecture. As a result,
- we are developing a system for the analysis of genome-wide association
- data that will incorporate several analytical approaches as filters to
- allow a scientist to choose whatever analytical methods they wish to
- apply. PLATO (PLatform for the Analysis, Translation, and Organization
- of large-scale data) will incorporate a number of filters to select
- the important SNPs in a genome-wide association study.
- .
- Whole-genome Association Study Pipeline (WASP) has recently been
- absorbed into PLATO. WASP was designed to aid in retrieving, evaluating,
- formatting, and analyzing genotypic and clinical data from the latest
- large-scale genotyping studies. WASP implements a battery of quality
- control procedures to assess the data. Among the currently available
- procedures are the examination of marker and sample genotyping
- efficiency, allele frequency calculations, checks of Mendelian error
- (if applicable) and gender discrepancies (based on available chromosome X
- and Y genotypes), and tests of Hardy-Weinberg Equilibrium. Additionally,
- WASP can retrieve and format data for other software programs such as the
- Graphical Representation of Relationships (GRR) program, or STRUCTURE,
- and depending on the nature of the samples and the depth of examination
- the user desires to pursue. Beyond the quality control aspect of this
- application, WASP can perform standard tests of association using the
- Transmission Disequilibrium Test TDT for family-based datasets and the
- chi-square test of association for case-control datasets.
-
-Package: plato-dbg
-Architecture: any
-Depends: ${misc:Depends},
- plato (= ${binary:Version})
-Description: debug information for plato
- plato is dominate by a single binary. This package adds debug
- symbols to it.
diff --git a/debian/copyright b/debian/copyright
deleted file mode 100644
index a2827a6..0000000
--- a/debian/copyright
+++ /dev/null
@@ -1,25 +0,0 @@
-Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: plato
-Source: https://ritchielab.psu.edu/plato
-
-Files: *
-Copyright: 2008-2016 Marylyn Ritchie and others
-License: GPL-2+
-
-Files: debian/*
-Copyright: 2011 Steffen Moeller <moeller at debian.org>
-License: GPL-2+
-
-License: GPL-2+
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation; either version 2 of the License, or
- (at your option) any later version.
- .
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
- .
- On Debian systems, the complete text of the GNU General
- Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
diff --git a/debian/plato.install b/debian/plato.install
deleted file mode 100644
index 642031b..0000000
--- a/debian/plato.install
+++ /dev/null
@@ -1 +0,0 @@
-plato usr/bin
diff --git a/debian/rules b/debian/rules
deleted file mode 100755
index fcfc3e8..0000000
--- a/debian/rules
+++ /dev/null
@@ -1,13 +0,0 @@
-#!/usr/bin/make -f
-
-# Uncomment this to turn on verbose mode.
-export DH_VERBOSE=1
-
-%:
- dh $@
-
-override_dh_auto_test:
- # do not test, missing cdblib.h
-
-get-orig-source:
- echo "Download latest version from https://ritchielab.psu.edu/plato"
diff --git a/debian/source/format b/debian/source/format
deleted file mode 100644
index 163aaf8..0000000
--- a/debian/source/format
+++ /dev/null
@@ -1 +0,0 @@
-3.0 (quilt)
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
deleted file mode 100644
index 68638b5..0000000
--- a/debian/upstream/metadata
+++ /dev/null
@@ -1,10 +0,0 @@
-Reference:
- Author: "Benjamin J. Grady and Eric Torstenson and Scott M. Dudek and Justin Giles and David Sexton and Marylyn D. Ritchie"
- Title: "Finding unique filter sets in PLATO: a precursor to efficient interaction analysis in GWAS data"
- Journal: Proceedings of the Pacific Symposium
- Year: 2010
- Pages: 315-26
- DOI: 10.1142/9789814295291_0034
- PMID: 19908384
- URL: http://www.worldscientific.com/doi/abs/10.1142/9789814295291_0034
- eprint: http://www.worldscientific.com/doi/pdf/10.1142/9789814295291_0034
diff --git a/debian/watch b/debian/watch
deleted file mode 100644
index 3e4cb66..0000000
--- a/debian/watch
+++ /dev/null
@@ -1,7 +0,0 @@
-# FIXME: You need to add yourself to a subscriber list - surely no
-# download via watch file possible :-(
-
-
-version=4
-
-https://ritchielab.psu.edu/plato .*session.php.*file=plato-(\d[.\d]+)\.tar\.gz
diff --git a/depcomp b/depcomp
new file mode 100755
index 0000000..df8eea7
--- /dev/null
+++ b/depcomp
@@ -0,0 +1,630 @@
+#! /bin/sh
+# depcomp - compile a program generating dependencies as side-effects
+
+scriptversion=2009-04-28.21; # UTC
+
+# Copyright (C) 1999, 2000, 2003, 2004, 2005, 2006, 2007, 2009 Free
+# Software Foundation, Inc.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+# Originally written by Alexandre Oliva <oliva at dcc.unicamp.br>.
+
+case $1 in
+ '')
+ echo "$0: No command. Try \`$0 --help' for more information." 1>&2
+ exit 1;
+ ;;
+ -h | --h*)
+ cat <<\EOF
+Usage: depcomp [--help] [--version] PROGRAM [ARGS]
+
+Run PROGRAMS ARGS to compile a file, generating dependencies
+as side-effects.
+
+Environment variables:
+ depmode Dependency tracking mode.
+ source Source file read by `PROGRAMS ARGS'.
+ object Object file output by `PROGRAMS ARGS'.
+ DEPDIR directory where to store dependencies.
+ depfile Dependency file to output.
+ tmpdepfile Temporary file to use when outputing dependencies.
+ libtool Whether libtool is used (yes/no).
+
+Report bugs to <bug-automake at gnu.org>.
+EOF
+ exit $?
+ ;;
+ -v | --v*)
+ echo "depcomp $scriptversion"
+ exit $?
+ ;;
+esac
+
+if test -z "$depmode" || test -z "$source" || test -z "$object"; then
+ echo "depcomp: Variables source, object and depmode must be set" 1>&2
+ exit 1
+fi
+
+# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
+depfile=${depfile-`echo "$object" |
+ sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
+tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
+
+rm -f "$tmpdepfile"
+
+# Some modes work just like other modes, but use different flags. We
+# parameterize here, but still list the modes in the big case below,
+# to make depend.m4 easier to write. Note that we *cannot* use a case
+# here, because this file can only contain one case statement.
+if test "$depmode" = hp; then
+ # HP compiler uses -M and no extra arg.
+ gccflag=-M
+ depmode=gcc
+fi
+
+if test "$depmode" = dashXmstdout; then
+ # This is just like dashmstdout with a different argument.
+ dashmflag=-xM
+ depmode=dashmstdout
+fi
+
+cygpath_u="cygpath -u -f -"
+if test "$depmode" = msvcmsys; then
+ # This is just like msvisualcpp but w/o cygpath translation.
+ # Just convert the backslash-escaped backslashes to single forward
+ # slashes to satisfy depend.m4
+ cygpath_u="sed s,\\\\\\\\,/,g"
+ depmode=msvisualcpp
+fi
+
+case "$depmode" in
+gcc3)
+## gcc 3 implements dependency tracking that does exactly what
+## we want. Yay! Note: for some reason libtool 1.4 doesn't like
+## it if -MD -MP comes after the -MF stuff. Hmm.
+## Unfortunately, FreeBSD c89 acceptance of flags depends upon
+## the command line argument order; so add the flags where they
+## appear in depend2.am. Note that the slowdown incurred here
+## affects only configure: in makefiles, %FASTDEP% shortcuts this.
+ for arg
+ do
+ case $arg in
+ -c) set fnord "$@" -MT "$object" -MD -MP -MF "$tmpdepfile" "$arg" ;;
+ *) set fnord "$@" "$arg" ;;
+ esac
+ shift # fnord
+ shift # $arg
+ done
+ "$@"
+ stat=$?
+ if test $stat -eq 0; then :
+ else
+ rm -f "$tmpdepfile"
+ exit $stat
+ fi
+ mv "$tmpdepfile" "$depfile"
+ ;;
+
+gcc)
+## There are various ways to get dependency output from gcc. Here's
+## why we pick this rather obscure method:
+## - Don't want to use -MD because we'd like the dependencies to end
+## up in a subdir. Having to rename by hand is ugly.
+## (We might end up doing this anyway to support other compilers.)
+## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
+## -MM, not -M (despite what the docs say).
+## - Using -M directly means running the compiler twice (even worse
+## than renaming).
+ if test -z "$gccflag"; then
+ gccflag=-MD,
+ fi
+ "$@" -Wp,"$gccflag$tmpdepfile"
+ stat=$?
+ if test $stat -eq 0; then :
+ else
+ rm -f "$tmpdepfile"
+ exit $stat
+ fi
+ rm -f "$depfile"
+ echo "$object : \\" > "$depfile"
+ alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
+## The second -e expression handles DOS-style file names with drive letters.
+ sed -e 's/^[^:]*: / /' \
+ -e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
+## This next piece of magic avoids the `deleted header file' problem.
+## The problem is that when a header file which appears in a .P file
+## is deleted, the dependency causes make to die (because there is
+## typically no way to rebuild the header). We avoid this by adding
+## dummy dependencies for each header file. Too bad gcc doesn't do
+## this for us directly.
+ tr ' ' '
+' < "$tmpdepfile" |
+## Some versions of gcc put a space before the `:'. On the theory
+## that the space means something, we add a space to the output as
+## well.
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly. Breaking it into two sed invocations is a workaround.
+ sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+ rm -f "$tmpdepfile"
+ ;;
+
+hp)
+ # This case exists only to let depend.m4 do its work. It works by
+ # looking at the text of this script. This case will never be run,
+ # since it is checked for above.
+ exit 1
+ ;;
+
+sgi)
+ if test "$libtool" = yes; then
+ "$@" "-Wp,-MDupdate,$tmpdepfile"
+ else
+ "$@" -MDupdate "$tmpdepfile"
+ fi
+ stat=$?
+ if test $stat -eq 0; then :
+ else
+ rm -f "$tmpdepfile"
+ exit $stat
+ fi
+ rm -f "$depfile"
+
+ if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files
+ echo "$object : \\" > "$depfile"
+
+ # Clip off the initial element (the dependent). Don't try to be
+ # clever and replace this with sed code, as IRIX sed won't handle
+ # lines with more than a fixed number of characters (4096 in
+ # IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines;
+ # the IRIX cc adds comments like `#:fec' to the end of the
+ # dependency line.
+ tr ' ' '
+' < "$tmpdepfile" \
+ | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
+ tr '
+' ' ' >> "$depfile"
+ echo >> "$depfile"
+
+ # The second pass generates a dummy entry for each header file.
+ tr ' ' '
+' < "$tmpdepfile" \
+ | sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
+ >> "$depfile"
+ else
+ # The sourcefile does not contain any dependencies, so just
+ # store a dummy comment line, to avoid errors with the Makefile
+ # "include basename.Plo" scheme.
+ echo "#dummy" > "$depfile"
+ fi
+ rm -f "$tmpdepfile"
+ ;;
+
+aix)
+ # The C for AIX Compiler uses -M and outputs the dependencies
+ # in a .u file. In older versions, this file always lives in the
+ # current directory. Also, the AIX compiler puts `$object:' at the
+ # start of each line; $object doesn't have directory information.
+ # Version 6 uses the directory in both cases.
+ dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
+ test "x$dir" = "x$object" && dir=
+ base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
+ if test "$libtool" = yes; then
+ tmpdepfile1=$dir$base.u
+ tmpdepfile2=$base.u
+ tmpdepfile3=$dir.libs/$base.u
+ "$@" -Wc,-M
+ else
+ tmpdepfile1=$dir$base.u
+ tmpdepfile2=$dir$base.u
+ tmpdepfile3=$dir$base.u
+ "$@" -M
+ fi
+ stat=$?
+
+ if test $stat -eq 0; then :
+ else
+ rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+ exit $stat
+ fi
+
+ for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3"
+ do
+ test -f "$tmpdepfile" && break
+ done
+ if test -f "$tmpdepfile"; then
+ # Each line is of the form `foo.o: dependent.h'.
+ # Do two passes, one to just change these to
+ # `$object: dependent.h' and one to simply `dependent.h:'.
+ sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
+ # That's a tab and a space in the [].
+ sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
+ else
+ # The sourcefile does not contain any dependencies, so just
+ # store a dummy comment line, to avoid errors with the Makefile
+ # "include basename.Plo" scheme.
+ echo "#dummy" > "$depfile"
+ fi
+ rm -f "$tmpdepfile"
+ ;;
+
+icc)
+ # Intel's C compiler understands `-MD -MF file'. However on
+ # icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
+ # ICC 7.0 will fill foo.d with something like
+ # foo.o: sub/foo.c
+ # foo.o: sub/foo.h
+ # which is wrong. We want:
+ # sub/foo.o: sub/foo.c
+ # sub/foo.o: sub/foo.h
+ # sub/foo.c:
+ # sub/foo.h:
+ # ICC 7.1 will output
+ # foo.o: sub/foo.c sub/foo.h
+ # and will wrap long lines using \ :
+ # foo.o: sub/foo.c ... \
+ # sub/foo.h ... \
+ # ...
+
+ "$@" -MD -MF "$tmpdepfile"
+ stat=$?
+ if test $stat -eq 0; then :
+ else
+ rm -f "$tmpdepfile"
+ exit $stat
+ fi
+ rm -f "$depfile"
+ # Each line is of the form `foo.o: dependent.h',
+ # or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
+ # Do two passes, one to just change these to
+ # `$object: dependent.h' and one to simply `dependent.h:'.
+ sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
+ # Some versions of the HPUX 10.20 sed can't process this invocation
+ # correctly. Breaking it into two sed invocations is a workaround.
+ sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
+ sed -e 's/$/ :/' >> "$depfile"
+ rm -f "$tmpdepfile"
+ ;;
+
+hp2)
+ # The "hp" stanza above does not work with aCC (C++) and HP's ia64
+ # compilers, which have integrated preprocessors. The correct option
+ # to use with these is +Maked; it writes dependencies to a file named
+ # 'foo.d', which lands next to the object file, wherever that
+ # happens to be.
+ # Much of this is similar to the tru64 case; see comments there.
+ dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
+ test "x$dir" = "x$object" && dir=
+ base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
+ if test "$libtool" = yes; then
+ tmpdepfile1=$dir$base.d
+ tmpdepfile2=$dir.libs/$base.d
+ "$@" -Wc,+Maked
+ else
+ tmpdepfile1=$dir$base.d
+ tmpdepfile2=$dir$base.d
+ "$@" +Maked
+ fi
+ stat=$?
+ if test $stat -eq 0; then :
+ else
+ rm -f "$tmpdepfile1" "$tmpdepfile2"
+ exit $stat
+ fi
+
+ for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2"
+ do
+ test -f "$tmpdepfile" && break
+ done
+ if test -f "$tmpdepfile"; then
+ sed -e "s,^.*\.[a-z]*:,$object:," "$tmpdepfile" > "$depfile"
+ # Add `dependent.h:' lines.
+ sed -ne '2,${
+ s/^ *//
+ s/ \\*$//
+ s/$/:/
+ p
+ }' "$tmpdepfile" >> "$depfile"
+ else
+ echo "#dummy" > "$depfile"
+ fi
+ rm -f "$tmpdepfile" "$tmpdepfile2"
+ ;;
+
+tru64)
+ # The Tru64 compiler uses -MD to generate dependencies as a side
+ # effect. `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
+ # At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
+ # dependencies in `foo.d' instead, so we check for that too.
+ # Subdirectories are respected.
+ dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
+ test "x$dir" = "x$object" && dir=
+ base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
+
+ if test "$libtool" = yes; then
+ # With Tru64 cc, shared objects can also be used to make a
+ # static library. This mechanism is used in libtool 1.4 series to
+ # handle both shared and static libraries in a single compilation.
+ # With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
+ #
+ # With libtool 1.5 this exception was removed, and libtool now
+ # generates 2 separate objects for the 2 libraries. These two
+ # compilations output dependencies in $dir.libs/$base.o.d and
+ # in $dir$base.o.d. We have to check for both files, because
+ # one of the two compilations can be disabled. We should prefer
+ # $dir$base.o.d over $dir.libs/$base.o.d because the latter is
+ # automatically cleaned when .libs/ is deleted, while ignoring
+ # the former would cause a distcleancheck panic.
+ tmpdepfile1=$dir.libs/$base.lo.d # libtool 1.4
+ tmpdepfile2=$dir$base.o.d # libtool 1.5
+ tmpdepfile3=$dir.libs/$base.o.d # libtool 1.5
+ tmpdepfile4=$dir.libs/$base.d # Compaq CCC V6.2-504
+ "$@" -Wc,-MD
+ else
+ tmpdepfile1=$dir$base.o.d
+ tmpdepfile2=$dir$base.d
+ tmpdepfile3=$dir$base.d
+ tmpdepfile4=$dir$base.d
+ "$@" -MD
+ fi
+
+ stat=$?
+ if test $stat -eq 0; then :
+ else
+ rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
+ exit $stat
+ fi
+
+ for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
+ do
+ test -f "$tmpdepfile" && break
+ done
+ if test -f "$tmpdepfile"; then
+ sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
+ # That's a tab and a space in the [].
+ sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
+ else
+ echo "#dummy" > "$depfile"
+ fi
+ rm -f "$tmpdepfile"
+ ;;
+
+#nosideeffect)
+ # This comment above is used by automake to tell side-effect
+ # dependency tracking mechanisms from slower ones.
+
+dashmstdout)
+ # Important note: in order to support this mode, a compiler *must*
+ # always write the preprocessed file to stdout, regardless of -o.
+ "$@" || exit $?
+
+ # Remove the call to Libtool.
+ if test "$libtool" = yes; then
+ while test "X$1" != 'X--mode=compile'; do
+ shift
+ done
+ shift
+ fi
+
+ # Remove `-o $object'.
+ IFS=" "
+ for arg
+ do
+ case $arg in
+ -o)
+ shift
+ ;;
+ $object)
+ shift
+ ;;
+ *)
+ set fnord "$@" "$arg"
+ shift # fnord
+ shift # $arg
+ ;;
+ esac
+ done
+
+ test -z "$dashmflag" && dashmflag=-M
+ # Require at least two characters before searching for `:'
+ # in the target name. This is to cope with DOS-style filenames:
+ # a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
+ "$@" $dashmflag |
+ sed 's:^[ ]*[^: ][^:][^:]*\:[ ]*:'"$object"'\: :' > "$tmpdepfile"
+ rm -f "$depfile"
+ cat < "$tmpdepfile" > "$depfile"
+ tr ' ' '
+' < "$tmpdepfile" | \
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly. Breaking it into two sed invocations is a workaround.
+ sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+ rm -f "$tmpdepfile"
+ ;;
+
+dashXmstdout)
+ # This case only exists to satisfy depend.m4. It is never actually
+ # run, as this mode is specially recognized in the preamble.
+ exit 1
+ ;;
+
+makedepend)
+ "$@" || exit $?
+ # Remove any Libtool call
+ if test "$libtool" = yes; then
+ while test "X$1" != 'X--mode=compile'; do
+ shift
+ done
+ shift
+ fi
+ # X makedepend
+ shift
+ cleared=no eat=no
+ for arg
+ do
+ case $cleared in
+ no)
+ set ""; shift
+ cleared=yes ;;
+ esac
+ if test $eat = yes; then
+ eat=no
+ continue
+ fi
+ case "$arg" in
+ -D*|-I*)
+ set fnord "$@" "$arg"; shift ;;
+ # Strip any option that makedepend may not understand. Remove
+ # the object too, otherwise makedepend will parse it as a source file.
+ -arch)
+ eat=yes ;;
+ -*|$object)
+ ;;
+ *)
+ set fnord "$@" "$arg"; shift ;;
+ esac
+ done
+ obj_suffix=`echo "$object" | sed 's/^.*\././'`
+ touch "$tmpdepfile"
+ ${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
+ rm -f "$depfile"
+ cat < "$tmpdepfile" > "$depfile"
+ sed '1,2d' "$tmpdepfile" | tr ' ' '
+' | \
+## Some versions of the HPUX 10.20 sed can't process this invocation
+## correctly. Breaking it into two sed invocations is a workaround.
+ sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
+ rm -f "$tmpdepfile" "$tmpdepfile".bak
+ ;;
+
+cpp)
+ # Important note: in order to support this mode, a compiler *must*
+ # always write the preprocessed file to stdout.
+ "$@" || exit $?
+
+ # Remove the call to Libtool.
+ if test "$libtool" = yes; then
+ while test "X$1" != 'X--mode=compile'; do
+ shift
+ done
+ shift
+ fi
+
+ # Remove `-o $object'.
+ IFS=" "
+ for arg
+ do
+ case $arg in
+ -o)
+ shift
+ ;;
+ $object)
+ shift
+ ;;
+ *)
+ set fnord "$@" "$arg"
+ shift # fnord
+ shift # $arg
+ ;;
+ esac
+ done
+
+ "$@" -E |
+ sed -n -e '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' \
+ -e '/^#line [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
+ sed '$ s: \\$::' > "$tmpdepfile"
+ rm -f "$depfile"
+ echo "$object : \\" > "$depfile"
+ cat < "$tmpdepfile" >> "$depfile"
+ sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
+ rm -f "$tmpdepfile"
+ ;;
+
+msvisualcpp)
+ # Important note: in order to support this mode, a compiler *must*
+ # always write the preprocessed file to stdout.
+ "$@" || exit $?
+
+ # Remove the call to Libtool.
+ if test "$libtool" = yes; then
+ while test "X$1" != 'X--mode=compile'; do
+ shift
+ done
+ shift
+ fi
+
+ IFS=" "
+ for arg
+ do
+ case "$arg" in
+ -o)
+ shift
+ ;;
+ $object)
+ shift
+ ;;
+ "-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
+ set fnord "$@"
+ shift
+ shift
+ ;;
+ *)
+ set fnord "$@" "$arg"
+ shift
+ shift
+ ;;
+ esac
+ done
+ "$@" -E 2>/dev/null |
+ sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::\1:p' | $cygpath_u | sort -u > "$tmpdepfile"
+ rm -f "$depfile"
+ echo "$object : \\" > "$depfile"
+ sed < "$tmpdepfile" -n -e 's% %\\ %g' -e '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile"
+ echo " " >> "$depfile"
+ sed < "$tmpdepfile" -n -e 's% %\\ %g' -e '/^\(.*\)$/ s::\1\::p' >> "$depfile"
+ rm -f "$tmpdepfile"
+ ;;
+
+msvcmsys)
+ # This case exists only to let depend.m4 do its work. It works by
+ # looking at the text of this script. This case will never be run,
+ # since it is checked for above.
+ exit 1
+ ;;
+
+none)
+ exec "$@"
+ ;;
+
+*)
+ echo "Unknown depmode $depmode" 1>&2
+ exit 1
+ ;;
+esac
+
+exit 0
+
+# Local Variables:
+# mode: shell-script
+# sh-indentation: 2
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:
diff --git a/doc/MPI_API.odt b/doc/MPI_API.odt
new file mode 100644
index 0000000..4fba83e
Binary files /dev/null and b/doc/MPI_API.odt differ
diff --git a/doc/manual.odt b/doc/manual.odt
new file mode 100644
index 0000000..4005d84
Binary files /dev/null and b/doc/manual.odt differ
diff --git a/install-sh b/install-sh
new file mode 100755
index 0000000..6781b98
--- /dev/null
+++ b/install-sh
@@ -0,0 +1,520 @@
+#!/bin/sh
+# install - install a program, script, or datafile
+
+scriptversion=2009-04-28.21; # UTC
+
+# This originates from X11R5 (mit/util/scripts/install.sh), which was
+# later released in X11R6 (xc/config/util/install.sh) with the
+# following copyright and license.
+#
+# Copyright (C) 1994 X Consortium
+#
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to
+# deal in the Software without restriction, including without limitation the
+# rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
+# sell copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+#
+# The above copyright notice and this permission notice shall be included in
+# all copies or substantial portions of the Software.
+#
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN
+# AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC-
+# TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+#
+# Except as contained in this notice, the name of the X Consortium shall not
+# be used in advertising or otherwise to promote the sale, use or other deal-
+# ings in this Software without prior written authorization from the X Consor-
+# tium.
+#
+#
+# FSF changes to this file are in the public domain.
+#
+# Calling this script install-sh is preferred over install.sh, to prevent
+# `make' implicit rules from creating a file called install from it
+# when there is no Makefile.
+#
+# This script is compatible with the BSD install script, but was written
+# from scratch.
+
+nl='
+'
+IFS=" "" $nl"
+
+# set DOITPROG to echo to test this script
+
+# Don't use :- since 4.3BSD and earlier shells don't like it.
+doit=${DOITPROG-}
+if test -z "$doit"; then
+ doit_exec=exec
+else
+ doit_exec=$doit
+fi
+
+# Put in absolute file names if you don't have them in your path;
+# or use environment vars.
+
+chgrpprog=${CHGRPPROG-chgrp}
+chmodprog=${CHMODPROG-chmod}
+chownprog=${CHOWNPROG-chown}
+cmpprog=${CMPPROG-cmp}
+cpprog=${CPPROG-cp}
+mkdirprog=${MKDIRPROG-mkdir}
+mvprog=${MVPROG-mv}
+rmprog=${RMPROG-rm}
+stripprog=${STRIPPROG-strip}
+
+posix_glob='?'
+initialize_posix_glob='
+ test "$posix_glob" != "?" || {
+ if (set -f) 2>/dev/null; then
+ posix_glob=
+ else
+ posix_glob=:
+ fi
+ }
+'
+
+posix_mkdir=
+
+# Desired mode of installed file.
+mode=0755
+
+chgrpcmd=
+chmodcmd=$chmodprog
+chowncmd=
+mvcmd=$mvprog
+rmcmd="$rmprog -f"
+stripcmd=
+
+src=
+dst=
+dir_arg=
+dst_arg=
+
+copy_on_change=false
+no_target_directory=
+
+usage="\
+Usage: $0 [OPTION]... [-T] SRCFILE DSTFILE
+ or: $0 [OPTION]... SRCFILES... DIRECTORY
+ or: $0 [OPTION]... -t DIRECTORY SRCFILES...
+ or: $0 [OPTION]... -d DIRECTORIES...
+
+In the 1st form, copy SRCFILE to DSTFILE.
+In the 2nd and 3rd, copy all SRCFILES to DIRECTORY.
+In the 4th, create DIRECTORIES.
+
+Options:
+ --help display this help and exit.
+ --version display version info and exit.
+
+ -c (ignored)
+ -C install only if different (preserve the last data modification time)
+ -d create directories instead of installing files.
+ -g GROUP $chgrpprog installed files to GROUP.
+ -m MODE $chmodprog installed files to MODE.
+ -o USER $chownprog installed files to USER.
+ -s $stripprog installed files.
+ -t DIRECTORY install into DIRECTORY.
+ -T report an error if DSTFILE is a directory.
+
+Environment variables override the default commands:
+ CHGRPPROG CHMODPROG CHOWNPROG CMPPROG CPPROG MKDIRPROG MVPROG
+ RMPROG STRIPPROG
+"
+
+while test $# -ne 0; do
+ case $1 in
+ -c) ;;
+
+ -C) copy_on_change=true;;
+
+ -d) dir_arg=true;;
+
+ -g) chgrpcmd="$chgrpprog $2"
+ shift;;
+
+ --help) echo "$usage"; exit $?;;
+
+ -m) mode=$2
+ case $mode in
+ *' '* | *' '* | *'
+'* | *'*'* | *'?'* | *'['*)
+ echo "$0: invalid mode: $mode" >&2
+ exit 1;;
+ esac
+ shift;;
+
+ -o) chowncmd="$chownprog $2"
+ shift;;
+
+ -s) stripcmd=$stripprog;;
+
+ -t) dst_arg=$2
+ shift;;
+
+ -T) no_target_directory=true;;
+
+ --version) echo "$0 $scriptversion"; exit $?;;
+
+ --) shift
+ break;;
+
+ -*) echo "$0: invalid option: $1" >&2
+ exit 1;;
+
+ *) break;;
+ esac
+ shift
+done
+
+if test $# -ne 0 && test -z "$dir_arg$dst_arg"; then
+ # When -d is used, all remaining arguments are directories to create.
+ # When -t is used, the destination is already specified.
+ # Otherwise, the last argument is the destination. Remove it from $@.
+ for arg
+ do
+ if test -n "$dst_arg"; then
+ # $@ is not empty: it contains at least $arg.
+ set fnord "$@" "$dst_arg"
+ shift # fnord
+ fi
+ shift # arg
+ dst_arg=$arg
+ done
+fi
+
+if test $# -eq 0; then
+ if test -z "$dir_arg"; then
+ echo "$0: no input file specified." >&2
+ exit 1
+ fi
+ # It's OK to call `install-sh -d' without argument.
+ # This can happen when creating conditional directories.
+ exit 0
+fi
+
+if test -z "$dir_arg"; then
+ trap '(exit $?); exit' 1 2 13 15
+
+ # Set umask so as not to create temps with too-generous modes.
+ # However, 'strip' requires both read and write access to temps.
+ case $mode in
+ # Optimize common cases.
+ *644) cp_umask=133;;
+ *755) cp_umask=22;;
+
+ *[0-7])
+ if test -z "$stripcmd"; then
+ u_plus_rw=
+ else
+ u_plus_rw='% 200'
+ fi
+ cp_umask=`expr '(' 777 - $mode % 1000 ')' $u_plus_rw`;;
+ *)
+ if test -z "$stripcmd"; then
+ u_plus_rw=
+ else
+ u_plus_rw=,u+rw
+ fi
+ cp_umask=$mode$u_plus_rw;;
+ esac
+fi
+
+for src
+do
+ # Protect names starting with `-'.
+ case $src in
+ -*) src=./$src;;
+ esac
+
+ if test -n "$dir_arg"; then
+ dst=$src
+ dstdir=$dst
+ test -d "$dstdir"
+ dstdir_status=$?
+ else
+
+ # Waiting for this to be detected by the "$cpprog $src $dsttmp" command
+ # might cause directories to be created, which would be especially bad
+ # if $src (and thus $dsttmp) contains '*'.
+ if test ! -f "$src" && test ! -d "$src"; then
+ echo "$0: $src does not exist." >&2
+ exit 1
+ fi
+
+ if test -z "$dst_arg"; then
+ echo "$0: no destination specified." >&2
+ exit 1
+ fi
+
+ dst=$dst_arg
+ # Protect names starting with `-'.
+ case $dst in
+ -*) dst=./$dst;;
+ esac
+
+ # If destination is a directory, append the input filename; won't work
+ # if double slashes aren't ignored.
+ if test -d "$dst"; then
+ if test -n "$no_target_directory"; then
+ echo "$0: $dst_arg: Is a directory" >&2
+ exit 1
+ fi
+ dstdir=$dst
+ dst=$dstdir/`basename "$src"`
+ dstdir_status=0
+ else
+ # Prefer dirname, but fall back on a substitute if dirname fails.
+ dstdir=`
+ (dirname "$dst") 2>/dev/null ||
+ expr X"$dst" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
+ X"$dst" : 'X\(//\)[^/]' \| \
+ X"$dst" : 'X\(//\)$' \| \
+ X"$dst" : 'X\(/\)' \| . 2>/dev/null ||
+ echo X"$dst" |
+ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)[^/].*/{
+ s//\1/
+ q
+ }
+ /^X\(\/\/\)$/{
+ s//\1/
+ q
+ }
+ /^X\(\/\).*/{
+ s//\1/
+ q
+ }
+ s/.*/./; q'
+ `
+
+ test -d "$dstdir"
+ dstdir_status=$?
+ fi
+ fi
+
+ obsolete_mkdir_used=false
+
+ if test $dstdir_status != 0; then
+ case $posix_mkdir in
+ '')
+ # Create intermediate dirs using mode 755 as modified by the umask.
+ # This is like FreeBSD 'install' as of 1997-10-28.
+ umask=`umask`
+ case $stripcmd.$umask in
+ # Optimize common cases.
+ *[2367][2367]) mkdir_umask=$umask;;
+ .*0[02][02] | .[02][02] | .[02]) mkdir_umask=22;;
+
+ *[0-7])
+ mkdir_umask=`expr $umask + 22 \
+ - $umask % 100 % 40 + $umask % 20 \
+ - $umask % 10 % 4 + $umask % 2
+ `;;
+ *) mkdir_umask=$umask,go-w;;
+ esac
+
+ # With -d, create the new directory with the user-specified mode.
+ # Otherwise, rely on $mkdir_umask.
+ if test -n "$dir_arg"; then
+ mkdir_mode=-m$mode
+ else
+ mkdir_mode=
+ fi
+
+ posix_mkdir=false
+ case $umask in
+ *[123567][0-7][0-7])
+ # POSIX mkdir -p sets u+wx bits regardless of umask, which
+ # is incompatible with FreeBSD 'install' when (umask & 300) != 0.
+ ;;
+ *)
+ tmpdir=${TMPDIR-/tmp}/ins$RANDOM-$$
+ trap 'ret=$?; rmdir "$tmpdir/d" "$tmpdir" 2>/dev/null; exit $ret' 0
+
+ if (umask $mkdir_umask &&
+ exec $mkdirprog $mkdir_mode -p -- "$tmpdir/d") >/dev/null 2>&1
+ then
+ if test -z "$dir_arg" || {
+ # Check for POSIX incompatibilities with -m.
+ # HP-UX 11.23 and IRIX 6.5 mkdir -m -p sets group- or
+ # other-writeable bit of parent directory when it shouldn't.
+ # FreeBSD 6.1 mkdir -m -p sets mode of existing directory.
+ ls_ld_tmpdir=`ls -ld "$tmpdir"`
+ case $ls_ld_tmpdir in
+ d????-?r-*) different_mode=700;;
+ d????-?--*) different_mode=755;;
+ *) false;;
+ esac &&
+ $mkdirprog -m$different_mode -p -- "$tmpdir" && {
+ ls_ld_tmpdir_1=`ls -ld "$tmpdir"`
+ test "$ls_ld_tmpdir" = "$ls_ld_tmpdir_1"
+ }
+ }
+ then posix_mkdir=:
+ fi
+ rmdir "$tmpdir/d" "$tmpdir"
+ else
+ # Remove any dirs left behind by ancient mkdir implementations.
+ rmdir ./$mkdir_mode ./-p ./-- 2>/dev/null
+ fi
+ trap '' 0;;
+ esac;;
+ esac
+
+ if
+ $posix_mkdir && (
+ umask $mkdir_umask &&
+ $doit_exec $mkdirprog $mkdir_mode -p -- "$dstdir"
+ )
+ then :
+ else
+
+ # The umask is ridiculous, or mkdir does not conform to POSIX,
+ # or it failed possibly due to a race condition. Create the
+ # directory the slow way, step by step, checking for races as we go.
+
+ case $dstdir in
+ /*) prefix='/';;
+ -*) prefix='./';;
+ *) prefix='';;
+ esac
+
+ eval "$initialize_posix_glob"
+
+ oIFS=$IFS
+ IFS=/
+ $posix_glob set -f
+ set fnord $dstdir
+ shift
+ $posix_glob set +f
+ IFS=$oIFS
+
+ prefixes=
+
+ for d
+ do
+ test -z "$d" && continue
+
+ prefix=$prefix$d
+ if test -d "$prefix"; then
+ prefixes=
+ else
+ if $posix_mkdir; then
+ (umask=$mkdir_umask &&
+ $doit_exec $mkdirprog $mkdir_mode -p -- "$dstdir") && break
+ # Don't fail if two instances are running concurrently.
+ test -d "$prefix" || exit 1
+ else
+ case $prefix in
+ *\'*) qprefix=`echo "$prefix" | sed "s/'/'\\\\\\\\''/g"`;;
+ *) qprefix=$prefix;;
+ esac
+ prefixes="$prefixes '$qprefix'"
+ fi
+ fi
+ prefix=$prefix/
+ done
+
+ if test -n "$prefixes"; then
+ # Don't fail if two instances are running concurrently.
+ (umask $mkdir_umask &&
+ eval "\$doit_exec \$mkdirprog $prefixes") ||
+ test -d "$dstdir" || exit 1
+ obsolete_mkdir_used=true
+ fi
+ fi
+ fi
+
+ if test -n "$dir_arg"; then
+ { test -z "$chowncmd" || $doit $chowncmd "$dst"; } &&
+ { test -z "$chgrpcmd" || $doit $chgrpcmd "$dst"; } &&
+ { test "$obsolete_mkdir_used$chowncmd$chgrpcmd" = false ||
+ test -z "$chmodcmd" || $doit $chmodcmd $mode "$dst"; } || exit 1
+ else
+
+ # Make a couple of temp file names in the proper directory.
+ dsttmp=$dstdir/_inst.$$_
+ rmtmp=$dstdir/_rm.$$_
+
+ # Trap to clean up those temp files at exit.
+ trap 'ret=$?; rm -f "$dsttmp" "$rmtmp" && exit $ret' 0
+
+ # Copy the file name to the temp name.
+ (umask $cp_umask && $doit_exec $cpprog "$src" "$dsttmp") &&
+
+ # and set any options; do chmod last to preserve setuid bits.
+ #
+ # If any of these fail, we abort the whole thing. If we want to
+ # ignore errors from any of these, just make sure not to ignore
+ # errors from the above "$doit $cpprog $src $dsttmp" command.
+ #
+ { test -z "$chowncmd" || $doit $chowncmd "$dsttmp"; } &&
+ { test -z "$chgrpcmd" || $doit $chgrpcmd "$dsttmp"; } &&
+ { test -z "$stripcmd" || $doit $stripcmd "$dsttmp"; } &&
+ { test -z "$chmodcmd" || $doit $chmodcmd $mode "$dsttmp"; } &&
+
+ # If -C, don't bother to copy if it wouldn't change the file.
+ if $copy_on_change &&
+ old=`LC_ALL=C ls -dlL "$dst" 2>/dev/null` &&
+ new=`LC_ALL=C ls -dlL "$dsttmp" 2>/dev/null` &&
+
+ eval "$initialize_posix_glob" &&
+ $posix_glob set -f &&
+ set X $old && old=:$2:$4:$5:$6 &&
+ set X $new && new=:$2:$4:$5:$6 &&
+ $posix_glob set +f &&
+
+ test "$old" = "$new" &&
+ $cmpprog "$dst" "$dsttmp" >/dev/null 2>&1
+ then
+ rm -f "$dsttmp"
+ else
+ # Rename the file to the real destination.
+ $doit $mvcmd -f "$dsttmp" "$dst" 2>/dev/null ||
+
+ # The rename failed, perhaps because mv can't rename something else
+ # to itself, or perhaps because mv is so ancient that it does not
+ # support -f.
+ {
+ # Now remove or move aside any old file at destination location.
+ # We try this two ways since rm can't unlink itself on some
+ # systems and the destination file might be busy for other
+ # reasons. In this case, the final cleanup might fail but the new
+ # file should still install successfully.
+ {
+ test ! -f "$dst" ||
+ $doit $rmcmd -f "$dst" 2>/dev/null ||
+ { $doit $mvcmd -f "$dst" "$rmtmp" 2>/dev/null &&
+ { $doit $rmcmd -f "$rmtmp" 2>/dev/null; :; }
+ } ||
+ { echo "$0: cannot unlink or rename $dst" >&2
+ (exit 1); exit 1
+ }
+ } &&
+
+ # Now rename the file to the real destination.
+ $doit $mvcmd "$dsttmp" "$dst"
+ }
+ fi || exit 1
+
+ trap '' 0
+ fi
+done
+
+# Local variables:
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:
diff --git a/ltmain.sh b/ltmain.sh
new file mode 100755
index 0000000..a72f2fd
--- /dev/null
+++ b/ltmain.sh
@@ -0,0 +1,8406 @@
+# Generated from ltmain.m4sh.
+
+# ltmain.sh (GNU libtool) 2.2.6b
+# Written by Gordon Matzigkeit <gord at gnu.ai.mit.edu>, 1996
+
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005, 2006, 2007 2008 Free Software Foundation, Inc.
+# This is free software; see the source for copying conditions. There is NO
+# warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+
+# GNU Libtool is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# As a special exception to the GNU General Public License,
+# if you distribute this file as part of a program or library that
+# is built using GNU Libtool, you may include this file under the
+# same distribution terms that you use for the rest of that program.
+#
+# GNU Libtool is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with GNU Libtool; see the file COPYING. If not, a copy
+# can be downloaded from http://www.gnu.org/licenses/gpl.html,
+# or obtained by writing to the Free Software Foundation, Inc.,
+# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+
+# Usage: $progname [OPTION]... [MODE-ARG]...
+#
+# Provide generalized library-building support services.
+#
+# --config show all configuration variables
+# --debug enable verbose shell tracing
+# -n, --dry-run display commands without modifying any files
+# --features display basic configuration information and exit
+# --mode=MODE use operation mode MODE
+# --preserve-dup-deps don't remove duplicate dependency libraries
+# --quiet, --silent don't print informational messages
+# --tag=TAG use configuration variables from tag TAG
+# -v, --verbose print informational messages (default)
+# --version print version information
+# -h, --help print short or long help message
+#
+# MODE must be one of the following:
+#
+# clean remove files from the build directory
+# compile compile a source file into a libtool object
+# execute automatically set library path, then run a program
+# finish complete the installation of libtool libraries
+# install install libraries or executables
+# link create a library or an executable
+# uninstall remove libraries from an installed directory
+#
+# MODE-ARGS vary depending on the MODE.
+# Try `$progname --help --mode=MODE' for a more detailed description of MODE.
+#
+# When reporting a bug, please describe a test case to reproduce it and
+# include the following information:
+#
+# host-triplet: $host
+# shell: $SHELL
+# compiler: $LTCC
+# compiler flags: $LTCFLAGS
+# linker: $LD (gnu? $with_gnu_ld)
+# $progname: (GNU libtool) 2.2.6b
+# automake: $automake_version
+# autoconf: $autoconf_version
+#
+# Report bugs to <bug-libtool at gnu.org>.
+
+PROGRAM=ltmain.sh
+PACKAGE=libtool
+VERSION=2.2.6b
+TIMESTAMP=""
+package_revision=1.3017
+
+# Be Bourne compatible
+if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Zsh 3.x and 4.x performs word splitting on ${1+"$@"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '${1+"$@"}'='"$@"'
+ setopt NO_GLOB_SUBST
+else
+ case `(set -o) 2>/dev/null` in *posix*) set -o posix;; esac
+fi
+BIN_SH=xpg4; export BIN_SH # for Tru64
+DUALCASE=1; export DUALCASE # for MKS sh
+
+# NLS nuisances: We save the old values to restore during execute mode.
+# Only set LANG and LC_ALL to C if already set.
+# These must not be set unconditionally because not all systems understand
+# e.g. LANG=C (notably SCO).
+lt_user_locale=
+lt_safe_locale=
+for lt_var in LANG LANGUAGE LC_ALL LC_CTYPE LC_COLLATE LC_MESSAGES
+do
+ eval "if test \"\${$lt_var+set}\" = set; then
+ save_$lt_var=\$$lt_var
+ $lt_var=C
+ export $lt_var
+ lt_user_locale=\"$lt_var=\\\$save_\$lt_var; \$lt_user_locale\"
+ lt_safe_locale=\"$lt_var=C; \$lt_safe_locale\"
+ fi"
+done
+
+$lt_unset CDPATH
+
+
+
+
+
+: ${CP="cp -f"}
+: ${ECHO="echo"}
+: ${EGREP="/bin/grep -E"}
+: ${FGREP="/bin/grep -F"}
+: ${GREP="/bin/grep"}
+: ${LN_S="ln -s"}
+: ${MAKE="make"}
+: ${MKDIR="mkdir"}
+: ${MV="mv -f"}
+: ${RM="rm -f"}
+: ${SED="/bin/sed"}
+: ${SHELL="${CONFIG_SHELL-/bin/sh}"}
+: ${Xsed="$SED -e 1s/^X//"}
+
+# Global variables:
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+EXIT_MISMATCH=63 # $? = 63 is used to indicate version mismatch to missing.
+EXIT_SKIP=77 # $? = 77 is used to indicate a skipped test to automake.
+
+exit_status=$EXIT_SUCCESS
+
+# Make sure IFS has a sensible default
+lt_nl='
+'
+IFS=" $lt_nl"
+
+dirname="s,/[^/]*$,,"
+basename="s,^.*/,,"
+
+# func_dirname_and_basename file append nondir_replacement
+# perform func_basename and func_dirname in a single function
+# call:
+# dirname: Compute the dirname of FILE. If nonempty,
+# add APPEND to the result, otherwise set result
+# to NONDIR_REPLACEMENT.
+# value returned in "$func_dirname_result"
+# basename: Compute filename of FILE.
+# value retuned in "$func_basename_result"
+# Implementation must be kept synchronized with func_dirname
+# and func_basename. For efficiency, we do not delegate to
+# those functions but instead duplicate the functionality here.
+func_dirname_and_basename ()
+{
+ # Extract subdirectory from the argument.
+ func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"`
+ if test "X$func_dirname_result" = "X${1}"; then
+ func_dirname_result="${3}"
+ else
+ func_dirname_result="$func_dirname_result${2}"
+ fi
+ func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"`
+}
+
+# Generated shell functions inserted here.
+
+# Work around backward compatibility issue on IRIX 6.5. On IRIX 6.4+, sh
+# is ksh but when the shell is invoked as "sh" and the current value of
+# the _XPG environment variable is not equal to 1 (one), the special
+# positional parameter $0, within a function call, is the name of the
+# function.
+progpath="$0"
+
+# The name of this program:
+# In the unlikely event $progname began with a '-', it would play havoc with
+# func_echo (imagine progname=-n), so we prepend ./ in that case:
+func_dirname_and_basename "$progpath"
+progname=$func_basename_result
+case $progname in
+ -*) progname=./$progname ;;
+esac
+
+# Make sure we have an absolute path for reexecution:
+case $progpath in
+ [\\/]*|[A-Za-z]:\\*) ;;
+ *[\\/]*)
+ progdir=$func_dirname_result
+ progdir=`cd "$progdir" && pwd`
+ progpath="$progdir/$progname"
+ ;;
+ *)
+ save_IFS="$IFS"
+ IFS=:
+ for progdir in $PATH; do
+ IFS="$save_IFS"
+ test -x "$progdir/$progname" && break
+ done
+ IFS="$save_IFS"
+ test -n "$progdir" || progdir=`pwd`
+ progpath="$progdir/$progname"
+ ;;
+esac
+
+# Sed substitution that helps us do robust quoting. It backslashifies
+# metacharacters that are still active within double-quoted strings.
+Xsed="${SED}"' -e 1s/^X//'
+sed_quote_subst='s/\([`"$\\]\)/\\\1/g'
+
+# Same as above, but do not quote variable references.
+double_quote_subst='s/\(["`\\]\)/\\\1/g'
+
+# Re-`\' parameter expansions in output of double_quote_subst that were
+# `\'-ed in input to the same. If an odd number of `\' preceded a '$'
+# in input to double_quote_subst, that '$' was protected from expansion.
+# Since each input `\' is now two `\'s, look for any number of runs of
+# four `\'s followed by two `\'s and then a '$'. `\' that '$'.
+bs='\\'
+bs2='\\\\'
+bs4='\\\\\\\\'
+dollar='\$'
+sed_double_backslash="\
+ s/$bs4/&\\
+/g
+ s/^$bs2$dollar/$bs&/
+ s/\\([^$bs]\\)$bs2$dollar/\\1$bs2$bs$dollar/g
+ s/\n//g"
+
+# Standard options:
+opt_dry_run=false
+opt_help=false
+opt_quiet=false
+opt_verbose=false
+opt_warning=:
+
+# func_echo arg...
+# Echo program name prefixed message, along with the current mode
+# name if it has been set yet.
+func_echo ()
+{
+ $ECHO "$progname${mode+: }$mode: $*"
+}
+
+# func_verbose arg...
+# Echo program name prefixed message in verbose mode only.
+func_verbose ()
+{
+ $opt_verbose && func_echo ${1+"$@"}
+
+ # A bug in bash halts the script if the last line of a function
+ # fails when set -e is in force, so we need another command to
+ # work around that:
+ :
+}
+
+# func_error arg...
+# Echo program name prefixed message to standard error.
+func_error ()
+{
+ $ECHO "$progname${mode+: }$mode: "${1+"$@"} 1>&2
+}
+
+# func_warning arg...
+# Echo program name prefixed warning message to standard error.
+func_warning ()
+{
+ $opt_warning && $ECHO "$progname${mode+: }$mode: warning: "${1+"$@"} 1>&2
+
+ # bash bug again:
+ :
+}
+
+# func_fatal_error arg...
+# Echo program name prefixed message to standard error, and exit.
+func_fatal_error ()
+{
+ func_error ${1+"$@"}
+ exit $EXIT_FAILURE
+}
+
+# func_fatal_help arg...
+# Echo program name prefixed message to standard error, followed by
+# a help hint, and exit.
+func_fatal_help ()
+{
+ func_error ${1+"$@"}
+ func_fatal_error "$help"
+}
+help="Try \`$progname --help' for more information." ## default
+
+
+# func_grep expression filename
+# Check whether EXPRESSION matches any line of FILENAME, without output.
+func_grep ()
+{
+ $GREP "$1" "$2" >/dev/null 2>&1
+}
+
+
+# func_mkdir_p directory-path
+# Make sure the entire path to DIRECTORY-PATH is available.
+func_mkdir_p ()
+{
+ my_directory_path="$1"
+ my_dir_list=
+
+ if test -n "$my_directory_path" && test "$opt_dry_run" != ":"; then
+
+ # Protect directory names starting with `-'
+ case $my_directory_path in
+ -*) my_directory_path="./$my_directory_path" ;;
+ esac
+
+ # While some portion of DIR does not yet exist...
+ while test ! -d "$my_directory_path"; do
+ # ...make a list in topmost first order. Use a colon delimited
+ # list incase some portion of path contains whitespace.
+ my_dir_list="$my_directory_path:$my_dir_list"
+
+ # If the last portion added has no slash in it, the list is done
+ case $my_directory_path in */*) ;; *) break ;; esac
+
+ # ...otherwise throw away the child directory and loop
+ my_directory_path=`$ECHO "X$my_directory_path" | $Xsed -e "$dirname"`
+ done
+ my_dir_list=`$ECHO "X$my_dir_list" | $Xsed -e 's,:*$,,'`
+
+ save_mkdir_p_IFS="$IFS"; IFS=':'
+ for my_dir in $my_dir_list; do
+ IFS="$save_mkdir_p_IFS"
+ # mkdir can fail with a `File exist' error if two processes
+ # try to create one of the directories concurrently. Don't
+ # stop in that case!
+ $MKDIR "$my_dir" 2>/dev/null || :
+ done
+ IFS="$save_mkdir_p_IFS"
+
+ # Bail out if we (or some other process) failed to create a directory.
+ test -d "$my_directory_path" || \
+ func_fatal_error "Failed to create \`$1'"
+ fi
+}
+
+
+# func_mktempdir [string]
+# Make a temporary directory that won't clash with other running
+# libtool processes, and avoids race conditions if possible. If
+# given, STRING is the basename for that directory.
+func_mktempdir ()
+{
+ my_template="${TMPDIR-/tmp}/${1-$progname}"
+
+ if test "$opt_dry_run" = ":"; then
+ # Return a directory name, but don't create it in dry-run mode
+ my_tmpdir="${my_template}-$$"
+ else
+
+ # If mktemp works, use that first and foremost
+ my_tmpdir=`mktemp -d "${my_template}-XXXXXXXX" 2>/dev/null`
+
+ if test ! -d "$my_tmpdir"; then
+ # Failing that, at least try and use $RANDOM to avoid a race
+ my_tmpdir="${my_template}-${RANDOM-0}$$"
+
+ save_mktempdir_umask=`umask`
+ umask 0077
+ $MKDIR "$my_tmpdir"
+ umask $save_mktempdir_umask
+ fi
+
+ # If we're not in dry-run mode, bomb out on failure
+ test -d "$my_tmpdir" || \
+ func_fatal_error "cannot create temporary directory \`$my_tmpdir'"
+ fi
+
+ $ECHO "X$my_tmpdir" | $Xsed
+}
+
+
+# func_quote_for_eval arg
+# Aesthetically quote ARG to be evaled later.
+# This function returns two values: FUNC_QUOTE_FOR_EVAL_RESULT
+# is double-quoted, suitable for a subsequent eval, whereas
+# FUNC_QUOTE_FOR_EVAL_UNQUOTED_RESULT has merely all characters
+# which are still active within double quotes backslashified.
+func_quote_for_eval ()
+{
+ case $1 in
+ *[\\\`\"\$]*)
+ func_quote_for_eval_unquoted_result=`$ECHO "X$1" | $Xsed -e "$sed_quote_subst"` ;;
+ *)
+ func_quote_for_eval_unquoted_result="$1" ;;
+ esac
+
+ case $func_quote_for_eval_unquoted_result in
+ # Double-quote args containing shell metacharacters to delay
+ # word splitting, command substitution and and variable
+ # expansion for a subsequent eval.
+ # Many Bourne shells cannot handle close brackets correctly
+ # in scan sets, so we specify it separately.
+ *[\[\~\#\^\&\*\(\)\{\}\|\;\<\>\?\'\ \ ]*|*]*|"")
+ func_quote_for_eval_result="\"$func_quote_for_eval_unquoted_result\""
+ ;;
+ *)
+ func_quote_for_eval_result="$func_quote_for_eval_unquoted_result"
+ esac
+}
+
+
+# func_quote_for_expand arg
+# Aesthetically quote ARG to be evaled later; same as above,
+# but do not quote variable references.
+func_quote_for_expand ()
+{
+ case $1 in
+ *[\\\`\"]*)
+ my_arg=`$ECHO "X$1" | $Xsed \
+ -e "$double_quote_subst" -e "$sed_double_backslash"` ;;
+ *)
+ my_arg="$1" ;;
+ esac
+
+ case $my_arg in
+ # Double-quote args containing shell metacharacters to delay
+ # word splitting and command substitution for a subsequent eval.
+ # Many Bourne shells cannot handle close brackets correctly
+ # in scan sets, so we specify it separately.
+ *[\[\~\#\^\&\*\(\)\{\}\|\;\<\>\?\'\ \ ]*|*]*|"")
+ my_arg="\"$my_arg\""
+ ;;
+ esac
+
+ func_quote_for_expand_result="$my_arg"
+}
+
+
+# func_show_eval cmd [fail_exp]
+# Unless opt_silent is true, then output CMD. Then, if opt_dryrun is
+# not true, evaluate CMD. If the evaluation of CMD fails, and FAIL_EXP
+# is given, then evaluate it.
+func_show_eval ()
+{
+ my_cmd="$1"
+ my_fail_exp="${2-:}"
+
+ ${opt_silent-false} || {
+ func_quote_for_expand "$my_cmd"
+ eval "func_echo $func_quote_for_expand_result"
+ }
+
+ if ${opt_dry_run-false}; then :; else
+ eval "$my_cmd"
+ my_status=$?
+ if test "$my_status" -eq 0; then :; else
+ eval "(exit $my_status); $my_fail_exp"
+ fi
+ fi
+}
+
+
+# func_show_eval_locale cmd [fail_exp]
+# Unless opt_silent is true, then output CMD. Then, if opt_dryrun is
+# not true, evaluate CMD. If the evaluation of CMD fails, and FAIL_EXP
+# is given, then evaluate it. Use the saved locale for evaluation.
+func_show_eval_locale ()
+{
+ my_cmd="$1"
+ my_fail_exp="${2-:}"
+
+ ${opt_silent-false} || {
+ func_quote_for_expand "$my_cmd"
+ eval "func_echo $func_quote_for_expand_result"
+ }
+
+ if ${opt_dry_run-false}; then :; else
+ eval "$lt_user_locale
+ $my_cmd"
+ my_status=$?
+ eval "$lt_safe_locale"
+ if test "$my_status" -eq 0; then :; else
+ eval "(exit $my_status); $my_fail_exp"
+ fi
+ fi
+}
+
+
+
+
+
+# func_version
+# Echo version message to standard output and exit.
+func_version ()
+{
+ $SED -n '/^# '$PROGRAM' (GNU /,/# warranty; / {
+ s/^# //
+ s/^# *$//
+ s/\((C)\)[ 0-9,-]*\( [1-9][0-9]*\)/\1\2/
+ p
+ }' < "$progpath"
+ exit $?
+}
+
+# func_usage
+# Echo short help message to standard output and exit.
+func_usage ()
+{
+ $SED -n '/^# Usage:/,/# -h/ {
+ s/^# //
+ s/^# *$//
+ s/\$progname/'$progname'/
+ p
+ }' < "$progpath"
+ $ECHO
+ $ECHO "run \`$progname --help | more' for full usage"
+ exit $?
+}
+
+# func_help
+# Echo long help message to standard output and exit.
+func_help ()
+{
+ $SED -n '/^# Usage:/,/# Report bugs to/ {
+ s/^# //
+ s/^# *$//
+ s*\$progname*'$progname'*
+ s*\$host*'"$host"'*
+ s*\$SHELL*'"$SHELL"'*
+ s*\$LTCC*'"$LTCC"'*
+ s*\$LTCFLAGS*'"$LTCFLAGS"'*
+ s*\$LD*'"$LD"'*
+ s/\$with_gnu_ld/'"$with_gnu_ld"'/
+ s/\$automake_version/'"`(automake --version) 2>/dev/null |$SED 1q`"'/
+ s/\$autoconf_version/'"`(autoconf --version) 2>/dev/null |$SED 1q`"'/
+ p
+ }' < "$progpath"
+ exit $?
+}
+
+# func_missing_arg argname
+# Echo program name prefixed message to standard error and set global
+# exit_cmd.
+func_missing_arg ()
+{
+ func_error "missing argument for $1"
+ exit_cmd=exit
+}
+
+exit_cmd=:
+
+
+
+
+
+# Check that we have a working $ECHO.
+if test "X$1" = X--no-reexec; then
+ # Discard the --no-reexec flag, and continue.
+ shift
+elif test "X$1" = X--fallback-echo; then
+ # Avoid inline document here, it may be left over
+ :
+elif test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t'; then
+ # Yippee, $ECHO works!
+ :
+else
+ # Restart under the correct shell, and then maybe $ECHO will work.
+ exec $SHELL "$progpath" --no-reexec ${1+"$@"}
+fi
+
+if test "X$1" = X--fallback-echo; then
+ # used as fallback echo
+ shift
+ cat <<EOF
+$*
+EOF
+ exit $EXIT_SUCCESS
+fi
+
+magic="%%%MAGIC variable%%%"
+magic_exe="%%%MAGIC EXE variable%%%"
+
+# Global variables.
+# $mode is unset
+nonopt=
+execute_dlfiles=
+preserve_args=
+lo2o="s/\\.lo\$/.${objext}/"
+o2lo="s/\\.${objext}\$/.lo/"
+extracted_archives=
+extracted_serial=0
+
+opt_dry_run=false
+opt_duplicate_deps=false
+opt_silent=false
+opt_debug=:
+
+# If this variable is set in any of the actions, the command in it
+# will be execed at the end. This prevents here-documents from being
+# left over by shells.
+exec_cmd=
+
+# func_fatal_configuration arg...
+# Echo program name prefixed message to standard error, followed by
+# a configuration failure hint, and exit.
+func_fatal_configuration ()
+{
+ func_error ${1+"$@"}
+ func_error "See the $PACKAGE documentation for more information."
+ func_fatal_error "Fatal configuration error."
+}
+
+
+# func_config
+# Display the configuration for all the tags in this script.
+func_config ()
+{
+ re_begincf='^# ### BEGIN LIBTOOL'
+ re_endcf='^# ### END LIBTOOL'
+
+ # Default configuration.
+ $SED "1,/$re_begincf CONFIG/d;/$re_endcf CONFIG/,\$d" < "$progpath"
+
+ # Now print the configurations for the tags.
+ for tagname in $taglist; do
+ $SED -n "/$re_begincf TAG CONFIG: $tagname\$/,/$re_endcf TAG CONFIG: $tagname\$/p" < "$progpath"
+ done
+
+ exit $?
+}
+
+# func_features
+# Display the features supported by this script.
+func_features ()
+{
+ $ECHO "host: $host"
+ if test "$build_libtool_libs" = yes; then
+ $ECHO "enable shared libraries"
+ else
+ $ECHO "disable shared libraries"
+ fi
+ if test "$build_old_libs" = yes; then
+ $ECHO "enable static libraries"
+ else
+ $ECHO "disable static libraries"
+ fi
+
+ exit $?
+}
+
+# func_enable_tag tagname
+# Verify that TAGNAME is valid, and either flag an error and exit, or
+# enable the TAGNAME tag. We also add TAGNAME to the global $taglist
+# variable here.
+func_enable_tag ()
+{
+ # Global variable:
+ tagname="$1"
+
+ re_begincf="^# ### BEGIN LIBTOOL TAG CONFIG: $tagname\$"
+ re_endcf="^# ### END LIBTOOL TAG CONFIG: $tagname\$"
+ sed_extractcf="/$re_begincf/,/$re_endcf/p"
+
+ # Validate tagname.
+ case $tagname in
+ *[!-_A-Za-z0-9,/]*)
+ func_fatal_error "invalid tag name: $tagname"
+ ;;
+ esac
+
+ # Don't test for the "default" C tag, as we know it's
+ # there but not specially marked.
+ case $tagname in
+ CC) ;;
+ *)
+ if $GREP "$re_begincf" "$progpath" >/dev/null 2>&1; then
+ taglist="$taglist $tagname"
+
+ # Evaluate the configuration. Be careful to quote the path
+ # and the sed script, to avoid splitting on whitespace, but
+ # also don't use non-portable quotes within backquotes within
+ # quotes we have to do it in 2 steps:
+ extractedcf=`$SED -n -e "$sed_extractcf" < "$progpath"`
+ eval "$extractedcf"
+ else
+ func_error "ignoring unknown tag $tagname"
+ fi
+ ;;
+ esac
+}
+
+# Parse options once, thoroughly. This comes as soon as possible in
+# the script to make things like `libtool --version' happen quickly.
+{
+
+ # Shorthand for --mode=foo, only valid as the first argument
+ case $1 in
+ clean|clea|cle|cl)
+ shift; set dummy --mode clean ${1+"$@"}; shift
+ ;;
+ compile|compil|compi|comp|com|co|c)
+ shift; set dummy --mode compile ${1+"$@"}; shift
+ ;;
+ execute|execut|execu|exec|exe|ex|e)
+ shift; set dummy --mode execute ${1+"$@"}; shift
+ ;;
+ finish|finis|fini|fin|fi|f)
+ shift; set dummy --mode finish ${1+"$@"}; shift
+ ;;
+ install|instal|insta|inst|ins|in|i)
+ shift; set dummy --mode install ${1+"$@"}; shift
+ ;;
+ link|lin|li|l)
+ shift; set dummy --mode link ${1+"$@"}; shift
+ ;;
+ uninstall|uninstal|uninsta|uninst|unins|unin|uni|un|u)
+ shift; set dummy --mode uninstall ${1+"$@"}; shift
+ ;;
+ esac
+
+ # Parse non-mode specific arguments:
+ while test "$#" -gt 0; do
+ opt="$1"
+ shift
+
+ case $opt in
+ --config) func_config ;;
+
+ --debug) preserve_args="$preserve_args $opt"
+ func_echo "enabling shell trace mode"
+ opt_debug='set -x'
+ $opt_debug
+ ;;
+
+ -dlopen) test "$#" -eq 0 && func_missing_arg "$opt" && break
+ execute_dlfiles="$execute_dlfiles $1"
+ shift
+ ;;
+
+ --dry-run | -n) opt_dry_run=: ;;
+ --features) func_features ;;
+ --finish) mode="finish" ;;
+
+ --mode) test "$#" -eq 0 && func_missing_arg "$opt" && break
+ case $1 in
+ # Valid mode arguments:
+ clean) ;;
+ compile) ;;
+ execute) ;;
+ finish) ;;
+ install) ;;
+ link) ;;
+ relink) ;;
+ uninstall) ;;
+
+ # Catch anything else as an error
+ *) func_error "invalid argument for $opt"
+ exit_cmd=exit
+ break
+ ;;
+ esac
+
+ mode="$1"
+ shift
+ ;;
+
+ --preserve-dup-deps)
+ opt_duplicate_deps=: ;;
+
+ --quiet|--silent) preserve_args="$preserve_args $opt"
+ opt_silent=:
+ ;;
+
+ --verbose| -v) preserve_args="$preserve_args $opt"
+ opt_silent=false
+ ;;
+
+ --tag) test "$#" -eq 0 && func_missing_arg "$opt" && break
+ preserve_args="$preserve_args $opt $1"
+ func_enable_tag "$1" # tagname is set here
+ shift
+ ;;
+
+ # Separate optargs to long options:
+ -dlopen=*|--mode=*|--tag=*)
+ func_opt_split "$opt"
+ set dummy "$func_opt_split_opt" "$func_opt_split_arg" ${1+"$@"}
+ shift
+ ;;
+
+ -\?|-h) func_usage ;;
+ --help) opt_help=: ;;
+ --version) func_version ;;
+
+ -*) func_fatal_help "unrecognized option \`$opt'" ;;
+
+ *) nonopt="$opt"
+ break
+ ;;
+ esac
+ done
+
+
+ case $host in
+ *cygwin* | *mingw* | *pw32* | *cegcc*)
+ # don't eliminate duplications in $postdeps and $predeps
+ opt_duplicate_compiler_generated_deps=:
+ ;;
+ *)
+ opt_duplicate_compiler_generated_deps=$opt_duplicate_deps
+ ;;
+ esac
+
+ # Having warned about all mis-specified options, bail out if
+ # anything was wrong.
+ $exit_cmd $EXIT_FAILURE
+}
+
+# func_check_version_match
+# Ensure that we are using m4 macros, and libtool script from the same
+# release of libtool.
+func_check_version_match ()
+{
+ if test "$package_revision" != "$macro_revision"; then
+ if test "$VERSION" != "$macro_version"; then
+ if test -z "$macro_version"; then
+ cat >&2 <<_LT_EOF
+$progname: Version mismatch error. This is $PACKAGE $VERSION, but the
+$progname: definition of this LT_INIT comes from an older release.
+$progname: You should recreate aclocal.m4 with macros from $PACKAGE $VERSION
+$progname: and run autoconf again.
+_LT_EOF
+ else
+ cat >&2 <<_LT_EOF
+$progname: Version mismatch error. This is $PACKAGE $VERSION, but the
+$progname: definition of this LT_INIT comes from $PACKAGE $macro_version.
+$progname: You should recreate aclocal.m4 with macros from $PACKAGE $VERSION
+$progname: and run autoconf again.
+_LT_EOF
+ fi
+ else
+ cat >&2 <<_LT_EOF
+$progname: Version mismatch error. This is $PACKAGE $VERSION, revision $package_revision,
+$progname: but the definition of this LT_INIT comes from revision $macro_revision.
+$progname: You should recreate aclocal.m4 with macros from revision $package_revision
+$progname: of $PACKAGE $VERSION and run autoconf again.
+_LT_EOF
+ fi
+
+ exit $EXIT_MISMATCH
+ fi
+}
+
+
+## ----------- ##
+## Main. ##
+## ----------- ##
+
+$opt_help || {
+ # Sanity checks first:
+ func_check_version_match
+
+ if test "$build_libtool_libs" != yes && test "$build_old_libs" != yes; then
+ func_fatal_configuration "not configured to build any kind of library"
+ fi
+
+ test -z "$mode" && func_fatal_error "error: you must specify a MODE."
+
+
+ # Darwin sucks
+ eval std_shrext=\"$shrext_cmds\"
+
+
+ # Only execute mode is allowed to have -dlopen flags.
+ if test -n "$execute_dlfiles" && test "$mode" != execute; then
+ func_error "unrecognized option \`-dlopen'"
+ $ECHO "$help" 1>&2
+ exit $EXIT_FAILURE
+ fi
+
+ # Change the help message to a mode-specific one.
+ generic_help="$help"
+ help="Try \`$progname --help --mode=$mode' for more information."
+}
+
+
+# func_lalib_p file
+# True iff FILE is a libtool `.la' library or `.lo' object file.
+# This function is only a basic sanity check; it will hardly flush out
+# determined imposters.
+func_lalib_p ()
+{
+ test -f "$1" &&
+ $SED -e 4q "$1" 2>/dev/null \
+ | $GREP "^# Generated by .*$PACKAGE" > /dev/null 2>&1
+}
+
+# func_lalib_unsafe_p file
+# True iff FILE is a libtool `.la' library or `.lo' object file.
+# This function implements the same check as func_lalib_p without
+# resorting to external programs. To this end, it redirects stdin and
+# closes it afterwards, without saving the original file descriptor.
+# As a safety measure, use it only where a negative result would be
+# fatal anyway. Works if `file' does not exist.
+func_lalib_unsafe_p ()
+{
+ lalib_p=no
+ if test -f "$1" && test -r "$1" && exec 5<&0 <"$1"; then
+ for lalib_p_l in 1 2 3 4
+ do
+ read lalib_p_line
+ case "$lalib_p_line" in
+ \#\ Generated\ by\ *$PACKAGE* ) lalib_p=yes; break;;
+ esac
+ done
+ exec 0<&5 5<&-
+ fi
+ test "$lalib_p" = yes
+}
+
+# func_ltwrapper_script_p file
+# True iff FILE is a libtool wrapper script
+# This function is only a basic sanity check; it will hardly flush out
+# determined imposters.
+func_ltwrapper_script_p ()
+{
+ func_lalib_p "$1"
+}
+
+# func_ltwrapper_executable_p file
+# True iff FILE is a libtool wrapper executable
+# This function is only a basic sanity check; it will hardly flush out
+# determined imposters.
+func_ltwrapper_executable_p ()
+{
+ func_ltwrapper_exec_suffix=
+ case $1 in
+ *.exe) ;;
+ *) func_ltwrapper_exec_suffix=.exe ;;
+ esac
+ $GREP "$magic_exe" "$1$func_ltwrapper_exec_suffix" >/dev/null 2>&1
+}
+
+# func_ltwrapper_scriptname file
+# Assumes file is an ltwrapper_executable
+# uses $file to determine the appropriate filename for a
+# temporary ltwrapper_script.
+func_ltwrapper_scriptname ()
+{
+ func_ltwrapper_scriptname_result=""
+ if func_ltwrapper_executable_p "$1"; then
+ func_dirname_and_basename "$1" "" "."
+ func_stripname '' '.exe' "$func_basename_result"
+ func_ltwrapper_scriptname_result="$func_dirname_result/$objdir/${func_stripname_result}_ltshwrapper"
+ fi
+}
+
+# func_ltwrapper_p file
+# True iff FILE is a libtool wrapper script or wrapper executable
+# This function is only a basic sanity check; it will hardly flush out
+# determined imposters.
+func_ltwrapper_p ()
+{
+ func_ltwrapper_script_p "$1" || func_ltwrapper_executable_p "$1"
+}
+
+
+# func_execute_cmds commands fail_cmd
+# Execute tilde-delimited COMMANDS.
+# If FAIL_CMD is given, eval that upon failure.
+# FAIL_CMD may read-access the current command in variable CMD!
+func_execute_cmds ()
+{
+ $opt_debug
+ save_ifs=$IFS; IFS='~'
+ for cmd in $1; do
+ IFS=$save_ifs
+ eval cmd=\"$cmd\"
+ func_show_eval "$cmd" "${2-:}"
+ done
+ IFS=$save_ifs
+}
+
+
+# func_source file
+# Source FILE, adding directory component if necessary.
+# Note that it is not necessary on cygwin/mingw to append a dot to
+# FILE even if both FILE and FILE.exe exist: automatic-append-.exe
+# behavior happens only for exec(3), not for open(2)! Also, sourcing
+# `FILE.' does not work on cygwin managed mounts.
+func_source ()
+{
+ $opt_debug
+ case $1 in
+ */* | *\\*) . "$1" ;;
+ *) . "./$1" ;;
+ esac
+}
+
+
+# func_infer_tag arg
+# Infer tagged configuration to use if any are available and
+# if one wasn't chosen via the "--tag" command line option.
+# Only attempt this if the compiler in the base compile
+# command doesn't match the default compiler.
+# arg is usually of the form 'gcc ...'
+func_infer_tag ()
+{
+ $opt_debug
+ if test -n "$available_tags" && test -z "$tagname"; then
+ CC_quoted=
+ for arg in $CC; do
+ func_quote_for_eval "$arg"
+ CC_quoted="$CC_quoted $func_quote_for_eval_result"
+ done
+ case $@ in
+ # Blanks in the command may have been stripped by the calling shell,
+ # but not from the CC environment variable when configure was run.
+ " $CC "* | "$CC "* | " `$ECHO $CC` "* | "`$ECHO $CC` "* | " $CC_quoted"* | "$CC_quoted "* | " `$ECHO $CC_quoted` "* | "`$ECHO $CC_quoted` "*) ;;
+ # Blanks at the start of $base_compile will cause this to fail
+ # if we don't check for them as well.
+ *)
+ for z in $available_tags; do
+ if $GREP "^# ### BEGIN LIBTOOL TAG CONFIG: $z$" < "$progpath" > /dev/null; then
+ # Evaluate the configuration.
+ eval "`${SED} -n -e '/^# ### BEGIN LIBTOOL TAG CONFIG: '$z'$/,/^# ### END LIBTOOL TAG CONFIG: '$z'$/p' < $progpath`"
+ CC_quoted=
+ for arg in $CC; do
+ # Double-quote args containing other shell metacharacters.
+ func_quote_for_eval "$arg"
+ CC_quoted="$CC_quoted $func_quote_for_eval_result"
+ done
+ case "$@ " in
+ " $CC "* | "$CC "* | " `$ECHO $CC` "* | "`$ECHO $CC` "* | " $CC_quoted"* | "$CC_quoted "* | " `$ECHO $CC_quoted` "* | "`$ECHO $CC_quoted` "*)
+ # The compiler in the base compile command matches
+ # the one in the tagged configuration.
+ # Assume this is the tagged configuration we want.
+ tagname=$z
+ break
+ ;;
+ esac
+ fi
+ done
+ # If $tagname still isn't set, then no tagged configuration
+ # was found and let the user know that the "--tag" command
+ # line option must be used.
+ if test -z "$tagname"; then
+ func_echo "unable to infer tagged configuration"
+ func_fatal_error "specify a tag with \`--tag'"
+# else
+# func_verbose "using $tagname tagged configuration"
+ fi
+ ;;
+ esac
+ fi
+}
+
+
+
+# func_write_libtool_object output_name pic_name nonpic_name
+# Create a libtool object file (analogous to a ".la" file),
+# but don't create it if we're doing a dry run.
+func_write_libtool_object ()
+{
+ write_libobj=${1}
+ if test "$build_libtool_libs" = yes; then
+ write_lobj=\'${2}\'
+ else
+ write_lobj=none
+ fi
+
+ if test "$build_old_libs" = yes; then
+ write_oldobj=\'${3}\'
+ else
+ write_oldobj=none
+ fi
+
+ $opt_dry_run || {
+ cat >${write_libobj}T <<EOF
+# $write_libobj - a libtool object file
+# Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# Name of the PIC object.
+pic_object=$write_lobj
+
+# Name of the non-PIC object
+non_pic_object=$write_oldobj
+
+EOF
+ $MV "${write_libobj}T" "${write_libobj}"
+ }
+}
+
+# func_mode_compile arg...
+func_mode_compile ()
+{
+ $opt_debug
+ # Get the compilation command and the source file.
+ base_compile=
+ srcfile="$nonopt" # always keep a non-empty value in "srcfile"
+ suppress_opt=yes
+ suppress_output=
+ arg_mode=normal
+ libobj=
+ later=
+ pie_flag=
+
+ for arg
+ do
+ case $arg_mode in
+ arg )
+ # do not "continue". Instead, add this to base_compile
+ lastarg="$arg"
+ arg_mode=normal
+ ;;
+
+ target )
+ libobj="$arg"
+ arg_mode=normal
+ continue
+ ;;
+
+ normal )
+ # Accept any command-line options.
+ case $arg in
+ -o)
+ test -n "$libobj" && \
+ func_fatal_error "you cannot specify \`-o' more than once"
+ arg_mode=target
+ continue
+ ;;
+
+ -pie | -fpie | -fPIE)
+ pie_flag="$pie_flag $arg"
+ continue
+ ;;
+
+ -shared | -static | -prefer-pic | -prefer-non-pic)
+ later="$later $arg"
+ continue
+ ;;
+
+ -no-suppress)
+ suppress_opt=no
+ continue
+ ;;
+
+ -Xcompiler)
+ arg_mode=arg # the next one goes into the "base_compile" arg list
+ continue # The current "srcfile" will either be retained or
+ ;; # replaced later. I would guess that would be a bug.
+
+ -Wc,*)
+ func_stripname '-Wc,' '' "$arg"
+ args=$func_stripname_result
+ lastarg=
+ save_ifs="$IFS"; IFS=','
+ for arg in $args; do
+ IFS="$save_ifs"
+ func_quote_for_eval "$arg"
+ lastarg="$lastarg $func_quote_for_eval_result"
+ done
+ IFS="$save_ifs"
+ func_stripname ' ' '' "$lastarg"
+ lastarg=$func_stripname_result
+
+ # Add the arguments to base_compile.
+ base_compile="$base_compile $lastarg"
+ continue
+ ;;
+
+ *)
+ # Accept the current argument as the source file.
+ # The previous "srcfile" becomes the current argument.
+ #
+ lastarg="$srcfile"
+ srcfile="$arg"
+ ;;
+ esac # case $arg
+ ;;
+ esac # case $arg_mode
+
+ # Aesthetically quote the previous argument.
+ func_quote_for_eval "$lastarg"
+ base_compile="$base_compile $func_quote_for_eval_result"
+ done # for arg
+
+ case $arg_mode in
+ arg)
+ func_fatal_error "you must specify an argument for -Xcompile"
+ ;;
+ target)
+ func_fatal_error "you must specify a target with \`-o'"
+ ;;
+ *)
+ # Get the name of the library object.
+ test -z "$libobj" && {
+ func_basename "$srcfile"
+ libobj="$func_basename_result"
+ }
+ ;;
+ esac
+
+ # Recognize several different file suffixes.
+ # If the user specifies -o file.o, it is replaced with file.lo
+ case $libobj in
+ *.[cCFSifmso] | \
+ *.ada | *.adb | *.ads | *.asm | \
+ *.c++ | *.cc | *.ii | *.class | *.cpp | *.cxx | \
+ *.[fF][09]? | *.for | *.java | *.obj | *.sx)
+ func_xform "$libobj"
+ libobj=$func_xform_result
+ ;;
+ esac
+
+ case $libobj in
+ *.lo) func_lo2o "$libobj"; obj=$func_lo2o_result ;;
+ *)
+ func_fatal_error "cannot determine name of library object from \`$libobj'"
+ ;;
+ esac
+
+ func_infer_tag $base_compile
+
+ for arg in $later; do
+ case $arg in
+ -shared)
+ test "$build_libtool_libs" != yes && \
+ func_fatal_configuration "can not build a shared library"
+ build_old_libs=no
+ continue
+ ;;
+
+ -static)
+ build_libtool_libs=no
+ build_old_libs=yes
+ continue
+ ;;
+
+ -prefer-pic)
+ pic_mode=yes
+ continue
+ ;;
+
+ -prefer-non-pic)
+ pic_mode=no
+ continue
+ ;;
+ esac
+ done
+
+ func_quote_for_eval "$libobj"
+ test "X$libobj" != "X$func_quote_for_eval_result" \
+ && $ECHO "X$libobj" | $GREP '[]~#^*{};<>?"'"'"' &()|`$[]' \
+ && func_warning "libobj name \`$libobj' may not contain shell special characters."
+ func_dirname_and_basename "$obj" "/" ""
+ objname="$func_basename_result"
+ xdir="$func_dirname_result"
+ lobj=${xdir}$objdir/$objname
+
+ test -z "$base_compile" && \
+ func_fatal_help "you must specify a compilation command"
+
+ # Delete any leftover library objects.
+ if test "$build_old_libs" = yes; then
+ removelist="$obj $lobj $libobj ${libobj}T"
+ else
+ removelist="$lobj $libobj ${libobj}T"
+ fi
+
+ # On Cygwin there's no "real" PIC flag so we must build both object types
+ case $host_os in
+ cygwin* | mingw* | pw32* | os2* | cegcc*)
+ pic_mode=default
+ ;;
+ esac
+ if test "$pic_mode" = no && test "$deplibs_check_method" != pass_all; then
+ # non-PIC code in shared libraries is not supported
+ pic_mode=default
+ fi
+
+ # Calculate the filename of the output object if compiler does
+ # not support -o with -c
+ if test "$compiler_c_o" = no; then
+ output_obj=`$ECHO "X$srcfile" | $Xsed -e 's%^.*/%%' -e 's%\.[^.]*$%%'`.${objext}
+ lockfile="$output_obj.lock"
+ else
+ output_obj=
+ need_locks=no
+ lockfile=
+ fi
+
+ # Lock this critical section if it is needed
+ # We use this script file to make the link, it avoids creating a new file
+ if test "$need_locks" = yes; then
+ until $opt_dry_run || ln "$progpath" "$lockfile" 2>/dev/null; do
+ func_echo "Waiting for $lockfile to be removed"
+ sleep 2
+ done
+ elif test "$need_locks" = warn; then
+ if test -f "$lockfile"; then
+ $ECHO "\
+*** ERROR, $lockfile exists and contains:
+`cat $lockfile 2>/dev/null`
+
+This indicates that another process is trying to use the same
+temporary object file, and libtool could not work around it because
+your compiler does not support \`-c' and \`-o' together. If you
+repeat this compilation, it may succeed, by chance, but you had better
+avoid parallel builds (make -j) in this platform, or get a better
+compiler."
+
+ $opt_dry_run || $RM $removelist
+ exit $EXIT_FAILURE
+ fi
+ removelist="$removelist $output_obj"
+ $ECHO "$srcfile" > "$lockfile"
+ fi
+
+ $opt_dry_run || $RM $removelist
+ removelist="$removelist $lockfile"
+ trap '$opt_dry_run || $RM $removelist; exit $EXIT_FAILURE' 1 2 15
+
+ if test -n "$fix_srcfile_path"; then
+ eval srcfile=\"$fix_srcfile_path\"
+ fi
+ func_quote_for_eval "$srcfile"
+ qsrcfile=$func_quote_for_eval_result
+
+ # Only build a PIC object if we are building libtool libraries.
+ if test "$build_libtool_libs" = yes; then
+ # Without this assignment, base_compile gets emptied.
+ fbsd_hideous_sh_bug=$base_compile
+
+ if test "$pic_mode" != no; then
+ command="$base_compile $qsrcfile $pic_flag"
+ else
+ # Don't build PIC code
+ command="$base_compile $qsrcfile"
+ fi
+
+ func_mkdir_p "$xdir$objdir"
+
+ if test -z "$output_obj"; then
+ # Place PIC objects in $objdir
+ command="$command -o $lobj"
+ fi
+
+ func_show_eval_locale "$command" \
+ 'test -n "$output_obj" && $RM $removelist; exit $EXIT_FAILURE'
+
+ if test "$need_locks" = warn &&
+ test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then
+ $ECHO "\
+*** ERROR, $lockfile contains:
+`cat $lockfile 2>/dev/null`
+
+but it should contain:
+$srcfile
+
+This indicates that another process is trying to use the same
+temporary object file, and libtool could not work around it because
+your compiler does not support \`-c' and \`-o' together. If you
+repeat this compilation, it may succeed, by chance, but you had better
+avoid parallel builds (make -j) in this platform, or get a better
+compiler."
+
+ $opt_dry_run || $RM $removelist
+ exit $EXIT_FAILURE
+ fi
+
+ # Just move the object if needed, then go on to compile the next one
+ if test -n "$output_obj" && test "X$output_obj" != "X$lobj"; then
+ func_show_eval '$MV "$output_obj" "$lobj"' \
+ 'error=$?; $opt_dry_run || $RM $removelist; exit $error'
+ fi
+
+ # Allow error messages only from the first compilation.
+ if test "$suppress_opt" = yes; then
+ suppress_output=' >/dev/null 2>&1'
+ fi
+ fi
+
+ # Only build a position-dependent object if we build old libraries.
+ if test "$build_old_libs" = yes; then
+ if test "$pic_mode" != yes; then
+ # Don't build PIC code
+ command="$base_compile $qsrcfile$pie_flag"
+ else
+ command="$base_compile $qsrcfile $pic_flag"
+ fi
+ if test "$compiler_c_o" = yes; then
+ command="$command -o $obj"
+ fi
+
+ # Suppress compiler output if we already did a PIC compilation.
+ command="$command$suppress_output"
+ func_show_eval_locale "$command" \
+ '$opt_dry_run || $RM $removelist; exit $EXIT_FAILURE'
+
+ if test "$need_locks" = warn &&
+ test "X`cat $lockfile 2>/dev/null`" != "X$srcfile"; then
+ $ECHO "\
+*** ERROR, $lockfile contains:
+`cat $lockfile 2>/dev/null`
+
+but it should contain:
+$srcfile
+
+This indicates that another process is trying to use the same
+temporary object file, and libtool could not work around it because
+your compiler does not support \`-c' and \`-o' together. If you
+repeat this compilation, it may succeed, by chance, but you had better
+avoid parallel builds (make -j) in this platform, or get a better
+compiler."
+
+ $opt_dry_run || $RM $removelist
+ exit $EXIT_FAILURE
+ fi
+
+ # Just move the object if needed
+ if test -n "$output_obj" && test "X$output_obj" != "X$obj"; then
+ func_show_eval '$MV "$output_obj" "$obj"' \
+ 'error=$?; $opt_dry_run || $RM $removelist; exit $error'
+ fi
+ fi
+
+ $opt_dry_run || {
+ func_write_libtool_object "$libobj" "$objdir/$objname" "$objname"
+
+ # Unlock the critical section if it was locked
+ if test "$need_locks" != no; then
+ removelist=$lockfile
+ $RM "$lockfile"
+ fi
+ }
+
+ exit $EXIT_SUCCESS
+}
+
+$opt_help || {
+test "$mode" = compile && func_mode_compile ${1+"$@"}
+}
+
+func_mode_help ()
+{
+ # We need to display help for each of the modes.
+ case $mode in
+ "")
+ # Generic help is extracted from the usage comments
+ # at the start of this file.
+ func_help
+ ;;
+
+ clean)
+ $ECHO \
+"Usage: $progname [OPTION]... --mode=clean RM [RM-OPTION]... FILE...
+
+Remove files from the build directory.
+
+RM is the name of the program to use to delete files associated with each FILE
+(typically \`/bin/rm'). RM-OPTIONS are options (such as \`-f') to be passed
+to RM.
+
+If FILE is a libtool library, object or program, all the files associated
+with it are deleted. Otherwise, only FILE itself is deleted using RM."
+ ;;
+
+ compile)
+ $ECHO \
+"Usage: $progname [OPTION]... --mode=compile COMPILE-COMMAND... SOURCEFILE
+
+Compile a source file into a libtool library object.
+
+This mode accepts the following additional options:
+
+ -o OUTPUT-FILE set the output file name to OUTPUT-FILE
+ -no-suppress do not suppress compiler output for multiple passes
+ -prefer-pic try to building PIC objects only
+ -prefer-non-pic try to building non-PIC objects only
+ -shared do not build a \`.o' file suitable for static linking
+ -static only build a \`.o' file suitable for static linking
+
+COMPILE-COMMAND is a command to be used in creating a \`standard' object file
+from the given SOURCEFILE.
+
+The output file name is determined by removing the directory component from
+SOURCEFILE, then substituting the C source code suffix \`.c' with the
+library object suffix, \`.lo'."
+ ;;
+
+ execute)
+ $ECHO \
+"Usage: $progname [OPTION]... --mode=execute COMMAND [ARGS]...
+
+Automatically set library path, then run a program.
+
+This mode accepts the following additional options:
+
+ -dlopen FILE add the directory containing FILE to the library path
+
+This mode sets the library path environment variable according to \`-dlopen'
+flags.
+
+If any of the ARGS are libtool executable wrappers, then they are translated
+into their corresponding uninstalled binary, and any of their required library
+directories are added to the library path.
+
+Then, COMMAND is executed, with ARGS as arguments."
+ ;;
+
+ finish)
+ $ECHO \
+"Usage: $progname [OPTION]... --mode=finish [LIBDIR]...
+
+Complete the installation of libtool libraries.
+
+Each LIBDIR is a directory that contains libtool libraries.
+
+The commands that this mode executes may require superuser privileges. Use
+the \`--dry-run' option if you just want to see what would be executed."
+ ;;
+
+ install)
+ $ECHO \
+"Usage: $progname [OPTION]... --mode=install INSTALL-COMMAND...
+
+Install executables or libraries.
+
+INSTALL-COMMAND is the installation command. The first component should be
+either the \`install' or \`cp' program.
+
+The following components of INSTALL-COMMAND are treated specially:
+
+ -inst-prefix PREFIX-DIR Use PREFIX-DIR as a staging area for installation
+
+The rest of the components are interpreted as arguments to that command (only
+BSD-compatible install options are recognized)."
+ ;;
+
+ link)
+ $ECHO \
+"Usage: $progname [OPTION]... --mode=link LINK-COMMAND...
+
+Link object files or libraries together to form another library, or to
+create an executable program.
+
+LINK-COMMAND is a command using the C compiler that you would use to create
+a program from several object files.
+
+The following components of LINK-COMMAND are treated specially:
+
+ -all-static do not do any dynamic linking at all
+ -avoid-version do not add a version suffix if possible
+ -dlopen FILE \`-dlpreopen' FILE if it cannot be dlopened at runtime
+ -dlpreopen FILE link in FILE and add its symbols to lt_preloaded_symbols
+ -export-dynamic allow symbols from OUTPUT-FILE to be resolved with dlsym(3)
+ -export-symbols SYMFILE
+ try to export only the symbols listed in SYMFILE
+ -export-symbols-regex REGEX
+ try to export only the symbols matching REGEX
+ -LLIBDIR search LIBDIR for required installed libraries
+ -lNAME OUTPUT-FILE requires the installed library libNAME
+ -module build a library that can dlopened
+ -no-fast-install disable the fast-install mode
+ -no-install link a not-installable executable
+ -no-undefined declare that a library does not refer to external symbols
+ -o OUTPUT-FILE create OUTPUT-FILE from the specified objects
+ -objectlist FILE Use a list of object files found in FILE to specify objects
+ -precious-files-regex REGEX
+ don't remove output files matching REGEX
+ -release RELEASE specify package release information
+ -rpath LIBDIR the created library will eventually be installed in LIBDIR
+ -R[ ]LIBDIR add LIBDIR to the runtime path of programs and libraries
+ -shared only do dynamic linking of libtool libraries
+ -shrext SUFFIX override the standard shared library file extension
+ -static do not do any dynamic linking of uninstalled libtool libraries
+ -static-libtool-libs
+ do not do any dynamic linking of libtool libraries
+ -version-info CURRENT[:REVISION[:AGE]]
+ specify library version info [each variable defaults to 0]
+ -weak LIBNAME declare that the target provides the LIBNAME interface
+
+All other options (arguments beginning with \`-') are ignored.
+
+Every other argument is treated as a filename. Files ending in \`.la' are
+treated as uninstalled libtool libraries, other files are standard or library
+object files.
+
+If the OUTPUT-FILE ends in \`.la', then a libtool library is created,
+only library objects (\`.lo' files) may be specified, and \`-rpath' is
+required, except when creating a convenience library.
+
+If OUTPUT-FILE ends in \`.a' or \`.lib', then a standard library is created
+using \`ar' and \`ranlib', or on Windows using \`lib'.
+
+If OUTPUT-FILE ends in \`.lo' or \`.${objext}', then a reloadable object file
+is created, otherwise an executable program is created."
+ ;;
+
+ uninstall)
+ $ECHO \
+"Usage: $progname [OPTION]... --mode=uninstall RM [RM-OPTION]... FILE...
+
+Remove libraries from an installation directory.
+
+RM is the name of the program to use to delete files associated with each FILE
+(typically \`/bin/rm'). RM-OPTIONS are options (such as \`-f') to be passed
+to RM.
+
+If FILE is a libtool library, all the files associated with it are deleted.
+Otherwise, only FILE itself is deleted using RM."
+ ;;
+
+ *)
+ func_fatal_help "invalid operation mode \`$mode'"
+ ;;
+ esac
+
+ $ECHO
+ $ECHO "Try \`$progname --help' for more information about other modes."
+
+ exit $?
+}
+
+ # Now that we've collected a possible --mode arg, show help if necessary
+ $opt_help && func_mode_help
+
+
+# func_mode_execute arg...
+func_mode_execute ()
+{
+ $opt_debug
+ # The first argument is the command name.
+ cmd="$nonopt"
+ test -z "$cmd" && \
+ func_fatal_help "you must specify a COMMAND"
+
+ # Handle -dlopen flags immediately.
+ for file in $execute_dlfiles; do
+ test -f "$file" \
+ || func_fatal_help "\`$file' is not a file"
+
+ dir=
+ case $file in
+ *.la)
+ # Check to see that this really is a libtool archive.
+ func_lalib_unsafe_p "$file" \
+ || func_fatal_help "\`$lib' is not a valid libtool archive"
+
+ # Read the libtool library.
+ dlname=
+ library_names=
+ func_source "$file"
+
+ # Skip this library if it cannot be dlopened.
+ if test -z "$dlname"; then
+ # Warn if it was a shared library.
+ test -n "$library_names" && \
+ func_warning "\`$file' was not linked with \`-export-dynamic'"
+ continue
+ fi
+
+ func_dirname "$file" "" "."
+ dir="$func_dirname_result"
+
+ if test -f "$dir/$objdir/$dlname"; then
+ dir="$dir/$objdir"
+ else
+ if test ! -f "$dir/$dlname"; then
+ func_fatal_error "cannot find \`$dlname' in \`$dir' or \`$dir/$objdir'"
+ fi
+ fi
+ ;;
+
+ *.lo)
+ # Just add the directory containing the .lo file.
+ func_dirname "$file" "" "."
+ dir="$func_dirname_result"
+ ;;
+
+ *)
+ func_warning "\`-dlopen' is ignored for non-libtool libraries and objects"
+ continue
+ ;;
+ esac
+
+ # Get the absolute pathname.
+ absdir=`cd "$dir" && pwd`
+ test -n "$absdir" && dir="$absdir"
+
+ # Now add the directory to shlibpath_var.
+ if eval "test -z \"\$$shlibpath_var\""; then
+ eval "$shlibpath_var=\"\$dir\""
+ else
+ eval "$shlibpath_var=\"\$dir:\$$shlibpath_var\""
+ fi
+ done
+
+ # This variable tells wrapper scripts just to set shlibpath_var
+ # rather than running their programs.
+ libtool_execute_magic="$magic"
+
+ # Check if any of the arguments is a wrapper script.
+ args=
+ for file
+ do
+ case $file in
+ -*) ;;
+ *)
+ # Do a test to see if this is really a libtool program.
+ if func_ltwrapper_script_p "$file"; then
+ func_source "$file"
+ # Transform arg to wrapped name.
+ file="$progdir/$program"
+ elif func_ltwrapper_executable_p "$file"; then
+ func_ltwrapper_scriptname "$file"
+ func_source "$func_ltwrapper_scriptname_result"
+ # Transform arg to wrapped name.
+ file="$progdir/$program"
+ fi
+ ;;
+ esac
+ # Quote arguments (to preserve shell metacharacters).
+ func_quote_for_eval "$file"
+ args="$args $func_quote_for_eval_result"
+ done
+
+ if test "X$opt_dry_run" = Xfalse; then
+ if test -n "$shlibpath_var"; then
+ # Export the shlibpath_var.
+ eval "export $shlibpath_var"
+ fi
+
+ # Restore saved environment variables
+ for lt_var in LANG LANGUAGE LC_ALL LC_CTYPE LC_COLLATE LC_MESSAGES
+ do
+ eval "if test \"\${save_$lt_var+set}\" = set; then
+ $lt_var=\$save_$lt_var; export $lt_var
+ else
+ $lt_unset $lt_var
+ fi"
+ done
+
+ # Now prepare to actually exec the command.
+ exec_cmd="\$cmd$args"
+ else
+ # Display what would be done.
+ if test -n "$shlibpath_var"; then
+ eval "\$ECHO \"\$shlibpath_var=\$$shlibpath_var\""
+ $ECHO "export $shlibpath_var"
+ fi
+ $ECHO "$cmd$args"
+ exit $EXIT_SUCCESS
+ fi
+}
+
+test "$mode" = execute && func_mode_execute ${1+"$@"}
+
+
+# func_mode_finish arg...
+func_mode_finish ()
+{
+ $opt_debug
+ libdirs="$nonopt"
+ admincmds=
+
+ if test -n "$finish_cmds$finish_eval" && test -n "$libdirs"; then
+ for dir
+ do
+ libdirs="$libdirs $dir"
+ done
+
+ for libdir in $libdirs; do
+ if test -n "$finish_cmds"; then
+ # Do each command in the finish commands.
+ func_execute_cmds "$finish_cmds" 'admincmds="$admincmds
+'"$cmd"'"'
+ fi
+ if test -n "$finish_eval"; then
+ # Do the single finish_eval.
+ eval cmds=\"$finish_eval\"
+ $opt_dry_run || eval "$cmds" || admincmds="$admincmds
+ $cmds"
+ fi
+ done
+ fi
+
+ # Exit here if they wanted silent mode.
+ $opt_silent && exit $EXIT_SUCCESS
+
+ $ECHO "X----------------------------------------------------------------------" | $Xsed
+ $ECHO "Libraries have been installed in:"
+ for libdir in $libdirs; do
+ $ECHO " $libdir"
+ done
+ $ECHO
+ $ECHO "If you ever happen to want to link against installed libraries"
+ $ECHO "in a given directory, LIBDIR, you must either use libtool, and"
+ $ECHO "specify the full pathname of the library, or use the \`-LLIBDIR'"
+ $ECHO "flag during linking and do at least one of the following:"
+ if test -n "$shlibpath_var"; then
+ $ECHO " - add LIBDIR to the \`$shlibpath_var' environment variable"
+ $ECHO " during execution"
+ fi
+ if test -n "$runpath_var"; then
+ $ECHO " - add LIBDIR to the \`$runpath_var' environment variable"
+ $ECHO " during linking"
+ fi
+ if test -n "$hardcode_libdir_flag_spec"; then
+ libdir=LIBDIR
+ eval flag=\"$hardcode_libdir_flag_spec\"
+
+ $ECHO " - use the \`$flag' linker flag"
+ fi
+ if test -n "$admincmds"; then
+ $ECHO " - have your system administrator run these commands:$admincmds"
+ fi
+ if test -f /etc/ld.so.conf; then
+ $ECHO " - have your system administrator add LIBDIR to \`/etc/ld.so.conf'"
+ fi
+ $ECHO
+
+ $ECHO "See any operating system documentation about shared libraries for"
+ case $host in
+ solaris2.[6789]|solaris2.1[0-9])
+ $ECHO "more information, such as the ld(1), crle(1) and ld.so(8) manual"
+ $ECHO "pages."
+ ;;
+ *)
+ $ECHO "more information, such as the ld(1) and ld.so(8) manual pages."
+ ;;
+ esac
+ $ECHO "X----------------------------------------------------------------------" | $Xsed
+ exit $EXIT_SUCCESS
+}
+
+test "$mode" = finish && func_mode_finish ${1+"$@"}
+
+
+# func_mode_install arg...
+func_mode_install ()
+{
+ $opt_debug
+ # There may be an optional sh(1) argument at the beginning of
+ # install_prog (especially on Windows NT).
+ if test "$nonopt" = "$SHELL" || test "$nonopt" = /bin/sh ||
+ # Allow the use of GNU shtool's install command.
+ $ECHO "X$nonopt" | $GREP shtool >/dev/null; then
+ # Aesthetically quote it.
+ func_quote_for_eval "$nonopt"
+ install_prog="$func_quote_for_eval_result "
+ arg=$1
+ shift
+ else
+ install_prog=
+ arg=$nonopt
+ fi
+
+ # The real first argument should be the name of the installation program.
+ # Aesthetically quote it.
+ func_quote_for_eval "$arg"
+ install_prog="$install_prog$func_quote_for_eval_result"
+
+ # We need to accept at least all the BSD install flags.
+ dest=
+ files=
+ opts=
+ prev=
+ install_type=
+ isdir=no
+ stripme=
+ for arg
+ do
+ if test -n "$dest"; then
+ files="$files $dest"
+ dest=$arg
+ continue
+ fi
+
+ case $arg in
+ -d) isdir=yes ;;
+ -f)
+ case " $install_prog " in
+ *[\\\ /]cp\ *) ;;
+ *) prev=$arg ;;
+ esac
+ ;;
+ -g | -m | -o)
+ prev=$arg
+ ;;
+ -s)
+ stripme=" -s"
+ continue
+ ;;
+ -*)
+ ;;
+ *)
+ # If the previous option needed an argument, then skip it.
+ if test -n "$prev"; then
+ prev=
+ else
+ dest=$arg
+ continue
+ fi
+ ;;
+ esac
+
+ # Aesthetically quote the argument.
+ func_quote_for_eval "$arg"
+ install_prog="$install_prog $func_quote_for_eval_result"
+ done
+
+ test -z "$install_prog" && \
+ func_fatal_help "you must specify an install program"
+
+ test -n "$prev" && \
+ func_fatal_help "the \`$prev' option requires an argument"
+
+ if test -z "$files"; then
+ if test -z "$dest"; then
+ func_fatal_help "no file or destination specified"
+ else
+ func_fatal_help "you must specify a destination"
+ fi
+ fi
+
+ # Strip any trailing slash from the destination.
+ func_stripname '' '/' "$dest"
+ dest=$func_stripname_result
+
+ # Check to see that the destination is a directory.
+ test -d "$dest" && isdir=yes
+ if test "$isdir" = yes; then
+ destdir="$dest"
+ destname=
+ else
+ func_dirname_and_basename "$dest" "" "."
+ destdir="$func_dirname_result"
+ destname="$func_basename_result"
+
+ # Not a directory, so check to see that there is only one file specified.
+ set dummy $files; shift
+ test "$#" -gt 1 && \
+ func_fatal_help "\`$dest' is not a directory"
+ fi
+ case $destdir in
+ [\\/]* | [A-Za-z]:[\\/]*) ;;
+ *)
+ for file in $files; do
+ case $file in
+ *.lo) ;;
+ *)
+ func_fatal_help "\`$destdir' must be an absolute directory name"
+ ;;
+ esac
+ done
+ ;;
+ esac
+
+ # This variable tells wrapper scripts just to set variables rather
+ # than running their programs.
+ libtool_install_magic="$magic"
+
+ staticlibs=
+ future_libdirs=
+ current_libdirs=
+ for file in $files; do
+
+ # Do each installation.
+ case $file in
+ *.$libext)
+ # Do the static libraries later.
+ staticlibs="$staticlibs $file"
+ ;;
+
+ *.la)
+ # Check to see that this really is a libtool archive.
+ func_lalib_unsafe_p "$file" \
+ || func_fatal_help "\`$file' is not a valid libtool archive"
+
+ library_names=
+ old_library=
+ relink_command=
+ func_source "$file"
+
+ # Add the libdir to current_libdirs if it is the destination.
+ if test "X$destdir" = "X$libdir"; then
+ case "$current_libdirs " in
+ *" $libdir "*) ;;
+ *) current_libdirs="$current_libdirs $libdir" ;;
+ esac
+ else
+ # Note the libdir as a future libdir.
+ case "$future_libdirs " in
+ *" $libdir "*) ;;
+ *) future_libdirs="$future_libdirs $libdir" ;;
+ esac
+ fi
+
+ func_dirname "$file" "/" ""
+ dir="$func_dirname_result"
+ dir="$dir$objdir"
+
+ if test -n "$relink_command"; then
+ # Determine the prefix the user has applied to our future dir.
+ inst_prefix_dir=`$ECHO "X$destdir" | $Xsed -e "s%$libdir\$%%"`
+
+ # Don't allow the user to place us outside of our expected
+ # location b/c this prevents finding dependent libraries that
+ # are installed to the same prefix.
+ # At present, this check doesn't affect windows .dll's that
+ # are installed into $libdir/../bin (currently, that works fine)
+ # but it's something to keep an eye on.
+ test "$inst_prefix_dir" = "$destdir" && \
+ func_fatal_error "error: cannot install \`$file' to a directory not ending in $libdir"
+
+ if test -n "$inst_prefix_dir"; then
+ # Stick the inst_prefix_dir data into the link command.
+ relink_command=`$ECHO "X$relink_command" | $Xsed -e "s%@inst_prefix_dir@%-inst-prefix-dir $inst_prefix_dir%"`
+ else
+ relink_command=`$ECHO "X$relink_command" | $Xsed -e "s%@inst_prefix_dir@%%"`
+ fi
+
+ func_warning "relinking \`$file'"
+ func_show_eval "$relink_command" \
+ 'func_fatal_error "error: relink \`$file'\'' with the above command before installing it"'
+ fi
+
+ # See the names of the shared library.
+ set dummy $library_names; shift
+ if test -n "$1"; then
+ realname="$1"
+ shift
+
+ srcname="$realname"
+ test -n "$relink_command" && srcname="$realname"T
+
+ # Install the shared library and build the symlinks.
+ func_show_eval "$install_prog $dir/$srcname $destdir/$realname" \
+ 'exit $?'
+ tstripme="$stripme"
+ case $host_os in
+ cygwin* | mingw* | pw32* | cegcc*)
+ case $realname in
+ *.dll.a)
+ tstripme=""
+ ;;
+ esac
+ ;;
+ esac
+ if test -n "$tstripme" && test -n "$striplib"; then
+ func_show_eval "$striplib $destdir/$realname" 'exit $?'
+ fi
+
+ if test "$#" -gt 0; then
+ # Delete the old symlinks, and create new ones.
+ # Try `ln -sf' first, because the `ln' binary might depend on
+ # the symlink we replace! Solaris /bin/ln does not understand -f,
+ # so we also need to try rm && ln -s.
+ for linkname
+ do
+ test "$linkname" != "$realname" \
+ && func_show_eval "(cd $destdir && { $LN_S -f $realname $linkname || { $RM $linkname && $LN_S $realname $linkname; }; })"
+ done
+ fi
+
+ # Do each command in the postinstall commands.
+ lib="$destdir/$realname"
+ func_execute_cmds "$postinstall_cmds" 'exit $?'
+ fi
+
+ # Install the pseudo-library for information purposes.
+ func_basename "$file"
+ name="$func_basename_result"
+ instname="$dir/$name"i
+ func_show_eval "$install_prog $instname $destdir/$name" 'exit $?'
+
+ # Maybe install the static library, too.
+ test -n "$old_library" && staticlibs="$staticlibs $dir/$old_library"
+ ;;
+
+ *.lo)
+ # Install (i.e. copy) a libtool object.
+
+ # Figure out destination file name, if it wasn't already specified.
+ if test -n "$destname"; then
+ destfile="$destdir/$destname"
+ else
+ func_basename "$file"
+ destfile="$func_basename_result"
+ destfile="$destdir/$destfile"
+ fi
+
+ # Deduce the name of the destination old-style object file.
+ case $destfile in
+ *.lo)
+ func_lo2o "$destfile"
+ staticdest=$func_lo2o_result
+ ;;
+ *.$objext)
+ staticdest="$destfile"
+ destfile=
+ ;;
+ *)
+ func_fatal_help "cannot copy a libtool object to \`$destfile'"
+ ;;
+ esac
+
+ # Install the libtool object if requested.
+ test -n "$destfile" && \
+ func_show_eval "$install_prog $file $destfile" 'exit $?'
+
+ # Install the old object if enabled.
+ if test "$build_old_libs" = yes; then
+ # Deduce the name of the old-style object file.
+ func_lo2o "$file"
+ staticobj=$func_lo2o_result
+ func_show_eval "$install_prog \$staticobj \$staticdest" 'exit $?'
+ fi
+ exit $EXIT_SUCCESS
+ ;;
+
+ *)
+ # Figure out destination file name, if it wasn't already specified.
+ if test -n "$destname"; then
+ destfile="$destdir/$destname"
+ else
+ func_basename "$file"
+ destfile="$func_basename_result"
+ destfile="$destdir/$destfile"
+ fi
+
+ # If the file is missing, and there is a .exe on the end, strip it
+ # because it is most likely a libtool script we actually want to
+ # install
+ stripped_ext=""
+ case $file in
+ *.exe)
+ if test ! -f "$file"; then
+ func_stripname '' '.exe' "$file"
+ file=$func_stripname_result
+ stripped_ext=".exe"
+ fi
+ ;;
+ esac
+
+ # Do a test to see if this is really a libtool program.
+ case $host in
+ *cygwin* | *mingw*)
+ if func_ltwrapper_executable_p "$file"; then
+ func_ltwrapper_scriptname "$file"
+ wrapper=$func_ltwrapper_scriptname_result
+ else
+ func_stripname '' '.exe' "$file"
+ wrapper=$func_stripname_result
+ fi
+ ;;
+ *)
+ wrapper=$file
+ ;;
+ esac
+ if func_ltwrapper_script_p "$wrapper"; then
+ notinst_deplibs=
+ relink_command=
+
+ func_source "$wrapper"
+
+ # Check the variables that should have been set.
+ test -z "$generated_by_libtool_version" && \
+ func_fatal_error "invalid libtool wrapper script \`$wrapper'"
+
+ finalize=yes
+ for lib in $notinst_deplibs; do
+ # Check to see that each library is installed.
+ libdir=
+ if test -f "$lib"; then
+ func_source "$lib"
+ fi
+ libfile="$libdir/"`$ECHO "X$lib" | $Xsed -e 's%^.*/%%g'` ### testsuite: skip nested quoting test
+ if test -n "$libdir" && test ! -f "$libfile"; then
+ func_warning "\`$lib' has not been installed in \`$libdir'"
+ finalize=no
+ fi
+ done
+
+ relink_command=
+ func_source "$wrapper"
+
+ outputname=
+ if test "$fast_install" = no && test -n "$relink_command"; then
+ $opt_dry_run || {
+ if test "$finalize" = yes; then
+ tmpdir=`func_mktempdir`
+ func_basename "$file$stripped_ext"
+ file="$func_basename_result"
+ outputname="$tmpdir/$file"
+ # Replace the output file specification.
+ relink_command=`$ECHO "X$relink_command" | $Xsed -e 's%@OUTPUT@%'"$outputname"'%g'`
+
+ $opt_silent || {
+ func_quote_for_expand "$relink_command"
+ eval "func_echo $func_quote_for_expand_result"
+ }
+ if eval "$relink_command"; then :
+ else
+ func_error "error: relink \`$file' with the above command before installing it"
+ $opt_dry_run || ${RM}r "$tmpdir"
+ continue
+ fi
+ file="$outputname"
+ else
+ func_warning "cannot relink \`$file'"
+ fi
+ }
+ else
+ # Install the binary that we compiled earlier.
+ file=`$ECHO "X$file$stripped_ext" | $Xsed -e "s%\([^/]*\)$%$objdir/\1%"`
+ fi
+ fi
+
+ # remove .exe since cygwin /usr/bin/install will append another
+ # one anyway
+ case $install_prog,$host in
+ */usr/bin/install*,*cygwin*)
+ case $file:$destfile in
+ *.exe:*.exe)
+ # this is ok
+ ;;
+ *.exe:*)
+ destfile=$destfile.exe
+ ;;
+ *:*.exe)
+ func_stripname '' '.exe' "$destfile"
+ destfile=$func_stripname_result
+ ;;
+ esac
+ ;;
+ esac
+ func_show_eval "$install_prog\$stripme \$file \$destfile" 'exit $?'
+ $opt_dry_run || if test -n "$outputname"; then
+ ${RM}r "$tmpdir"
+ fi
+ ;;
+ esac
+ done
+
+ for file in $staticlibs; do
+ func_basename "$file"
+ name="$func_basename_result"
+
+ # Set up the ranlib parameters.
+ oldlib="$destdir/$name"
+
+ func_show_eval "$install_prog \$file \$oldlib" 'exit $?'
+
+ if test -n "$stripme" && test -n "$old_striplib"; then
+ func_show_eval "$old_striplib $oldlib" 'exit $?'
+ fi
+
+ # Do each command in the postinstall commands.
+ func_execute_cmds "$old_postinstall_cmds" 'exit $?'
+ done
+
+ test -n "$future_libdirs" && \
+ func_warning "remember to run \`$progname --finish$future_libdirs'"
+
+ if test -n "$current_libdirs"; then
+ # Maybe just do a dry run.
+ $opt_dry_run && current_libdirs=" -n$current_libdirs"
+ exec_cmd='$SHELL $progpath $preserve_args --finish$current_libdirs'
+ else
+ exit $EXIT_SUCCESS
+ fi
+}
+
+test "$mode" = install && func_mode_install ${1+"$@"}
+
+
+# func_generate_dlsyms outputname originator pic_p
+# Extract symbols from dlprefiles and create ${outputname}S.o with
+# a dlpreopen symbol table.
+func_generate_dlsyms ()
+{
+ $opt_debug
+ my_outputname="$1"
+ my_originator="$2"
+ my_pic_p="${3-no}"
+ my_prefix=`$ECHO "$my_originator" | sed 's%[^a-zA-Z0-9]%_%g'`
+ my_dlsyms=
+
+ if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then
+ if test -n "$NM" && test -n "$global_symbol_pipe"; then
+ my_dlsyms="${my_outputname}S.c"
+ else
+ func_error "not configured to extract global symbols from dlpreopened files"
+ fi
+ fi
+
+ if test -n "$my_dlsyms"; then
+ case $my_dlsyms in
+ "") ;;
+ *.c)
+ # Discover the nlist of each of the dlfiles.
+ nlist="$output_objdir/${my_outputname}.nm"
+
+ func_show_eval "$RM $nlist ${nlist}S ${nlist}T"
+
+ # Parse the name list into a source file.
+ func_verbose "creating $output_objdir/$my_dlsyms"
+
+ $opt_dry_run || $ECHO > "$output_objdir/$my_dlsyms" "\
+/* $my_dlsyms - symbol resolution table for \`$my_outputname' dlsym emulation. */
+/* Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION */
+
+#ifdef __cplusplus
+extern \"C\" {
+#endif
+
+/* External symbol declarations for the compiler. */\
+"
+
+ if test "$dlself" = yes; then
+ func_verbose "generating symbol list for \`$output'"
+
+ $opt_dry_run || echo ': @PROGRAM@ ' > "$nlist"
+
+ # Add our own program objects to the symbol list.
+ progfiles=`$ECHO "X$objs$old_deplibs" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
+ for progfile in $progfiles; do
+ func_verbose "extracting global C symbols from \`$progfile'"
+ $opt_dry_run || eval "$NM $progfile | $global_symbol_pipe >> '$nlist'"
+ done
+
+ if test -n "$exclude_expsyms"; then
+ $opt_dry_run || {
+ eval '$EGREP -v " ($exclude_expsyms)$" "$nlist" > "$nlist"T'
+ eval '$MV "$nlist"T "$nlist"'
+ }
+ fi
+
+ if test -n "$export_symbols_regex"; then
+ $opt_dry_run || {
+ eval '$EGREP -e "$export_symbols_regex" "$nlist" > "$nlist"T'
+ eval '$MV "$nlist"T "$nlist"'
+ }
+ fi
+
+ # Prepare the list of exported symbols
+ if test -z "$export_symbols"; then
+ export_symbols="$output_objdir/$outputname.exp"
+ $opt_dry_run || {
+ $RM $export_symbols
+ eval "${SED} -n -e '/^: @PROGRAM@ $/d' -e 's/^.* \(.*\)$/\1/p' "'< "$nlist" > "$export_symbols"'
+ case $host in
+ *cygwin* | *mingw* | *cegcc* )
+ eval "echo EXPORTS "'> "$output_objdir/$outputname.def"'
+ eval 'cat "$export_symbols" >> "$output_objdir/$outputname.def"'
+ ;;
+ esac
+ }
+ else
+ $opt_dry_run || {
+ eval "${SED} -e 's/\([].[*^$]\)/\\\\\1/g' -e 's/^/ /' -e 's/$/$/'"' < "$export_symbols" > "$output_objdir/$outputname.exp"'
+ eval '$GREP -f "$output_objdir/$outputname.exp" < "$nlist" > "$nlist"T'
+ eval '$MV "$nlist"T "$nlist"'
+ case $host in
+ *cygwin | *mingw* | *cegcc* )
+ eval "echo EXPORTS "'> "$output_objdir/$outputname.def"'
+ eval 'cat "$nlist" >> "$output_objdir/$outputname.def"'
+ ;;
+ esac
+ }
+ fi
+ fi
+
+ for dlprefile in $dlprefiles; do
+ func_verbose "extracting global C symbols from \`$dlprefile'"
+ func_basename "$dlprefile"
+ name="$func_basename_result"
+ $opt_dry_run || {
+ eval '$ECHO ": $name " >> "$nlist"'
+ eval "$NM $dlprefile 2>/dev/null | $global_symbol_pipe >> '$nlist'"
+ }
+ done
+
+ $opt_dry_run || {
+ # Make sure we have at least an empty file.
+ test -f "$nlist" || : > "$nlist"
+
+ if test -n "$exclude_expsyms"; then
+ $EGREP -v " ($exclude_expsyms)$" "$nlist" > "$nlist"T
+ $MV "$nlist"T "$nlist"
+ fi
+
+ # Try sorting and uniquifying the output.
+ if $GREP -v "^: " < "$nlist" |
+ if sort -k 3 </dev/null >/dev/null 2>&1; then
+ sort -k 3
+ else
+ sort +2
+ fi |
+ uniq > "$nlist"S; then
+ :
+ else
+ $GREP -v "^: " < "$nlist" > "$nlist"S
+ fi
+
+ if test -f "$nlist"S; then
+ eval "$global_symbol_to_cdecl"' < "$nlist"S >> "$output_objdir/$my_dlsyms"'
+ else
+ $ECHO '/* NONE */' >> "$output_objdir/$my_dlsyms"
+ fi
+
+ $ECHO >> "$output_objdir/$my_dlsyms" "\
+
+/* The mapping between symbol names and symbols. */
+typedef struct {
+ const char *name;
+ void *address;
+} lt_dlsymlist;
+"
+ case $host in
+ *cygwin* | *mingw* | *cegcc* )
+ $ECHO >> "$output_objdir/$my_dlsyms" "\
+/* DATA imports from DLLs on WIN32 con't be const, because
+ runtime relocations are performed -- see ld's documentation
+ on pseudo-relocs. */"
+ lt_dlsym_const= ;;
+ *osf5*)
+ echo >> "$output_objdir/$my_dlsyms" "\
+/* This system does not cope well with relocations in const data */"
+ lt_dlsym_const= ;;
+ *)
+ lt_dlsym_const=const ;;
+ esac
+
+ $ECHO >> "$output_objdir/$my_dlsyms" "\
+extern $lt_dlsym_const lt_dlsymlist
+lt_${my_prefix}_LTX_preloaded_symbols[];
+$lt_dlsym_const lt_dlsymlist
+lt_${my_prefix}_LTX_preloaded_symbols[] =
+{\
+ { \"$my_originator\", (void *) 0 },"
+
+ case $need_lib_prefix in
+ no)
+ eval "$global_symbol_to_c_name_address" < "$nlist" >> "$output_objdir/$my_dlsyms"
+ ;;
+ *)
+ eval "$global_symbol_to_c_name_address_lib_prefix" < "$nlist" >> "$output_objdir/$my_dlsyms"
+ ;;
+ esac
+ $ECHO >> "$output_objdir/$my_dlsyms" "\
+ {0, (void *) 0}
+};
+
+/* This works around a problem in FreeBSD linker */
+#ifdef FREEBSD_WORKAROUND
+static const void *lt_preloaded_setup() {
+ return lt_${my_prefix}_LTX_preloaded_symbols;
+}
+#endif
+
+#ifdef __cplusplus
+}
+#endif\
+"
+ } # !$opt_dry_run
+
+ pic_flag_for_symtable=
+ case "$compile_command " in
+ *" -static "*) ;;
+ *)
+ case $host in
+ # compiling the symbol table file with pic_flag works around
+ # a FreeBSD bug that causes programs to crash when -lm is
+ # linked before any other PIC object. But we must not use
+ # pic_flag when linking with -static. The problem exists in
+ # FreeBSD 2.2.6 and is fixed in FreeBSD 3.1.
+ *-*-freebsd2*|*-*-freebsd3.0*|*-*-freebsdelf3.0*)
+ pic_flag_for_symtable=" $pic_flag -DFREEBSD_WORKAROUND" ;;
+ *-*-hpux*)
+ pic_flag_for_symtable=" $pic_flag" ;;
+ *)
+ if test "X$my_pic_p" != Xno; then
+ pic_flag_for_symtable=" $pic_flag"
+ fi
+ ;;
+ esac
+ ;;
+ esac
+ symtab_cflags=
+ for arg in $LTCFLAGS; do
+ case $arg in
+ -pie | -fpie | -fPIE) ;;
+ *) symtab_cflags="$symtab_cflags $arg" ;;
+ esac
+ done
+
+ # Now compile the dynamic symbol file.
+ func_show_eval '(cd $output_objdir && $LTCC$symtab_cflags -c$no_builtin_flag$pic_flag_for_symtable "$my_dlsyms")' 'exit $?'
+
+ # Clean up the generated files.
+ func_show_eval '$RM "$output_objdir/$my_dlsyms" "$nlist" "${nlist}S" "${nlist}T"'
+
+ # Transform the symbol file into the correct name.
+ symfileobj="$output_objdir/${my_outputname}S.$objext"
+ case $host in
+ *cygwin* | *mingw* | *cegcc* )
+ if test -f "$output_objdir/$my_outputname.def"; then
+ compile_command=`$ECHO "X$compile_command" | $Xsed -e "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"`
+ finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s%@SYMFILE@%$output_objdir/$my_outputname.def $symfileobj%"`
+ else
+ compile_command=`$ECHO "X$compile_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
+ finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
+ fi
+ ;;
+ *)
+ compile_command=`$ECHO "X$compile_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
+ finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s%@SYMFILE@%$symfileobj%"`
+ ;;
+ esac
+ ;;
+ *)
+ func_fatal_error "unknown suffix for \`$my_dlsyms'"
+ ;;
+ esac
+ else
+ # We keep going just in case the user didn't refer to
+ # lt_preloaded_symbols. The linker will fail if global_symbol_pipe
+ # really was required.
+
+ # Nullify the symbol file.
+ compile_command=`$ECHO "X$compile_command" | $Xsed -e "s% @SYMFILE@%%"`
+ finalize_command=`$ECHO "X$finalize_command" | $Xsed -e "s% @SYMFILE@%%"`
+ fi
+}
+
+# func_win32_libid arg
+# return the library type of file 'arg'
+#
+# Need a lot of goo to handle *both* DLLs and import libs
+# Has to be a shell function in order to 'eat' the argument
+# that is supplied when $file_magic_command is called.
+func_win32_libid ()
+{
+ $opt_debug
+ win32_libid_type="unknown"
+ win32_fileres=`file -L $1 2>/dev/null`
+ case $win32_fileres in
+ *ar\ archive\ import\ library*) # definitely import
+ win32_libid_type="x86 archive import"
+ ;;
+ *ar\ archive*) # could be an import, or static
+ if eval $OBJDUMP -f $1 | $SED -e '10q' 2>/dev/null |
+ $EGREP 'file format pe-i386(.*architecture: i386)?' >/dev/null ; then
+ win32_nmres=`eval $NM -f posix -A $1 |
+ $SED -n -e '
+ 1,100{
+ / I /{
+ s,.*,import,
+ p
+ q
+ }
+ }'`
+ case $win32_nmres in
+ import*) win32_libid_type="x86 archive import";;
+ *) win32_libid_type="x86 archive static";;
+ esac
+ fi
+ ;;
+ *DLL*)
+ win32_libid_type="x86 DLL"
+ ;;
+ *executable*) # but shell scripts are "executable" too...
+ case $win32_fileres in
+ *MS\ Windows\ PE\ Intel*)
+ win32_libid_type="x86 DLL"
+ ;;
+ esac
+ ;;
+ esac
+ $ECHO "$win32_libid_type"
+}
+
+
+
+# func_extract_an_archive dir oldlib
+func_extract_an_archive ()
+{
+ $opt_debug
+ f_ex_an_ar_dir="$1"; shift
+ f_ex_an_ar_oldlib="$1"
+ func_show_eval "(cd \$f_ex_an_ar_dir && $AR x \"\$f_ex_an_ar_oldlib\")" 'exit $?'
+ if ($AR t "$f_ex_an_ar_oldlib" | sort | sort -uc >/dev/null 2>&1); then
+ :
+ else
+ func_fatal_error "object name conflicts in archive: $f_ex_an_ar_dir/$f_ex_an_ar_oldlib"
+ fi
+}
+
+
+# func_extract_archives gentop oldlib ...
+func_extract_archives ()
+{
+ $opt_debug
+ my_gentop="$1"; shift
+ my_oldlibs=${1+"$@"}
+ my_oldobjs=""
+ my_xlib=""
+ my_xabs=""
+ my_xdir=""
+
+ for my_xlib in $my_oldlibs; do
+ # Extract the objects.
+ case $my_xlib in
+ [\\/]* | [A-Za-z]:[\\/]*) my_xabs="$my_xlib" ;;
+ *) my_xabs=`pwd`"/$my_xlib" ;;
+ esac
+ func_basename "$my_xlib"
+ my_xlib="$func_basename_result"
+ my_xlib_u=$my_xlib
+ while :; do
+ case " $extracted_archives " in
+ *" $my_xlib_u "*)
+ func_arith $extracted_serial + 1
+ extracted_serial=$func_arith_result
+ my_xlib_u=lt$extracted_serial-$my_xlib ;;
+ *) break ;;
+ esac
+ done
+ extracted_archives="$extracted_archives $my_xlib_u"
+ my_xdir="$my_gentop/$my_xlib_u"
+
+ func_mkdir_p "$my_xdir"
+
+ case $host in
+ *-darwin*)
+ func_verbose "Extracting $my_xabs"
+ # Do not bother doing anything if just a dry run
+ $opt_dry_run || {
+ darwin_orig_dir=`pwd`
+ cd $my_xdir || exit $?
+ darwin_archive=$my_xabs
+ darwin_curdir=`pwd`
+ darwin_base_archive=`basename "$darwin_archive"`
+ darwin_arches=`$LIPO -info "$darwin_archive" 2>/dev/null | $GREP Architectures 2>/dev/null || true`
+ if test -n "$darwin_arches"; then
+ darwin_arches=`$ECHO "$darwin_arches" | $SED -e 's/.*are://'`
+ darwin_arch=
+ func_verbose "$darwin_base_archive has multiple architectures $darwin_arches"
+ for darwin_arch in $darwin_arches ; do
+ func_mkdir_p "unfat-$$/${darwin_base_archive}-${darwin_arch}"
+ $LIPO -thin $darwin_arch -output "unfat-$$/${darwin_base_archive}-${darwin_arch}/${darwin_base_archive}" "${darwin_archive}"
+ cd "unfat-$$/${darwin_base_archive}-${darwin_arch}"
+ func_extract_an_archive "`pwd`" "${darwin_base_archive}"
+ cd "$darwin_curdir"
+ $RM "unfat-$$/${darwin_base_archive}-${darwin_arch}/${darwin_base_archive}"
+ done # $darwin_arches
+ ## Okay now we've a bunch of thin objects, gotta fatten them up :)
+ darwin_filelist=`find unfat-$$ -type f -name \*.o -print -o -name \*.lo -print | $SED -e "$basename" | sort -u`
+ darwin_file=
+ darwin_files=
+ for darwin_file in $darwin_filelist; do
+ darwin_files=`find unfat-$$ -name $darwin_file -print | $NL2SP`
+ $LIPO -create -output "$darwin_file" $darwin_files
+ done # $darwin_filelist
+ $RM -rf unfat-$$
+ cd "$darwin_orig_dir"
+ else
+ cd $darwin_orig_dir
+ func_extract_an_archive "$my_xdir" "$my_xabs"
+ fi # $darwin_arches
+ } # !$opt_dry_run
+ ;;
+ *)
+ func_extract_an_archive "$my_xdir" "$my_xabs"
+ ;;
+ esac
+ my_oldobjs="$my_oldobjs "`find $my_xdir -name \*.$objext -print -o -name \*.lo -print | $NL2SP`
+ done
+
+ func_extract_archives_result="$my_oldobjs"
+}
+
+
+
+# func_emit_wrapper_part1 [arg=no]
+#
+# Emit the first part of a libtool wrapper script on stdout.
+# For more information, see the description associated with
+# func_emit_wrapper(), below.
+func_emit_wrapper_part1 ()
+{
+ func_emit_wrapper_part1_arg1=no
+ if test -n "$1" ; then
+ func_emit_wrapper_part1_arg1=$1
+ fi
+
+ $ECHO "\
+#! $SHELL
+
+# $output - temporary wrapper script for $objdir/$outputname
+# Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION
+#
+# The $output program cannot be directly executed until all the libtool
+# libraries that it depends on are installed.
+#
+# This wrapper script should never be moved out of the build directory.
+# If it is, it will not operate correctly.
+
+# Sed substitution that helps us do robust quoting. It backslashifies
+# metacharacters that are still active within double-quoted strings.
+Xsed='${SED} -e 1s/^X//'
+sed_quote_subst='$sed_quote_subst'
+
+# Be Bourne compatible
+if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then
+ emulate sh
+ NULLCMD=:
+ # Zsh 3.x and 4.x performs word splitting on \${1+\"\$@\"}, which
+ # is contrary to our usage. Disable this feature.
+ alias -g '\${1+\"\$@\"}'='\"\$@\"'
+ setopt NO_GLOB_SUBST
+else
+ case \`(set -o) 2>/dev/null\` in *posix*) set -o posix;; esac
+fi
+BIN_SH=xpg4; export BIN_SH # for Tru64
+DUALCASE=1; export DUALCASE # for MKS sh
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+relink_command=\"$relink_command\"
+
+# This environment variable determines our operation mode.
+if test \"\$libtool_install_magic\" = \"$magic\"; then
+ # install mode needs the following variables:
+ generated_by_libtool_version='$macro_version'
+ notinst_deplibs='$notinst_deplibs'
+else
+ # When we are sourced in execute mode, \$file and \$ECHO are already set.
+ if test \"\$libtool_execute_magic\" != \"$magic\"; then
+ ECHO=\"$qecho\"
+ file=\"\$0\"
+ # Make sure echo works.
+ if test \"X\$1\" = X--no-reexec; then
+ # Discard the --no-reexec flag, and continue.
+ shift
+ elif test \"X\`{ \$ECHO '\t'; } 2>/dev/null\`\" = 'X\t'; then
+ # Yippee, \$ECHO works!
+ :
+ else
+ # Restart under the correct shell, and then maybe \$ECHO will work.
+ exec $SHELL \"\$0\" --no-reexec \${1+\"\$@\"}
+ fi
+ fi\
+"
+ $ECHO "\
+
+ # Find the directory that this script lives in.
+ thisdir=\`\$ECHO \"X\$file\" | \$Xsed -e 's%/[^/]*$%%'\`
+ test \"x\$thisdir\" = \"x\$file\" && thisdir=.
+
+ # Follow symbolic links until we get to the real thisdir.
+ file=\`ls -ld \"\$file\" | ${SED} -n 's/.*-> //p'\`
+ while test -n \"\$file\"; do
+ destdir=\`\$ECHO \"X\$file\" | \$Xsed -e 's%/[^/]*\$%%'\`
+
+ # If there was a directory component, then change thisdir.
+ if test \"x\$destdir\" != \"x\$file\"; then
+ case \"\$destdir\" in
+ [\\\\/]* | [A-Za-z]:[\\\\/]*) thisdir=\"\$destdir\" ;;
+ *) thisdir=\"\$thisdir/\$destdir\" ;;
+ esac
+ fi
+
+ file=\`\$ECHO \"X\$file\" | \$Xsed -e 's%^.*/%%'\`
+ file=\`ls -ld \"\$thisdir/\$file\" | ${SED} -n 's/.*-> //p'\`
+ done
+"
+}
+# end: func_emit_wrapper_part1
+
+# func_emit_wrapper_part2 [arg=no]
+#
+# Emit the second part of a libtool wrapper script on stdout.
+# For more information, see the description associated with
+# func_emit_wrapper(), below.
+func_emit_wrapper_part2 ()
+{
+ func_emit_wrapper_part2_arg1=no
+ if test -n "$1" ; then
+ func_emit_wrapper_part2_arg1=$1
+ fi
+
+ $ECHO "\
+
+ # Usually 'no', except on cygwin/mingw when embedded into
+ # the cwrapper.
+ WRAPPER_SCRIPT_BELONGS_IN_OBJDIR=$func_emit_wrapper_part2_arg1
+ if test \"\$WRAPPER_SCRIPT_BELONGS_IN_OBJDIR\" = \"yes\"; then
+ # special case for '.'
+ if test \"\$thisdir\" = \".\"; then
+ thisdir=\`pwd\`
+ fi
+ # remove .libs from thisdir
+ case \"\$thisdir\" in
+ *[\\\\/]$objdir ) thisdir=\`\$ECHO \"X\$thisdir\" | \$Xsed -e 's%[\\\\/][^\\\\/]*$%%'\` ;;
+ $objdir ) thisdir=. ;;
+ esac
+ fi
+
+ # Try to get the absolute directory name.
+ absdir=\`cd \"\$thisdir\" && pwd\`
+ test -n \"\$absdir\" && thisdir=\"\$absdir\"
+"
+
+ if test "$fast_install" = yes; then
+ $ECHO "\
+ program=lt-'$outputname'$exeext
+ progdir=\"\$thisdir/$objdir\"
+
+ if test ! -f \"\$progdir/\$program\" ||
+ { file=\`ls -1dt \"\$progdir/\$program\" \"\$progdir/../\$program\" 2>/dev/null | ${SED} 1q\`; \\
+ test \"X\$file\" != \"X\$progdir/\$program\"; }; then
+
+ file=\"\$\$-\$program\"
+
+ if test ! -d \"\$progdir\"; then
+ $MKDIR \"\$progdir\"
+ else
+ $RM \"\$progdir/\$file\"
+ fi"
+
+ $ECHO "\
+
+ # relink executable if necessary
+ if test -n \"\$relink_command\"; then
+ if relink_command_output=\`eval \$relink_command 2>&1\`; then :
+ else
+ $ECHO \"\$relink_command_output\" >&2
+ $RM \"\$progdir/\$file\"
+ exit 1
+ fi
+ fi
+
+ $MV \"\$progdir/\$file\" \"\$progdir/\$program\" 2>/dev/null ||
+ { $RM \"\$progdir/\$program\";
+ $MV \"\$progdir/\$file\" \"\$progdir/\$program\"; }
+ $RM \"\$progdir/\$file\"
+ fi"
+ else
+ $ECHO "\
+ program='$outputname'
+ progdir=\"\$thisdir/$objdir\"
+"
+ fi
+
+ $ECHO "\
+
+ if test -f \"\$progdir/\$program\"; then"
+
+ # Export our shlibpath_var if we have one.
+ if test "$shlibpath_overrides_runpath" = yes && test -n "$shlibpath_var" && test -n "$temp_rpath"; then
+ $ECHO "\
+ # Add our own library path to $shlibpath_var
+ $shlibpath_var=\"$temp_rpath\$$shlibpath_var\"
+
+ # Some systems cannot cope with colon-terminated $shlibpath_var
+ # The second colon is a workaround for a bug in BeOS R4 sed
+ $shlibpath_var=\`\$ECHO \"X\$$shlibpath_var\" | \$Xsed -e 's/::*\$//'\`
+
+ export $shlibpath_var
+"
+ fi
+
+ # fixup the dll searchpath if we need to.
+ if test -n "$dllsearchpath"; then
+ $ECHO "\
+ # Add the dll search path components to the executable PATH
+ PATH=$dllsearchpath:\$PATH
+"
+ fi
+
+ $ECHO "\
+ if test \"\$libtool_execute_magic\" != \"$magic\"; then
+ # Run the actual program with our arguments.
+"
+ case $host in
+ # Backslashes separate directories on plain windows
+ *-*-mingw | *-*-os2* | *-cegcc*)
+ $ECHO "\
+ exec \"\$progdir\\\\\$program\" \${1+\"\$@\"}
+"
+ ;;
+
+ *)
+ $ECHO "\
+ exec \"\$progdir/\$program\" \${1+\"\$@\"}
+"
+ ;;
+ esac
+ $ECHO "\
+ \$ECHO \"\$0: cannot exec \$program \$*\" 1>&2
+ exit 1
+ fi
+ else
+ # The program doesn't exist.
+ \$ECHO \"\$0: error: \\\`\$progdir/\$program' does not exist\" 1>&2
+ \$ECHO \"This script is just a wrapper for \$program.\" 1>&2
+ $ECHO \"See the $PACKAGE documentation for more information.\" 1>&2
+ exit 1
+ fi
+fi\
+"
+}
+# end: func_emit_wrapper_part2
+
+
+# func_emit_wrapper [arg=no]
+#
+# Emit a libtool wrapper script on stdout.
+# Don't directly open a file because we may want to
+# incorporate the script contents within a cygwin/mingw
+# wrapper executable. Must ONLY be called from within
+# func_mode_link because it depends on a number of variables
+# set therein.
+#
+# ARG is the value that the WRAPPER_SCRIPT_BELONGS_IN_OBJDIR
+# variable will take. If 'yes', then the emitted script
+# will assume that the directory in which it is stored is
+# the $objdir directory. This is a cygwin/mingw-specific
+# behavior.
+func_emit_wrapper ()
+{
+ func_emit_wrapper_arg1=no
+ if test -n "$1" ; then
+ func_emit_wrapper_arg1=$1
+ fi
+
+ # split this up so that func_emit_cwrapperexe_src
+ # can call each part independently.
+ func_emit_wrapper_part1 "${func_emit_wrapper_arg1}"
+ func_emit_wrapper_part2 "${func_emit_wrapper_arg1}"
+}
+
+
+# func_to_host_path arg
+#
+# Convert paths to host format when used with build tools.
+# Intended for use with "native" mingw (where libtool itself
+# is running under the msys shell), or in the following cross-
+# build environments:
+# $build $host
+# mingw (msys) mingw [e.g. native]
+# cygwin mingw
+# *nix + wine mingw
+# where wine is equipped with the `winepath' executable.
+# In the native mingw case, the (msys) shell automatically
+# converts paths for any non-msys applications it launches,
+# but that facility isn't available from inside the cwrapper.
+# Similar accommodations are necessary for $host mingw and
+# $build cygwin. Calling this function does no harm for other
+# $host/$build combinations not listed above.
+#
+# ARG is the path (on $build) that should be converted to
+# the proper representation for $host. The result is stored
+# in $func_to_host_path_result.
+func_to_host_path ()
+{
+ func_to_host_path_result="$1"
+ if test -n "$1" ; then
+ case $host in
+ *mingw* )
+ lt_sed_naive_backslashify='s|\\\\*|\\|g;s|/|\\|g;s|\\|\\\\|g'
+ case $build in
+ *mingw* ) # actually, msys
+ # awkward: cmd appends spaces to result
+ lt_sed_strip_trailing_spaces="s/[ ]*\$//"
+ func_to_host_path_tmp1=`( cmd //c echo "$1" |\
+ $SED -e "$lt_sed_strip_trailing_spaces" ) 2>/dev/null || echo ""`
+ func_to_host_path_result=`echo "$func_to_host_path_tmp1" |\
+ $SED -e "$lt_sed_naive_backslashify"`
+ ;;
+ *cygwin* )
+ func_to_host_path_tmp1=`cygpath -w "$1"`
+ func_to_host_path_result=`echo "$func_to_host_path_tmp1" |\
+ $SED -e "$lt_sed_naive_backslashify"`
+ ;;
+ * )
+ # Unfortunately, winepath does not exit with a non-zero
+ # error code, so we are forced to check the contents of
+ # stdout. On the other hand, if the command is not
+ # found, the shell will set an exit code of 127 and print
+ # *an error message* to stdout. So we must check for both
+ # error code of zero AND non-empty stdout, which explains
+ # the odd construction:
+ func_to_host_path_tmp1=`winepath -w "$1" 2>/dev/null`
+ if test "$?" -eq 0 && test -n "${func_to_host_path_tmp1}"; then
+ func_to_host_path_result=`echo "$func_to_host_path_tmp1" |\
+ $SED -e "$lt_sed_naive_backslashify"`
+ else
+ # Allow warning below.
+ func_to_host_path_result=""
+ fi
+ ;;
+ esac
+ if test -z "$func_to_host_path_result" ; then
+ func_error "Could not determine host path corresponding to"
+ func_error " '$1'"
+ func_error "Continuing, but uninstalled executables may not work."
+ # Fallback:
+ func_to_host_path_result="$1"
+ fi
+ ;;
+ esac
+ fi
+}
+# end: func_to_host_path
+
+# func_to_host_pathlist arg
+#
+# Convert pathlists to host format when used with build tools.
+# See func_to_host_path(), above. This function supports the
+# following $build/$host combinations (but does no harm for
+# combinations not listed here):
+# $build $host
+# mingw (msys) mingw [e.g. native]
+# cygwin mingw
+# *nix + wine mingw
+#
+# Path separators are also converted from $build format to
+# $host format. If ARG begins or ends with a path separator
+# character, it is preserved (but converted to $host format)
+# on output.
+#
+# ARG is a pathlist (on $build) that should be converted to
+# the proper representation on $host. The result is stored
+# in $func_to_host_pathlist_result.
+func_to_host_pathlist ()
+{
+ func_to_host_pathlist_result="$1"
+ if test -n "$1" ; then
+ case $host in
+ *mingw* )
+ lt_sed_naive_backslashify='s|\\\\*|\\|g;s|/|\\|g;s|\\|\\\\|g'
+ # Remove leading and trailing path separator characters from
+ # ARG. msys behavior is inconsistent here, cygpath turns them
+ # into '.;' and ';.', and winepath ignores them completely.
+ func_to_host_pathlist_tmp2="$1"
+ # Once set for this call, this variable should not be
+ # reassigned. It is used in tha fallback case.
+ func_to_host_pathlist_tmp1=`echo "$func_to_host_pathlist_tmp2" |\
+ $SED -e 's|^:*||' -e 's|:*$||'`
+ case $build in
+ *mingw* ) # Actually, msys.
+ # Awkward: cmd appends spaces to result.
+ lt_sed_strip_trailing_spaces="s/[ ]*\$//"
+ func_to_host_pathlist_tmp2=`( cmd //c echo "$func_to_host_pathlist_tmp1" |\
+ $SED -e "$lt_sed_strip_trailing_spaces" ) 2>/dev/null || echo ""`
+ func_to_host_pathlist_result=`echo "$func_to_host_pathlist_tmp2" |\
+ $SED -e "$lt_sed_naive_backslashify"`
+ ;;
+ *cygwin* )
+ func_to_host_pathlist_tmp2=`cygpath -w -p "$func_to_host_pathlist_tmp1"`
+ func_to_host_pathlist_result=`echo "$func_to_host_pathlist_tmp2" |\
+ $SED -e "$lt_sed_naive_backslashify"`
+ ;;
+ * )
+ # unfortunately, winepath doesn't convert pathlists
+ func_to_host_pathlist_result=""
+ func_to_host_pathlist_oldIFS=$IFS
+ IFS=:
+ for func_to_host_pathlist_f in $func_to_host_pathlist_tmp1 ; do
+ IFS=$func_to_host_pathlist_oldIFS
+ if test -n "$func_to_host_pathlist_f" ; then
+ func_to_host_path "$func_to_host_pathlist_f"
+ if test -n "$func_to_host_path_result" ; then
+ if test -z "$func_to_host_pathlist_result" ; then
+ func_to_host_pathlist_result="$func_to_host_path_result"
+ else
+ func_to_host_pathlist_result="$func_to_host_pathlist_result;$func_to_host_path_result"
+ fi
+ fi
+ fi
+ IFS=:
+ done
+ IFS=$func_to_host_pathlist_oldIFS
+ ;;
+ esac
+ if test -z "$func_to_host_pathlist_result" ; then
+ func_error "Could not determine the host path(s) corresponding to"
+ func_error " '$1'"
+ func_error "Continuing, but uninstalled executables may not work."
+ # Fallback. This may break if $1 contains DOS-style drive
+ # specifications. The fix is not to complicate the expression
+ # below, but for the user to provide a working wine installation
+ # with winepath so that path translation in the cross-to-mingw
+ # case works properly.
+ lt_replace_pathsep_nix_to_dos="s|:|;|g"
+ func_to_host_pathlist_result=`echo "$func_to_host_pathlist_tmp1" |\
+ $SED -e "$lt_replace_pathsep_nix_to_dos"`
+ fi
+ # Now, add the leading and trailing path separators back
+ case "$1" in
+ :* ) func_to_host_pathlist_result=";$func_to_host_pathlist_result"
+ ;;
+ esac
+ case "$1" in
+ *: ) func_to_host_pathlist_result="$func_to_host_pathlist_result;"
+ ;;
+ esac
+ ;;
+ esac
+ fi
+}
+# end: func_to_host_pathlist
+
+# func_emit_cwrapperexe_src
+# emit the source code for a wrapper executable on stdout
+# Must ONLY be called from within func_mode_link because
+# it depends on a number of variable set therein.
+func_emit_cwrapperexe_src ()
+{
+ cat <<EOF
+
+/* $cwrappersource - temporary wrapper executable for $objdir/$outputname
+ Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION
+
+ The $output program cannot be directly executed until all the libtool
+ libraries that it depends on are installed.
+
+ This wrapper executable should never be moved out of the build directory.
+ If it is, it will not operate correctly.
+
+ Currently, it simply execs the wrapper *script* "$SHELL $output",
+ but could eventually absorb all of the scripts functionality and
+ exec $objdir/$outputname directly.
+*/
+EOF
+ cat <<"EOF"
+#include <stdio.h>
+#include <stdlib.h>
+#ifdef _MSC_VER
+# include <direct.h>
+# include <process.h>
+# include <io.h>
+# define setmode _setmode
+#else
+# include <unistd.h>
+# include <stdint.h>
+# ifdef __CYGWIN__
+# include <io.h>
+# define HAVE_SETENV
+# ifdef __STRICT_ANSI__
+char *realpath (const char *, char *);
+int putenv (char *);
+int setenv (const char *, const char *, int);
+# endif
+# endif
+#endif
+#include <malloc.h>
+#include <stdarg.h>
+#include <assert.h>
+#include <string.h>
+#include <ctype.h>
+#include <errno.h>
+#include <fcntl.h>
+#include <sys/stat.h>
+
+#if defined(PATH_MAX)
+# define LT_PATHMAX PATH_MAX
+#elif defined(MAXPATHLEN)
+# define LT_PATHMAX MAXPATHLEN
+#else
+# define LT_PATHMAX 1024
+#endif
+
+#ifndef S_IXOTH
+# define S_IXOTH 0
+#endif
+#ifndef S_IXGRP
+# define S_IXGRP 0
+#endif
+
+#ifdef _MSC_VER
+# define S_IXUSR _S_IEXEC
+# define stat _stat
+# ifndef _INTPTR_T_DEFINED
+# define intptr_t int
+# endif
+#endif
+
+#ifndef DIR_SEPARATOR
+# define DIR_SEPARATOR '/'
+# define PATH_SEPARATOR ':'
+#endif
+
+#if defined (_WIN32) || defined (__MSDOS__) || defined (__DJGPP__) || \
+ defined (__OS2__)
+# define HAVE_DOS_BASED_FILE_SYSTEM
+# define FOPEN_WB "wb"
+# ifndef DIR_SEPARATOR_2
+# define DIR_SEPARATOR_2 '\\'
+# endif
+# ifndef PATH_SEPARATOR_2
+# define PATH_SEPARATOR_2 ';'
+# endif
+#endif
+
+#ifndef DIR_SEPARATOR_2
+# define IS_DIR_SEPARATOR(ch) ((ch) == DIR_SEPARATOR)
+#else /* DIR_SEPARATOR_2 */
+# define IS_DIR_SEPARATOR(ch) \
+ (((ch) == DIR_SEPARATOR) || ((ch) == DIR_SEPARATOR_2))
+#endif /* DIR_SEPARATOR_2 */
+
+#ifndef PATH_SEPARATOR_2
+# define IS_PATH_SEPARATOR(ch) ((ch) == PATH_SEPARATOR)
+#else /* PATH_SEPARATOR_2 */
+# define IS_PATH_SEPARATOR(ch) ((ch) == PATH_SEPARATOR_2)
+#endif /* PATH_SEPARATOR_2 */
+
+#ifdef __CYGWIN__
+# define FOPEN_WB "wb"
+#endif
+
+#ifndef FOPEN_WB
+# define FOPEN_WB "w"
+#endif
+#ifndef _O_BINARY
+# define _O_BINARY 0
+#endif
+
+#define XMALLOC(type, num) ((type *) xmalloc ((num) * sizeof(type)))
+#define XFREE(stale) do { \
+ if (stale) { free ((void *) stale); stale = 0; } \
+} while (0)
+
+#undef LTWRAPPER_DEBUGPRINTF
+#if defined DEBUGWRAPPER
+# define LTWRAPPER_DEBUGPRINTF(args) ltwrapper_debugprintf args
+static void
+ltwrapper_debugprintf (const char *fmt, ...)
+{
+ va_list args;
+ va_start (args, fmt);
+ (void) vfprintf (stderr, fmt, args);
+ va_end (args);
+}
+#else
+# define LTWRAPPER_DEBUGPRINTF(args)
+#endif
+
+const char *program_name = NULL;
+
+void *xmalloc (size_t num);
+char *xstrdup (const char *string);
+const char *base_name (const char *name);
+char *find_executable (const char *wrapper);
+char *chase_symlinks (const char *pathspec);
+int make_executable (const char *path);
+int check_executable (const char *path);
+char *strendzap (char *str, const char *pat);
+void lt_fatal (const char *message, ...);
+void lt_setenv (const char *name, const char *value);
+char *lt_extend_str (const char *orig_value, const char *add, int to_end);
+void lt_opt_process_env_set (const char *arg);
+void lt_opt_process_env_prepend (const char *arg);
+void lt_opt_process_env_append (const char *arg);
+int lt_split_name_value (const char *arg, char** name, char** value);
+void lt_update_exe_path (const char *name, const char *value);
+void lt_update_lib_path (const char *name, const char *value);
+
+static const char *script_text_part1 =
+EOF
+
+ func_emit_wrapper_part1 yes |
+ $SED -e 's/\([\\"]\)/\\\1/g' \
+ -e 's/^/ "/' -e 's/$/\\n"/'
+ echo ";"
+ cat <<EOF
+
+static const char *script_text_part2 =
+EOF
+ func_emit_wrapper_part2 yes |
+ $SED -e 's/\([\\"]\)/\\\1/g' \
+ -e 's/^/ "/' -e 's/$/\\n"/'
+ echo ";"
+
+ cat <<EOF
+const char * MAGIC_EXE = "$magic_exe";
+const char * LIB_PATH_VARNAME = "$shlibpath_var";
+EOF
+
+ if test "$shlibpath_overrides_runpath" = yes && test -n "$shlibpath_var" && test -n "$temp_rpath"; then
+ func_to_host_pathlist "$temp_rpath"
+ cat <<EOF
+const char * LIB_PATH_VALUE = "$func_to_host_pathlist_result";
+EOF
+ else
+ cat <<"EOF"
+const char * LIB_PATH_VALUE = "";
+EOF
+ fi
+
+ if test -n "$dllsearchpath"; then
+ func_to_host_pathlist "$dllsearchpath:"
+ cat <<EOF
+const char * EXE_PATH_VARNAME = "PATH";
+const char * EXE_PATH_VALUE = "$func_to_host_pathlist_result";
+EOF
+ else
+ cat <<"EOF"
+const char * EXE_PATH_VARNAME = "";
+const char * EXE_PATH_VALUE = "";
+EOF
+ fi
+
+ if test "$fast_install" = yes; then
+ cat <<EOF
+const char * TARGET_PROGRAM_NAME = "lt-$outputname"; /* hopefully, no .exe */
+EOF
+ else
+ cat <<EOF
+const char * TARGET_PROGRAM_NAME = "$outputname"; /* hopefully, no .exe */
+EOF
+ fi
+
+
+ cat <<"EOF"
+
+#define LTWRAPPER_OPTION_PREFIX "--lt-"
+#define LTWRAPPER_OPTION_PREFIX_LENGTH 5
+
+static const size_t opt_prefix_len = LTWRAPPER_OPTION_PREFIX_LENGTH;
+static const char *ltwrapper_option_prefix = LTWRAPPER_OPTION_PREFIX;
+
+static const char *dumpscript_opt = LTWRAPPER_OPTION_PREFIX "dump-script";
+
+static const size_t env_set_opt_len = LTWRAPPER_OPTION_PREFIX_LENGTH + 7;
+static const char *env_set_opt = LTWRAPPER_OPTION_PREFIX "env-set";
+ /* argument is putenv-style "foo=bar", value of foo is set to bar */
+
+static const size_t env_prepend_opt_len = LTWRAPPER_OPTION_PREFIX_LENGTH + 11;
+static const char *env_prepend_opt = LTWRAPPER_OPTION_PREFIX "env-prepend";
+ /* argument is putenv-style "foo=bar", new value of foo is bar${foo} */
+
+static const size_t env_append_opt_len = LTWRAPPER_OPTION_PREFIX_LENGTH + 10;
+static const char *env_append_opt = LTWRAPPER_OPTION_PREFIX "env-append";
+ /* argument is putenv-style "foo=bar", new value of foo is ${foo}bar */
+
+int
+main (int argc, char *argv[])
+{
+ char **newargz;
+ int newargc;
+ char *tmp_pathspec;
+ char *actual_cwrapper_path;
+ char *actual_cwrapper_name;
+ char *target_name;
+ char *lt_argv_zero;
+ intptr_t rval = 127;
+
+ int i;
+
+ program_name = (char *) xstrdup (base_name (argv[0]));
+ LTWRAPPER_DEBUGPRINTF (("(main) argv[0] : %s\n", argv[0]));
+ LTWRAPPER_DEBUGPRINTF (("(main) program_name : %s\n", program_name));
+
+ /* very simple arg parsing; don't want to rely on getopt */
+ for (i = 1; i < argc; i++)
+ {
+ if (strcmp (argv[i], dumpscript_opt) == 0)
+ {
+EOF
+ case "$host" in
+ *mingw* | *cygwin* )
+ # make stdout use "unix" line endings
+ echo " setmode(1,_O_BINARY);"
+ ;;
+ esac
+
+ cat <<"EOF"
+ printf ("%s", script_text_part1);
+ printf ("%s", script_text_part2);
+ return 0;
+ }
+ }
+
+ newargz = XMALLOC (char *, argc + 1);
+ tmp_pathspec = find_executable (argv[0]);
+ if (tmp_pathspec == NULL)
+ lt_fatal ("Couldn't find %s", argv[0]);
+ LTWRAPPER_DEBUGPRINTF (("(main) found exe (before symlink chase) at : %s\n",
+ tmp_pathspec));
+
+ actual_cwrapper_path = chase_symlinks (tmp_pathspec);
+ LTWRAPPER_DEBUGPRINTF (("(main) found exe (after symlink chase) at : %s\n",
+ actual_cwrapper_path));
+ XFREE (tmp_pathspec);
+
+ actual_cwrapper_name = xstrdup( base_name (actual_cwrapper_path));
+ strendzap (actual_cwrapper_path, actual_cwrapper_name);
+
+ /* wrapper name transforms */
+ strendzap (actual_cwrapper_name, ".exe");
+ tmp_pathspec = lt_extend_str (actual_cwrapper_name, ".exe", 1);
+ XFREE (actual_cwrapper_name);
+ actual_cwrapper_name = tmp_pathspec;
+ tmp_pathspec = 0;
+
+ /* target_name transforms -- use actual target program name; might have lt- prefix */
+ target_name = xstrdup (base_name (TARGET_PROGRAM_NAME));
+ strendzap (target_name, ".exe");
+ tmp_pathspec = lt_extend_str (target_name, ".exe", 1);
+ XFREE (target_name);
+ target_name = tmp_pathspec;
+ tmp_pathspec = 0;
+
+ LTWRAPPER_DEBUGPRINTF (("(main) libtool target name: %s\n",
+ target_name));
+EOF
+
+ cat <<EOF
+ newargz[0] =
+ XMALLOC (char, (strlen (actual_cwrapper_path) +
+ strlen ("$objdir") + 1 + strlen (actual_cwrapper_name) + 1));
+ strcpy (newargz[0], actual_cwrapper_path);
+ strcat (newargz[0], "$objdir");
+ strcat (newargz[0], "/");
+EOF
+
+ cat <<"EOF"
+ /* stop here, and copy so we don't have to do this twice */
+ tmp_pathspec = xstrdup (newargz[0]);
+
+ /* do NOT want the lt- prefix here, so use actual_cwrapper_name */
+ strcat (newargz[0], actual_cwrapper_name);
+
+ /* DO want the lt- prefix here if it exists, so use target_name */
+ lt_argv_zero = lt_extend_str (tmp_pathspec, target_name, 1);
+ XFREE (tmp_pathspec);
+ tmp_pathspec = NULL;
+EOF
+
+ case $host_os in
+ mingw*)
+ cat <<"EOF"
+ {
+ char* p;
+ while ((p = strchr (newargz[0], '\\')) != NULL)
+ {
+ *p = '/';
+ }
+ while ((p = strchr (lt_argv_zero, '\\')) != NULL)
+ {
+ *p = '/';
+ }
+ }
+EOF
+ ;;
+ esac
+
+ cat <<"EOF"
+ XFREE (target_name);
+ XFREE (actual_cwrapper_path);
+ XFREE (actual_cwrapper_name);
+
+ lt_setenv ("BIN_SH", "xpg4"); /* for Tru64 */
+ lt_setenv ("DUALCASE", "1"); /* for MSK sh */
+ lt_update_lib_path (LIB_PATH_VARNAME, LIB_PATH_VALUE);
+ lt_update_exe_path (EXE_PATH_VARNAME, EXE_PATH_VALUE);
+
+ newargc=0;
+ for (i = 1; i < argc; i++)
+ {
+ if (strncmp (argv[i], env_set_opt, env_set_opt_len) == 0)
+ {
+ if (argv[i][env_set_opt_len] == '=')
+ {
+ const char *p = argv[i] + env_set_opt_len + 1;
+ lt_opt_process_env_set (p);
+ }
+ else if (argv[i][env_set_opt_len] == '\0' && i + 1 < argc)
+ {
+ lt_opt_process_env_set (argv[++i]); /* don't copy */
+ }
+ else
+ lt_fatal ("%s missing required argument", env_set_opt);
+ continue;
+ }
+ if (strncmp (argv[i], env_prepend_opt, env_prepend_opt_len) == 0)
+ {
+ if (argv[i][env_prepend_opt_len] == '=')
+ {
+ const char *p = argv[i] + env_prepend_opt_len + 1;
+ lt_opt_process_env_prepend (p);
+ }
+ else if (argv[i][env_prepend_opt_len] == '\0' && i + 1 < argc)
+ {
+ lt_opt_process_env_prepend (argv[++i]); /* don't copy */
+ }
+ else
+ lt_fatal ("%s missing required argument", env_prepend_opt);
+ continue;
+ }
+ if (strncmp (argv[i], env_append_opt, env_append_opt_len) == 0)
+ {
+ if (argv[i][env_append_opt_len] == '=')
+ {
+ const char *p = argv[i] + env_append_opt_len + 1;
+ lt_opt_process_env_append (p);
+ }
+ else if (argv[i][env_append_opt_len] == '\0' && i + 1 < argc)
+ {
+ lt_opt_process_env_append (argv[++i]); /* don't copy */
+ }
+ else
+ lt_fatal ("%s missing required argument", env_append_opt);
+ continue;
+ }
+ if (strncmp (argv[i], ltwrapper_option_prefix, opt_prefix_len) == 0)
+ {
+ /* however, if there is an option in the LTWRAPPER_OPTION_PREFIX
+ namespace, but it is not one of the ones we know about and
+ have already dealt with, above (inluding dump-script), then
+ report an error. Otherwise, targets might begin to believe
+ they are allowed to use options in the LTWRAPPER_OPTION_PREFIX
+ namespace. The first time any user complains about this, we'll
+ need to make LTWRAPPER_OPTION_PREFIX a configure-time option
+ or a configure.ac-settable value.
+ */
+ lt_fatal ("Unrecognized option in %s namespace: '%s'",
+ ltwrapper_option_prefix, argv[i]);
+ }
+ /* otherwise ... */
+ newargz[++newargc] = xstrdup (argv[i]);
+ }
+ newargz[++newargc] = NULL;
+
+ LTWRAPPER_DEBUGPRINTF (("(main) lt_argv_zero : %s\n", (lt_argv_zero ? lt_argv_zero : "<NULL>")));
+ for (i = 0; i < newargc; i++)
+ {
+ LTWRAPPER_DEBUGPRINTF (("(main) newargz[%d] : %s\n", i, (newargz[i] ? newargz[i] : "<NULL>")));
+ }
+
+EOF
+
+ case $host_os in
+ mingw*)
+ cat <<"EOF"
+ /* execv doesn't actually work on mingw as expected on unix */
+ rval = _spawnv (_P_WAIT, lt_argv_zero, (const char * const *) newargz);
+ if (rval == -1)
+ {
+ /* failed to start process */
+ LTWRAPPER_DEBUGPRINTF (("(main) failed to launch target \"%s\": errno = %d\n", lt_argv_zero, errno));
+ return 127;
+ }
+ return rval;
+EOF
+ ;;
+ *)
+ cat <<"EOF"
+ execv (lt_argv_zero, newargz);
+ return rval; /* =127, but avoids unused variable warning */
+EOF
+ ;;
+ esac
+
+ cat <<"EOF"
+}
+
+void *
+xmalloc (size_t num)
+{
+ void *p = (void *) malloc (num);
+ if (!p)
+ lt_fatal ("Memory exhausted");
+
+ return p;
+}
+
+char *
+xstrdup (const char *string)
+{
+ return string ? strcpy ((char *) xmalloc (strlen (string) + 1),
+ string) : NULL;
+}
+
+const char *
+base_name (const char *name)
+{
+ const char *base;
+
+#if defined (HAVE_DOS_BASED_FILE_SYSTEM)
+ /* Skip over the disk name in MSDOS pathnames. */
+ if (isalpha ((unsigned char) name[0]) && name[1] == ':')
+ name += 2;
+#endif
+
+ for (base = name; *name; name++)
+ if (IS_DIR_SEPARATOR (*name))
+ base = name + 1;
+ return base;
+}
+
+int
+check_executable (const char *path)
+{
+ struct stat st;
+
+ LTWRAPPER_DEBUGPRINTF (("(check_executable) : %s\n",
+ path ? (*path ? path : "EMPTY!") : "NULL!"));
+ if ((!path) || (!*path))
+ return 0;
+
+ if ((stat (path, &st) >= 0)
+ && (st.st_mode & (S_IXUSR | S_IXGRP | S_IXOTH)))
+ return 1;
+ else
+ return 0;
+}
+
+int
+make_executable (const char *path)
+{
+ int rval = 0;
+ struct stat st;
+
+ LTWRAPPER_DEBUGPRINTF (("(make_executable) : %s\n",
+ path ? (*path ? path : "EMPTY!") : "NULL!"));
+ if ((!path) || (!*path))
+ return 0;
+
+ if (stat (path, &st) >= 0)
+ {
+ rval = chmod (path, st.st_mode | S_IXOTH | S_IXGRP | S_IXUSR);
+ }
+ return rval;
+}
+
+/* Searches for the full path of the wrapper. Returns
+ newly allocated full path name if found, NULL otherwise
+ Does not chase symlinks, even on platforms that support them.
+*/
+char *
+find_executable (const char *wrapper)
+{
+ int has_slash = 0;
+ const char *p;
+ const char *p_next;
+ /* static buffer for getcwd */
+ char tmp[LT_PATHMAX + 1];
+ int tmp_len;
+ char *concat_name;
+
+ LTWRAPPER_DEBUGPRINTF (("(find_executable) : %s\n",
+ wrapper ? (*wrapper ? wrapper : "EMPTY!") : "NULL!"));
+
+ if ((wrapper == NULL) || (*wrapper == '\0'))
+ return NULL;
+
+ /* Absolute path? */
+#if defined (HAVE_DOS_BASED_FILE_SYSTEM)
+ if (isalpha ((unsigned char) wrapper[0]) && wrapper[1] == ':')
+ {
+ concat_name = xstrdup (wrapper);
+ if (check_executable (concat_name))
+ return concat_name;
+ XFREE (concat_name);
+ }
+ else
+ {
+#endif
+ if (IS_DIR_SEPARATOR (wrapper[0]))
+ {
+ concat_name = xstrdup (wrapper);
+ if (check_executable (concat_name))
+ return concat_name;
+ XFREE (concat_name);
+ }
+#if defined (HAVE_DOS_BASED_FILE_SYSTEM)
+ }
+#endif
+
+ for (p = wrapper; *p; p++)
+ if (*p == '/')
+ {
+ has_slash = 1;
+ break;
+ }
+ if (!has_slash)
+ {
+ /* no slashes; search PATH */
+ const char *path = getenv ("PATH");
+ if (path != NULL)
+ {
+ for (p = path; *p; p = p_next)
+ {
+ const char *q;
+ size_t p_len;
+ for (q = p; *q; q++)
+ if (IS_PATH_SEPARATOR (*q))
+ break;
+ p_len = q - p;
+ p_next = (*q == '\0' ? q : q + 1);
+ if (p_len == 0)
+ {
+ /* empty path: current directory */
+ if (getcwd (tmp, LT_PATHMAX) == NULL)
+ lt_fatal ("getcwd failed");
+ tmp_len = strlen (tmp);
+ concat_name =
+ XMALLOC (char, tmp_len + 1 + strlen (wrapper) + 1);
+ memcpy (concat_name, tmp, tmp_len);
+ concat_name[tmp_len] = '/';
+ strcpy (concat_name + tmp_len + 1, wrapper);
+ }
+ else
+ {
+ concat_name =
+ XMALLOC (char, p_len + 1 + strlen (wrapper) + 1);
+ memcpy (concat_name, p, p_len);
+ concat_name[p_len] = '/';
+ strcpy (concat_name + p_len + 1, wrapper);
+ }
+ if (check_executable (concat_name))
+ return concat_name;
+ XFREE (concat_name);
+ }
+ }
+ /* not found in PATH; assume curdir */
+ }
+ /* Relative path | not found in path: prepend cwd */
+ if (getcwd (tmp, LT_PATHMAX) == NULL)
+ lt_fatal ("getcwd failed");
+ tmp_len = strlen (tmp);
+ concat_name = XMALLOC (char, tmp_len + 1 + strlen (wrapper) + 1);
+ memcpy (concat_name, tmp, tmp_len);
+ concat_name[tmp_len] = '/';
+ strcpy (concat_name + tmp_len + 1, wrapper);
+
+ if (check_executable (concat_name))
+ return concat_name;
+ XFREE (concat_name);
+ return NULL;
+}
+
+char *
+chase_symlinks (const char *pathspec)
+{
+#ifndef S_ISLNK
+ return xstrdup (pathspec);
+#else
+ char buf[LT_PATHMAX];
+ struct stat s;
+ char *tmp_pathspec = xstrdup (pathspec);
+ char *p;
+ int has_symlinks = 0;
+ while (strlen (tmp_pathspec) && !has_symlinks)
+ {
+ LTWRAPPER_DEBUGPRINTF (("checking path component for symlinks: %s\n",
+ tmp_pathspec));
+ if (lstat (tmp_pathspec, &s) == 0)
+ {
+ if (S_ISLNK (s.st_mode) != 0)
+ {
+ has_symlinks = 1;
+ break;
+ }
+
+ /* search backwards for last DIR_SEPARATOR */
+ p = tmp_pathspec + strlen (tmp_pathspec) - 1;
+ while ((p > tmp_pathspec) && (!IS_DIR_SEPARATOR (*p)))
+ p--;
+ if ((p == tmp_pathspec) && (!IS_DIR_SEPARATOR (*p)))
+ {
+ /* no more DIR_SEPARATORS left */
+ break;
+ }
+ *p = '\0';
+ }
+ else
+ {
+ char *errstr = strerror (errno);
+ lt_fatal ("Error accessing file %s (%s)", tmp_pathspec, errstr);
+ }
+ }
+ XFREE (tmp_pathspec);
+
+ if (!has_symlinks)
+ {
+ return xstrdup (pathspec);
+ }
+
+ tmp_pathspec = realpath (pathspec, buf);
+ if (tmp_pathspec == 0)
+ {
+ lt_fatal ("Could not follow symlinks for %s", pathspec);
+ }
+ return xstrdup (tmp_pathspec);
+#endif
+}
+
+char *
+strendzap (char *str, const char *pat)
+{
+ size_t len, patlen;
+
+ assert (str != NULL);
+ assert (pat != NULL);
+
+ len = strlen (str);
+ patlen = strlen (pat);
+
+ if (patlen <= len)
+ {
+ str += len - patlen;
+ if (strcmp (str, pat) == 0)
+ *str = '\0';
+ }
+ return str;
+}
+
+static void
+lt_error_core (int exit_status, const char *mode,
+ const char *message, va_list ap)
+{
+ fprintf (stderr, "%s: %s: ", program_name, mode);
+ vfprintf (stderr, message, ap);
+ fprintf (stderr, ".\n");
+
+ if (exit_status >= 0)
+ exit (exit_status);
+}
+
+void
+lt_fatal (const char *message, ...)
+{
+ va_list ap;
+ va_start (ap, message);
+ lt_error_core (EXIT_FAILURE, "FATAL", message, ap);
+ va_end (ap);
+}
+
+void
+lt_setenv (const char *name, const char *value)
+{
+ LTWRAPPER_DEBUGPRINTF (("(lt_setenv) setting '%s' to '%s'\n",
+ (name ? name : "<NULL>"),
+ (value ? value : "<NULL>")));
+ {
+#ifdef HAVE_SETENV
+ /* always make a copy, for consistency with !HAVE_SETENV */
+ char *str = xstrdup (value);
+ setenv (name, str, 1);
+#else
+ int len = strlen (name) + 1 + strlen (value) + 1;
+ char *str = XMALLOC (char, len);
+ sprintf (str, "%s=%s", name, value);
+ if (putenv (str) != EXIT_SUCCESS)
+ {
+ XFREE (str);
+ }
+#endif
+ }
+}
+
+char *
+lt_extend_str (const char *orig_value, const char *add, int to_end)
+{
+ char *new_value;
+ if (orig_value && *orig_value)
+ {
+ int orig_value_len = strlen (orig_value);
+ int add_len = strlen (add);
+ new_value = XMALLOC (char, add_len + orig_value_len + 1);
+ if (to_end)
+ {
+ strcpy (new_value, orig_value);
+ strcpy (new_value + orig_value_len, add);
+ }
+ else
+ {
+ strcpy (new_value, add);
+ strcpy (new_value + add_len, orig_value);
+ }
+ }
+ else
+ {
+ new_value = xstrdup (add);
+ }
+ return new_value;
+}
+
+int
+lt_split_name_value (const char *arg, char** name, char** value)
+{
+ const char *p;
+ int len;
+ if (!arg || !*arg)
+ return 1;
+
+ p = strchr (arg, (int)'=');
+
+ if (!p)
+ return 1;
+
+ *value = xstrdup (++p);
+
+ len = strlen (arg) - strlen (*value);
+ *name = XMALLOC (char, len);
+ strncpy (*name, arg, len-1);
+ (*name)[len - 1] = '\0';
+
+ return 0;
+}
+
+void
+lt_opt_process_env_set (const char *arg)
+{
+ char *name = NULL;
+ char *value = NULL;
+
+ if (lt_split_name_value (arg, &name, &value) != 0)
+ {
+ XFREE (name);
+ XFREE (value);
+ lt_fatal ("bad argument for %s: '%s'", env_set_opt, arg);
+ }
+
+ lt_setenv (name, value);
+ XFREE (name);
+ XFREE (value);
+}
+
+void
+lt_opt_process_env_prepend (const char *arg)
+{
+ char *name = NULL;
+ char *value = NULL;
+ char *new_value = NULL;
+
+ if (lt_split_name_value (arg, &name, &value) != 0)
+ {
+ XFREE (name);
+ XFREE (value);
+ lt_fatal ("bad argument for %s: '%s'", env_prepend_opt, arg);
+ }
+
+ new_value = lt_extend_str (getenv (name), value, 0);
+ lt_setenv (name, new_value);
+ XFREE (new_value);
+ XFREE (name);
+ XFREE (value);
+}
+
+void
+lt_opt_process_env_append (const char *arg)
+{
+ char *name = NULL;
+ char *value = NULL;
+ char *new_value = NULL;
+
+ if (lt_split_name_value (arg, &name, &value) != 0)
+ {
+ XFREE (name);
+ XFREE (value);
+ lt_fatal ("bad argument for %s: '%s'", env_append_opt, arg);
+ }
+
+ new_value = lt_extend_str (getenv (name), value, 1);
+ lt_setenv (name, new_value);
+ XFREE (new_value);
+ XFREE (name);
+ XFREE (value);
+}
+
+void
+lt_update_exe_path (const char *name, const char *value)
+{
+ LTWRAPPER_DEBUGPRINTF (("(lt_update_exe_path) modifying '%s' by prepending '%s'\n",
+ (name ? name : "<NULL>"),
+ (value ? value : "<NULL>")));
+
+ if (name && *name && value && *value)
+ {
+ char *new_value = lt_extend_str (getenv (name), value, 0);
+ /* some systems can't cope with a ':'-terminated path #' */
+ int len = strlen (new_value);
+ while (((len = strlen (new_value)) > 0) && IS_PATH_SEPARATOR (new_value[len-1]))
+ {
+ new_value[len-1] = '\0';
+ }
+ lt_setenv (name, new_value);
+ XFREE (new_value);
+ }
+}
+
+void
+lt_update_lib_path (const char *name, const char *value)
+{
+ LTWRAPPER_DEBUGPRINTF (("(lt_update_lib_path) modifying '%s' by prepending '%s'\n",
+ (name ? name : "<NULL>"),
+ (value ? value : "<NULL>")));
+
+ if (name && *name && value && *value)
+ {
+ char *new_value = lt_extend_str (getenv (name), value, 0);
+ lt_setenv (name, new_value);
+ XFREE (new_value);
+ }
+}
+
+
+EOF
+}
+# end: func_emit_cwrapperexe_src
+
+# func_mode_link arg...
+func_mode_link ()
+{
+ $opt_debug
+ case $host in
+ *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*)
+ # It is impossible to link a dll without this setting, and
+ # we shouldn't force the makefile maintainer to figure out
+ # which system we are compiling for in order to pass an extra
+ # flag for every libtool invocation.
+ # allow_undefined=no
+
+ # FIXME: Unfortunately, there are problems with the above when trying
+ # to make a dll which has undefined symbols, in which case not
+ # even a static library is built. For now, we need to specify
+ # -no-undefined on the libtool link line when we can be certain
+ # that all symbols are satisfied, otherwise we get a static library.
+ allow_undefined=yes
+ ;;
+ *)
+ allow_undefined=yes
+ ;;
+ esac
+ libtool_args=$nonopt
+ base_compile="$nonopt $@"
+ compile_command=$nonopt
+ finalize_command=$nonopt
+
+ compile_rpath=
+ finalize_rpath=
+ compile_shlibpath=
+ finalize_shlibpath=
+ convenience=
+ old_convenience=
+ deplibs=
+ old_deplibs=
+ compiler_flags=
+ linker_flags=
+ dllsearchpath=
+ lib_search_path=`pwd`
+ inst_prefix_dir=
+ new_inherited_linker_flags=
+
+ avoid_version=no
+ dlfiles=
+ dlprefiles=
+ dlself=no
+ export_dynamic=no
+ export_symbols=
+ export_symbols_regex=
+ generated=
+ libobjs=
+ ltlibs=
+ module=no
+ no_install=no
+ objs=
+ non_pic_objects=
+ precious_files_regex=
+ prefer_static_libs=no
+ preload=no
+ prev=
+ prevarg=
+ release=
+ rpath=
+ xrpath=
+ perm_rpath=
+ temp_rpath=
+ thread_safe=no
+ vinfo=
+ vinfo_number=no
+ weak_libs=
+ single_module="${wl}-single_module"
+ func_infer_tag $base_compile
+
+ # We need to know -static, to get the right output filenames.
+ for arg
+ do
+ case $arg in
+ -shared)
+ test "$build_libtool_libs" != yes && \
+ func_fatal_configuration "can not build a shared library"
+ build_old_libs=no
+ break
+ ;;
+ -all-static | -static | -static-libtool-libs)
+ case $arg in
+ -all-static)
+ if test "$build_libtool_libs" = yes && test -z "$link_static_flag"; then
+ func_warning "complete static linking is impossible in this configuration"
+ fi
+ if test -n "$link_static_flag"; then
+ dlopen_self=$dlopen_self_static
+ fi
+ prefer_static_libs=yes
+ ;;
+ -static)
+ if test -z "$pic_flag" && test -n "$link_static_flag"; then
+ dlopen_self=$dlopen_self_static
+ fi
+ prefer_static_libs=built
+ ;;
+ -static-libtool-libs)
+ if test -z "$pic_flag" && test -n "$link_static_flag"; then
+ dlopen_self=$dlopen_self_static
+ fi
+ prefer_static_libs=yes
+ ;;
+ esac
+ build_libtool_libs=no
+ build_old_libs=yes
+ break
+ ;;
+ esac
+ done
+
+ # See if our shared archives depend on static archives.
+ test -n "$old_archive_from_new_cmds" && build_old_libs=yes
+
+ # Go through the arguments, transforming them on the way.
+ while test "$#" -gt 0; do
+ arg="$1"
+ shift
+ func_quote_for_eval "$arg"
+ qarg=$func_quote_for_eval_unquoted_result
+ func_append libtool_args " $func_quote_for_eval_result"
+
+ # If the previous option needs an argument, assign it.
+ if test -n "$prev"; then
+ case $prev in
+ output)
+ func_append compile_command " @OUTPUT@"
+ func_append finalize_command " @OUTPUT@"
+ ;;
+ esac
+
+ case $prev in
+ dlfiles|dlprefiles)
+ if test "$preload" = no; then
+ # Add the symbol object into the linking commands.
+ func_append compile_command " @SYMFILE@"
+ func_append finalize_command " @SYMFILE@"
+ preload=yes
+ fi
+ case $arg in
+ *.la | *.lo) ;; # We handle these cases below.
+ force)
+ if test "$dlself" = no; then
+ dlself=needless
+ export_dynamic=yes
+ fi
+ prev=
+ continue
+ ;;
+ self)
+ if test "$prev" = dlprefiles; then
+ dlself=yes
+ elif test "$prev" = dlfiles && test "$dlopen_self" != yes; then
+ dlself=yes
+ else
+ dlself=needless
+ export_dynamic=yes
+ fi
+ prev=
+ continue
+ ;;
+ *)
+ if test "$prev" = dlfiles; then
+ dlfiles="$dlfiles $arg"
+ else
+ dlprefiles="$dlprefiles $arg"
+ fi
+ prev=
+ continue
+ ;;
+ esac
+ ;;
+ expsyms)
+ export_symbols="$arg"
+ test -f "$arg" \
+ || func_fatal_error "symbol file \`$arg' does not exist"
+ prev=
+ continue
+ ;;
+ expsyms_regex)
+ export_symbols_regex="$arg"
+ prev=
+ continue
+ ;;
+ framework)
+ case $host in
+ *-*-darwin*)
+ case "$deplibs " in
+ *" $qarg.ltframework "*) ;;
+ *) deplibs="$deplibs $qarg.ltframework" # this is fixed later
+ ;;
+ esac
+ ;;
+ esac
+ prev=
+ continue
+ ;;
+ inst_prefix)
+ inst_prefix_dir="$arg"
+ prev=
+ continue
+ ;;
+ objectlist)
+ if test -f "$arg"; then
+ save_arg=$arg
+ moreargs=
+ for fil in `cat "$save_arg"`
+ do
+# moreargs="$moreargs $fil"
+ arg=$fil
+ # A libtool-controlled object.
+
+ # Check to see that this really is a libtool object.
+ if func_lalib_unsafe_p "$arg"; then
+ pic_object=
+ non_pic_object=
+
+ # Read the .lo file
+ func_source "$arg"
+
+ if test -z "$pic_object" ||
+ test -z "$non_pic_object" ||
+ test "$pic_object" = none &&
+ test "$non_pic_object" = none; then
+ func_fatal_error "cannot find name of object for \`$arg'"
+ fi
+
+ # Extract subdirectory from the argument.
+ func_dirname "$arg" "/" ""
+ xdir="$func_dirname_result"
+
+ if test "$pic_object" != none; then
+ # Prepend the subdirectory the object is found in.
+ pic_object="$xdir$pic_object"
+
+ if test "$prev" = dlfiles; then
+ if test "$build_libtool_libs" = yes && test "$dlopen_support" = yes; then
+ dlfiles="$dlfiles $pic_object"
+ prev=
+ continue
+ else
+ # If libtool objects are unsupported, then we need to preload.
+ prev=dlprefiles
+ fi
+ fi
+
+ # CHECK ME: I think I busted this. -Ossama
+ if test "$prev" = dlprefiles; then
+ # Preload the old-style object.
+ dlprefiles="$dlprefiles $pic_object"
+ prev=
+ fi
+
+ # A PIC object.
+ func_append libobjs " $pic_object"
+ arg="$pic_object"
+ fi
+
+ # Non-PIC object.
+ if test "$non_pic_object" != none; then
+ # Prepend the subdirectory the object is found in.
+ non_pic_object="$xdir$non_pic_object"
+
+ # A standard non-PIC object
+ func_append non_pic_objects " $non_pic_object"
+ if test -z "$pic_object" || test "$pic_object" = none ; then
+ arg="$non_pic_object"
+ fi
+ else
+ # If the PIC object exists, use it instead.
+ # $xdir was prepended to $pic_object above.
+ non_pic_object="$pic_object"
+ func_append non_pic_objects " $non_pic_object"
+ fi
+ else
+ # Only an error if not doing a dry-run.
+ if $opt_dry_run; then
+ # Extract subdirectory from the argument.
+ func_dirname "$arg" "/" ""
+ xdir="$func_dirname_result"
+
+ func_lo2o "$arg"
+ pic_object=$xdir$objdir/$func_lo2o_result
+ non_pic_object=$xdir$func_lo2o_result
+ func_append libobjs " $pic_object"
+ func_append non_pic_objects " $non_pic_object"
+ else
+ func_fatal_error "\`$arg' is not a valid libtool object"
+ fi
+ fi
+ done
+ else
+ func_fatal_error "link input file \`$arg' does not exist"
+ fi
+ arg=$save_arg
+ prev=
+ continue
+ ;;
+ precious_regex)
+ precious_files_regex="$arg"
+ prev=
+ continue
+ ;;
+ release)
+ release="-$arg"
+ prev=
+ continue
+ ;;
+ rpath | xrpath)
+ # We need an absolute path.
+ case $arg in
+ [\\/]* | [A-Za-z]:[\\/]*) ;;
+ *)
+ func_fatal_error "only absolute run-paths are allowed"
+ ;;
+ esac
+ if test "$prev" = rpath; then
+ case "$rpath " in
+ *" $arg "*) ;;
+ *) rpath="$rpath $arg" ;;
+ esac
+ else
+ case "$xrpath " in
+ *" $arg "*) ;;
+ *) xrpath="$xrpath $arg" ;;
+ esac
+ fi
+ prev=
+ continue
+ ;;
+ shrext)
+ shrext_cmds="$arg"
+ prev=
+ continue
+ ;;
+ weak)
+ weak_libs="$weak_libs $arg"
+ prev=
+ continue
+ ;;
+ xcclinker)
+ linker_flags="$linker_flags $qarg"
+ compiler_flags="$compiler_flags $qarg"
+ prev=
+ func_append compile_command " $qarg"
+ func_append finalize_command " $qarg"
+ continue
+ ;;
+ xcompiler)
+ compiler_flags="$compiler_flags $qarg"
+ prev=
+ func_append compile_command " $qarg"
+ func_append finalize_command " $qarg"
+ continue
+ ;;
+ xlinker)
+ linker_flags="$linker_flags $qarg"
+ compiler_flags="$compiler_flags $wl$qarg"
+ prev=
+ func_append compile_command " $wl$qarg"
+ func_append finalize_command " $wl$qarg"
+ continue
+ ;;
+ *)
+ eval "$prev=\"\$arg\""
+ prev=
+ continue
+ ;;
+ esac
+ fi # test -n "$prev"
+
+ prevarg="$arg"
+
+ case $arg in
+ -all-static)
+ if test -n "$link_static_flag"; then
+ # See comment for -static flag below, for more details.
+ func_append compile_command " $link_static_flag"
+ func_append finalize_command " $link_static_flag"
+ fi
+ continue
+ ;;
+
+ -allow-undefined)
+ # FIXME: remove this flag sometime in the future.
+ func_fatal_error "\`-allow-undefined' must not be used because it is the default"
+ ;;
+
+ -avoid-version)
+ avoid_version=yes
+ continue
+ ;;
+
+ -dlopen)
+ prev=dlfiles
+ continue
+ ;;
+
+ -dlpreopen)
+ prev=dlprefiles
+ continue
+ ;;
+
+ -export-dynamic)
+ export_dynamic=yes
+ continue
+ ;;
+
+ -export-symbols | -export-symbols-regex)
+ if test -n "$export_symbols" || test -n "$export_symbols_regex"; then
+ func_fatal_error "more than one -exported-symbols argument is not allowed"
+ fi
+ if test "X$arg" = "X-export-symbols"; then
+ prev=expsyms
+ else
+ prev=expsyms_regex
+ fi
+ continue
+ ;;
+
+ -framework)
+ prev=framework
+ continue
+ ;;
+
+ -inst-prefix-dir)
+ prev=inst_prefix
+ continue
+ ;;
+
+ # The native IRIX linker understands -LANG:*, -LIST:* and -LNO:*
+ # so, if we see these flags be careful not to treat them like -L
+ -L[A-Z][A-Z]*:*)
+ case $with_gcc/$host in
+ no/*-*-irix* | /*-*-irix*)
+ func_append compile_command " $arg"
+ func_append finalize_command " $arg"
+ ;;
+ esac
+ continue
+ ;;
+
+ -L*)
+ func_stripname '-L' '' "$arg"
+ dir=$func_stripname_result
+ if test -z "$dir"; then
+ if test "$#" -gt 0; then
+ func_fatal_error "require no space between \`-L' and \`$1'"
+ else
+ func_fatal_error "need path for \`-L' option"
+ fi
+ fi
+ # We need an absolute path.
+ case $dir in
+ [\\/]* | [A-Za-z]:[\\/]*) ;;
+ *)
+ absdir=`cd "$dir" && pwd`
+ test -z "$absdir" && \
+ func_fatal_error "cannot determine absolute directory name of \`$dir'"
+ dir="$absdir"
+ ;;
+ esac
+ case "$deplibs " in
+ *" -L$dir "*) ;;
+ *)
+ deplibs="$deplibs -L$dir"
+ lib_search_path="$lib_search_path $dir"
+ ;;
+ esac
+ case $host in
+ *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*)
+ testbindir=`$ECHO "X$dir" | $Xsed -e 's*/lib$*/bin*'`
+ case :$dllsearchpath: in
+ *":$dir:"*) ;;
+ ::) dllsearchpath=$dir;;
+ *) dllsearchpath="$dllsearchpath:$dir";;
+ esac
+ case :$dllsearchpath: in
+ *":$testbindir:"*) ;;
+ ::) dllsearchpath=$testbindir;;
+ *) dllsearchpath="$dllsearchpath:$testbindir";;
+ esac
+ ;;
+ esac
+ continue
+ ;;
+
+ -l*)
+ if test "X$arg" = "X-lc" || test "X$arg" = "X-lm"; then
+ case $host in
+ *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-beos* | *-cegcc*)
+ # These systems don't actually have a C or math library (as such)
+ continue
+ ;;
+ *-*-os2*)
+ # These systems don't actually have a C library (as such)
+ test "X$arg" = "X-lc" && continue
+ ;;
+ *-*-openbsd* | *-*-freebsd* | *-*-dragonfly*)
+ # Do not include libc due to us having libc/libc_r.
+ test "X$arg" = "X-lc" && continue
+ ;;
+ *-*-rhapsody* | *-*-darwin1.[012])
+ # Rhapsody C and math libraries are in the System framework
+ deplibs="$deplibs System.ltframework"
+ continue
+ ;;
+ *-*-sco3.2v5* | *-*-sco5v6*)
+ # Causes problems with __ctype
+ test "X$arg" = "X-lc" && continue
+ ;;
+ *-*-sysv4.2uw2* | *-*-sysv5* | *-*-unixware* | *-*-OpenUNIX*)
+ # Compiler inserts libc in the correct place for threads to work
+ test "X$arg" = "X-lc" && continue
+ ;;
+ esac
+ elif test "X$arg" = "X-lc_r"; then
+ case $host in
+ *-*-openbsd* | *-*-freebsd* | *-*-dragonfly*)
+ # Do not include libc_r directly, use -pthread flag.
+ continue
+ ;;
+ esac
+ fi
+ deplibs="$deplibs $arg"
+ continue
+ ;;
+
+ -module)
+ module=yes
+ continue
+ ;;
+
+ # Tru64 UNIX uses -model [arg] to determine the layout of C++
+ # classes, name mangling, and exception handling.
+ # Darwin uses the -arch flag to determine output architecture.
+ -model|-arch|-isysroot)
+ compiler_flags="$compiler_flags $arg"
+ func_append compile_command " $arg"
+ func_append finalize_command " $arg"
+ prev=xcompiler
+ continue
+ ;;
+
+ -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe|-threads)
+ compiler_flags="$compiler_flags $arg"
+ func_append compile_command " $arg"
+ func_append finalize_command " $arg"
+ case "$new_inherited_linker_flags " in
+ *" $arg "*) ;;
+ * ) new_inherited_linker_flags="$new_inherited_linker_flags $arg" ;;
+ esac
+ continue
+ ;;
+
+ -multi_module)
+ single_module="${wl}-multi_module"
+ continue
+ ;;
+
+ -no-fast-install)
+ fast_install=no
+ continue
+ ;;
+
+ -no-install)
+ case $host in
+ *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-*-darwin* | *-cegcc*)
+ # The PATH hackery in wrapper scripts is required on Windows
+ # and Darwin in order for the loader to find any dlls it needs.
+ func_warning "\`-no-install' is ignored for $host"
+ func_warning "assuming \`-no-fast-install' instead"
+ fast_install=no
+ ;;
+ *) no_install=yes ;;
+ esac
+ continue
+ ;;
+
+ -no-undefined)
+ allow_undefined=no
+ continue
+ ;;
+
+ -objectlist)
+ prev=objectlist
+ continue
+ ;;
+
+ -o) prev=output ;;
+
+ -precious-files-regex)
+ prev=precious_regex
+ continue
+ ;;
+
+ -release)
+ prev=release
+ continue
+ ;;
+
+ -rpath)
+ prev=rpath
+ continue
+ ;;
+
+ -R)
+ prev=xrpath
+ continue
+ ;;
+
+ -R*)
+ func_stripname '-R' '' "$arg"
+ dir=$func_stripname_result
+ # We need an absolute path.
+ case $dir in
+ [\\/]* | [A-Za-z]:[\\/]*) ;;
+ *)
+ func_fatal_error "only absolute run-paths are allowed"
+ ;;
+ esac
+ case "$xrpath " in
+ *" $dir "*) ;;
+ *) xrpath="$xrpath $dir" ;;
+ esac
+ continue
+ ;;
+
+ -shared)
+ # The effects of -shared are defined in a previous loop.
+ continue
+ ;;
+
+ -shrext)
+ prev=shrext
+ continue
+ ;;
+
+ -static | -static-libtool-libs)
+ # The effects of -static are defined in a previous loop.
+ # We used to do the same as -all-static on platforms that
+ # didn't have a PIC flag, but the assumption that the effects
+ # would be equivalent was wrong. It would break on at least
+ # Digital Unix and AIX.
+ continue
+ ;;
+
+ -thread-safe)
+ thread_safe=yes
+ continue
+ ;;
+
+ -version-info)
+ prev=vinfo
+ continue
+ ;;
+
+ -version-number)
+ prev=vinfo
+ vinfo_number=yes
+ continue
+ ;;
+
+ -weak)
+ prev=weak
+ continue
+ ;;
+
+ -Wc,*)
+ func_stripname '-Wc,' '' "$arg"
+ args=$func_stripname_result
+ arg=
+ save_ifs="$IFS"; IFS=','
+ for flag in $args; do
+ IFS="$save_ifs"
+ func_quote_for_eval "$flag"
+ arg="$arg $wl$func_quote_for_eval_result"
+ compiler_flags="$compiler_flags $func_quote_for_eval_result"
+ done
+ IFS="$save_ifs"
+ func_stripname ' ' '' "$arg"
+ arg=$func_stripname_result
+ ;;
+
+ -Wl,*)
+ func_stripname '-Wl,' '' "$arg"
+ args=$func_stripname_result
+ arg=
+ save_ifs="$IFS"; IFS=','
+ for flag in $args; do
+ IFS="$save_ifs"
+ func_quote_for_eval "$flag"
+ arg="$arg $wl$func_quote_for_eval_result"
+ compiler_flags="$compiler_flags $wl$func_quote_for_eval_result"
+ linker_flags="$linker_flags $func_quote_for_eval_result"
+ done
+ IFS="$save_ifs"
+ func_stripname ' ' '' "$arg"
+ arg=$func_stripname_result
+ ;;
+
+ -Xcompiler)
+ prev=xcompiler
+ continue
+ ;;
+
+ -Xlinker)
+ prev=xlinker
+ continue
+ ;;
+
+ -XCClinker)
+ prev=xcclinker
+ continue
+ ;;
+
+ # -msg_* for osf cc
+ -msg_*)
+ func_quote_for_eval "$arg"
+ arg="$func_quote_for_eval_result"
+ ;;
+
+ # -64, -mips[0-9] enable 64-bit mode on the SGI compiler
+ # -r[0-9][0-9]* specifies the processor on the SGI compiler
+ # -xarch=*, -xtarget=* enable 64-bit mode on the Sun compiler
+ # +DA*, +DD* enable 64-bit mode on the HP compiler
+ # -q* pass through compiler args for the IBM compiler
+ # -m*, -t[45]*, -txscale* pass through architecture-specific
+ # compiler args for GCC
+ # -F/path gives path to uninstalled frameworks, gcc on darwin
+ # -p, -pg, --coverage, -fprofile-* pass through profiling flag for GCC
+ # @file GCC response files
+ -64|-mips[0-9]|-r[0-9][0-9]*|-xarch=*|-xtarget=*|+DA*|+DD*|-q*|-m*| \
+ -t[45]*|-txscale*|-p|-pg|--coverage|-fprofile-*|-F*|@*)
+ func_quote_for_eval "$arg"
+ arg="$func_quote_for_eval_result"
+ func_append compile_command " $arg"
+ func_append finalize_command " $arg"
+ compiler_flags="$compiler_flags $arg"
+ continue
+ ;;
+
+ # Some other compiler flag.
+ -* | +*)
+ func_quote_for_eval "$arg"
+ arg="$func_quote_for_eval_result"
+ ;;
+
+ *.$objext)
+ # A standard object.
+ objs="$objs $arg"
+ ;;
+
+ *.lo)
+ # A libtool-controlled object.
+
+ # Check to see that this really is a libtool object.
+ if func_lalib_unsafe_p "$arg"; then
+ pic_object=
+ non_pic_object=
+
+ # Read the .lo file
+ func_source "$arg"
+
+ if test -z "$pic_object" ||
+ test -z "$non_pic_object" ||
+ test "$pic_object" = none &&
+ test "$non_pic_object" = none; then
+ func_fatal_error "cannot find name of object for \`$arg'"
+ fi
+
+ # Extract subdirectory from the argument.
+ func_dirname "$arg" "/" ""
+ xdir="$func_dirname_result"
+
+ if test "$pic_object" != none; then
+ # Prepend the subdirectory the object is found in.
+ pic_object="$xdir$pic_object"
+
+ if test "$prev" = dlfiles; then
+ if test "$build_libtool_libs" = yes && test "$dlopen_support" = yes; then
+ dlfiles="$dlfiles $pic_object"
+ prev=
+ continue
+ else
+ # If libtool objects are unsupported, then we need to preload.
+ prev=dlprefiles
+ fi
+ fi
+
+ # CHECK ME: I think I busted this. -Ossama
+ if test "$prev" = dlprefiles; then
+ # Preload the old-style object.
+ dlprefiles="$dlprefiles $pic_object"
+ prev=
+ fi
+
+ # A PIC object.
+ func_append libobjs " $pic_object"
+ arg="$pic_object"
+ fi
+
+ # Non-PIC object.
+ if test "$non_pic_object" != none; then
+ # Prepend the subdirectory the object is found in.
+ non_pic_object="$xdir$non_pic_object"
+
+ # A standard non-PIC object
+ func_append non_pic_objects " $non_pic_object"
+ if test -z "$pic_object" || test "$pic_object" = none ; then
+ arg="$non_pic_object"
+ fi
+ else
+ # If the PIC object exists, use it instead.
+ # $xdir was prepended to $pic_object above.
+ non_pic_object="$pic_object"
+ func_append non_pic_objects " $non_pic_object"
+ fi
+ else
+ # Only an error if not doing a dry-run.
+ if $opt_dry_run; then
+ # Extract subdirectory from the argument.
+ func_dirname "$arg" "/" ""
+ xdir="$func_dirname_result"
+
+ func_lo2o "$arg"
+ pic_object=$xdir$objdir/$func_lo2o_result
+ non_pic_object=$xdir$func_lo2o_result
+ func_append libobjs " $pic_object"
+ func_append non_pic_objects " $non_pic_object"
+ else
+ func_fatal_error "\`$arg' is not a valid libtool object"
+ fi
+ fi
+ ;;
+
+ *.$libext)
+ # An archive.
+ deplibs="$deplibs $arg"
+ old_deplibs="$old_deplibs $arg"
+ continue
+ ;;
+
+ *.la)
+ # A libtool-controlled library.
+
+ if test "$prev" = dlfiles; then
+ # This library was specified with -dlopen.
+ dlfiles="$dlfiles $arg"
+ prev=
+ elif test "$prev" = dlprefiles; then
+ # The library was specified with -dlpreopen.
+ dlprefiles="$dlprefiles $arg"
+ prev=
+ else
+ deplibs="$deplibs $arg"
+ fi
+ continue
+ ;;
+
+ # Some other compiler argument.
+ *)
+ # Unknown arguments in both finalize_command and compile_command need
+ # to be aesthetically quoted because they are evaled later.
+ func_quote_for_eval "$arg"
+ arg="$func_quote_for_eval_result"
+ ;;
+ esac # arg
+
+ # Now actually substitute the argument into the commands.
+ if test -n "$arg"; then
+ func_append compile_command " $arg"
+ func_append finalize_command " $arg"
+ fi
+ done # argument parsing loop
+
+ test -n "$prev" && \
+ func_fatal_help "the \`$prevarg' option requires an argument"
+
+ if test "$export_dynamic" = yes && test -n "$export_dynamic_flag_spec"; then
+ eval arg=\"$export_dynamic_flag_spec\"
+ func_append compile_command " $arg"
+ func_append finalize_command " $arg"
+ fi
+
+ oldlibs=
+ # calculate the name of the file, without its directory
+ func_basename "$output"
+ outputname="$func_basename_result"
+ libobjs_save="$libobjs"
+
+ if test -n "$shlibpath_var"; then
+ # get the directories listed in $shlibpath_var
+ eval shlib_search_path=\`\$ECHO \"X\${$shlibpath_var}\" \| \$Xsed -e \'s/:/ /g\'\`
+ else
+ shlib_search_path=
+ fi
+ eval sys_lib_search_path=\"$sys_lib_search_path_spec\"
+ eval sys_lib_dlsearch_path=\"$sys_lib_dlsearch_path_spec\"
+
+ func_dirname "$output" "/" ""
+ output_objdir="$func_dirname_result$objdir"
+ # Create the object directory.
+ func_mkdir_p "$output_objdir"
+
+ # Determine the type of output
+ case $output in
+ "")
+ func_fatal_help "you must specify an output file"
+ ;;
+ *.$libext) linkmode=oldlib ;;
+ *.lo | *.$objext) linkmode=obj ;;
+ *.la) linkmode=lib ;;
+ *) linkmode=prog ;; # Anything else should be a program.
+ esac
+
+ specialdeplibs=
+
+ libs=
+ # Find all interdependent deplibs by searching for libraries
+ # that are linked more than once (e.g. -la -lb -la)
+ for deplib in $deplibs; do
+ if $opt_duplicate_deps ; then
+ case "$libs " in
+ *" $deplib "*) specialdeplibs="$specialdeplibs $deplib" ;;
+ esac
+ fi
+ libs="$libs $deplib"
+ done
+
+ if test "$linkmode" = lib; then
+ libs="$predeps $libs $compiler_lib_search_path $postdeps"
+
+ # Compute libraries that are listed more than once in $predeps
+ # $postdeps and mark them as special (i.e., whose duplicates are
+ # not to be eliminated).
+ pre_post_deps=
+ if $opt_duplicate_compiler_generated_deps; then
+ for pre_post_dep in $predeps $postdeps; do
+ case "$pre_post_deps " in
+ *" $pre_post_dep "*) specialdeplibs="$specialdeplibs $pre_post_deps" ;;
+ esac
+ pre_post_deps="$pre_post_deps $pre_post_dep"
+ done
+ fi
+ pre_post_deps=
+ fi
+
+ deplibs=
+ newdependency_libs=
+ newlib_search_path=
+ need_relink=no # whether we're linking any uninstalled libtool libraries
+ notinst_deplibs= # not-installed libtool libraries
+ notinst_path= # paths that contain not-installed libtool libraries
+
+ case $linkmode in
+ lib)
+ passes="conv dlpreopen link"
+ for file in $dlfiles $dlprefiles; do
+ case $file in
+ *.la) ;;
+ *)
+ func_fatal_help "libraries can \`-dlopen' only libtool libraries: $file"
+ ;;
+ esac
+ done
+ ;;
+ prog)
+ compile_deplibs=
+ finalize_deplibs=
+ alldeplibs=no
+ newdlfiles=
+ newdlprefiles=
+ passes="conv scan dlopen dlpreopen link"
+ ;;
+ *) passes="conv"
+ ;;
+ esac
+
+ for pass in $passes; do
+ # The preopen pass in lib mode reverses $deplibs; put it back here
+ # so that -L comes before libs that need it for instance...
+ if test "$linkmode,$pass" = "lib,link"; then
+ ## FIXME: Find the place where the list is rebuilt in the wrong
+ ## order, and fix it there properly
+ tmp_deplibs=
+ for deplib in $deplibs; do
+ tmp_deplibs="$deplib $tmp_deplibs"
+ done
+ deplibs="$tmp_deplibs"
+ fi
+
+ if test "$linkmode,$pass" = "lib,link" ||
+ test "$linkmode,$pass" = "prog,scan"; then
+ libs="$deplibs"
+ deplibs=
+ fi
+ if test "$linkmode" = prog; then
+ case $pass in
+ dlopen) libs="$dlfiles" ;;
+ dlpreopen) libs="$dlprefiles" ;;
+ link) libs="$deplibs %DEPLIBS% $dependency_libs" ;;
+ esac
+ fi
+ if test "$linkmode,$pass" = "lib,dlpreopen"; then
+ # Collect and forward deplibs of preopened libtool libs
+ for lib in $dlprefiles; do
+ # Ignore non-libtool-libs
+ dependency_libs=
+ case $lib in
+ *.la) func_source "$lib" ;;
+ esac
+
+ # Collect preopened libtool deplibs, except any this library
+ # has declared as weak libs
+ for deplib in $dependency_libs; do
+ deplib_base=`$ECHO "X$deplib" | $Xsed -e "$basename"`
+ case " $weak_libs " in
+ *" $deplib_base "*) ;;
+ *) deplibs="$deplibs $deplib" ;;
+ esac
+ done
+ done
+ libs="$dlprefiles"
+ fi
+ if test "$pass" = dlopen; then
+ # Collect dlpreopened libraries
+ save_deplibs="$deplibs"
+ deplibs=
+ fi
+
+ for deplib in $libs; do
+ lib=
+ found=no
+ case $deplib in
+ -mt|-mthreads|-kthread|-Kthread|-pthread|-pthreads|--thread-safe|-threads)
+ if test "$linkmode,$pass" = "prog,link"; then
+ compile_deplibs="$deplib $compile_deplibs"
+ finalize_deplibs="$deplib $finalize_deplibs"
+ else
+ compiler_flags="$compiler_flags $deplib"
+ if test "$linkmode" = lib ; then
+ case "$new_inherited_linker_flags " in
+ *" $deplib "*) ;;
+ * ) new_inherited_linker_flags="$new_inherited_linker_flags $deplib" ;;
+ esac
+ fi
+ fi
+ continue
+ ;;
+ -l*)
+ if test "$linkmode" != lib && test "$linkmode" != prog; then
+ func_warning "\`-l' is ignored for archives/objects"
+ continue
+ fi
+ func_stripname '-l' '' "$deplib"
+ name=$func_stripname_result
+ if test "$linkmode" = lib; then
+ searchdirs="$newlib_search_path $lib_search_path $compiler_lib_search_dirs $sys_lib_search_path $shlib_search_path"
+ else
+ searchdirs="$newlib_search_path $lib_search_path $sys_lib_search_path $shlib_search_path"
+ fi
+ for searchdir in $searchdirs; do
+ for search_ext in .la $std_shrext .so .a; do
+ # Search the libtool library
+ lib="$searchdir/lib${name}${search_ext}"
+ if test -f "$lib"; then
+ if test "$search_ext" = ".la"; then
+ found=yes
+ else
+ found=no
+ fi
+ break 2
+ fi
+ done
+ done
+ if test "$found" != yes; then
+ # deplib doesn't seem to be a libtool library
+ if test "$linkmode,$pass" = "prog,link"; then
+ compile_deplibs="$deplib $compile_deplibs"
+ finalize_deplibs="$deplib $finalize_deplibs"
+ else
+ deplibs="$deplib $deplibs"
+ test "$linkmode" = lib && newdependency_libs="$deplib $newdependency_libs"
+ fi
+ continue
+ else # deplib is a libtool library
+ # If $allow_libtool_libs_with_static_runtimes && $deplib is a stdlib,
+ # We need to do some special things here, and not later.
+ if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then
+ case " $predeps $postdeps " in
+ *" $deplib "*)
+ if func_lalib_p "$lib"; then
+ library_names=
+ old_library=
+ func_source "$lib"
+ for l in $old_library $library_names; do
+ ll="$l"
+ done
+ if test "X$ll" = "X$old_library" ; then # only static version available
+ found=no
+ func_dirname "$lib" "" "."
+ ladir="$func_dirname_result"
+ lib=$ladir/$old_library
+ if test "$linkmode,$pass" = "prog,link"; then
+ compile_deplibs="$deplib $compile_deplibs"
+ finalize_deplibs="$deplib $finalize_deplibs"
+ else
+ deplibs="$deplib $deplibs"
+ test "$linkmode" = lib && newdependency_libs="$deplib $newdependency_libs"
+ fi
+ continue
+ fi
+ fi
+ ;;
+ *) ;;
+ esac
+ fi
+ fi
+ ;; # -l
+ *.ltframework)
+ if test "$linkmode,$pass" = "prog,link"; then
+ compile_deplibs="$deplib $compile_deplibs"
+ finalize_deplibs="$deplib $finalize_deplibs"
+ else
+ deplibs="$deplib $deplibs"
+ if test "$linkmode" = lib ; then
+ case "$new_inherited_linker_flags " in
+ *" $deplib "*) ;;
+ * ) new_inherited_linker_flags="$new_inherited_linker_flags $deplib" ;;
+ esac
+ fi
+ fi
+ continue
+ ;;
+ -L*)
+ case $linkmode in
+ lib)
+ deplibs="$deplib $deplibs"
+ test "$pass" = conv && continue
+ newdependency_libs="$deplib $newdependency_libs"
+ func_stripname '-L' '' "$deplib"
+ newlib_search_path="$newlib_search_path $func_stripname_result"
+ ;;
+ prog)
+ if test "$pass" = conv; then
+ deplibs="$deplib $deplibs"
+ continue
+ fi
+ if test "$pass" = scan; then
+ deplibs="$deplib $deplibs"
+ else
+ compile_deplibs="$deplib $compile_deplibs"
+ finalize_deplibs="$deplib $finalize_deplibs"
+ fi
+ func_stripname '-L' '' "$deplib"
+ newlib_search_path="$newlib_search_path $func_stripname_result"
+ ;;
+ *)
+ func_warning "\`-L' is ignored for archives/objects"
+ ;;
+ esac # linkmode
+ continue
+ ;; # -L
+ -R*)
+ if test "$pass" = link; then
+ func_stripname '-R' '' "$deplib"
+ dir=$func_stripname_result
+ # Make sure the xrpath contains only unique directories.
+ case "$xrpath " in
+ *" $dir "*) ;;
+ *) xrpath="$xrpath $dir" ;;
+ esac
+ fi
+ deplibs="$deplib $deplibs"
+ continue
+ ;;
+ *.la) lib="$deplib" ;;
+ *.$libext)
+ if test "$pass" = conv; then
+ deplibs="$deplib $deplibs"
+ continue
+ fi
+ case $linkmode in
+ lib)
+ # Linking convenience modules into shared libraries is allowed,
+ # but linking other static libraries is non-portable.
+ case " $dlpreconveniencelibs " in
+ *" $deplib "*) ;;
+ *)
+ valid_a_lib=no
+ case $deplibs_check_method in
+ match_pattern*)
+ set dummy $deplibs_check_method; shift
+ match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
+ if eval "\$ECHO \"X$deplib\"" 2>/dev/null | $Xsed -e 10q \
+ | $EGREP "$match_pattern_regex" > /dev/null; then
+ valid_a_lib=yes
+ fi
+ ;;
+ pass_all)
+ valid_a_lib=yes
+ ;;
+ esac
+ if test "$valid_a_lib" != yes; then
+ $ECHO
+ $ECHO "*** Warning: Trying to link with static lib archive $deplib."
+ $ECHO "*** I have the capability to make that library automatically link in when"
+ $ECHO "*** you link to this library. But I can only do this if you have a"
+ $ECHO "*** shared version of the library, which you do not appear to have"
+ $ECHO "*** because the file extensions .$libext of this argument makes me believe"
+ $ECHO "*** that it is just a static archive that I should not use here."
+ else
+ $ECHO
+ $ECHO "*** Warning: Linking the shared library $output against the"
+ $ECHO "*** static library $deplib is not portable!"
+ deplibs="$deplib $deplibs"
+ fi
+ ;;
+ esac
+ continue
+ ;;
+ prog)
+ if test "$pass" != link; then
+ deplibs="$deplib $deplibs"
+ else
+ compile_deplibs="$deplib $compile_deplibs"
+ finalize_deplibs="$deplib $finalize_deplibs"
+ fi
+ continue
+ ;;
+ esac # linkmode
+ ;; # *.$libext
+ *.lo | *.$objext)
+ if test "$pass" = conv; then
+ deplibs="$deplib $deplibs"
+ elif test "$linkmode" = prog; then
+ if test "$pass" = dlpreopen || test "$dlopen_support" != yes || test "$build_libtool_libs" = no; then
+ # If there is no dlopen support or we're linking statically,
+ # we need to preload.
+ newdlprefiles="$newdlprefiles $deplib"
+ compile_deplibs="$deplib $compile_deplibs"
+ finalize_deplibs="$deplib $finalize_deplibs"
+ else
+ newdlfiles="$newdlfiles $deplib"
+ fi
+ fi
+ continue
+ ;;
+ %DEPLIBS%)
+ alldeplibs=yes
+ continue
+ ;;
+ esac # case $deplib
+
+ if test "$found" = yes || test -f "$lib"; then :
+ else
+ func_fatal_error "cannot find the library \`$lib' or unhandled argument \`$deplib'"
+ fi
+
+ # Check to see that this really is a libtool archive.
+ func_lalib_unsafe_p "$lib" \
+ || func_fatal_error "\`$lib' is not a valid libtool archive"
+
+ func_dirname "$lib" "" "."
+ ladir="$func_dirname_result"
+
+ dlname=
+ dlopen=
+ dlpreopen=
+ libdir=
+ library_names=
+ old_library=
+ inherited_linker_flags=
+ # If the library was installed with an old release of libtool,
+ # it will not redefine variables installed, or shouldnotlink
+ installed=yes
+ shouldnotlink=no
+ avoidtemprpath=
+
+
+ # Read the .la file
+ func_source "$lib"
+
+ # Convert "-framework foo" to "foo.ltframework"
+ if test -n "$inherited_linker_flags"; then
+ tmp_inherited_linker_flags=`$ECHO "X$inherited_linker_flags" | $Xsed -e 's/-framework \([^ $]*\)/\1.ltframework/g'`
+ for tmp_inherited_linker_flag in $tmp_inherited_linker_flags; do
+ case " $new_inherited_linker_flags " in
+ *" $tmp_inherited_linker_flag "*) ;;
+ *) new_inherited_linker_flags="$new_inherited_linker_flags $tmp_inherited_linker_flag";;
+ esac
+ done
+ fi
+ dependency_libs=`$ECHO "X $dependency_libs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
+ if test "$linkmode,$pass" = "lib,link" ||
+ test "$linkmode,$pass" = "prog,scan" ||
+ { test "$linkmode" != prog && test "$linkmode" != lib; }; then
+ test -n "$dlopen" && dlfiles="$dlfiles $dlopen"
+ test -n "$dlpreopen" && dlprefiles="$dlprefiles $dlpreopen"
+ fi
+
+ if test "$pass" = conv; then
+ # Only check for convenience libraries
+ deplibs="$lib $deplibs"
+ if test -z "$libdir"; then
+ if test -z "$old_library"; then
+ func_fatal_error "cannot find name of link library for \`$lib'"
+ fi
+ # It is a libtool convenience library, so add in its objects.
+ convenience="$convenience $ladir/$objdir/$old_library"
+ old_convenience="$old_convenience $ladir/$objdir/$old_library"
+ elif test "$linkmode" != prog && test "$linkmode" != lib; then
+ func_fatal_error "\`$lib' is not a convenience library"
+ fi
+ tmp_libs=
+ for deplib in $dependency_libs; do
+ deplibs="$deplib $deplibs"
+ if $opt_duplicate_deps ; then
+ case "$tmp_libs " in
+ *" $deplib "*) specialdeplibs="$specialdeplibs $deplib" ;;
+ esac
+ fi
+ tmp_libs="$tmp_libs $deplib"
+ done
+ continue
+ fi # $pass = conv
+
+
+ # Get the name of the library we link against.
+ linklib=
+ for l in $old_library $library_names; do
+ linklib="$l"
+ done
+ if test -z "$linklib"; then
+ func_fatal_error "cannot find name of link library for \`$lib'"
+ fi
+
+ # This library was specified with -dlopen.
+ if test "$pass" = dlopen; then
+ if test -z "$libdir"; then
+ func_fatal_error "cannot -dlopen a convenience library: \`$lib'"
+ fi
+ if test -z "$dlname" ||
+ test "$dlopen_support" != yes ||
+ test "$build_libtool_libs" = no; then
+ # If there is no dlname, no dlopen support or we're linking
+ # statically, we need to preload. We also need to preload any
+ # dependent libraries so libltdl's deplib preloader doesn't
+ # bomb out in the load deplibs phase.
+ dlprefiles="$dlprefiles $lib $dependency_libs"
+ else
+ newdlfiles="$newdlfiles $lib"
+ fi
+ continue
+ fi # $pass = dlopen
+
+ # We need an absolute path.
+ case $ladir in
+ [\\/]* | [A-Za-z]:[\\/]*) abs_ladir="$ladir" ;;
+ *)
+ abs_ladir=`cd "$ladir" && pwd`
+ if test -z "$abs_ladir"; then
+ func_warning "cannot determine absolute directory name of \`$ladir'"
+ func_warning "passing it literally to the linker, although it might fail"
+ abs_ladir="$ladir"
+ fi
+ ;;
+ esac
+ func_basename "$lib"
+ laname="$func_basename_result"
+
+ # Find the relevant object directory and library name.
+ if test "X$installed" = Xyes; then
+ if test ! -f "$libdir/$linklib" && test -f "$abs_ladir/$linklib"; then
+ func_warning "library \`$lib' was moved."
+ dir="$ladir"
+ absdir="$abs_ladir"
+ libdir="$abs_ladir"
+ else
+ dir="$libdir"
+ absdir="$libdir"
+ fi
+ test "X$hardcode_automatic" = Xyes && avoidtemprpath=yes
+ else
+ if test ! -f "$ladir/$objdir/$linklib" && test -f "$abs_ladir/$linklib"; then
+ dir="$ladir"
+ absdir="$abs_ladir"
+ # Remove this search path later
+ notinst_path="$notinst_path $abs_ladir"
+ else
+ dir="$ladir/$objdir"
+ absdir="$abs_ladir/$objdir"
+ # Remove this search path later
+ notinst_path="$notinst_path $abs_ladir"
+ fi
+ fi # $installed = yes
+ func_stripname 'lib' '.la' "$laname"
+ name=$func_stripname_result
+
+ # This library was specified with -dlpreopen.
+ if test "$pass" = dlpreopen; then
+ if test -z "$libdir" && test "$linkmode" = prog; then
+ func_fatal_error "only libraries may -dlpreopen a convenience library: \`$lib'"
+ fi
+ # Prefer using a static library (so that no silly _DYNAMIC symbols
+ # are required to link).
+ if test -n "$old_library"; then
+ newdlprefiles="$newdlprefiles $dir/$old_library"
+ # Keep a list of preopened convenience libraries to check
+ # that they are being used correctly in the link pass.
+ test -z "$libdir" && \
+ dlpreconveniencelibs="$dlpreconveniencelibs $dir/$old_library"
+ # Otherwise, use the dlname, so that lt_dlopen finds it.
+ elif test -n "$dlname"; then
+ newdlprefiles="$newdlprefiles $dir/$dlname"
+ else
+ newdlprefiles="$newdlprefiles $dir/$linklib"
+ fi
+ fi # $pass = dlpreopen
+
+ if test -z "$libdir"; then
+ # Link the convenience library
+ if test "$linkmode" = lib; then
+ deplibs="$dir/$old_library $deplibs"
+ elif test "$linkmode,$pass" = "prog,link"; then
+ compile_deplibs="$dir/$old_library $compile_deplibs"
+ finalize_deplibs="$dir/$old_library $finalize_deplibs"
+ else
+ deplibs="$lib $deplibs" # used for prog,scan pass
+ fi
+ continue
+ fi
+
+
+ if test "$linkmode" = prog && test "$pass" != link; then
+ newlib_search_path="$newlib_search_path $ladir"
+ deplibs="$lib $deplibs"
+
+ linkalldeplibs=no
+ if test "$link_all_deplibs" != no || test -z "$library_names" ||
+ test "$build_libtool_libs" = no; then
+ linkalldeplibs=yes
+ fi
+
+ tmp_libs=
+ for deplib in $dependency_libs; do
+ case $deplib in
+ -L*) func_stripname '-L' '' "$deplib"
+ newlib_search_path="$newlib_search_path $func_stripname_result"
+ ;;
+ esac
+ # Need to link against all dependency_libs?
+ if test "$linkalldeplibs" = yes; then
+ deplibs="$deplib $deplibs"
+ else
+ # Need to hardcode shared library paths
+ # or/and link against static libraries
+ newdependency_libs="$deplib $newdependency_libs"
+ fi
+ if $opt_duplicate_deps ; then
+ case "$tmp_libs " in
+ *" $deplib "*) specialdeplibs="$specialdeplibs $deplib" ;;
+ esac
+ fi
+ tmp_libs="$tmp_libs $deplib"
+ done # for deplib
+ continue
+ fi # $linkmode = prog...
+
+ if test "$linkmode,$pass" = "prog,link"; then
+ if test -n "$library_names" &&
+ { { test "$prefer_static_libs" = no ||
+ test "$prefer_static_libs,$installed" = "built,yes"; } ||
+ test -z "$old_library"; }; then
+ # We need to hardcode the library path
+ if test -n "$shlibpath_var" && test -z "$avoidtemprpath" ; then
+ # Make sure the rpath contains only unique directories.
+ case "$temp_rpath:" in
+ *"$absdir:"*) ;;
+ *) temp_rpath="$temp_rpath$absdir:" ;;
+ esac
+ fi
+
+ # Hardcode the library path.
+ # Skip directories that are in the system default run-time
+ # search path.
+ case " $sys_lib_dlsearch_path " in
+ *" $absdir "*) ;;
+ *)
+ case "$compile_rpath " in
+ *" $absdir "*) ;;
+ *) compile_rpath="$compile_rpath $absdir"
+ esac
+ ;;
+ esac
+ case " $sys_lib_dlsearch_path " in
+ *" $libdir "*) ;;
+ *)
+ case "$finalize_rpath " in
+ *" $libdir "*) ;;
+ *) finalize_rpath="$finalize_rpath $libdir"
+ esac
+ ;;
+ esac
+ fi # $linkmode,$pass = prog,link...
+
+ if test "$alldeplibs" = yes &&
+ { test "$deplibs_check_method" = pass_all ||
+ { test "$build_libtool_libs" = yes &&
+ test -n "$library_names"; }; }; then
+ # We only need to search for static libraries
+ continue
+ fi
+ fi
+
+ link_static=no # Whether the deplib will be linked statically
+ use_static_libs=$prefer_static_libs
+ if test "$use_static_libs" = built && test "$installed" = yes; then
+ use_static_libs=no
+ fi
+ if test -n "$library_names" &&
+ { test "$use_static_libs" = no || test -z "$old_library"; }; then
+ case $host in
+ *cygwin* | *mingw* | *cegcc*)
+ # No point in relinking DLLs because paths are not encoded
+ notinst_deplibs="$notinst_deplibs $lib"
+ need_relink=no
+ ;;
+ *)
+ if test "$installed" = no; then
+ notinst_deplibs="$notinst_deplibs $lib"
+ need_relink=yes
+ fi
+ ;;
+ esac
+ # This is a shared library
+
+ # Warn about portability, can't link against -module's on some
+ # systems (darwin). Don't bleat about dlopened modules though!
+ dlopenmodule=""
+ for dlpremoduletest in $dlprefiles; do
+ if test "X$dlpremoduletest" = "X$lib"; then
+ dlopenmodule="$dlpremoduletest"
+ break
+ fi
+ done
+ if test -z "$dlopenmodule" && test "$shouldnotlink" = yes && test "$pass" = link; then
+ $ECHO
+ if test "$linkmode" = prog; then
+ $ECHO "*** Warning: Linking the executable $output against the loadable module"
+ else
+ $ECHO "*** Warning: Linking the shared library $output against the loadable module"
+ fi
+ $ECHO "*** $linklib is not portable!"
+ fi
+ if test "$linkmode" = lib &&
+ test "$hardcode_into_libs" = yes; then
+ # Hardcode the library path.
+ # Skip directories that are in the system default run-time
+ # search path.
+ case " $sys_lib_dlsearch_path " in
+ *" $absdir "*) ;;
+ *)
+ case "$compile_rpath " in
+ *" $absdir "*) ;;
+ *) compile_rpath="$compile_rpath $absdir"
+ esac
+ ;;
+ esac
+ case " $sys_lib_dlsearch_path " in
+ *" $libdir "*) ;;
+ *)
+ case "$finalize_rpath " in
+ *" $libdir "*) ;;
+ *) finalize_rpath="$finalize_rpath $libdir"
+ esac
+ ;;
+ esac
+ fi
+
+ if test -n "$old_archive_from_expsyms_cmds"; then
+ # figure out the soname
+ set dummy $library_names
+ shift
+ realname="$1"
+ shift
+ libname=`eval "\\$ECHO \"$libname_spec\""`
+ # use dlname if we got it. it's perfectly good, no?
+ if test -n "$dlname"; then
+ soname="$dlname"
+ elif test -n "$soname_spec"; then
+ # bleh windows
+ case $host in
+ *cygwin* | mingw* | *cegcc*)
+ func_arith $current - $age
+ major=$func_arith_result
+ versuffix="-$major"
+ ;;
+ esac
+ eval soname=\"$soname_spec\"
+ else
+ soname="$realname"
+ fi
+
+ # Make a new name for the extract_expsyms_cmds to use
+ soroot="$soname"
+ func_basename "$soroot"
+ soname="$func_basename_result"
+ func_stripname 'lib' '.dll' "$soname"
+ newlib=libimp-$func_stripname_result.a
+
+ # If the library has no export list, then create one now
+ if test -f "$output_objdir/$soname-def"; then :
+ else
+ func_verbose "extracting exported symbol list from \`$soname'"
+ func_execute_cmds "$extract_expsyms_cmds" 'exit $?'
+ fi
+
+ # Create $newlib
+ if test -f "$output_objdir/$newlib"; then :; else
+ func_verbose "generating import library for \`$soname'"
+ func_execute_cmds "$old_archive_from_expsyms_cmds" 'exit $?'
+ fi
+ # make sure the library variables are pointing to the new library
+ dir=$output_objdir
+ linklib=$newlib
+ fi # test -n "$old_archive_from_expsyms_cmds"
+
+ if test "$linkmode" = prog || test "$mode" != relink; then
+ add_shlibpath=
+ add_dir=
+ add=
+ lib_linked=yes
+ case $hardcode_action in
+ immediate | unsupported)
+ if test "$hardcode_direct" = no; then
+ add="$dir/$linklib"
+ case $host in
+ *-*-sco3.2v5.0.[024]*) add_dir="-L$dir" ;;
+ *-*-sysv4*uw2*) add_dir="-L$dir" ;;
+ *-*-sysv5OpenUNIX* | *-*-sysv5UnixWare7.[01].[10]* | \
+ *-*-unixware7*) add_dir="-L$dir" ;;
+ *-*-darwin* )
+ # if the lib is a (non-dlopened) module then we can not
+ # link against it, someone is ignoring the earlier warnings
+ if /usr/bin/file -L $add 2> /dev/null |
+ $GREP ": [^:]* bundle" >/dev/null ; then
+ if test "X$dlopenmodule" != "X$lib"; then
+ $ECHO "*** Warning: lib $linklib is a module, not a shared library"
+ if test -z "$old_library" ; then
+ $ECHO
+ $ECHO "*** And there doesn't seem to be a static archive available"
+ $ECHO "*** The link will probably fail, sorry"
+ else
+ add="$dir/$old_library"
+ fi
+ elif test -n "$old_library"; then
+ add="$dir/$old_library"
+ fi
+ fi
+ esac
+ elif test "$hardcode_minus_L" = no; then
+ case $host in
+ *-*-sunos*) add_shlibpath="$dir" ;;
+ esac
+ add_dir="-L$dir"
+ add="-l$name"
+ elif test "$hardcode_shlibpath_var" = no; then
+ add_shlibpath="$dir"
+ add="-l$name"
+ else
+ lib_linked=no
+ fi
+ ;;
+ relink)
+ if test "$hardcode_direct" = yes &&
+ test "$hardcode_direct_absolute" = no; then
+ add="$dir/$linklib"
+ elif test "$hardcode_minus_L" = yes; then
+ add_dir="-L$dir"
+ # Try looking first in the location we're being installed to.
+ if test -n "$inst_prefix_dir"; then
+ case $libdir in
+ [\\/]*)
+ add_dir="$add_dir -L$inst_prefix_dir$libdir"
+ ;;
+ esac
+ fi
+ add="-l$name"
+ elif test "$hardcode_shlibpath_var" = yes; then
+ add_shlibpath="$dir"
+ add="-l$name"
+ else
+ lib_linked=no
+ fi
+ ;;
+ *) lib_linked=no ;;
+ esac
+
+ if test "$lib_linked" != yes; then
+ func_fatal_configuration "unsupported hardcode properties"
+ fi
+
+ if test -n "$add_shlibpath"; then
+ case :$compile_shlibpath: in
+ *":$add_shlibpath:"*) ;;
+ *) compile_shlibpath="$compile_shlibpath$add_shlibpath:" ;;
+ esac
+ fi
+ if test "$linkmode" = prog; then
+ test -n "$add_dir" && compile_deplibs="$add_dir $compile_deplibs"
+ test -n "$add" && compile_deplibs="$add $compile_deplibs"
+ else
+ test -n "$add_dir" && deplibs="$add_dir $deplibs"
+ test -n "$add" && deplibs="$add $deplibs"
+ if test "$hardcode_direct" != yes &&
+ test "$hardcode_minus_L" != yes &&
+ test "$hardcode_shlibpath_var" = yes; then
+ case :$finalize_shlibpath: in
+ *":$libdir:"*) ;;
+ *) finalize_shlibpath="$finalize_shlibpath$libdir:" ;;
+ esac
+ fi
+ fi
+ fi
+
+ if test "$linkmode" = prog || test "$mode" = relink; then
+ add_shlibpath=
+ add_dir=
+ add=
+ # Finalize command for both is simple: just hardcode it.
+ if test "$hardcode_direct" = yes &&
+ test "$hardcode_direct_absolute" = no; then
+ add="$libdir/$linklib"
+ elif test "$hardcode_minus_L" = yes; then
+ add_dir="-L$libdir"
+ add="-l$name"
+ elif test "$hardcode_shlibpath_var" = yes; then
+ case :$finalize_shlibpath: in
+ *":$libdir:"*) ;;
+ *) finalize_shlibpath="$finalize_shlibpath$libdir:" ;;
+ esac
+ add="-l$name"
+ elif test "$hardcode_automatic" = yes; then
+ if test -n "$inst_prefix_dir" &&
+ test -f "$inst_prefix_dir$libdir/$linklib" ; then
+ add="$inst_prefix_dir$libdir/$linklib"
+ else
+ add="$libdir/$linklib"
+ fi
+ else
+ # We cannot seem to hardcode it, guess we'll fake it.
+ add_dir="-L$libdir"
+ # Try looking first in the location we're being installed to.
+ if test -n "$inst_prefix_dir"; then
+ case $libdir in
+ [\\/]*)
+ add_dir="$add_dir -L$inst_prefix_dir$libdir"
+ ;;
+ esac
+ fi
+ add="-l$name"
+ fi
+
+ if test "$linkmode" = prog; then
+ test -n "$add_dir" && finalize_deplibs="$add_dir $finalize_deplibs"
+ test -n "$add" && finalize_deplibs="$add $finalize_deplibs"
+ else
+ test -n "$add_dir" && deplibs="$add_dir $deplibs"
+ test -n "$add" && deplibs="$add $deplibs"
+ fi
+ fi
+ elif test "$linkmode" = prog; then
+ # Here we assume that one of hardcode_direct or hardcode_minus_L
+ # is not unsupported. This is valid on all known static and
+ # shared platforms.
+ if test "$hardcode_direct" != unsupported; then
+ test -n "$old_library" && linklib="$old_library"
+ compile_deplibs="$dir/$linklib $compile_deplibs"
+ finalize_deplibs="$dir/$linklib $finalize_deplibs"
+ else
+ compile_deplibs="-l$name -L$dir $compile_deplibs"
+ finalize_deplibs="-l$name -L$dir $finalize_deplibs"
+ fi
+ elif test "$build_libtool_libs" = yes; then
+ # Not a shared library
+ if test "$deplibs_check_method" != pass_all; then
+ # We're trying link a shared library against a static one
+ # but the system doesn't support it.
+
+ # Just print a warning and add the library to dependency_libs so
+ # that the program can be linked against the static library.
+ $ECHO
+ $ECHO "*** Warning: This system can not link to static lib archive $lib."
+ $ECHO "*** I have the capability to make that library automatically link in when"
+ $ECHO "*** you link to this library. But I can only do this if you have a"
+ $ECHO "*** shared version of the library, which you do not appear to have."
+ if test "$module" = yes; then
+ $ECHO "*** But as you try to build a module library, libtool will still create "
+ $ECHO "*** a static module, that should work as long as the dlopening application"
+ $ECHO "*** is linked with the -dlopen flag to resolve symbols at runtime."
+ if test -z "$global_symbol_pipe"; then
+ $ECHO
+ $ECHO "*** However, this would only work if libtool was able to extract symbol"
+ $ECHO "*** lists from a program, using \`nm' or equivalent, but libtool could"
+ $ECHO "*** not find such a program. So, this module is probably useless."
+ $ECHO "*** \`nm' from GNU binutils and a full rebuild may help."
+ fi
+ if test "$build_old_libs" = no; then
+ build_libtool_libs=module
+ build_old_libs=yes
+ else
+ build_libtool_libs=no
+ fi
+ fi
+ else
+ deplibs="$dir/$old_library $deplibs"
+ link_static=yes
+ fi
+ fi # link shared/static library?
+
+ if test "$linkmode" = lib; then
+ if test -n "$dependency_libs" &&
+ { test "$hardcode_into_libs" != yes ||
+ test "$build_old_libs" = yes ||
+ test "$link_static" = yes; }; then
+ # Extract -R from dependency_libs
+ temp_deplibs=
+ for libdir in $dependency_libs; do
+ case $libdir in
+ -R*) func_stripname '-R' '' "$libdir"
+ temp_xrpath=$func_stripname_result
+ case " $xrpath " in
+ *" $temp_xrpath "*) ;;
+ *) xrpath="$xrpath $temp_xrpath";;
+ esac;;
+ *) temp_deplibs="$temp_deplibs $libdir";;
+ esac
+ done
+ dependency_libs="$temp_deplibs"
+ fi
+
+ newlib_search_path="$newlib_search_path $absdir"
+ # Link against this library
+ test "$link_static" = no && newdependency_libs="$abs_ladir/$laname $newdependency_libs"
+ # ... and its dependency_libs
+ tmp_libs=
+ for deplib in $dependency_libs; do
+ newdependency_libs="$deplib $newdependency_libs"
+ if $opt_duplicate_deps ; then
+ case "$tmp_libs " in
+ *" $deplib "*) specialdeplibs="$specialdeplibs $deplib" ;;
+ esac
+ fi
+ tmp_libs="$tmp_libs $deplib"
+ done
+
+ if test "$link_all_deplibs" != no; then
+ # Add the search paths of all dependency libraries
+ for deplib in $dependency_libs; do
+ case $deplib in
+ -L*) path="$deplib" ;;
+ *.la)
+ func_dirname "$deplib" "" "."
+ dir="$func_dirname_result"
+ # We need an absolute path.
+ case $dir in
+ [\\/]* | [A-Za-z]:[\\/]*) absdir="$dir" ;;
+ *)
+ absdir=`cd "$dir" && pwd`
+ if test -z "$absdir"; then
+ func_warning "cannot determine absolute directory name of \`$dir'"
+ absdir="$dir"
+ fi
+ ;;
+ esac
+ if $GREP "^installed=no" $deplib > /dev/null; then
+ case $host in
+ *-*-darwin*)
+ depdepl=
+ eval deplibrary_names=`${SED} -n -e 's/^library_names=\(.*\)$/\1/p' $deplib`
+ if test -n "$deplibrary_names" ; then
+ for tmp in $deplibrary_names ; do
+ depdepl=$tmp
+ done
+ if test -f "$absdir/$objdir/$depdepl" ; then
+ depdepl="$absdir/$objdir/$depdepl"
+ darwin_install_name=`${OTOOL} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'`
+ if test -z "$darwin_install_name"; then
+ darwin_install_name=`${OTOOL64} -L $depdepl | awk '{if (NR == 2) {print $1;exit}}'`
+ fi
+ compiler_flags="$compiler_flags ${wl}-dylib_file ${wl}${darwin_install_name}:${depdepl}"
+ linker_flags="$linker_flags -dylib_file ${darwin_install_name}:${depdepl}"
+ path=
+ fi
+ fi
+ ;;
+ *)
+ path="-L$absdir/$objdir"
+ ;;
+ esac
+ else
+ eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib`
+ test -z "$libdir" && \
+ func_fatal_error "\`$deplib' is not a valid libtool archive"
+ test "$absdir" != "$libdir" && \
+ func_warning "\`$deplib' seems to be moved"
+
+ path="-L$absdir"
+ fi
+ ;;
+ esac
+ case " $deplibs " in
+ *" $path "*) ;;
+ *) deplibs="$path $deplibs" ;;
+ esac
+ done
+ fi # link_all_deplibs != no
+ fi # linkmode = lib
+ done # for deplib in $libs
+ if test "$pass" = link; then
+ if test "$linkmode" = "prog"; then
+ compile_deplibs="$new_inherited_linker_flags $compile_deplibs"
+ finalize_deplibs="$new_inherited_linker_flags $finalize_deplibs"
+ else
+ compiler_flags="$compiler_flags "`$ECHO "X $new_inherited_linker_flags" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
+ fi
+ fi
+ dependency_libs="$newdependency_libs"
+ if test "$pass" = dlpreopen; then
+ # Link the dlpreopened libraries before other libraries
+ for deplib in $save_deplibs; do
+ deplibs="$deplib $deplibs"
+ done
+ fi
+ if test "$pass" != dlopen; then
+ if test "$pass" != conv; then
+ # Make sure lib_search_path contains only unique directories.
+ lib_search_path=
+ for dir in $newlib_search_path; do
+ case "$lib_search_path " in
+ *" $dir "*) ;;
+ *) lib_search_path="$lib_search_path $dir" ;;
+ esac
+ done
+ newlib_search_path=
+ fi
+
+ if test "$linkmode,$pass" != "prog,link"; then
+ vars="deplibs"
+ else
+ vars="compile_deplibs finalize_deplibs"
+ fi
+ for var in $vars dependency_libs; do
+ # Add libraries to $var in reverse order
+ eval tmp_libs=\"\$$var\"
+ new_libs=
+ for deplib in $tmp_libs; do
+ # FIXME: Pedantically, this is the right thing to do, so
+ # that some nasty dependency loop isn't accidentally
+ # broken:
+ #new_libs="$deplib $new_libs"
+ # Pragmatically, this seems to cause very few problems in
+ # practice:
+ case $deplib in
+ -L*) new_libs="$deplib $new_libs" ;;
+ -R*) ;;
+ *)
+ # And here is the reason: when a library appears more
+ # than once as an explicit dependence of a library, or
+ # is implicitly linked in more than once by the
+ # compiler, it is considered special, and multiple
+ # occurrences thereof are not removed. Compare this
+ # with having the same library being listed as a
+ # dependency of multiple other libraries: in this case,
+ # we know (pedantically, we assume) the library does not
+ # need to be listed more than once, so we keep only the
+ # last copy. This is not always right, but it is rare
+ # enough that we require users that really mean to play
+ # such unportable linking tricks to link the library
+ # using -Wl,-lname, so that libtool does not consider it
+ # for duplicate removal.
+ case " $specialdeplibs " in
+ *" $deplib "*) new_libs="$deplib $new_libs" ;;
+ *)
+ case " $new_libs " in
+ *" $deplib "*) ;;
+ *) new_libs="$deplib $new_libs" ;;
+ esac
+ ;;
+ esac
+ ;;
+ esac
+ done
+ tmp_libs=
+ for deplib in $new_libs; do
+ case $deplib in
+ -L*)
+ case " $tmp_libs " in
+ *" $deplib "*) ;;
+ *) tmp_libs="$tmp_libs $deplib" ;;
+ esac
+ ;;
+ *) tmp_libs="$tmp_libs $deplib" ;;
+ esac
+ done
+ eval $var=\"$tmp_libs\"
+ done # for var
+ fi
+ # Last step: remove runtime libs from dependency_libs
+ # (they stay in deplibs)
+ tmp_libs=
+ for i in $dependency_libs ; do
+ case " $predeps $postdeps $compiler_lib_search_path " in
+ *" $i "*)
+ i=""
+ ;;
+ esac
+ if test -n "$i" ; then
+ tmp_libs="$tmp_libs $i"
+ fi
+ done
+ dependency_libs=$tmp_libs
+ done # for pass
+ if test "$linkmode" = prog; then
+ dlfiles="$newdlfiles"
+ fi
+ if test "$linkmode" = prog || test "$linkmode" = lib; then
+ dlprefiles="$newdlprefiles"
+ fi
+
+ case $linkmode in
+ oldlib)
+ if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then
+ func_warning "\`-dlopen' is ignored for archives"
+ fi
+
+ case " $deplibs" in
+ *\ -l* | *\ -L*)
+ func_warning "\`-l' and \`-L' are ignored for archives" ;;
+ esac
+
+ test -n "$rpath" && \
+ func_warning "\`-rpath' is ignored for archives"
+
+ test -n "$xrpath" && \
+ func_warning "\`-R' is ignored for archives"
+
+ test -n "$vinfo" && \
+ func_warning "\`-version-info/-version-number' is ignored for archives"
+
+ test -n "$release" && \
+ func_warning "\`-release' is ignored for archives"
+
+ test -n "$export_symbols$export_symbols_regex" && \
+ func_warning "\`-export-symbols' is ignored for archives"
+
+ # Now set the variables for building old libraries.
+ build_libtool_libs=no
+ oldlibs="$output"
+ objs="$objs$old_deplibs"
+ ;;
+
+ lib)
+ # Make sure we only generate libraries of the form `libNAME.la'.
+ case $outputname in
+ lib*)
+ func_stripname 'lib' '.la' "$outputname"
+ name=$func_stripname_result
+ eval shared_ext=\"$shrext_cmds\"
+ eval libname=\"$libname_spec\"
+ ;;
+ *)
+ test "$module" = no && \
+ func_fatal_help "libtool library \`$output' must begin with \`lib'"
+
+ if test "$need_lib_prefix" != no; then
+ # Add the "lib" prefix for modules if required
+ func_stripname '' '.la' "$outputname"
+ name=$func_stripname_result
+ eval shared_ext=\"$shrext_cmds\"
+ eval libname=\"$libname_spec\"
+ else
+ func_stripname '' '.la' "$outputname"
+ libname=$func_stripname_result
+ fi
+ ;;
+ esac
+
+ if test -n "$objs"; then
+ if test "$deplibs_check_method" != pass_all; then
+ func_fatal_error "cannot build libtool library \`$output' from non-libtool objects on this host:$objs"
+ else
+ $ECHO
+ $ECHO "*** Warning: Linking the shared library $output against the non-libtool"
+ $ECHO "*** objects $objs is not portable!"
+ libobjs="$libobjs $objs"
+ fi
+ fi
+
+ test "$dlself" != no && \
+ func_warning "\`-dlopen self' is ignored for libtool libraries"
+
+ set dummy $rpath
+ shift
+ test "$#" -gt 1 && \
+ func_warning "ignoring multiple \`-rpath's for a libtool library"
+
+ install_libdir="$1"
+
+ oldlibs=
+ if test -z "$rpath"; then
+ if test "$build_libtool_libs" = yes; then
+ # Building a libtool convenience library.
+ # Some compilers have problems with a `.al' extension so
+ # convenience libraries should have the same extension an
+ # archive normally would.
+ oldlibs="$output_objdir/$libname.$libext $oldlibs"
+ build_libtool_libs=convenience
+ build_old_libs=yes
+ fi
+
+ test -n "$vinfo" && \
+ func_warning "\`-version-info/-version-number' is ignored for convenience libraries"
+
+ test -n "$release" && \
+ func_warning "\`-release' is ignored for convenience libraries"
+ else
+
+ # Parse the version information argument.
+ save_ifs="$IFS"; IFS=':'
+ set dummy $vinfo 0 0 0
+ shift
+ IFS="$save_ifs"
+
+ test -n "$7" && \
+ func_fatal_help "too many parameters to \`-version-info'"
+
+ # convert absolute version numbers to libtool ages
+ # this retains compatibility with .la files and attempts
+ # to make the code below a bit more comprehensible
+
+ case $vinfo_number in
+ yes)
+ number_major="$1"
+ number_minor="$2"
+ number_revision="$3"
+ #
+ # There are really only two kinds -- those that
+ # use the current revision as the major version
+ # and those that subtract age and use age as
+ # a minor version. But, then there is irix
+ # which has an extra 1 added just for fun
+ #
+ case $version_type in
+ darwin|linux|osf|windows|none)
+ func_arith $number_major + $number_minor
+ current=$func_arith_result
+ age="$number_minor"
+ revision="$number_revision"
+ ;;
+ freebsd-aout|freebsd-elf|sunos)
+ current="$number_major"
+ revision="$number_minor"
+ age="0"
+ ;;
+ irix|nonstopux)
+ func_arith $number_major + $number_minor
+ current=$func_arith_result
+ age="$number_minor"
+ revision="$number_minor"
+ lt_irix_increment=no
+ ;;
+ esac
+ ;;
+ no)
+ current="$1"
+ revision="$2"
+ age="$3"
+ ;;
+ esac
+
+ # Check that each of the things are valid numbers.
+ case $current in
+ 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;;
+ *)
+ func_error "CURRENT \`$current' must be a nonnegative integer"
+ func_fatal_error "\`$vinfo' is not valid version information"
+ ;;
+ esac
+
+ case $revision in
+ 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;;
+ *)
+ func_error "REVISION \`$revision' must be a nonnegative integer"
+ func_fatal_error "\`$vinfo' is not valid version information"
+ ;;
+ esac
+
+ case $age in
+ 0|[1-9]|[1-9][0-9]|[1-9][0-9][0-9]|[1-9][0-9][0-9][0-9]|[1-9][0-9][0-9][0-9][0-9]) ;;
+ *)
+ func_error "AGE \`$age' must be a nonnegative integer"
+ func_fatal_error "\`$vinfo' is not valid version information"
+ ;;
+ esac
+
+ if test "$age" -gt "$current"; then
+ func_error "AGE \`$age' is greater than the current interface number \`$current'"
+ func_fatal_error "\`$vinfo' is not valid version information"
+ fi
+
+ # Calculate the version variables.
+ major=
+ versuffix=
+ verstring=
+ case $version_type in
+ none) ;;
+
+ darwin)
+ # Like Linux, but with the current version available in
+ # verstring for coding it into the library header
+ func_arith $current - $age
+ major=.$func_arith_result
+ versuffix="$major.$age.$revision"
+ # Darwin ld doesn't like 0 for these options...
+ func_arith $current + 1
+ minor_current=$func_arith_result
+ xlcverstring="${wl}-compatibility_version ${wl}$minor_current ${wl}-current_version ${wl}$minor_current.$revision"
+ verstring="-compatibility_version $minor_current -current_version $minor_current.$revision"
+ ;;
+
+ freebsd-aout)
+ major=".$current"
+ versuffix=".$current.$revision";
+ ;;
+
+ freebsd-elf)
+ major=".$current"
+ versuffix=".$current"
+ ;;
+
+ irix | nonstopux)
+ if test "X$lt_irix_increment" = "Xno"; then
+ func_arith $current - $age
+ else
+ func_arith $current - $age + 1
+ fi
+ major=$func_arith_result
+
+ case $version_type in
+ nonstopux) verstring_prefix=nonstopux ;;
+ *) verstring_prefix=sgi ;;
+ esac
+ verstring="$verstring_prefix$major.$revision"
+
+ # Add in all the interfaces that we are compatible with.
+ loop=$revision
+ while test "$loop" -ne 0; do
+ func_arith $revision - $loop
+ iface=$func_arith_result
+ func_arith $loop - 1
+ loop=$func_arith_result
+ verstring="$verstring_prefix$major.$iface:$verstring"
+ done
+
+ # Before this point, $major must not contain `.'.
+ major=.$major
+ versuffix="$major.$revision"
+ ;;
+
+ linux)
+ func_arith $current - $age
+ major=.$func_arith_result
+ versuffix="$major.$age.$revision"
+ ;;
+
+ osf)
+ func_arith $current - $age
+ major=.$func_arith_result
+ versuffix=".$current.$age.$revision"
+ verstring="$current.$age.$revision"
+
+ # Add in all the interfaces that we are compatible with.
+ loop=$age
+ while test "$loop" -ne 0; do
+ func_arith $current - $loop
+ iface=$func_arith_result
+ func_arith $loop - 1
+ loop=$func_arith_result
+ verstring="$verstring:${iface}.0"
+ done
+
+ # Make executables depend on our current version.
+ verstring="$verstring:${current}.0"
+ ;;
+
+ qnx)
+ major=".$current"
+ versuffix=".$current"
+ ;;
+
+ sunos)
+ major=".$current"
+ versuffix=".$current.$revision"
+ ;;
+
+ windows)
+ # Use '-' rather than '.', since we only want one
+ # extension on DOS 8.3 filesystems.
+ func_arith $current - $age
+ major=$func_arith_result
+ versuffix="-$major"
+ ;;
+
+ *)
+ func_fatal_configuration "unknown library version type \`$version_type'"
+ ;;
+ esac
+
+ # Clear the version info if we defaulted, and they specified a release.
+ if test -z "$vinfo" && test -n "$release"; then
+ major=
+ case $version_type in
+ darwin)
+ # we can't check for "0.0" in archive_cmds due to quoting
+ # problems, so we reset it completely
+ verstring=
+ ;;
+ *)
+ verstring="0.0"
+ ;;
+ esac
+ if test "$need_version" = no; then
+ versuffix=
+ else
+ versuffix=".0.0"
+ fi
+ fi
+
+ # Remove version info from name if versioning should be avoided
+ if test "$avoid_version" = yes && test "$need_version" = no; then
+ major=
+ versuffix=
+ verstring=""
+ fi
+
+ # Check to see if the archive will have undefined symbols.
+ if test "$allow_undefined" = yes; then
+ if test "$allow_undefined_flag" = unsupported; then
+ func_warning "undefined symbols not allowed in $host shared libraries"
+ build_libtool_libs=no
+ build_old_libs=yes
+ fi
+ else
+ # Don't allow undefined symbols.
+ allow_undefined_flag="$no_undefined_flag"
+ fi
+
+ fi
+
+ func_generate_dlsyms "$libname" "$libname" "yes"
+ libobjs="$libobjs $symfileobj"
+ test "X$libobjs" = "X " && libobjs=
+
+ if test "$mode" != relink; then
+ # Remove our outputs, but don't remove object files since they
+ # may have been created when compiling PIC objects.
+ removelist=
+ tempremovelist=`$ECHO "$output_objdir/*"`
+ for p in $tempremovelist; do
+ case $p in
+ *.$objext | *.gcno)
+ ;;
+ $output_objdir/$outputname | $output_objdir/$libname.* | $output_objdir/${libname}${release}.*)
+ if test "X$precious_files_regex" != "X"; then
+ if $ECHO "$p" | $EGREP -e "$precious_files_regex" >/dev/null 2>&1
+ then
+ continue
+ fi
+ fi
+ removelist="$removelist $p"
+ ;;
+ *) ;;
+ esac
+ done
+ test -n "$removelist" && \
+ func_show_eval "${RM}r \$removelist"
+ fi
+
+ # Now set the variables for building old libraries.
+ if test "$build_old_libs" = yes && test "$build_libtool_libs" != convenience ; then
+ oldlibs="$oldlibs $output_objdir/$libname.$libext"
+
+ # Transform .lo files to .o files.
+ oldobjs="$objs "`$ECHO "X$libobjs" | $SP2NL | $Xsed -e '/\.'${libext}'$/d' -e "$lo2o" | $NL2SP`
+ fi
+
+ # Eliminate all temporary directories.
+ #for path in $notinst_path; do
+ # lib_search_path=`$ECHO "X$lib_search_path " | $Xsed -e "s% $path % %g"`
+ # deplibs=`$ECHO "X$deplibs " | $Xsed -e "s% -L$path % %g"`
+ # dependency_libs=`$ECHO "X$dependency_libs " | $Xsed -e "s% -L$path % %g"`
+ #done
+
+ if test -n "$xrpath"; then
+ # If the user specified any rpath flags, then add them.
+ temp_xrpath=
+ for libdir in $xrpath; do
+ temp_xrpath="$temp_xrpath -R$libdir"
+ case "$finalize_rpath " in
+ *" $libdir "*) ;;
+ *) finalize_rpath="$finalize_rpath $libdir" ;;
+ esac
+ done
+ if test "$hardcode_into_libs" != yes || test "$build_old_libs" = yes; then
+ dependency_libs="$temp_xrpath $dependency_libs"
+ fi
+ fi
+
+ # Make sure dlfiles contains only unique files that won't be dlpreopened
+ old_dlfiles="$dlfiles"
+ dlfiles=
+ for lib in $old_dlfiles; do
+ case " $dlprefiles $dlfiles " in
+ *" $lib "*) ;;
+ *) dlfiles="$dlfiles $lib" ;;
+ esac
+ done
+
+ # Make sure dlprefiles contains only unique files
+ old_dlprefiles="$dlprefiles"
+ dlprefiles=
+ for lib in $old_dlprefiles; do
+ case "$dlprefiles " in
+ *" $lib "*) ;;
+ *) dlprefiles="$dlprefiles $lib" ;;
+ esac
+ done
+
+ if test "$build_libtool_libs" = yes; then
+ if test -n "$rpath"; then
+ case $host in
+ *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-*-beos* | *-cegcc*)
+ # these systems don't actually have a c library (as such)!
+ ;;
+ *-*-rhapsody* | *-*-darwin1.[012])
+ # Rhapsody C library is in the System framework
+ deplibs="$deplibs System.ltframework"
+ ;;
+ *-*-netbsd*)
+ # Don't link with libc until the a.out ld.so is fixed.
+ ;;
+ *-*-openbsd* | *-*-freebsd* | *-*-dragonfly*)
+ # Do not include libc due to us having libc/libc_r.
+ ;;
+ *-*-sco3.2v5* | *-*-sco5v6*)
+ # Causes problems with __ctype
+ ;;
+ *-*-sysv4.2uw2* | *-*-sysv5* | *-*-unixware* | *-*-OpenUNIX*)
+ # Compiler inserts libc in the correct place for threads to work
+ ;;
+ *)
+ # Add libc to deplibs on all other systems if necessary.
+ if test "$build_libtool_need_lc" = "yes"; then
+ deplibs="$deplibs -lc"
+ fi
+ ;;
+ esac
+ fi
+
+ # Transform deplibs into only deplibs that can be linked in shared.
+ name_save=$name
+ libname_save=$libname
+ release_save=$release
+ versuffix_save=$versuffix
+ major_save=$major
+ # I'm not sure if I'm treating the release correctly. I think
+ # release should show up in the -l (ie -lgmp5) so we don't want to
+ # add it in twice. Is that correct?
+ release=""
+ versuffix=""
+ major=""
+ newdeplibs=
+ droppeddeps=no
+ case $deplibs_check_method in
+ pass_all)
+ # Don't check for shared/static. Everything works.
+ # This might be a little naive. We might want to check
+ # whether the library exists or not. But this is on
+ # osf3 & osf4 and I'm not really sure... Just
+ # implementing what was already the behavior.
+ newdeplibs=$deplibs
+ ;;
+ test_compile)
+ # This code stresses the "libraries are programs" paradigm to its
+ # limits. Maybe even breaks it. We compile a program, linking it
+ # against the deplibs as a proxy for the library. Then we can check
+ # whether they linked in statically or dynamically with ldd.
+ $opt_dry_run || $RM conftest.c
+ cat > conftest.c <<EOF
+ int main() { return 0; }
+EOF
+ $opt_dry_run || $RM conftest
+ if $LTCC $LTCFLAGS -o conftest conftest.c $deplibs; then
+ ldd_output=`ldd conftest`
+ for i in $deplibs; do
+ case $i in
+ -l*)
+ func_stripname -l '' "$i"
+ name=$func_stripname_result
+ if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then
+ case " $predeps $postdeps " in
+ *" $i "*)
+ newdeplibs="$newdeplibs $i"
+ i=""
+ ;;
+ esac
+ fi
+ if test -n "$i" ; then
+ libname=`eval "\\$ECHO \"$libname_spec\""`
+ deplib_matches=`eval "\\$ECHO \"$library_names_spec\""`
+ set dummy $deplib_matches; shift
+ deplib_match=$1
+ if test `expr "$ldd_output" : ".*$deplib_match"` -ne 0 ; then
+ newdeplibs="$newdeplibs $i"
+ else
+ droppeddeps=yes
+ $ECHO
+ $ECHO "*** Warning: dynamic linker does not accept needed library $i."
+ $ECHO "*** I have the capability to make that library automatically link in when"
+ $ECHO "*** you link to this library. But I can only do this if you have a"
+ $ECHO "*** shared version of the library, which I believe you do not have"
+ $ECHO "*** because a test_compile did reveal that the linker did not use it for"
+ $ECHO "*** its dynamic dependency list that programs get resolved with at runtime."
+ fi
+ fi
+ ;;
+ *)
+ newdeplibs="$newdeplibs $i"
+ ;;
+ esac
+ done
+ else
+ # Error occurred in the first compile. Let's try to salvage
+ # the situation: Compile a separate program for each library.
+ for i in $deplibs; do
+ case $i in
+ -l*)
+ func_stripname -l '' "$i"
+ name=$func_stripname_result
+ $opt_dry_run || $RM conftest
+ if $LTCC $LTCFLAGS -o conftest conftest.c $i; then
+ ldd_output=`ldd conftest`
+ if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then
+ case " $predeps $postdeps " in
+ *" $i "*)
+ newdeplibs="$newdeplibs $i"
+ i=""
+ ;;
+ esac
+ fi
+ if test -n "$i" ; then
+ libname=`eval "\\$ECHO \"$libname_spec\""`
+ deplib_matches=`eval "\\$ECHO \"$library_names_spec\""`
+ set dummy $deplib_matches; shift
+ deplib_match=$1
+ if test `expr "$ldd_output" : ".*$deplib_match"` -ne 0 ; then
+ newdeplibs="$newdeplibs $i"
+ else
+ droppeddeps=yes
+ $ECHO
+ $ECHO "*** Warning: dynamic linker does not accept needed library $i."
+ $ECHO "*** I have the capability to make that library automatically link in when"
+ $ECHO "*** you link to this library. But I can only do this if you have a"
+ $ECHO "*** shared version of the library, which you do not appear to have"
+ $ECHO "*** because a test_compile did reveal that the linker did not use this one"
+ $ECHO "*** as a dynamic dependency that programs can get resolved with at runtime."
+ fi
+ fi
+ else
+ droppeddeps=yes
+ $ECHO
+ $ECHO "*** Warning! Library $i is needed by this library but I was not able to"
+ $ECHO "*** make it link in! You will probably need to install it or some"
+ $ECHO "*** library that it depends on before this library will be fully"
+ $ECHO "*** functional. Installing it before continuing would be even better."
+ fi
+ ;;
+ *)
+ newdeplibs="$newdeplibs $i"
+ ;;
+ esac
+ done
+ fi
+ ;;
+ file_magic*)
+ set dummy $deplibs_check_method; shift
+ file_magic_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
+ for a_deplib in $deplibs; do
+ case $a_deplib in
+ -l*)
+ func_stripname -l '' "$a_deplib"
+ name=$func_stripname_result
+ if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then
+ case " $predeps $postdeps " in
+ *" $a_deplib "*)
+ newdeplibs="$newdeplibs $a_deplib"
+ a_deplib=""
+ ;;
+ esac
+ fi
+ if test -n "$a_deplib" ; then
+ libname=`eval "\\$ECHO \"$libname_spec\""`
+ for i in $lib_search_path $sys_lib_search_path $shlib_search_path; do
+ potential_libs=`ls $i/$libname[.-]* 2>/dev/null`
+ for potent_lib in $potential_libs; do
+ # Follow soft links.
+ if ls -lLd "$potent_lib" 2>/dev/null |
+ $GREP " -> " >/dev/null; then
+ continue
+ fi
+ # The statement above tries to avoid entering an
+ # endless loop below, in case of cyclic links.
+ # We might still enter an endless loop, since a link
+ # loop can be closed while we follow links,
+ # but so what?
+ potlib="$potent_lib"
+ while test -h "$potlib" 2>/dev/null; do
+ potliblink=`ls -ld $potlib | ${SED} 's/.* -> //'`
+ case $potliblink in
+ [\\/]* | [A-Za-z]:[\\/]*) potlib="$potliblink";;
+ *) potlib=`$ECHO "X$potlib" | $Xsed -e 's,[^/]*$,,'`"$potliblink";;
+ esac
+ done
+ if eval $file_magic_cmd \"\$potlib\" 2>/dev/null |
+ $SED -e 10q |
+ $EGREP "$file_magic_regex" > /dev/null; then
+ newdeplibs="$newdeplibs $a_deplib"
+ a_deplib=""
+ break 2
+ fi
+ done
+ done
+ fi
+ if test -n "$a_deplib" ; then
+ droppeddeps=yes
+ $ECHO
+ $ECHO "*** Warning: linker path does not have real file for library $a_deplib."
+ $ECHO "*** I have the capability to make that library automatically link in when"
+ $ECHO "*** you link to this library. But I can only do this if you have a"
+ $ECHO "*** shared version of the library, which you do not appear to have"
+ $ECHO "*** because I did check the linker path looking for a file starting"
+ if test -z "$potlib" ; then
+ $ECHO "*** with $libname but no candidates were found. (...for file magic test)"
+ else
+ $ECHO "*** with $libname and none of the candidates passed a file format test"
+ $ECHO "*** using a file magic. Last file checked: $potlib"
+ fi
+ fi
+ ;;
+ *)
+ # Add a -L argument.
+ newdeplibs="$newdeplibs $a_deplib"
+ ;;
+ esac
+ done # Gone through all deplibs.
+ ;;
+ match_pattern*)
+ set dummy $deplibs_check_method; shift
+ match_pattern_regex=`expr "$deplibs_check_method" : "$1 \(.*\)"`
+ for a_deplib in $deplibs; do
+ case $a_deplib in
+ -l*)
+ func_stripname -l '' "$a_deplib"
+ name=$func_stripname_result
+ if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then
+ case " $predeps $postdeps " in
+ *" $a_deplib "*)
+ newdeplibs="$newdeplibs $a_deplib"
+ a_deplib=""
+ ;;
+ esac
+ fi
+ if test -n "$a_deplib" ; then
+ libname=`eval "\\$ECHO \"$libname_spec\""`
+ for i in $lib_search_path $sys_lib_search_path $shlib_search_path; do
+ potential_libs=`ls $i/$libname[.-]* 2>/dev/null`
+ for potent_lib in $potential_libs; do
+ potlib="$potent_lib" # see symlink-check above in file_magic test
+ if eval "\$ECHO \"X$potent_lib\"" 2>/dev/null | $Xsed -e 10q | \
+ $EGREP "$match_pattern_regex" > /dev/null; then
+ newdeplibs="$newdeplibs $a_deplib"
+ a_deplib=""
+ break 2
+ fi
+ done
+ done
+ fi
+ if test -n "$a_deplib" ; then
+ droppeddeps=yes
+ $ECHO
+ $ECHO "*** Warning: linker path does not have real file for library $a_deplib."
+ $ECHO "*** I have the capability to make that library automatically link in when"
+ $ECHO "*** you link to this library. But I can only do this if you have a"
+ $ECHO "*** shared version of the library, which you do not appear to have"
+ $ECHO "*** because I did check the linker path looking for a file starting"
+ if test -z "$potlib" ; then
+ $ECHO "*** with $libname but no candidates were found. (...for regex pattern test)"
+ else
+ $ECHO "*** with $libname and none of the candidates passed a file format test"
+ $ECHO "*** using a regex pattern. Last file checked: $potlib"
+ fi
+ fi
+ ;;
+ *)
+ # Add a -L argument.
+ newdeplibs="$newdeplibs $a_deplib"
+ ;;
+ esac
+ done # Gone through all deplibs.
+ ;;
+ none | unknown | *)
+ newdeplibs=""
+ tmp_deplibs=`$ECHO "X $deplibs" | $Xsed \
+ -e 's/ -lc$//' -e 's/ -[LR][^ ]*//g'`
+ if test "X$allow_libtool_libs_with_static_runtimes" = "Xyes" ; then
+ for i in $predeps $postdeps ; do
+ # can't use Xsed below, because $i might contain '/'
+ tmp_deplibs=`$ECHO "X $tmp_deplibs" | $Xsed -e "s,$i,,"`
+ done
+ fi
+ if $ECHO "X $tmp_deplibs" | $Xsed -e 's/[ ]//g' |
+ $GREP . >/dev/null; then
+ $ECHO
+ if test "X$deplibs_check_method" = "Xnone"; then
+ $ECHO "*** Warning: inter-library dependencies are not supported in this platform."
+ else
+ $ECHO "*** Warning: inter-library dependencies are not known to be supported."
+ fi
+ $ECHO "*** All declared inter-library dependencies are being dropped."
+ droppeddeps=yes
+ fi
+ ;;
+ esac
+ versuffix=$versuffix_save
+ major=$major_save
+ release=$release_save
+ libname=$libname_save
+ name=$name_save
+
+ case $host in
+ *-*-rhapsody* | *-*-darwin1.[012])
+ # On Rhapsody replace the C library with the System framework
+ newdeplibs=`$ECHO "X $newdeplibs" | $Xsed -e 's/ -lc / System.ltframework /'`
+ ;;
+ esac
+
+ if test "$droppeddeps" = yes; then
+ if test "$module" = yes; then
+ $ECHO
+ $ECHO "*** Warning: libtool could not satisfy all declared inter-library"
+ $ECHO "*** dependencies of module $libname. Therefore, libtool will create"
+ $ECHO "*** a static module, that should work as long as the dlopening"
+ $ECHO "*** application is linked with the -dlopen flag."
+ if test -z "$global_symbol_pipe"; then
+ $ECHO
+ $ECHO "*** However, this would only work if libtool was able to extract symbol"
+ $ECHO "*** lists from a program, using \`nm' or equivalent, but libtool could"
+ $ECHO "*** not find such a program. So, this module is probably useless."
+ $ECHO "*** \`nm' from GNU binutils and a full rebuild may help."
+ fi
+ if test "$build_old_libs" = no; then
+ oldlibs="$output_objdir/$libname.$libext"
+ build_libtool_libs=module
+ build_old_libs=yes
+ else
+ build_libtool_libs=no
+ fi
+ else
+ $ECHO "*** The inter-library dependencies that have been dropped here will be"
+ $ECHO "*** automatically added whenever a program is linked with this library"
+ $ECHO "*** or is declared to -dlopen it."
+
+ if test "$allow_undefined" = no; then
+ $ECHO
+ $ECHO "*** Since this library must not contain undefined symbols,"
+ $ECHO "*** because either the platform does not support them or"
+ $ECHO "*** it was explicitly requested with -no-undefined,"
+ $ECHO "*** libtool will only create a static version of it."
+ if test "$build_old_libs" = no; then
+ oldlibs="$output_objdir/$libname.$libext"
+ build_libtool_libs=module
+ build_old_libs=yes
+ else
+ build_libtool_libs=no
+ fi
+ fi
+ fi
+ fi
+ # Done checking deplibs!
+ deplibs=$newdeplibs
+ fi
+ # Time to change all our "foo.ltframework" stuff back to "-framework foo"
+ case $host in
+ *-*-darwin*)
+ newdeplibs=`$ECHO "X $newdeplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
+ new_inherited_linker_flags=`$ECHO "X $new_inherited_linker_flags" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
+ deplibs=`$ECHO "X $deplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
+ ;;
+ esac
+
+ # move library search paths that coincide with paths to not yet
+ # installed libraries to the beginning of the library search list
+ new_libs=
+ for path in $notinst_path; do
+ case " $new_libs " in
+ *" -L$path/$objdir "*) ;;
+ *)
+ case " $deplibs " in
+ *" -L$path/$objdir "*)
+ new_libs="$new_libs -L$path/$objdir" ;;
+ esac
+ ;;
+ esac
+ done
+ for deplib in $deplibs; do
+ case $deplib in
+ -L*)
+ case " $new_libs " in
+ *" $deplib "*) ;;
+ *) new_libs="$new_libs $deplib" ;;
+ esac
+ ;;
+ *) new_libs="$new_libs $deplib" ;;
+ esac
+ done
+ deplibs="$new_libs"
+
+ # All the library-specific variables (install_libdir is set above).
+ library_names=
+ old_library=
+ dlname=
+
+ # Test again, we may have decided not to build it any more
+ if test "$build_libtool_libs" = yes; then
+ if test "$hardcode_into_libs" = yes; then
+ # Hardcode the library paths
+ hardcode_libdirs=
+ dep_rpath=
+ rpath="$finalize_rpath"
+ test "$mode" != relink && rpath="$compile_rpath$rpath"
+ for libdir in $rpath; do
+ if test -n "$hardcode_libdir_flag_spec"; then
+ if test -n "$hardcode_libdir_separator"; then
+ if test -z "$hardcode_libdirs"; then
+ hardcode_libdirs="$libdir"
+ else
+ # Just accumulate the unique libdirs.
+ case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in
+ *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*)
+ ;;
+ *)
+ hardcode_libdirs="$hardcode_libdirs$hardcode_libdir_separator$libdir"
+ ;;
+ esac
+ fi
+ else
+ eval flag=\"$hardcode_libdir_flag_spec\"
+ dep_rpath="$dep_rpath $flag"
+ fi
+ elif test -n "$runpath_var"; then
+ case "$perm_rpath " in
+ *" $libdir "*) ;;
+ *) perm_rpath="$perm_rpath $libdir" ;;
+ esac
+ fi
+ done
+ # Substitute the hardcoded libdirs into the rpath.
+ if test -n "$hardcode_libdir_separator" &&
+ test -n "$hardcode_libdirs"; then
+ libdir="$hardcode_libdirs"
+ if test -n "$hardcode_libdir_flag_spec_ld"; then
+ eval dep_rpath=\"$hardcode_libdir_flag_spec_ld\"
+ else
+ eval dep_rpath=\"$hardcode_libdir_flag_spec\"
+ fi
+ fi
+ if test -n "$runpath_var" && test -n "$perm_rpath"; then
+ # We should set the runpath_var.
+ rpath=
+ for dir in $perm_rpath; do
+ rpath="$rpath$dir:"
+ done
+ eval "$runpath_var='$rpath\$$runpath_var'; export $runpath_var"
+ fi
+ test -n "$dep_rpath" && deplibs="$dep_rpath $deplibs"
+ fi
+
+ shlibpath="$finalize_shlibpath"
+ test "$mode" != relink && shlibpath="$compile_shlibpath$shlibpath"
+ if test -n "$shlibpath"; then
+ eval "$shlibpath_var='$shlibpath\$$shlibpath_var'; export $shlibpath_var"
+ fi
+
+ # Get the real and link names of the library.
+ eval shared_ext=\"$shrext_cmds\"
+ eval library_names=\"$library_names_spec\"
+ set dummy $library_names
+ shift
+ realname="$1"
+ shift
+
+ if test -n "$soname_spec"; then
+ eval soname=\"$soname_spec\"
+ else
+ soname="$realname"
+ fi
+ if test -z "$dlname"; then
+ dlname=$soname
+ fi
+
+ lib="$output_objdir/$realname"
+ linknames=
+ for link
+ do
+ linknames="$linknames $link"
+ done
+
+ # Use standard objects if they are pic
+ test -z "$pic_flag" && libobjs=`$ECHO "X$libobjs" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
+ test "X$libobjs" = "X " && libobjs=
+
+ delfiles=
+ if test -n "$export_symbols" && test -n "$include_expsyms"; then
+ $opt_dry_run || cp "$export_symbols" "$output_objdir/$libname.uexp"
+ export_symbols="$output_objdir/$libname.uexp"
+ delfiles="$delfiles $export_symbols"
+ fi
+
+ orig_export_symbols=
+ case $host_os in
+ cygwin* | mingw* | cegcc*)
+ if test -n "$export_symbols" && test -z "$export_symbols_regex"; then
+ # exporting using user supplied symfile
+ if test "x`$SED 1q $export_symbols`" != xEXPORTS; then
+ # and it's NOT already a .def file. Must figure out
+ # which of the given symbols are data symbols and tag
+ # them as such. So, trigger use of export_symbols_cmds.
+ # export_symbols gets reassigned inside the "prepare
+ # the list of exported symbols" if statement, so the
+ # include_expsyms logic still works.
+ orig_export_symbols="$export_symbols"
+ export_symbols=
+ always_export_symbols=yes
+ fi
+ fi
+ ;;
+ esac
+
+ # Prepare the list of exported symbols
+ if test -z "$export_symbols"; then
+ if test "$always_export_symbols" = yes || test -n "$export_symbols_regex"; then
+ func_verbose "generating symbol list for \`$libname.la'"
+ export_symbols="$output_objdir/$libname.exp"
+ $opt_dry_run || $RM $export_symbols
+ cmds=$export_symbols_cmds
+ save_ifs="$IFS"; IFS='~'
+ for cmd in $cmds; do
+ IFS="$save_ifs"
+ eval cmd=\"$cmd\"
+ func_len " $cmd"
+ len=$func_len_result
+ if test "$len" -lt "$max_cmd_len" || test "$max_cmd_len" -le -1; then
+ func_show_eval "$cmd" 'exit $?'
+ skipped_export=false
+ else
+ # The command line is too long to execute in one step.
+ func_verbose "using reloadable object file for export list..."
+ skipped_export=:
+ # Break out early, otherwise skipped_export may be
+ # set to false by a later but shorter cmd.
+ break
+ fi
+ done
+ IFS="$save_ifs"
+ if test -n "$export_symbols_regex" && test "X$skipped_export" != "X:"; then
+ func_show_eval '$EGREP -e "$export_symbols_regex" "$export_symbols" > "${export_symbols}T"'
+ func_show_eval '$MV "${export_symbols}T" "$export_symbols"'
+ fi
+ fi
+ fi
+
+ if test -n "$export_symbols" && test -n "$include_expsyms"; then
+ tmp_export_symbols="$export_symbols"
+ test -n "$orig_export_symbols" && tmp_export_symbols="$orig_export_symbols"
+ $opt_dry_run || eval '$ECHO "X$include_expsyms" | $Xsed | $SP2NL >> "$tmp_export_symbols"'
+ fi
+
+ if test "X$skipped_export" != "X:" && test -n "$orig_export_symbols"; then
+ # The given exports_symbols file has to be filtered, so filter it.
+ func_verbose "filter symbol list for \`$libname.la' to tag DATA exports"
+ # FIXME: $output_objdir/$libname.filter potentially contains lots of
+ # 's' commands which not all seds can handle. GNU sed should be fine
+ # though. Also, the filter scales superlinearly with the number of
+ # global variables. join(1) would be nice here, but unfortunately
+ # isn't a blessed tool.
+ $opt_dry_run || $SED -e '/[ ,]DATA/!d;s,\(.*\)\([ \,].*\),s|^\1$|\1\2|,' < $export_symbols > $output_objdir/$libname.filter
+ delfiles="$delfiles $export_symbols $output_objdir/$libname.filter"
+ export_symbols=$output_objdir/$libname.def
+ $opt_dry_run || $SED -f $output_objdir/$libname.filter < $orig_export_symbols > $export_symbols
+ fi
+
+ tmp_deplibs=
+ for test_deplib in $deplibs; do
+ case " $convenience " in
+ *" $test_deplib "*) ;;
+ *)
+ tmp_deplibs="$tmp_deplibs $test_deplib"
+ ;;
+ esac
+ done
+ deplibs="$tmp_deplibs"
+
+ if test -n "$convenience"; then
+ if test -n "$whole_archive_flag_spec" &&
+ test "$compiler_needs_object" = yes &&
+ test -z "$libobjs"; then
+ # extract the archives, so we have objects to list.
+ # TODO: could optimize this to just extract one archive.
+ whole_archive_flag_spec=
+ fi
+ if test -n "$whole_archive_flag_spec"; then
+ save_libobjs=$libobjs
+ eval libobjs=\"\$libobjs $whole_archive_flag_spec\"
+ test "X$libobjs" = "X " && libobjs=
+ else
+ gentop="$output_objdir/${outputname}x"
+ generated="$generated $gentop"
+
+ func_extract_archives $gentop $convenience
+ libobjs="$libobjs $func_extract_archives_result"
+ test "X$libobjs" = "X " && libobjs=
+ fi
+ fi
+
+ if test "$thread_safe" = yes && test -n "$thread_safe_flag_spec"; then
+ eval flag=\"$thread_safe_flag_spec\"
+ linker_flags="$linker_flags $flag"
+ fi
+
+ # Make a backup of the uninstalled library when relinking
+ if test "$mode" = relink; then
+ $opt_dry_run || eval '(cd $output_objdir && $RM ${realname}U && $MV $realname ${realname}U)' || exit $?
+ fi
+
+ # Do each of the archive commands.
+ if test "$module" = yes && test -n "$module_cmds" ; then
+ if test -n "$export_symbols" && test -n "$module_expsym_cmds"; then
+ eval test_cmds=\"$module_expsym_cmds\"
+ cmds=$module_expsym_cmds
+ else
+ eval test_cmds=\"$module_cmds\"
+ cmds=$module_cmds
+ fi
+ else
+ if test -n "$export_symbols" && test -n "$archive_expsym_cmds"; then
+ eval test_cmds=\"$archive_expsym_cmds\"
+ cmds=$archive_expsym_cmds
+ else
+ eval test_cmds=\"$archive_cmds\"
+ cmds=$archive_cmds
+ fi
+ fi
+
+ if test "X$skipped_export" != "X:" &&
+ func_len " $test_cmds" &&
+ len=$func_len_result &&
+ test "$len" -lt "$max_cmd_len" || test "$max_cmd_len" -le -1; then
+ :
+ else
+ # The command line is too long to link in one step, link piecewise
+ # or, if using GNU ld and skipped_export is not :, use a linker
+ # script.
+
+ # Save the value of $output and $libobjs because we want to
+ # use them later. If we have whole_archive_flag_spec, we
+ # want to use save_libobjs as it was before
+ # whole_archive_flag_spec was expanded, because we can't
+ # assume the linker understands whole_archive_flag_spec.
+ # This may have to be revisited, in case too many
+ # convenience libraries get linked in and end up exceeding
+ # the spec.
+ if test -z "$convenience" || test -z "$whole_archive_flag_spec"; then
+ save_libobjs=$libobjs
+ fi
+ save_output=$output
+ output_la=`$ECHO "X$output" | $Xsed -e "$basename"`
+
+ # Clear the reloadable object creation command queue and
+ # initialize k to one.
+ test_cmds=
+ concat_cmds=
+ objlist=
+ last_robj=
+ k=1
+
+ if test -n "$save_libobjs" && test "X$skipped_export" != "X:" && test "$with_gnu_ld" = yes; then
+ output=${output_objdir}/${output_la}.lnkscript
+ func_verbose "creating GNU ld script: $output"
+ $ECHO 'INPUT (' > $output
+ for obj in $save_libobjs
+ do
+ $ECHO "$obj" >> $output
+ done
+ $ECHO ')' >> $output
+ delfiles="$delfiles $output"
+ elif test -n "$save_libobjs" && test "X$skipped_export" != "X:" && test "X$file_list_spec" != X; then
+ output=${output_objdir}/${output_la}.lnk
+ func_verbose "creating linker input file list: $output"
+ : > $output
+ set x $save_libobjs
+ shift
+ firstobj=
+ if test "$compiler_needs_object" = yes; then
+ firstobj="$1 "
+ shift
+ fi
+ for obj
+ do
+ $ECHO "$obj" >> $output
+ done
+ delfiles="$delfiles $output"
+ output=$firstobj\"$file_list_spec$output\"
+ else
+ if test -n "$save_libobjs"; then
+ func_verbose "creating reloadable object files..."
+ output=$output_objdir/$output_la-${k}.$objext
+ eval test_cmds=\"$reload_cmds\"
+ func_len " $test_cmds"
+ len0=$func_len_result
+ len=$len0
+
+ # Loop over the list of objects to be linked.
+ for obj in $save_libobjs
+ do
+ func_len " $obj"
+ func_arith $len + $func_len_result
+ len=$func_arith_result
+ if test "X$objlist" = X ||
+ test "$len" -lt "$max_cmd_len"; then
+ func_append objlist " $obj"
+ else
+ # The command $test_cmds is almost too long, add a
+ # command to the queue.
+ if test "$k" -eq 1 ; then
+ # The first file doesn't have a previous command to add.
+ eval concat_cmds=\"$reload_cmds $objlist $last_robj\"
+ else
+ # All subsequent reloadable object files will link in
+ # the last one created.
+ eval concat_cmds=\"\$concat_cmds~$reload_cmds $objlist $last_robj~\$RM $last_robj\"
+ fi
+ last_robj=$output_objdir/$output_la-${k}.$objext
+ func_arith $k + 1
+ k=$func_arith_result
+ output=$output_objdir/$output_la-${k}.$objext
+ objlist=$obj
+ func_len " $last_robj"
+ func_arith $len0 + $func_len_result
+ len=$func_arith_result
+ fi
+ done
+ # Handle the remaining objects by creating one last
+ # reloadable object file. All subsequent reloadable object
+ # files will link in the last one created.
+ test -z "$concat_cmds" || concat_cmds=$concat_cmds~
+ eval concat_cmds=\"\${concat_cmds}$reload_cmds $objlist $last_robj\"
+ if test -n "$last_robj"; then
+ eval concat_cmds=\"\${concat_cmds}~\$RM $last_robj\"
+ fi
+ delfiles="$delfiles $output"
+
+ else
+ output=
+ fi
+
+ if ${skipped_export-false}; then
+ func_verbose "generating symbol list for \`$libname.la'"
+ export_symbols="$output_objdir/$libname.exp"
+ $opt_dry_run || $RM $export_symbols
+ libobjs=$output
+ # Append the command to create the export file.
+ test -z "$concat_cmds" || concat_cmds=$concat_cmds~
+ eval concat_cmds=\"\$concat_cmds$export_symbols_cmds\"
+ if test -n "$last_robj"; then
+ eval concat_cmds=\"\$concat_cmds~\$RM $last_robj\"
+ fi
+ fi
+
+ test -n "$save_libobjs" &&
+ func_verbose "creating a temporary reloadable object file: $output"
+
+ # Loop through the commands generated above and execute them.
+ save_ifs="$IFS"; IFS='~'
+ for cmd in $concat_cmds; do
+ IFS="$save_ifs"
+ $opt_silent || {
+ func_quote_for_expand "$cmd"
+ eval "func_echo $func_quote_for_expand_result"
+ }
+ $opt_dry_run || eval "$cmd" || {
+ lt_exit=$?
+
+ # Restore the uninstalled library and exit
+ if test "$mode" = relink; then
+ ( cd "$output_objdir" && \
+ $RM "${realname}T" && \
+ $MV "${realname}U" "$realname" )
+ fi
+
+ exit $lt_exit
+ }
+ done
+ IFS="$save_ifs"
+
+ if test -n "$export_symbols_regex" && ${skipped_export-false}; then
+ func_show_eval '$EGREP -e "$export_symbols_regex" "$export_symbols" > "${export_symbols}T"'
+ func_show_eval '$MV "${export_symbols}T" "$export_symbols"'
+ fi
+ fi
+
+ if ${skipped_export-false}; then
+ if test -n "$export_symbols" && test -n "$include_expsyms"; then
+ tmp_export_symbols="$export_symbols"
+ test -n "$orig_export_symbols" && tmp_export_symbols="$orig_export_symbols"
+ $opt_dry_run || eval '$ECHO "X$include_expsyms" | $Xsed | $SP2NL >> "$tmp_export_symbols"'
+ fi
+
+ if test -n "$orig_export_symbols"; then
+ # The given exports_symbols file has to be filtered, so filter it.
+ func_verbose "filter symbol list for \`$libname.la' to tag DATA exports"
+ # FIXME: $output_objdir/$libname.filter potentially contains lots of
+ # 's' commands which not all seds can handle. GNU sed should be fine
+ # though. Also, the filter scales superlinearly with the number of
+ # global variables. join(1) would be nice here, but unfortunately
+ # isn't a blessed tool.
+ $opt_dry_run || $SED -e '/[ ,]DATA/!d;s,\(.*\)\([ \,].*\),s|^\1$|\1\2|,' < $export_symbols > $output_objdir/$libname.filter
+ delfiles="$delfiles $export_symbols $output_objdir/$libname.filter"
+ export_symbols=$output_objdir/$libname.def
+ $opt_dry_run || $SED -f $output_objdir/$libname.filter < $orig_export_symbols > $export_symbols
+ fi
+ fi
+
+ libobjs=$output
+ # Restore the value of output.
+ output=$save_output
+
+ if test -n "$convenience" && test -n "$whole_archive_flag_spec"; then
+ eval libobjs=\"\$libobjs $whole_archive_flag_spec\"
+ test "X$libobjs" = "X " && libobjs=
+ fi
+ # Expand the library linking commands again to reset the
+ # value of $libobjs for piecewise linking.
+
+ # Do each of the archive commands.
+ if test "$module" = yes && test -n "$module_cmds" ; then
+ if test -n "$export_symbols" && test -n "$module_expsym_cmds"; then
+ cmds=$module_expsym_cmds
+ else
+ cmds=$module_cmds
+ fi
+ else
+ if test -n "$export_symbols" && test -n "$archive_expsym_cmds"; then
+ cmds=$archive_expsym_cmds
+ else
+ cmds=$archive_cmds
+ fi
+ fi
+ fi
+
+ if test -n "$delfiles"; then
+ # Append the command to remove temporary files to $cmds.
+ eval cmds=\"\$cmds~\$RM $delfiles\"
+ fi
+
+ # Add any objects from preloaded convenience libraries
+ if test -n "$dlprefiles"; then
+ gentop="$output_objdir/${outputname}x"
+ generated="$generated $gentop"
+
+ func_extract_archives $gentop $dlprefiles
+ libobjs="$libobjs $func_extract_archives_result"
+ test "X$libobjs" = "X " && libobjs=
+ fi
+
+ save_ifs="$IFS"; IFS='~'
+ for cmd in $cmds; do
+ IFS="$save_ifs"
+ eval cmd=\"$cmd\"
+ $opt_silent || {
+ func_quote_for_expand "$cmd"
+ eval "func_echo $func_quote_for_expand_result"
+ }
+ $opt_dry_run || eval "$cmd" || {
+ lt_exit=$?
+
+ # Restore the uninstalled library and exit
+ if test "$mode" = relink; then
+ ( cd "$output_objdir" && \
+ $RM "${realname}T" && \
+ $MV "${realname}U" "$realname" )
+ fi
+
+ exit $lt_exit
+ }
+ done
+ IFS="$save_ifs"
+
+ # Restore the uninstalled library and exit
+ if test "$mode" = relink; then
+ $opt_dry_run || eval '(cd $output_objdir && $RM ${realname}T && $MV $realname ${realname}T && $MV ${realname}U $realname)' || exit $?
+
+ if test -n "$convenience"; then
+ if test -z "$whole_archive_flag_spec"; then
+ func_show_eval '${RM}r "$gentop"'
+ fi
+ fi
+
+ exit $EXIT_SUCCESS
+ fi
+
+ # Create links to the real library.
+ for linkname in $linknames; do
+ if test "$realname" != "$linkname"; then
+ func_show_eval '(cd "$output_objdir" && $RM "$linkname" && $LN_S "$realname" "$linkname")' 'exit $?'
+ fi
+ done
+
+ # If -module or -export-dynamic was specified, set the dlname.
+ if test "$module" = yes || test "$export_dynamic" = yes; then
+ # On all known operating systems, these are identical.
+ dlname="$soname"
+ fi
+ fi
+ ;;
+
+ obj)
+ if test -n "$dlfiles$dlprefiles" || test "$dlself" != no; then
+ func_warning "\`-dlopen' is ignored for objects"
+ fi
+
+ case " $deplibs" in
+ *\ -l* | *\ -L*)
+ func_warning "\`-l' and \`-L' are ignored for objects" ;;
+ esac
+
+ test -n "$rpath" && \
+ func_warning "\`-rpath' is ignored for objects"
+
+ test -n "$xrpath" && \
+ func_warning "\`-R' is ignored for objects"
+
+ test -n "$vinfo" && \
+ func_warning "\`-version-info' is ignored for objects"
+
+ test -n "$release" && \
+ func_warning "\`-release' is ignored for objects"
+
+ case $output in
+ *.lo)
+ test -n "$objs$old_deplibs" && \
+ func_fatal_error "cannot build library object \`$output' from non-libtool objects"
+
+ libobj=$output
+ func_lo2o "$libobj"
+ obj=$func_lo2o_result
+ ;;
+ *)
+ libobj=
+ obj="$output"
+ ;;
+ esac
+
+ # Delete the old objects.
+ $opt_dry_run || $RM $obj $libobj
+
+ # Objects from convenience libraries. This assumes
+ # single-version convenience libraries. Whenever we create
+ # different ones for PIC/non-PIC, this we'll have to duplicate
+ # the extraction.
+ reload_conv_objs=
+ gentop=
+ # reload_cmds runs $LD directly, so let us get rid of
+ # -Wl from whole_archive_flag_spec and hope we can get by with
+ # turning comma into space..
+ wl=
+
+ if test -n "$convenience"; then
+ if test -n "$whole_archive_flag_spec"; then
+ eval tmp_whole_archive_flags=\"$whole_archive_flag_spec\"
+ reload_conv_objs=$reload_objs\ `$ECHO "X$tmp_whole_archive_flags" | $Xsed -e 's|,| |g'`
+ else
+ gentop="$output_objdir/${obj}x"
+ generated="$generated $gentop"
+
+ func_extract_archives $gentop $convenience
+ reload_conv_objs="$reload_objs $func_extract_archives_result"
+ fi
+ fi
+
+ # Create the old-style object.
+ reload_objs="$objs$old_deplibs "`$ECHO "X$libobjs" | $SP2NL | $Xsed -e '/\.'${libext}$'/d' -e '/\.lib$/d' -e "$lo2o" | $NL2SP`" $reload_conv_objs" ### testsuite: skip nested quoting test
+
+ output="$obj"
+ func_execute_cmds "$reload_cmds" 'exit $?'
+
+ # Exit if we aren't doing a library object file.
+ if test -z "$libobj"; then
+ if test -n "$gentop"; then
+ func_show_eval '${RM}r "$gentop"'
+ fi
+
+ exit $EXIT_SUCCESS
+ fi
+
+ if test "$build_libtool_libs" != yes; then
+ if test -n "$gentop"; then
+ func_show_eval '${RM}r "$gentop"'
+ fi
+
+ # Create an invalid libtool object if no PIC, so that we don't
+ # accidentally link it into a program.
+ # $show "echo timestamp > $libobj"
+ # $opt_dry_run || eval "echo timestamp > $libobj" || exit $?
+ exit $EXIT_SUCCESS
+ fi
+
+ if test -n "$pic_flag" || test "$pic_mode" != default; then
+ # Only do commands if we really have different PIC objects.
+ reload_objs="$libobjs $reload_conv_objs"
+ output="$libobj"
+ func_execute_cmds "$reload_cmds" 'exit $?'
+ fi
+
+ if test -n "$gentop"; then
+ func_show_eval '${RM}r "$gentop"'
+ fi
+
+ exit $EXIT_SUCCESS
+ ;;
+
+ prog)
+ case $host in
+ *cygwin*) func_stripname '' '.exe' "$output"
+ output=$func_stripname_result.exe;;
+ esac
+ test -n "$vinfo" && \
+ func_warning "\`-version-info' is ignored for programs"
+
+ test -n "$release" && \
+ func_warning "\`-release' is ignored for programs"
+
+ test "$preload" = yes \
+ && test "$dlopen_support" = unknown \
+ && test "$dlopen_self" = unknown \
+ && test "$dlopen_self_static" = unknown && \
+ func_warning "\`LT_INIT([dlopen])' not used. Assuming no dlopen support."
+
+ case $host in
+ *-*-rhapsody* | *-*-darwin1.[012])
+ # On Rhapsody replace the C library is the System framework
+ compile_deplibs=`$ECHO "X $compile_deplibs" | $Xsed -e 's/ -lc / System.ltframework /'`
+ finalize_deplibs=`$ECHO "X $finalize_deplibs" | $Xsed -e 's/ -lc / System.ltframework /'`
+ ;;
+ esac
+
+ case $host in
+ *-*-darwin*)
+ # Don't allow lazy linking, it breaks C++ global constructors
+ # But is supposedly fixed on 10.4 or later (yay!).
+ if test "$tagname" = CXX ; then
+ case ${MACOSX_DEPLOYMENT_TARGET-10.0} in
+ 10.[0123])
+ compile_command="$compile_command ${wl}-bind_at_load"
+ finalize_command="$finalize_command ${wl}-bind_at_load"
+ ;;
+ esac
+ fi
+ # Time to change all our "foo.ltframework" stuff back to "-framework foo"
+ compile_deplibs=`$ECHO "X $compile_deplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
+ finalize_deplibs=`$ECHO "X $finalize_deplibs" | $Xsed -e 's% \([^ $]*\).ltframework% -framework \1%g'`
+ ;;
+ esac
+
+
+ # move library search paths that coincide with paths to not yet
+ # installed libraries to the beginning of the library search list
+ new_libs=
+ for path in $notinst_path; do
+ case " $new_libs " in
+ *" -L$path/$objdir "*) ;;
+ *)
+ case " $compile_deplibs " in
+ *" -L$path/$objdir "*)
+ new_libs="$new_libs -L$path/$objdir" ;;
+ esac
+ ;;
+ esac
+ done
+ for deplib in $compile_deplibs; do
+ case $deplib in
+ -L*)
+ case " $new_libs " in
+ *" $deplib "*) ;;
+ *) new_libs="$new_libs $deplib" ;;
+ esac
+ ;;
+ *) new_libs="$new_libs $deplib" ;;
+ esac
+ done
+ compile_deplibs="$new_libs"
+
+
+ compile_command="$compile_command $compile_deplibs"
+ finalize_command="$finalize_command $finalize_deplibs"
+
+ if test -n "$rpath$xrpath"; then
+ # If the user specified any rpath flags, then add them.
+ for libdir in $rpath $xrpath; do
+ # This is the magic to use -rpath.
+ case "$finalize_rpath " in
+ *" $libdir "*) ;;
+ *) finalize_rpath="$finalize_rpath $libdir" ;;
+ esac
+ done
+ fi
+
+ # Now hardcode the library paths
+ rpath=
+ hardcode_libdirs=
+ for libdir in $compile_rpath $finalize_rpath; do
+ if test -n "$hardcode_libdir_flag_spec"; then
+ if test -n "$hardcode_libdir_separator"; then
+ if test -z "$hardcode_libdirs"; then
+ hardcode_libdirs="$libdir"
+ else
+ # Just accumulate the unique libdirs.
+ case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in
+ *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*)
+ ;;
+ *)
+ hardcode_libdirs="$hardcode_libdirs$hardcode_libdir_separator$libdir"
+ ;;
+ esac
+ fi
+ else
+ eval flag=\"$hardcode_libdir_flag_spec\"
+ rpath="$rpath $flag"
+ fi
+ elif test -n "$runpath_var"; then
+ case "$perm_rpath " in
+ *" $libdir "*) ;;
+ *) perm_rpath="$perm_rpath $libdir" ;;
+ esac
+ fi
+ case $host in
+ *-*-cygwin* | *-*-mingw* | *-*-pw32* | *-*-os2* | *-cegcc*)
+ testbindir=`${ECHO} "$libdir" | ${SED} -e 's*/lib$*/bin*'`
+ case :$dllsearchpath: in
+ *":$libdir:"*) ;;
+ ::) dllsearchpath=$libdir;;
+ *) dllsearchpath="$dllsearchpath:$libdir";;
+ esac
+ case :$dllsearchpath: in
+ *":$testbindir:"*) ;;
+ ::) dllsearchpath=$testbindir;;
+ *) dllsearchpath="$dllsearchpath:$testbindir";;
+ esac
+ ;;
+ esac
+ done
+ # Substitute the hardcoded libdirs into the rpath.
+ if test -n "$hardcode_libdir_separator" &&
+ test -n "$hardcode_libdirs"; then
+ libdir="$hardcode_libdirs"
+ eval rpath=\" $hardcode_libdir_flag_spec\"
+ fi
+ compile_rpath="$rpath"
+
+ rpath=
+ hardcode_libdirs=
+ for libdir in $finalize_rpath; do
+ if test -n "$hardcode_libdir_flag_spec"; then
+ if test -n "$hardcode_libdir_separator"; then
+ if test -z "$hardcode_libdirs"; then
+ hardcode_libdirs="$libdir"
+ else
+ # Just accumulate the unique libdirs.
+ case $hardcode_libdir_separator$hardcode_libdirs$hardcode_libdir_separator in
+ *"$hardcode_libdir_separator$libdir$hardcode_libdir_separator"*)
+ ;;
+ *)
+ hardcode_libdirs="$hardcode_libdirs$hardcode_libdir_separator$libdir"
+ ;;
+ esac
+ fi
+ else
+ eval flag=\"$hardcode_libdir_flag_spec\"
+ rpath="$rpath $flag"
+ fi
+ elif test -n "$runpath_var"; then
+ case "$finalize_perm_rpath " in
+ *" $libdir "*) ;;
+ *) finalize_perm_rpath="$finalize_perm_rpath $libdir" ;;
+ esac
+ fi
+ done
+ # Substitute the hardcoded libdirs into the rpath.
+ if test -n "$hardcode_libdir_separator" &&
+ test -n "$hardcode_libdirs"; then
+ libdir="$hardcode_libdirs"
+ eval rpath=\" $hardcode_libdir_flag_spec\"
+ fi
+ finalize_rpath="$rpath"
+
+ if test -n "$libobjs" && test "$build_old_libs" = yes; then
+ # Transform all the library objects into standard objects.
+ compile_command=`$ECHO "X$compile_command" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
+ finalize_command=`$ECHO "X$finalize_command" | $SP2NL | $Xsed -e "$lo2o" | $NL2SP`
+ fi
+
+ func_generate_dlsyms "$outputname" "@PROGRAM@" "no"
+
+ # template prelinking step
+ if test -n "$prelink_cmds"; then
+ func_execute_cmds "$prelink_cmds" 'exit $?'
+ fi
+
+ wrappers_required=yes
+ case $host in
+ *cygwin* | *mingw* )
+ if test "$build_libtool_libs" != yes; then
+ wrappers_required=no
+ fi
+ ;;
+ *cegcc)
+ # Disable wrappers for cegcc, we are cross compiling anyway.
+ wrappers_required=no
+ ;;
+ *)
+ if test "$need_relink" = no || test "$build_libtool_libs" != yes; then
+ wrappers_required=no
+ fi
+ ;;
+ esac
+ if test "$wrappers_required" = no; then
+ # Replace the output file specification.
+ compile_command=`$ECHO "X$compile_command" | $Xsed -e 's%@OUTPUT@%'"$output"'%g'`
+ link_command="$compile_command$compile_rpath"
+
+ # We have no uninstalled library dependencies, so finalize right now.
+ exit_status=0
+ func_show_eval "$link_command" 'exit_status=$?'
+
+ # Delete the generated files.
+ if test -f "$output_objdir/${outputname}S.${objext}"; then
+ func_show_eval '$RM "$output_objdir/${outputname}S.${objext}"'
+ fi
+
+ exit $exit_status
+ fi
+
+ if test -n "$compile_shlibpath$finalize_shlibpath"; then
+ compile_command="$shlibpath_var=\"$compile_shlibpath$finalize_shlibpath\$$shlibpath_var\" $compile_command"
+ fi
+ if test -n "$finalize_shlibpath"; then
+ finalize_command="$shlibpath_var=\"$finalize_shlibpath\$$shlibpath_var\" $finalize_command"
+ fi
+
+ compile_var=
+ finalize_var=
+ if test -n "$runpath_var"; then
+ if test -n "$perm_rpath"; then
+ # We should set the runpath_var.
+ rpath=
+ for dir in $perm_rpath; do
+ rpath="$rpath$dir:"
+ done
+ compile_var="$runpath_var=\"$rpath\$$runpath_var\" "
+ fi
+ if test -n "$finalize_perm_rpath"; then
+ # We should set the runpath_var.
+ rpath=
+ for dir in $finalize_perm_rpath; do
+ rpath="$rpath$dir:"
+ done
+ finalize_var="$runpath_var=\"$rpath\$$runpath_var\" "
+ fi
+ fi
+
+ if test "$no_install" = yes; then
+ # We don't need to create a wrapper script.
+ link_command="$compile_var$compile_command$compile_rpath"
+ # Replace the output file specification.
+ link_command=`$ECHO "X$link_command" | $Xsed -e 's%@OUTPUT@%'"$output"'%g'`
+ # Delete the old output file.
+ $opt_dry_run || $RM $output
+ # Link the executable and exit
+ func_show_eval "$link_command" 'exit $?'
+ exit $EXIT_SUCCESS
+ fi
+
+ if test "$hardcode_action" = relink; then
+ # Fast installation is not supported
+ link_command="$compile_var$compile_command$compile_rpath"
+ relink_command="$finalize_var$finalize_command$finalize_rpath"
+
+ func_warning "this platform does not like uninstalled shared libraries"
+ func_warning "\`$output' will be relinked during installation"
+ else
+ if test "$fast_install" != no; then
+ link_command="$finalize_var$compile_command$finalize_rpath"
+ if test "$fast_install" = yes; then
+ relink_command=`$ECHO "X$compile_var$compile_command$compile_rpath" | $Xsed -e 's%@OUTPUT@%\$progdir/\$file%g'`
+ else
+ # fast_install is set to needless
+ relink_command=
+ fi
+ else
+ link_command="$compile_var$compile_command$compile_rpath"
+ relink_command="$finalize_var$finalize_command$finalize_rpath"
+ fi
+ fi
+
+ # Replace the output file specification.
+ link_command=`$ECHO "X$link_command" | $Xsed -e 's%@OUTPUT@%'"$output_objdir/$outputname"'%g'`
+
+ # Delete the old output files.
+ $opt_dry_run || $RM $output $output_objdir/$outputname $output_objdir/lt-$outputname
+
+ func_show_eval "$link_command" 'exit $?'
+
+ # Now create the wrapper script.
+ func_verbose "creating $output"
+
+ # Quote the relink command for shipping.
+ if test -n "$relink_command"; then
+ # Preserve any variables that may affect compiler behavior
+ for var in $variables_saved_for_relink; do
+ if eval test -z \"\${$var+set}\"; then
+ relink_command="{ test -z \"\${$var+set}\" || $lt_unset $var || { $var=; export $var; }; }; $relink_command"
+ elif eval var_value=\$$var; test -z "$var_value"; then
+ relink_command="$var=; export $var; $relink_command"
+ else
+ func_quote_for_eval "$var_value"
+ relink_command="$var=$func_quote_for_eval_result; export $var; $relink_command"
+ fi
+ done
+ relink_command="(cd `pwd`; $relink_command)"
+ relink_command=`$ECHO "X$relink_command" | $Xsed -e "$sed_quote_subst"`
+ fi
+
+ # Quote $ECHO for shipping.
+ if test "X$ECHO" = "X$SHELL $progpath --fallback-echo"; then
+ case $progpath in
+ [\\/]* | [A-Za-z]:[\\/]*) qecho="$SHELL $progpath --fallback-echo";;
+ *) qecho="$SHELL `pwd`/$progpath --fallback-echo";;
+ esac
+ qecho=`$ECHO "X$qecho" | $Xsed -e "$sed_quote_subst"`
+ else
+ qecho=`$ECHO "X$ECHO" | $Xsed -e "$sed_quote_subst"`
+ fi
+
+ # Only actually do things if not in dry run mode.
+ $opt_dry_run || {
+ # win32 will think the script is a binary if it has
+ # a .exe suffix, so we strip it off here.
+ case $output in
+ *.exe) func_stripname '' '.exe' "$output"
+ output=$func_stripname_result ;;
+ esac
+ # test for cygwin because mv fails w/o .exe extensions
+ case $host in
+ *cygwin*)
+ exeext=.exe
+ func_stripname '' '.exe' "$outputname"
+ outputname=$func_stripname_result ;;
+ *) exeext= ;;
+ esac
+ case $host in
+ *cygwin* | *mingw* )
+ func_dirname_and_basename "$output" "" "."
+ output_name=$func_basename_result
+ output_path=$func_dirname_result
+ cwrappersource="$output_path/$objdir/lt-$output_name.c"
+ cwrapper="$output_path/$output_name.exe"
+ $RM $cwrappersource $cwrapper
+ trap "$RM $cwrappersource $cwrapper; exit $EXIT_FAILURE" 1 2 15
+
+ func_emit_cwrapperexe_src > $cwrappersource
+
+ # The wrapper executable is built using the $host compiler,
+ # because it contains $host paths and files. If cross-
+ # compiling, it, like the target executable, must be
+ # executed on the $host or under an emulation environment.
+ $opt_dry_run || {
+ $LTCC $LTCFLAGS -o $cwrapper $cwrappersource
+ $STRIP $cwrapper
+ }
+
+ # Now, create the wrapper script for func_source use:
+ func_ltwrapper_scriptname $cwrapper
+ $RM $func_ltwrapper_scriptname_result
+ trap "$RM $func_ltwrapper_scriptname_result; exit $EXIT_FAILURE" 1 2 15
+ $opt_dry_run || {
+ # note: this script will not be executed, so do not chmod.
+ if test "x$build" = "x$host" ; then
+ $cwrapper --lt-dump-script > $func_ltwrapper_scriptname_result
+ else
+ func_emit_wrapper no > $func_ltwrapper_scriptname_result
+ fi
+ }
+ ;;
+ * )
+ $RM $output
+ trap "$RM $output; exit $EXIT_FAILURE" 1 2 15
+
+ func_emit_wrapper no > $output
+ chmod +x $output
+ ;;
+ esac
+ }
+ exit $EXIT_SUCCESS
+ ;;
+ esac
+
+ # See if we need to build an old-fashioned archive.
+ for oldlib in $oldlibs; do
+
+ if test "$build_libtool_libs" = convenience; then
+ oldobjs="$libobjs_save $symfileobj"
+ addlibs="$convenience"
+ build_libtool_libs=no
+ else
+ if test "$build_libtool_libs" = module; then
+ oldobjs="$libobjs_save"
+ build_libtool_libs=no
+ else
+ oldobjs="$old_deplibs $non_pic_objects"
+ if test "$preload" = yes && test -f "$symfileobj"; then
+ oldobjs="$oldobjs $symfileobj"
+ fi
+ fi
+ addlibs="$old_convenience"
+ fi
+
+ if test -n "$addlibs"; then
+ gentop="$output_objdir/${outputname}x"
+ generated="$generated $gentop"
+
+ func_extract_archives $gentop $addlibs
+ oldobjs="$oldobjs $func_extract_archives_result"
+ fi
+
+ # Do each command in the archive commands.
+ if test -n "$old_archive_from_new_cmds" && test "$build_libtool_libs" = yes; then
+ cmds=$old_archive_from_new_cmds
+ else
+
+ # Add any objects from preloaded convenience libraries
+ if test -n "$dlprefiles"; then
+ gentop="$output_objdir/${outputname}x"
+ generated="$generated $gentop"
+
+ func_extract_archives $gentop $dlprefiles
+ oldobjs="$oldobjs $func_extract_archives_result"
+ fi
+
+ # POSIX demands no paths to be encoded in archives. We have
+ # to avoid creating archives with duplicate basenames if we
+ # might have to extract them afterwards, e.g., when creating a
+ # static archive out of a convenience library, or when linking
+ # the entirety of a libtool archive into another (currently
+ # not supported by libtool).
+ if (for obj in $oldobjs
+ do
+ func_basename "$obj"
+ $ECHO "$func_basename_result"
+ done | sort | sort -uc >/dev/null 2>&1); then
+ :
+ else
+ $ECHO "copying selected object files to avoid basename conflicts..."
+ gentop="$output_objdir/${outputname}x"
+ generated="$generated $gentop"
+ func_mkdir_p "$gentop"
+ save_oldobjs=$oldobjs
+ oldobjs=
+ counter=1
+ for obj in $save_oldobjs
+ do
+ func_basename "$obj"
+ objbase="$func_basename_result"
+ case " $oldobjs " in
+ " ") oldobjs=$obj ;;
+ *[\ /]"$objbase "*)
+ while :; do
+ # Make sure we don't pick an alternate name that also
+ # overlaps.
+ newobj=lt$counter-$objbase
+ func_arith $counter + 1
+ counter=$func_arith_result
+ case " $oldobjs " in
+ *[\ /]"$newobj "*) ;;
+ *) if test ! -f "$gentop/$newobj"; then break; fi ;;
+ esac
+ done
+ func_show_eval "ln $obj $gentop/$newobj || cp $obj $gentop/$newobj"
+ oldobjs="$oldobjs $gentop/$newobj"
+ ;;
+ *) oldobjs="$oldobjs $obj" ;;
+ esac
+ done
+ fi
+ eval cmds=\"$old_archive_cmds\"
+
+ func_len " $cmds"
+ len=$func_len_result
+ if test "$len" -lt "$max_cmd_len" || test "$max_cmd_len" -le -1; then
+ cmds=$old_archive_cmds
+ else
+ # the command line is too long to link in one step, link in parts
+ func_verbose "using piecewise archive linking..."
+ save_RANLIB=$RANLIB
+ RANLIB=:
+ objlist=
+ concat_cmds=
+ save_oldobjs=$oldobjs
+ oldobjs=
+ # Is there a better way of finding the last object in the list?
+ for obj in $save_oldobjs
+ do
+ last_oldobj=$obj
+ done
+ eval test_cmds=\"$old_archive_cmds\"
+ func_len " $test_cmds"
+ len0=$func_len_result
+ len=$len0
+ for obj in $save_oldobjs
+ do
+ func_len " $obj"
+ func_arith $len + $func_len_result
+ len=$func_arith_result
+ func_append objlist " $obj"
+ if test "$len" -lt "$max_cmd_len"; then
+ :
+ else
+ # the above command should be used before it gets too long
+ oldobjs=$objlist
+ if test "$obj" = "$last_oldobj" ; then
+ RANLIB=$save_RANLIB
+ fi
+ test -z "$concat_cmds" || concat_cmds=$concat_cmds~
+ eval concat_cmds=\"\${concat_cmds}$old_archive_cmds\"
+ objlist=
+ len=$len0
+ fi
+ done
+ RANLIB=$save_RANLIB
+ oldobjs=$objlist
+ if test "X$oldobjs" = "X" ; then
+ eval cmds=\"\$concat_cmds\"
+ else
+ eval cmds=\"\$concat_cmds~\$old_archive_cmds\"
+ fi
+ fi
+ fi
+ func_execute_cmds "$cmds" 'exit $?'
+ done
+
+ test -n "$generated" && \
+ func_show_eval "${RM}r$generated"
+
+ # Now create the libtool archive.
+ case $output in
+ *.la)
+ old_library=
+ test "$build_old_libs" = yes && old_library="$libname.$libext"
+ func_verbose "creating $output"
+
+ # Preserve any variables that may affect compiler behavior
+ for var in $variables_saved_for_relink; do
+ if eval test -z \"\${$var+set}\"; then
+ relink_command="{ test -z \"\${$var+set}\" || $lt_unset $var || { $var=; export $var; }; }; $relink_command"
+ elif eval var_value=\$$var; test -z "$var_value"; then
+ relink_command="$var=; export $var; $relink_command"
+ else
+ func_quote_for_eval "$var_value"
+ relink_command="$var=$func_quote_for_eval_result; export $var; $relink_command"
+ fi
+ done
+ # Quote the link command for shipping.
+ relink_command="(cd `pwd`; $SHELL $progpath $preserve_args --mode=relink $libtool_args @inst_prefix_dir@)"
+ relink_command=`$ECHO "X$relink_command" | $Xsed -e "$sed_quote_subst"`
+ if test "$hardcode_automatic" = yes ; then
+ relink_command=
+ fi
+
+ # Only create the output if not a dry run.
+ $opt_dry_run || {
+ for installed in no yes; do
+ if test "$installed" = yes; then
+ if test -z "$install_libdir"; then
+ break
+ fi
+ output="$output_objdir/$outputname"i
+ # Replace all uninstalled libtool libraries with the installed ones
+ newdependency_libs=
+ for deplib in $dependency_libs; do
+ case $deplib in
+ *.la)
+ func_basename "$deplib"
+ name="$func_basename_result"
+ eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $deplib`
+ test -z "$libdir" && \
+ func_fatal_error "\`$deplib' is not a valid libtool archive"
+ newdependency_libs="$newdependency_libs $libdir/$name"
+ ;;
+ *) newdependency_libs="$newdependency_libs $deplib" ;;
+ esac
+ done
+ dependency_libs="$newdependency_libs"
+ newdlfiles=
+
+ for lib in $dlfiles; do
+ case $lib in
+ *.la)
+ func_basename "$lib"
+ name="$func_basename_result"
+ eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib`
+ test -z "$libdir" && \
+ func_fatal_error "\`$lib' is not a valid libtool archive"
+ newdlfiles="$newdlfiles $libdir/$name"
+ ;;
+ *) newdlfiles="$newdlfiles $lib" ;;
+ esac
+ done
+ dlfiles="$newdlfiles"
+ newdlprefiles=
+ for lib in $dlprefiles; do
+ case $lib in
+ *.la)
+ # Only pass preopened files to the pseudo-archive (for
+ # eventual linking with the app. that links it) if we
+ # didn't already link the preopened objects directly into
+ # the library:
+ func_basename "$lib"
+ name="$func_basename_result"
+ eval libdir=`${SED} -n -e 's/^libdir=\(.*\)$/\1/p' $lib`
+ test -z "$libdir" && \
+ func_fatal_error "\`$lib' is not a valid libtool archive"
+ newdlprefiles="$newdlprefiles $libdir/$name"
+ ;;
+ esac
+ done
+ dlprefiles="$newdlprefiles"
+ else
+ newdlfiles=
+ for lib in $dlfiles; do
+ case $lib in
+ [\\/]* | [A-Za-z]:[\\/]*) abs="$lib" ;;
+ *) abs=`pwd`"/$lib" ;;
+ esac
+ newdlfiles="$newdlfiles $abs"
+ done
+ dlfiles="$newdlfiles"
+ newdlprefiles=
+ for lib in $dlprefiles; do
+ case $lib in
+ [\\/]* | [A-Za-z]:[\\/]*) abs="$lib" ;;
+ *) abs=`pwd`"/$lib" ;;
+ esac
+ newdlprefiles="$newdlprefiles $abs"
+ done
+ dlprefiles="$newdlprefiles"
+ fi
+ $RM $output
+ # place dlname in correct position for cygwin
+ tdlname=$dlname
+ case $host,$output,$installed,$module,$dlname in
+ *cygwin*,*lai,yes,no,*.dll | *mingw*,*lai,yes,no,*.dll | *cegcc*,*lai,yes,no,*.dll) tdlname=../bin/$dlname ;;
+ esac
+ $ECHO > $output "\
+# $outputname - a libtool library file
+# Generated by $PROGRAM (GNU $PACKAGE$TIMESTAMP) $VERSION
+#
+# Please DO NOT delete this file!
+# It is necessary for linking the library.
+
+# The name that we can dlopen(3).
+dlname='$tdlname'
+
+# Names of this library.
+library_names='$library_names'
+
+# The name of the static archive.
+old_library='$old_library'
+
+# Linker flags that can not go in dependency_libs.
+inherited_linker_flags='$new_inherited_linker_flags'
+
+# Libraries that this one depends upon.
+dependency_libs='$dependency_libs'
+
+# Names of additional weak libraries provided by this library
+weak_library_names='$weak_libs'
+
+# Version information for $libname.
+current=$current
+age=$age
+revision=$revision
+
+# Is this an already installed library?
+installed=$installed
+
+# Should we warn about portability when linking against -modules?
+shouldnotlink=$module
+
+# Files to dlopen/dlpreopen
+dlopen='$dlfiles'
+dlpreopen='$dlprefiles'
+
+# Directory that this library needs to be installed in:
+libdir='$install_libdir'"
+ if test "$installed" = no && test "$need_relink" = yes; then
+ $ECHO >> $output "\
+relink_command=\"$relink_command\""
+ fi
+ done
+ }
+
+ # Do a symbolic link so that the libtool archive can be found in
+ # LD_LIBRARY_PATH before the program is installed.
+ func_show_eval '( cd "$output_objdir" && $RM "$outputname" && $LN_S "../$outputname" "$outputname" )' 'exit $?'
+ ;;
+ esac
+ exit $EXIT_SUCCESS
+}
+
+{ test "$mode" = link || test "$mode" = relink; } &&
+ func_mode_link ${1+"$@"}
+
+
+# func_mode_uninstall arg...
+func_mode_uninstall ()
+{
+ $opt_debug
+ RM="$nonopt"
+ files=
+ rmforce=
+ exit_status=0
+
+ # This variable tells wrapper scripts just to set variables rather
+ # than running their programs.
+ libtool_install_magic="$magic"
+
+ for arg
+ do
+ case $arg in
+ -f) RM="$RM $arg"; rmforce=yes ;;
+ -*) RM="$RM $arg" ;;
+ *) files="$files $arg" ;;
+ esac
+ done
+
+ test -z "$RM" && \
+ func_fatal_help "you must specify an RM program"
+
+ rmdirs=
+
+ origobjdir="$objdir"
+ for file in $files; do
+ func_dirname "$file" "" "."
+ dir="$func_dirname_result"
+ if test "X$dir" = X.; then
+ objdir="$origobjdir"
+ else
+ objdir="$dir/$origobjdir"
+ fi
+ func_basename "$file"
+ name="$func_basename_result"
+ test "$mode" = uninstall && objdir="$dir"
+
+ # Remember objdir for removal later, being careful to avoid duplicates
+ if test "$mode" = clean; then
+ case " $rmdirs " in
+ *" $objdir "*) ;;
+ *) rmdirs="$rmdirs $objdir" ;;
+ esac
+ fi
+
+ # Don't error if the file doesn't exist and rm -f was used.
+ if { test -L "$file"; } >/dev/null 2>&1 ||
+ { test -h "$file"; } >/dev/null 2>&1 ||
+ test -f "$file"; then
+ :
+ elif test -d "$file"; then
+ exit_status=1
+ continue
+ elif test "$rmforce" = yes; then
+ continue
+ fi
+
+ rmfiles="$file"
+
+ case $name in
+ *.la)
+ # Possibly a libtool archive, so verify it.
+ if func_lalib_p "$file"; then
+ func_source $dir/$name
+
+ # Delete the libtool libraries and symlinks.
+ for n in $library_names; do
+ rmfiles="$rmfiles $objdir/$n"
+ done
+ test -n "$old_library" && rmfiles="$rmfiles $objdir/$old_library"
+
+ case "$mode" in
+ clean)
+ case " $library_names " in
+ # " " in the beginning catches empty $dlname
+ *" $dlname "*) ;;
+ *) rmfiles="$rmfiles $objdir/$dlname" ;;
+ esac
+ test -n "$libdir" && rmfiles="$rmfiles $objdir/$name $objdir/${name}i"
+ ;;
+ uninstall)
+ if test -n "$library_names"; then
+ # Do each command in the postuninstall commands.
+ func_execute_cmds "$postuninstall_cmds" 'test "$rmforce" = yes || exit_status=1'
+ fi
+
+ if test -n "$old_library"; then
+ # Do each command in the old_postuninstall commands.
+ func_execute_cmds "$old_postuninstall_cmds" 'test "$rmforce" = yes || exit_status=1'
+ fi
+ # FIXME: should reinstall the best remaining shared library.
+ ;;
+ esac
+ fi
+ ;;
+
+ *.lo)
+ # Possibly a libtool object, so verify it.
+ if func_lalib_p "$file"; then
+
+ # Read the .lo file
+ func_source $dir/$name
+
+ # Add PIC object to the list of files to remove.
+ if test -n "$pic_object" &&
+ test "$pic_object" != none; then
+ rmfiles="$rmfiles $dir/$pic_object"
+ fi
+
+ # Add non-PIC object to the list of files to remove.
+ if test -n "$non_pic_object" &&
+ test "$non_pic_object" != none; then
+ rmfiles="$rmfiles $dir/$non_pic_object"
+ fi
+ fi
+ ;;
+
+ *)
+ if test "$mode" = clean ; then
+ noexename=$name
+ case $file in
+ *.exe)
+ func_stripname '' '.exe' "$file"
+ file=$func_stripname_result
+ func_stripname '' '.exe' "$name"
+ noexename=$func_stripname_result
+ # $file with .exe has already been added to rmfiles,
+ # add $file without .exe
+ rmfiles="$rmfiles $file"
+ ;;
+ esac
+ # Do a test to see if this is a libtool program.
+ if func_ltwrapper_p "$file"; then
+ if func_ltwrapper_executable_p "$file"; then
+ func_ltwrapper_scriptname "$file"
+ relink_command=
+ func_source $func_ltwrapper_scriptname_result
+ rmfiles="$rmfiles $func_ltwrapper_scriptname_result"
+ else
+ relink_command=
+ func_source $dir/$noexename
+ fi
+
+ # note $name still contains .exe if it was in $file originally
+ # as does the version of $file that was added into $rmfiles
+ rmfiles="$rmfiles $objdir/$name $objdir/${name}S.${objext}"
+ if test "$fast_install" = yes && test -n "$relink_command"; then
+ rmfiles="$rmfiles $objdir/lt-$name"
+ fi
+ if test "X$noexename" != "X$name" ; then
+ rmfiles="$rmfiles $objdir/lt-${noexename}.c"
+ fi
+ fi
+ fi
+ ;;
+ esac
+ func_show_eval "$RM $rmfiles" 'exit_status=1'
+ done
+ objdir="$origobjdir"
+
+ # Try to remove the ${objdir}s in the directories where we deleted files
+ for dir in $rmdirs; do
+ if test -d "$dir"; then
+ func_show_eval "rmdir $dir >/dev/null 2>&1"
+ fi
+ done
+
+ exit $exit_status
+}
+
+{ test "$mode" = uninstall || test "$mode" = clean; } &&
+ func_mode_uninstall ${1+"$@"}
+
+test -z "$mode" && {
+ help="$generic_help"
+ func_fatal_help "you must specify a MODE"
+}
+
+test -z "$exec_cmd" && \
+ func_fatal_help "invalid operation mode \`$mode'"
+
+if test -n "$exec_cmd"; then
+ eval exec "$exec_cmd"
+ exit $EXIT_FAILURE
+fi
+
+exit $exit_status
+
+
+# The TAGs below are defined such that we never get into a situation
+# in which we disable both kinds of libraries. Given conflicting
+# choices, we go for a static library, that is the most portable,
+# since we can't tell whether shared libraries were disabled because
+# the user asked for that or because the platform doesn't support
+# them. This is particularly important on AIX, because we don't
+# support having both static and shared libraries enabled at the same
+# time on that platform, so we default to a shared-only configuration.
+# If a disable-shared tag is given, we'll fallback to a static-only
+# configuration. But we'll never go from static-only to shared-only.
+
+# ### BEGIN LIBTOOL TAG CONFIG: disable-shared
+build_libtool_libs=no
+build_old_libs=yes
+# ### END LIBTOOL TAG CONFIG: disable-shared
+
+# ### BEGIN LIBTOOL TAG CONFIG: disable-static
+build_old_libs=`case $build_libtool_libs in yes) echo no;; *) echo yes;; esac`
+# ### END LIBTOOL TAG CONFIG: disable-static
+
+# Local Variables:
+# mode:shell-script
+# sh-indentation:2
+# End:
+# vi:sw=2
+
diff --git a/main.cpp b/main.cpp
new file mode 100644
index 0000000..0baa062
--- /dev/null
+++ b/main.cpp
@@ -0,0 +1,1313 @@
+/***************************************************************
+ * wasp - Genome Association Study Pipeline
+ * Written by: Justin Giles
+ * Vanderbilt University
+ * Center for Human Genetics Research
+ *
+ *wasp.cc - Main class for wasp application
+ *
+ * See README file for complete overview.
+ ***************************************************************/
+
+#include "main.h"
+
+#include <iostream>
+#include <iomanip>
+#include <string>
+#include <vector>
+#include <list>
+#include <deque>
+#include <utility>
+#include <map>
+
+#include <boost/program_options.hpp>
+#include <boost/algorithm/string.hpp>
+//#include <boost/thread.hpp>
+#include <boost/ref.hpp>
+#include <boost/bind.hpp>
+
+#include "ProcessFactory.h"
+#include "MPIProcessFactory.h"
+#include "Process.h"
+
+#include "util/InputManager.h"
+#include "util/CommandLineParser.h"
+#include "util/MPIUtils.h"
+#include "data/DataSet.h"
+#include "util/Logger.h"
+
+#include "config.h"
+
+#ifdef HAVE_CXX_MPI
+#include <mpi.h>
+#endif
+
+namespace po = boost::program_options;
+
+using std::cout;
+using std::cerr;
+using std::string;
+using std::vector;
+using std::deque;
+using std::pair;
+using std::map;
+
+using PLATO::Data::DataSet;
+using PLATO::Utility::InputManager;
+using PLATO::Utility::CommandLineParser;
+using PLATO::Utility::Logger;
+
+using PLATO::Process;
+using PLATO::ProcessFactory;
+using PLATO::MPIProcessFactory;
+
+void MPISendResponses(map<int, deque<pair<unsigned int, const char*> > >& resp_queue_map, boost::mutex& resp_mutex){
+
+
+ for( map<int, deque<pair<unsigned int, const char*> > >::iterator rq_itr = resp_queue_map.begin();
+ rq_itr != resp_queue_map.end(); rq_itr++){
+
+ deque<pair<unsigned int, const char*> >& resp_queue = (*rq_itr).second;
+
+ while(resp_queue.size() > 0){
+ resp_mutex.lock();
+
+ pair<unsigned int, const char*> response = resp_queue.front();
+ resp_queue.pop_front();
+ resp_mutex.unlock();
+
+ // only send a response if we NEED to!
+ if(response.second){
+#ifdef HAVE_CXX_MPI
+ MPI_Send(const_cast<char*>(response.second), response.first, MPI_CHAR, 0, (*rq_itr).first, MPI_COMM_WORLD);
+#endif
+ delete[] response.second;
+ }
+
+ }
+ }
+}
+
+void MPIProbeInput(map<int, deque<pair<unsigned int, const char*> > >& resp_queue_map, boost::mutex& resp_mutex, bool& running){
+
+ running = true;
+
+#ifdef HAVE_CXX_MPI
+ MPI_Status m_stat;
+ int bufsz;
+ char* buf;
+ while(true){
+ MPI_Probe(0, MPI_ANY_TAG, MPI_COMM_WORLD, &m_stat);
+
+ // If we get a 0 tag, break out of the receive loop
+ if(m_stat.MPI_TAG == 0){
+ // wait on the threads (i.e., send the special "wait until done" message
+ for( map<int, deque<pair<unsigned int, const char*> > >::iterator rq_itr = resp_queue_map.begin();
+ rq_itr != resp_queue_map.end(); rq_itr++){
+ MPIProcessFactory::getFactory().calculate((*rq_itr).first, 0, 0, (*rq_itr).second, resp_mutex);
+ }
+ break;
+ }
+ deque<pair<unsigned int, const char*> >& resp_queue = resp_queue_map[m_stat.MPI_TAG];
+
+ MPI_Get_count(&m_stat, MPI_CHAR, &bufsz);
+ //std::cout << "Receiving " <<bufsz << " bytes..." << std::endl;
+ buf = new char[bufsz+1];
+ MPI_Recv(buf, bufsz, MPI_CHAR, 0, m_stat.MPI_TAG, MPI_COMM_WORLD, &m_stat);
+
+ MPIProcessFactory::getFactory().calculate(m_stat.MPI_TAG, bufsz, buf, resp_queue, resp_mutex);
+ delete[] buf;
+ }
+
+#endif
+
+ running = false;
+
+ // send a "wake up, you're done! signal
+ boost::condition_variable& cv = MPIProcessFactory::getFactory().getConditionVar();
+ boost::unique_lock<boost::mutex> resp_lock(resp_mutex);
+ cv.notify_all();
+ resp_lock.unlock();
+
+}
+
+int main(int argc, char** argv){
+
+ int rank = 0;
+ int retval = 0;
+#ifdef HAVE_CXX_MPI
+ int threading = 0;
+ MPI_Init_thread(NULL, NULL, MPI_THREAD_MULTIPLE, &threading);
+ PLATO::Utility::MPIUtils::threadsafe_mpi = (threading == MPI_THREAD_MULTIPLE);
+ MPI_Comm_rank(MPI_COMM_WORLD, &rank);
+#endif
+ if(rank == 0){
+ retval = master_main(argc, argv);
+#ifdef HAVE_CXX_MPI
+ // Now we're done, so send a "please die now" message
+ // (in our case, this is a 0-length message with tag 0
+ int n_procs;
+ MPI_Comm_size(MPI_COMM_WORLD, &n_procs);
+ for(int j=1; j<n_procs; j++){
+ MPI_Send(0, 0, MPI_CHAR, j, 0, MPI_COMM_WORLD);
+ }
+#endif
+
+ } else {
+#ifdef HAVE_CXX_MPI
+
+ map<int, deque<pair<unsigned int, const char*> > > resp_queue_map;
+ boost::mutex resp_mutex;
+
+ // If we have threadsafe MPI, we can do things the "right" way!
+ if(PLATO::Utility::MPIUtils::threadsafe_mpi){
+ boost::unique_lock<boost::mutex> cv_lock(resp_mutex);
+ cv_lock.unlock();
+ boost::condition_variable& cv = MPIProcessFactory::getFactory().getConditionVar();
+
+ // If this is the case, we want to listen for requests and use the
+ // MPIProcessFactory to process them.
+
+ bool input_alive = true;
+ // kick off a thread that does nothing but get messages
+ boost::thread probe_t(boost::bind(&MPIProbeInput, boost::ref(resp_queue_map), boost::ref(resp_mutex), boost::ref(input_alive)));
+
+ //std::pair<unsigned int, const char*> response;
+ while(input_alive){
+ // wait for notification of something to do
+ cv_lock.lock();
+ cv.wait(cv_lock);
+ cv_lock.unlock();
+
+ // check for threads that are done, and send those responses now
+ MPISendResponses(resp_queue_map, resp_mutex);
+ }
+ } else {
+ // If we do NOT have threadsafe MPI, we have to aggregate all of our sends and receives!
+ MPI_Status m_stat;
+ int bufsz;
+ char* buf;
+ while(true){
+ MPI_Probe(0, MPI_ANY_TAG, MPI_COMM_WORLD, &m_stat);
+
+ // If we get a 0 tag, break out of the receive loop
+ if(m_stat.MPI_TAG == 0){
+ // wait on the threads (i.e., send the special "wait until done" message
+ for( map<int, deque<pair<unsigned int, const char*> > >::iterator rq_itr = resp_queue_map.begin();
+ rq_itr != resp_queue_map.end(); rq_itr++){
+ MPIProcessFactory::getFactory().calculate((*rq_itr).first, 0, 0, (*rq_itr).second, resp_mutex);
+ }
+
+ MPISendResponses(resp_queue_map, resp_mutex);
+ break;
+ }
+ deque<pair<unsigned int, const char*> >& resp_queue = resp_queue_map[m_stat.MPI_TAG];
+
+ MPI_Get_count(&m_stat, MPI_CHAR, &bufsz);
+ //std::cout << "Receiving " <<bufsz << " bytes..." << std::endl;
+ buf = new char[bufsz+1];
+ MPI_Recv(buf, bufsz, MPI_CHAR, 0, m_stat.MPI_TAG, MPI_COMM_WORLD, &m_stat);
+
+ MPIProcessFactory::getFactory().calculate(m_stat.MPI_TAG, bufsz, buf, resp_queue, resp_mutex);
+ delete[] buf;
+
+ MPISendResponses(resp_queue_map, resp_mutex);
+ }
+
+ }
+
+#endif
+ retval = 0;
+ }
+
+#ifdef HAVE_CXX_MPI
+ MPI_Finalize();
+#endif
+
+ return retval;
+
+}
+
+int master_main(int argc, char** argv) {
+
+ string logfn;
+
+ po::options_description cmd_opts("Command Line Options");
+ cmd_opts.add_options()
+ ("help,h","Display this help message")
+ ("list-command,L", "List the available commands")
+ ("help-command,C", po::value<string>()->implicit_value(""), "Get help for a particular command")
+ ("logfile,f", po::value<string>(&logfn)->default_value("plato.log"),"Name of the log file of PLATO output")
+ ("version,v", "Print the version of PLATO and exit");
+
+ InputManager::addOptions(cmd_opts);
+
+ po::variables_map vm;
+ po::parsed_options parsed = CommandLineParser(argc, argv).options(cmd_opts).run();
+ po::store(parsed, vm);
+ po::notify(vm);
+
+ InputManager::parseGlobalOptions(vm);
+
+ // OK, check for a few things now:
+ if(vm.count("help")){
+ cout << cmd_opts;
+ return 0;
+ }
+
+ if(vm.count("list-command")){
+ print_steps();
+ return 0;
+ }
+
+ if(vm.count("help-command")){
+ ProcessFactory& f = ProcessFactory::getFactory();
+ string cmd_str = vm["help-command"].as<string>();
+
+ // If no argument given, print help for ALL commands
+ if(cmd_str.size() == 0){
+ cout << "Printing help for ALL commands:" << std::endl;
+
+ for (ProcessFactory::const_iterator s_iter = f.begin(); s_iter != f.end(); s_iter++) {
+ cout << std::endl << "========================================" << std::endl;
+ Process* p = f.Create((*s_iter).first);
+ cout << "Help for " << p->getName() << ":" << std::endl;
+ po::options_description opts;
+ p->addOptions(opts);
+ p->printHelp(cout);
+ delete p;
+ //cout << "\tThresh: " << mystep.getThreshold() << endl;
+ }
+ return 0;
+ } else {
+ Process* p = f.Create(cmd_str);
+ if (!p) {
+ cout << "ERROR: Unrecognized command '" << cmd_str << "'\n\n";
+ cout << "Please use the '--list-command' option to see a list of commands available\n";
+ return 1;
+ } else {
+ po::options_description opts;
+ p->addOptions(opts);
+ p->printHelp(cout);
+ delete p;
+ return 0;
+ }
+ }
+ }
+
+ if(vm.count("version")){
+ std::cout << PACKAGE_STRING << "\n";
+ std::cout << "(c) Ritchie Lab, 2014\n";
+ std::cout << "To report bugs, please email " << PACKAGE_BUGREPORT << "\n";
+ return 0;
+ }
+
+ // TODO: set up the logger here
+ Logger::setLogFile(logfn);
+
+ vector<string> unrec_opt = po::collect_unrecognized(parsed.options, po::include_positional);
+ vector<string> leftover_opts;
+
+ vector<Process*> process_list;
+
+ if(unrec_opt.size() > 0){
+ Logger::log("Commands as given on the the command line:");
+ }
+
+ // OK, now we create the list of processes that we want to create
+ while(unrec_opt.size() > 0){
+ ProcessFactory& f = ProcessFactory::getFactory();
+
+ string cmd_str = unrec_opt[0];
+
+ Process* p = f.Create(cmd_str);
+ if(!p){
+ cout << "ERROR: Unrecognized command '" << cmd_str << "'\n\n";
+ cout << "Please use the 'list-command' option to see a list of commands available\n";
+ return 1;
+ }else{
+
+ // set up the options specific to the process
+ po::options_description subopts;
+ p->addOptions(subopts);
+
+ // pop off the first string, which is the name of the command
+ string cmd_name = unrec_opt[0];
+ unrec_opt.erase(unrec_opt.begin());
+
+ // now, parse the remaining options, stopping at the name of the next command
+ po::variables_map subvm;
+ try{
+ po::parsed_options subparsed = CommandLineParser(unrec_opt).options(subopts).run();
+ po::store(subparsed, subvm);
+ po::notify(subvm);
+ leftover_opts = po::collect_unrecognized(subparsed.options, po::include_positional);
+ Logger::log(cmd_name + " " +
+ boost::algorithm::join(
+ std::list<string>(unrec_opt.begin(),
+ unrec_opt.begin() + (unrec_opt.size() - leftover_opts.size())),
+ " "));
+
+ p->parseOptions(subvm);
+
+ unrec_opt = leftover_opts;
+ } catch(boost::program_options::unknown_option& err){
+ Logger::log_err("ERROR: Command '" + p->getName() + "' reported error: '" + err.what() +"'");
+ return 2;
+ } catch(std::exception& e){
+ Logger::log_err("ERROR: Command '" + p->getName() + "' reported unexpected error: '" + e.what() + "'");
+ return 3;
+ }
+ }
+
+ process_list.push_back(p);
+
+ }
+
+ // Log the commands
+ if(process_list.size() == 0){
+ Logger::log_err("ERROR: No commands given, nothing to do, please see help below!");
+ cout << cmd_opts;
+ return 1;
+ }
+
+
+ // Create a global DataSet for our use
+ DataSet global_ds;
+
+ // Go through each step and run on the global dataset
+ for(unsigned int i=0; i<process_list.size(); i++){
+ process_list[i]->run(global_ds);
+ }
+
+ // OK, now delete all of our processes
+ for(unsigned int i=0; i<process_list.size(); i++){
+ delete process_list[i];
+ }
+ process_list.clear();
+
+ // And we're done! (dataset will clean up on its own)
+ return 0;
+}
+
+/*
+ *Function: print_steps
+ *Return: void
+ *Parameters: STEPS object
+ *Description:
+ *Outputs valid batch file steps and their descriptions when the -S command line argument is used
+ */
+void print_steps() {
+ unsigned int field = 0;
+
+ ProcessFactory& f = ProcessFactory::getFactory();
+
+ for (ProcessFactory::const_iterator s_iter = f.begin(); s_iter != f.end(); s_iter++) {
+ if (s_iter->first.size() > field) {
+ field = s_iter->first.size();
+ }
+ }
+ field += 5;
+ cout << std::left << std::setw(field) << "Step:" << "Description:" << std::endl;
+ cout << std::left << std::setw(field) << "----------" << "---------------" << std::endl;
+
+ for (ProcessFactory::const_iterator s_iter = f.begin(); s_iter != f.end(); s_iter++) {
+
+ Process* p = f.Create((*s_iter).first);
+ cout << std::left << std::setw(field) << p->getName() << p->getDesc() << std::endl;
+ delete p;
+ //cout << "\tThresh: " << mystep.getThreshold() << endl;
+ }
+}
+
+/*
+ *Function: flipStrand
+ *Description:
+ *Flips the strand of the specified markers
+ *
+ */
+
+/*
+void flipStrand(vector<Marker*>* markers) {
+ if (opts::_FLIPFILE_.length() > 0) {
+ map<string, int> exclude;
+ opts::printLog("Flipping markers found in: " + opts::_FLIPFILE_ + "\n");
+ ifstream einput;
+ einput.open(opts::_FLIPFILE_.c_str(), ios::in);
+ if (!einput) {
+ opts::printLog("Error opening marker strand flip file: "
+ + opts::_FLIPFILE_ + "\n");
+ exit(1);
+ }
+ string probe = "";
+ string line = "";
+
+ while (getline(einput, line)) {
+ vector<string> tokens = General::ParseDelimitedLine(line);
+ if (tokens.size() != 1) {
+ opts::printLog("Strand flip markers column size != 1: " + line
+ + " Skipping line!!\n");
+ continue;
+ }
+ exclude[tokens[0]] = 1;
+ //exclude.push_back(probe);
+ }
+ einput.close();
+
+ int msize = markers->size();
+
+ for (int m = 0; m < msize; m++) {
+ Marker* mark = (*markers)[m];
+ if (!mark->isMicroSat()) {
+ map<string, int>::iterator found = exclude.find(
+ mark->getProbeID());
+ if (found != exclude.end()) {
+ string a1 = mark->getAllele1();
+ string a2 = mark->getAllele2();
+
+ if (a1 == "A") {
+ mark->resetAllele1("T");
+ } else if (a1 == "C") {
+ mark->resetAllele1("G");
+ } else if (a1 == "G") {
+ mark->resetAllele1("C");
+ } else if (a1 == "T") {
+ mark->resetAllele1("A");
+ } else if (a1 == "1") {
+ mark->resetAllele1("4");
+ } else if (a1 == "2") {
+
+static void Initialize();
+ mark->resetAllele1("3");
+ } else if (a1 == "3") {
+ mark->resetAllele1("2");
+ } else if (a1 == "4") {
+ mark->resetAllele1("1");
+ }
+
+ if (a2 == "A") {
+ mark->resetAllele2("T");
+ } else if (a2 == "C") {
+ mark->resetAllele2("G");
+ } else if (a2 == "G") {
+ mark->resetAllele2("C");
+ } else if (a2 == "T") {
+ mark->resetAllele2("A");
+ } else if (a2 == "1") {
+ mark->resetAllele2("4");
+ } else if (a2 == "2") {
+ mark->resetAllele2("3");
+ } else if (a2 == "3") {
+ mark->resetAllele2("2");
+ } else if (a2 == "4") {
+ mark->resetAllele2("1");
+ }
+ }
+ }
+ }
+ }
+
+}
+
+*/
+
+/*
+ *Function: printFamilies
+ *Description:
+ *outputs the structure of all families
+ *
+ */
+/*
+void printFamilies(vector<Family*>* families) {
+ int fsize = families->size();
+
+ string fname = opts::_OUTPREFIX_ + "family_structure.txt";
+ ofstream fout(fname.c_str());
+ if (!fout.is_open()) {
+ opts::printLog("Unable to open " + fname + "\n");
+ exit(1);
+ }
+
+ fname = opts::_OUTPREFIX_ + "family_data.txt";
+ ofstream fdout(fname.c_str());
+ if (!fdout.is_open()) {
+ opts::printLog("Unable to open " + fname + "\n");
+ exit(1);
+ }
+
+ for (int f = 0; f < fsize; f++) {
+ Family* fam = (*families)[f];
+ if (fam->isEnabled()) {
+ fout << "Family: " << fam->getFamID() << endl;
+ fout
+ << "----------------------------------------------------------"
+ << endl;
+ vector<Sample*>* founders = fam->getFounders();
+ int size = founders->size();
+ if (size > 0) {
+ for (int fs = 0; fs < size; fs++) {
+ Sample* founder = (*founders)[fs];
+ if (founder->isEnabled() || (founder->isExcluded()
+ && opts::_KEEP_EXC_SAMPLES_)) {
+ fout << "Founder: " << founder->getInd() << endl;
+ fout << descendTree(founder, 0) << endl;
+ }
+ }
+ } else {
+ fout << "No Founders...\n";
+ vector<Sample*>* samps = fam->getSamples();
+ int ssize = samps->size();
+ for (int ss = 0; ss < ssize; ss++) {
+ Sample* samp = (*samps)[ss];
+ if (samp->isEnabled() || (samp->isExcluded()
+ && opts::_KEEP_EXC_SAMPLES_)) {
+ fout << descendTree(samp, 0) << endl;
+ }
+ }
+ }
+ fout << endl << endl;
+ }
+ }
+
+ fdout
+ << "FamID\tMultigenerational?\tMutigen_with_affecteds\tTotal_Generations\tTotal_Num_Affected\tGeneration1-N_Affected Counts\n";
+ //output summary levels & affecteds
+ for (int f = 0; f < fsize; f++) {
+ Family* fam = (*families)[f];
+ if (fam->isEnabled()) {
+ map<int, vector<Sample*> > levels;
+ fdout << fam->getFamID();
+ vector<Sample*>* founders = fam->getFounders();
+ int size = founders->size();
+ if (size > 0) {
+ //vector<int> levels(size);
+ for (int fs = 0; fs < size; fs++) {
+ Sample* founder = (*founders)[fs];
+ if (founder->isEnabled() || (founder->isExcluded()
+ && opts::_KEEP_EXC_SAMPLES_)) {
+ //levels[fs] = descendTree3(founder, 0);
+ map<int, vector<Sample*> > levelstemp = descendTree3(
+ founder, 1);
+ //if(founder->getPheno() == 2){// && !founder->isFlagged()){
+ map<int, vector<Sample*> >::iterator titer;
+ for (titer = levelstemp.begin(); titer
+ != levelstemp.end(); titer++) {
+ vector<Sample*> mysamps = titer->second;
+ for (unsigned int ms = 0; ms < mysamps.size(); ms++) {
+ levels[titer->first].push_back(mysamps[ms]);
+ }
+ }
+ levels[1].push_back(founder);
+ // founder->setFlag(true);
+ //}
+ }
+ }
+ //sort(levels.begin(), levels.end());
+ //fdout << "\t" << levels[levels.size() - 1];
+ } else {
+ vector<Sample*>* samps = fam->getSamples();
+ int ssize = samps->size();
+ //vector<int> levels(ssize);
+ //map<int, int> levels;
+ for (int ss = 0; ss < ssize; ss++) {
+ Sample* samp = (*samps)[ss];
+ if (samp->isEnabled() || (samp->isExcluded()
+ && opts::_KEEP_EXC_SAMPLES_)) {
+ //levels[ss] = descendTree3(samp, 0);
+ map<int, vector<Sample*> > levelstemp = descendTree3(
+ samp, 1);
+ //if(samp->getPheno() == 2){// && !samp->isFlagged()){
+ map<int, vector<Sample*> >::iterator titer;
+ for (titer = levelstemp.begin(); titer
+ != levelstemp.end(); titer++) {
+ vector<Sample*> mysamps = titer->second;
+ for (unsigned int ms = 0; ms < mysamps.size(); ms++) {
+ levels[titer->first].push_back(mysamps[ms]);
+ }
+ }
+ levels[1].push_back(samp);
+ // samp->setFlag(true);
+ //}
+ }
+ }
+
+ //sort(levels.begin(), levels.end());
+ //fdout << "\t" << levels[levels.size() - 1];
+ }
+ // vector<Sample*>* fsamps = fam->getSamples();
+ int affected = 0;
+ // for(int s = 0; s < fsamps->size(); s++){
+ // if((*fsamps)[s]->getPheno() == 2 && (*fsamps)[s]->isFlagged()){
+ //affected++;
+ // (*fsamps)[s]->setFlag(false);
+ // }
+ // }
+ map<int, vector<Sample*> >::iterator iter = levels.end();
+ if (levels.size() > 1) {
+ fdout << "\tY";
+ } else {
+ fdout << "\tN";
+ }
+ for (iter = levels.begin(); iter != levels.end(); iter++) {
+ vector<Sample*> mysamps = iter->second;
+ map<Sample*, bool> newsamps;
+ for (unsigned int ms = 0; ms < mysamps.size(); ms++) {
+ newsamps[mysamps[ms]] = mysamps[ms]->getAffected();
+ }
+ map<Sample*, bool>::iterator niter;
+ for (niter = newsamps.begin(); niter != newsamps.end(); niter++) {
+
+ if (niter->second) {
+ bool useme = true;
+ map<int, vector<Sample*> >::iterator tempiter;
+ for (tempiter = levels.begin(); tempiter
+ != levels.end(); tempiter++) {
+ if (tempiter->first > iter->first) {
+ vector<Sample*> findsamples = tempiter->second;
+ vector<Sample*>::iterator findme = find(
+ findsamples.begin(), findsamples.end(),
+ niter->first);
+ if (findme != findsamples.end()) {
+ useme = false;
+ break;
+ }
+ }
+ }
+ if (useme)
+ affected++;
+ }
+ }
+ }
+ string affcounts = "";
+ int numlevelsofaff = 0;
+ for (iter = levels.begin(); iter != levels.end(); iter++) {
+ int laffected = 0;
+ vector<Sample*> mysamps = iter->second;
+ map<Sample*, bool> newsamps;
+ for (unsigned int ms = 0; ms < mysamps.size(); ms++) {
+ newsamps[mysamps[ms]] = mysamps[ms]->getAffected();
+ }
+ bool incme = false;
+ map<Sample*, bool>::iterator niter;
+ for (niter = newsamps.begin(); niter != newsamps.end(); niter++) {
+ if (niter->second) {
+ bool useme = true;
+ map<int, vector<Sample*> >::iterator tempiter;
+ for (tempiter = levels.begin(); tempiter
+ != levels.end(); tempiter++) {
+ if (tempiter->first > iter->first) {
+ vector<Sample*> findsamples = tempiter->second;
+ vector<Sample*>::iterator findme = find(
+ findsamples.begin(), findsamples.end(),
+ niter->first);
+ if (findme != findsamples.end()) {
+ useme = false;
+ break;
+ }
+ }
+ }
+ if (useme) {
+ laffected++;
+ if (!incme) {
+ numlevelsofaff++;
+ incme = true;
+ }
+ }
+ }
+ }
+ affcounts += "\t" + getString<int> (laffected);
+ }
+ if (numlevelsofaff > 1) {
+ fdout << "\tY";
+ } else {
+ fdout << "\tN";
+ }
+ fdout << "\t" << levels.size();
+ fdout << "\t" << affected;
+ fdout << affcounts;
+ fdout << endl;
+ }
+ }
+
+ fout.close();
+ fdout.close();
+
+}
+*/
+
+/*
+ *Function: descendTree
+ *Description:
+ *Recursively moves through pedigree until the child leaves are found to find structure
+ */
+/*
+string descendTree(Sample* sample, int level) {
+ string infospace = " ";
+ for (int i = 0; i < (level * 2); i++) {
+ infospace += " ";
+ }
+ vector<Sample*>* children = sample->getChildren();
+ if (children->size() == 0) {
+ string v = infospace + "->Ind: " + sample->getInd() + "\n" + infospace
+ + "->Mom: " + sample->getMomID() + "\n" + infospace + "->Dad: "
+ + sample->getDadID() + "\n";
+ if (sample->getSib() != NULL) {
+ v += infospace + "->Sibling: " + sample->getSib()->getInd() + "\n";
+ }
+ v += infospace + "->Children: 0\n";
+ return v;
+ }
+ int csize = children->size();
+
+ string val = "";
+ string v = infospace + "->Ind: " + sample->getInd() + "\n" + infospace
+ + "->Mom: " + sample->getMomID() + "\n" + infospace + "->Dad: "
+ + sample->getDadID() + "\n";
+ if (sample->getSib() != NULL) {
+ v += infospace + "->Sibling: " + sample->getSib()->getInd() + "\n";
+ }
+ v += infospace + "->Children: " + getString<int> (
+ sample->getChildren()->size()) + "\n";
+ val += v;
+ for (int c = 0; c < csize; c++) {
+ string temp = descendTree((*children)[c], (level + 1));
+
+ val += temp;
+ }
+ return val;
+}
+*/
+
+/*
+ *Function: descendTree3
+ *Description: returns # of levels
+ *Recursively moves through pedigree until the child leaves are found to find structure
+ */
+/*
+map<int, vector<Sample*> > descendTree3(Sample* sample, int level) {
+ map<int, vector<Sample*> > values;
+
+ vector<Sample*>* children = sample->getChildren();
+ if (children->size() == 0) {
+ return values;
+ //return level;
+ }
+ int csize = children->size();
+ vector<int> levels(csize);
+ for (int c = 0; c < csize; c++) {
+ map<int, vector<Sample*> > tempvalues = descendTree3((*children)[c],
+ (level + 1));
+ map<int, vector<Sample*> >::iterator iter;
+ for (iter = tempvalues.begin(); iter != tempvalues.end(); iter++) {
+ vector<Sample*> samps = iter->second;
+ for (unsigned int is = 0; is < samps.size(); is++) {
+ values[iter->first].push_back(samps[is]);
+ }
+ }
+ // if((*children)[c]->getPheno() == 2){// && !(*children)[c]->isFlagged()){
+ values[(level + 1)].push_back((*children)[c]);
+ //(*children)[c]->setFlag(true);
+ // }
+ }
+ // sort(levels.begin(), levels.end());
+ // level = levels[levels.size() - 1];
+ return values;
+}
+*/
+
+/*
+ *Function: compileOutputs
+ *Description:
+ *Compiles all QC & analysis outputs into single marker, sample, and family files
+ *Performed when all steps are complete.
+ */
+/*
+void compileOutputs(vector<Marker*>* markers, vector<Family*>* families,
+ vector<Sample*>* samples) {
+ opts::printLog("Compiling QC and Analysis output files...\n");
+
+ map<string, vector<string> > filenames = opts::getFilenames();
+ if (filenames["Marker"].size() > 0) {
+ map<Marker*, vector<string> > marker_output;
+ vector<string> all_columns;
+ map<string, Marker*> snpmap;
+ for (unsigned int i = 0; i < markers->size(); i++) {
+ Marker* mark = (*markers)[i];
+ string chr = getString<int> (mark->getChrom());
+ string bp = getString<int> (mark->getBPLOC());
+ snpmap[chr + "#" + bp] = mark;
+ }
+
+ cout << "Markers initialized...\n";
+
+ for (unsigned int i = 0; i < filenames["Marker"].size(); i++) {
+ string file = filenames["Marker"][i];
+ string step = opts::filesteps[file];
+
+ for (unsigned int j = 0; j < opts::fileheaders[file].size(); j++) {
+ cout << "Pushing " << file << " : " << j << endl;
+ all_columns.push_back("(" + file + ")"
+ + opts::fileheaders[file][j]);
+ }
+ }
+ string outfile = opts::_OUTPREFIX_ + "marker_summary.txt";
+ opts::printLog("Working on compiling SNP information...[" + outfile
+ + "]\n");
+ for (unsigned int i = 0; i < filenames["Marker"].size(); i++) {
+ string filename = filenames["Marker"][i];
+ string step = opts::filesteps[filename];
+ vector<string> filecols = opts::fileheaders[filename];
+
+ opts::printLog("\tParsing " + filename + "\n");
+
+ ifstream input;
+ input.open(filename.c_str(), ios::in);
+
+ if (!input) {
+ cerr << "Error opening file: " << filename << endl;
+ exit(1);
+ }
+
+ string header = "";
+ getline(input, header);
+
+ vector<string> columns;
+ General::Tokenize(header, columns, "\t");
+ int chrloc = -1;
+ int bploc = -1;
+ for (unsigned int l = 0; l < columns.size(); l++) {
+ if (columns[l] == "Chrom") {
+ chrloc = l;
+ }
+ if (columns[l] == "bploc") {
+ bploc = l;
+ }
+ if (chrloc > -1 && bploc > -1) {
+ break;
+ }
+ }
+ string line;
+ while (getline(input, line)) {
+ int count = 0;
+ vector<string> elems;
+ string token;
+ istringstream isstream(line);
+ while (getline(isstream, token, '\t')) {
+ elems.push_back(token);
+ }
+
+ //General::Tokenize(line, elems, "\t");
+ if (elems.size() == 0) {
+ continue;
+ }
+ if (elems.size() != columns.size()) {
+ cout << "Error on line: " << count << endl;
+ exit(1);
+ }
+ int chrom = atoi(elems[chrloc].c_str());
+ int bp = atoi(elems[bploc].c_str());
+ string key = elems[chrloc] + "#" + elems[bploc];
+
+ Marker* itermark = snpmap[key];//(*markers)[count];
+ /// while(itermark->getChrom() != chrom && itermark->getBPLOC() != bploc){
+ /// if(count + 1 >= markers->size()){
+ /// itermark = NULL;
+ /// break;
+ /// }
+ /// itermark = (*markers)[++count];
+ /// }
+ //vector<Marker*>::iterator itermark = find_if(markers->begin(), markers->end(), FindMarkerByChromBploc(chrom, bp));
+ if (itermark == NULL) {
+ cout << "Cannot find marker with chrom = " << chrom
+ << " and bploc = " << bp << endl;
+ exit(1);
+ }
+ Marker* mark = itermark;
+ map<Marker*, vector<string> >::iterator data =
+ marker_output.find(mark);
+ if (data == marker_output.end()) {
+ vector<string> mydata;
+ mydata.resize(all_columns.size(), "N/A");
+ marker_output[mark] = mydata;
+ }
+ for (unsigned int j = 0; j < filecols.size(); j++) {
+ vector<string>::iterator realcol = find(columns.begin(),
+ columns.end(), filecols[j]);
+ vector<string>::iterator allloc = find(all_columns.begin(),
+ all_columns.end(), "(" + filename + ")"
+ + filecols[j]);
+ if (realcol != columns.end()) {
+ int myloc = realcol - columns.begin();
+ int myallloc = allloc - all_columns.begin();
+ marker_output[mark][myallloc] = elems[myloc];
+ }
+ }
+ count++;
+ }
+ input.close();
+
+ }
+ ofstream out(outfile.c_str());
+ out << "Chrom\trsID\tProbeID\tbploc";
+ for (unsigned int i = 0; i < all_columns.size(); i++) {
+ out << "\t" << all_columns[i];
+ }
+ out << "\n";
+ map<Marker*, vector<string> >::iterator iter;
+ for (iter = marker_output.begin(); iter != marker_output.end(); iter++) {
+ Marker* mark = iter->first;
+ vector<string> data = iter->second;
+ out << mark->getChrom() << "\t" << mark->getRSID() << "\t"
+ << mark->getProbeID() << "\t" << mark->getBPLOC();
+ for (unsigned int i = 0; i < data.size(); i++) {
+ out << "\t" << data[i];
+ }
+ out << "\n";
+ }
+ out.close();
+ }
+ if (filenames["Family"].size() > 0) {
+ map<Family*, vector<string> > family_output;
+ vector<string> all_columns;
+ for (unsigned int i = 0; i < filenames["Family"].size(); i++) {
+ string file = filenames["Family"][i];
+ string step = opts::filesteps[file];
+
+ for (unsigned int j = 0; j < opts::fileheaders[file].size(); j++) {
+ all_columns.push_back("(" + file + ")"
+ + opts::fileheaders[file][j]);
+ }
+ }
+ string outfile = opts::_OUTPREFIX_ + "family_summary.txt";
+ opts::printLog("Working on compiling Family information...[" + outfile
+ + "]\n");
+ for (unsigned int i = 0; i < filenames["Family"].size(); i++) {
+ string filename = filenames["Family"][i];
+ string step = opts::filesteps[filename];
+ vector<string> filecols = opts::fileheaders[filename];
+
+ opts::printLog("\tParsing " + filename + "\n");
+
+ ifstream input;
+ input.open(filename.c_str(), ios::in);
+
+ if (!input) {
+ cerr << "Error opening file: " << filename << endl;
+ exit(1);
+ }
+
+ string header = "";
+ getline(input, header);
+
+ vector<string> columns;
+ General::Tokenize(header, columns, "\t");
+ int famloc = -1;
+ for (unsigned int l = 0; l < columns.size(); l++) {
+ if (columns[l] == "FamID") {
+ famloc = l;
+ }
+ if (famloc > -1) {
+ break;
+ }
+ }
+ if (famloc < 0) {
+ cout << "FamID column not found!\n";
+ exit(1);
+ }
+ string line;
+ int count = 1;
+ while (getline(input, line)) {
+ count++;
+ vector<string> elems;
+ string token;
+ istringstream isstream(line);
+ while (getline(isstream, token, '\t')) {
+ elems.push_back(token);
+ }
+ //General::Tokenize(line, elems, "\t");
+ if (elems.size() == 0) {
+ continue;
+ }
+ string famid = elems[famloc];
+ vector<Family*>::iterator iterfam = find_if(families->begin(),
+ families->end(), FindFamily(famid));
+ if (iterfam == families->end()) {
+ cout << "Cannot find family with famid = " << famid << endl;
+ exit(1);
+ }
+ Family* fam = *iterfam;
+ map<Family*, vector<string> >::iterator data =
+ family_output.find(fam);
+ if (data == family_output.end()) {
+ vector<string> mydata;
+ mydata.resize(all_columns.size(), "N/A");
+ family_output[fam] = mydata;
+ }
+ for (unsigned int j = 0; j < filecols.size(); j++) {
+ vector<string>::iterator realcol = find(columns.begin(),
+ columns.end(), filecols[j]);
+ vector<string>::iterator allloc = find(all_columns.begin(),
+ all_columns.end(), "(" + filename + ")"
+ + filecols[j]);
+ if (realcol != columns.end()) {
+ int myloc = realcol - columns.begin();
+ int myallloc = allloc - all_columns.begin();
+ family_output[fam][myallloc] = elems[myloc];
+ }
+ }
+ }
+ input.close();
+
+ }
+ ofstream out(outfile.c_str());
+ out << "FamID\tNumInds";
+ for (unsigned int i = 0; i < all_columns.size(); i++) {
+ out << "\t" << all_columns[i];
+ }
+ out << "\n";
+ map<Family*, vector<string> >::iterator iter;
+ for (iter = family_output.begin(); iter != family_output.end(); iter++) {
+ Family* fam = iter->first;
+ vector<string> data = iter->second;
+ out << fam->getFamID() << "\t" << fam->getSamples()->size();
+ for (unsigned int i = 0; i < data.size(); i++) {
+ out << "\t" << data[i];
+ }
+ out << "\n";
+ }
+ out.close();
+ }
+ if (filenames["Sample"].size() > 0) {
+ map<Sample*, vector<string> > sample_output;
+ vector<string> all_columns;
+ for (unsigned int i = 0; i < filenames["Sample"].size(); i++) {
+ string file = filenames["Sample"][i];
+ string step = opts::filesteps[file];
+
+ for (unsigned int j = 0; j < opts::fileheaders[file].size(); j++) {
+ all_columns.push_back("(" + file + ")"
+ + opts::fileheaders[file][j]);
+ }
+ }
+ string outfile = opts::_OUTPREFIX_ + "sample_summary.txt";
+ opts::printLog("Working on compiling Sample information...[" + outfile
+ + "]\n");
+ for (unsigned int i = 0; i < filenames["Sample"].size(); i++) {
+ string filename = filenames["Sample"][i];
+ string step = opts::filesteps[filename];
+ vector<string> filecols = opts::fileheaders[filename];
+
+ opts::printLog("\tParsing " + filename + "\n");
+
+ ifstream input;
+ input.open(filename.c_str(), ios::in);
+
+ if (!input) {
+ cerr << "Error opening file: " << filename << endl;
+ exit(1);
+ }
+
+ string header = "";
+ getline(input, header);
+
+ vector<string> columns;
+ General::Tokenize(header, columns, "\t");
+ int famloc = -1;
+ int indloc = -1;
+ for (unsigned int l = 0; l < columns.size(); l++) {
+ if (columns[l] == "FamID") {
+ famloc = l;
+ }
+ if (columns[l] == "IndID") {
+ indloc = l;
+ }
+ if (famloc > -1 && indloc > -1) {
+ break;
+ }
+ }
+ string line;
+ int count = 1;
+ while (getline(input, line)) {
+ count++;
+ vector<string> elems;
+ string token;
+ istringstream isstream(line);
+ while (getline(isstream, token, '\t')) {
+ elems.push_back(token);
+ }
+ //General::Tokenize(line, elems, "\t");
+ if (elems.size() == 0) {
+ continue;
+ }
+ string famid = elems[famloc];
+ string indid = elems[indloc];
+ vector<Sample*>::iterator itersamp = find_if(samples->begin(),
+ samples->end(), FindSampleByFamAndID(famid, indid));
+ if (itersamp == samples->end()) {
+ cout << "Cannot find sample with famid = " << famid
+ << " and indid = " << indid << endl;
+ exit(1);
+ }
+ Sample* samp = *itersamp;
+ map<Sample*, vector<string> >::iterator data =
+ sample_output.find(samp);
+ if (data == sample_output.end()) {
+ vector<string> mydata;
+ mydata.resize(all_columns.size(), "N/A");
+ sample_output[samp] = mydata;
+ }
+ for (unsigned int j = 0; j < filecols.size(); j++) {
+ vector<string>::iterator realcol = find(columns.begin(),
+ columns.end(), filecols[j]);
+ vector<string>::iterator allloc = find(all_columns.begin(),
+ all_columns.end(), "(" + filename + ")"
+ + filecols[j]);
+ if (realcol != columns.end()) {
+ int myloc = realcol - columns.begin();
+ int myallloc = allloc - all_columns.begin();
+ sample_output[samp][myallloc] = elems[myloc];
+ }
+ }
+ }
+ input.close();
+
+ }
+ ofstream out(outfile.c_str());
+ out << "FamID\tIndID\tSex\tAffection_Status";
+ for (unsigned int i = 0; i < all_columns.size(); i++) {
+ out << "\t" << all_columns[i];
+ }
+ out << "\n";
+ map<Sample*, vector<string> >::iterator iter;
+ for (iter = sample_output.begin(); iter != sample_output.end(); iter++) {
+ Sample* samp = iter->first;
+ vector<string> data = iter->second;
+ out << samp->getFamID() << "\t" << samp->getInd() << "\t";
+ if (samp->getSex()) {
+ out << "M\t";
+ } else {
+ out << "F\t";
+ }
+ out << samp->getPheno();
+
+ for (unsigned int i = 0; i < data.size(); i++) {
+ out << "\t" << data[i];
+ }
+ out << "\n";
+ }
+ out.close();
+ }
+ if (filenames["Batch"].size() > 0) {
+ map<string, vector<string> > batch_output;
+ vector<string> all_columns;
+ for (unsigned int i = 0; i < filenames["Batch"].size(); i++) {
+ string file = filenames["Batch"][i];
+ string step = opts::filesteps[file];
+
+ for (unsigned int j = 0; j < opts::fileheaders[file].size(); j++) {
+ all_columns.push_back("(" + file + ")"
+ + opts::fileheaders[file][j]);
+ }
+ }
+ string outfile = opts::_OUTPREFIX_ + "batch_summary.txt";
+ opts::printLog("Working on compiling Batch information...[" + outfile
+ + "]\n");
+ for (unsigned int i = 0; i < filenames["Batch"].size(); i++) {
+ string filename = filenames["Batch"][i];
+ string step = opts::filesteps[filename];
+ vector<string> filecols = opts::fileheaders[filename];
+
+ opts::printLog("\tParsing " + filename + "\n");
+
+ ifstream input;
+ input.open(filename.c_str(), ios::in);
+
+ if (!input) {
+ cerr << "Error opening file: " << filename << endl;
+ exit(1);
+ }
+
+ string header = "";
+ getline(input, header);
+
+ vector<string> columns;
+ General::Tokenize(header, columns, "\t");
+ int famloc = -1;
+ for (unsigned int l = 0; l < columns.size(); l++) {
+ if (columns[l] == "Batch") {
+ famloc = l;
+ }
+ if (famloc > -1) {
+ break;
+ }
+ }
+ if (famloc < 0) {
+ cout << "Batch column not found!\n";
+ exit(1);
+ }
+ string line;
+ int count = 1;
+ while (getline(input, line)) {
+ count++;
+ vector<string> elems;
+ string token;
+ istringstream isstream(line);
+ while (getline(isstream, token, '\t')) {
+ elems.push_back(token);
+ }
+ //General::Tokenize(line, elems, "\t");
+ if (elems.size() == 0) {
+ continue;
+ }
+ string batchid = elems[famloc];
+ // vector<>::iterator iterfam = find_if(families->begin(), families->end(), FindFamily(famid));
+ // if(iterfam == families->end()){
+ // cout << "Cannot find family with famid = " << famid << endl;
+ // exit(1);
+ // }
+ // Family* fam = *iterfam;
+ map<string, vector<string> >::iterator data =
+ batch_output.find(batchid);
+ if (data == batch_output.end()) {
+ vector<string> mydata;
+ mydata.resize(all_columns.size(), "N/A");
+ batch_output[batchid] = mydata;
+ }
+ for (unsigned int j = 0; j < filecols.size(); j++) {
+ vector<string>::iterator realcol = find(columns.begin(),
+ columns.end(), filecols[j]);
+ vector<string>::iterator allloc = find(all_columns.begin(),
+ all_columns.end(), "(" + filename + ")"
+ + filecols[j]);
+ if (realcol != columns.end()) {
+ int myloc = realcol - columns.begin();
+ int myallloc = allloc - all_columns.begin();
+ batch_output[batchid][myallloc] = elems[myloc];
+ }
+ }
+ }
+ input.close();
+
+ }
+ ofstream out(outfile.c_str());
+ out << "Batch";
+ for (unsigned int i = 0; i < all_columns.size(); i++) {
+ out << "\t" << all_columns[i];
+ }
+ out << "\n";
+ map<string, vector<string> >::iterator iter;
+ for (iter = batch_output.begin(); iter != batch_output.end(); iter++) {
+ string batchid = iter->first;
+ vector<string> data = iter->second;
+ out << batchid;
+ for (unsigned int i = 0; i < data.size(); i++) {
+ out << "\t" << data[i];
+ }
+ out << "\n";
+ }
+ out.close();
+ }
+
+}
+
+*/
diff --git a/main.h b/main.h
new file mode 100644
index 0000000..053c535
--- /dev/null
+++ b/main.h
@@ -0,0 +1,43 @@
+#ifndef PLATO_MAIN_H
+#define PLATO_MAIN_H
+
+#include "config.h"
+#include <deque>
+#include <map>
+#include <utility>
+
+#include <boost/thread/mutex.hpp>
+#include <boost/thread/condition_variable.hpp>
+
+// this is the entry point for the "master" (this is essentially the "old" main)
+int master_main(int, char**);
+
+// handles both MPI and regular invocations
+int main(int, char**);
+
+void MPISendResponses(std::map<int, std::deque<std::pair<unsigned int, const char*> > >& resp_queue_map, boost::mutex& resp_mutex);
+
+void MPIProbeInput(std::map<int, std::deque<std::pair<unsigned int, const char*> > >& resp_queue_map, boost::mutex& resp_mutex, bool& running);
+
+void print_steps();
+
+/*
+void startProcess(vector<Process*>&, int, InputFilter*);
+void parseInput(const string&, vector<Process*>& order_out);
+void usage();
+void error_check();
+void parseParameters();
+void print_help();
+void runStep(Process*, DataSet*);
+void flipStrand(vector<Marker*>*);
+void printFamilies(vector<Family*>*);
+void printOptions();
+string descendTree(Sample*, int);
+map<int, vector<Sample*> > descendTree3(Sample*, int);
+void compileOutputs(vector<Marker*>*, vector<Family*>*, vector<Sample*>*);
+void webcheck(vector<string>, map<string, vector<string> >);
+map<string, vector<string> > getBatchArgs(string);
+vector<vector<Process*> > optimize(vector<Process*>&);
+*/
+
+#endif
diff --git a/make/m4/ax_boost_base.m4 b/make/m4/ax_boost_base.m4
new file mode 100644
index 0000000..57e0ea2
--- /dev/null
+++ b/make/m4/ax_boost_base.m4
@@ -0,0 +1,237 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_boost_base.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_BOOST_BASE([MINIMUM-VERSION], [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
+#
+# DESCRIPTION
+#
+# Test for the Boost C++ libraries of a particular version (or newer)
+#
+# If no path to the installed boost library is given the macro searchs
+# under /usr, /usr/local, /opt and /opt/local and evaluates the
+# $BOOST_ROOT environment variable. Further documentation is available at
+# <http://randspringer.de/boost/index.html>.
+#
+# This macro calls:
+#
+# AC_SUBST(BOOST_CPPFLAGS) / AC_SUBST(BOOST_LDFLAGS)
+#
+# And sets:
+#
+# HAVE_BOOST
+#
+# LICENSE
+#
+# Copyright (c) 2008 Thomas Porschberg <thomas at randspringer.de>
+# Copyright (c) 2009 Peter Adolphs
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice
+# and this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+#serial 20
+
+AC_DEFUN([AX_BOOST_BASE],
+[
+AC_ARG_WITH([boost],
+ [AS_HELP_STRING([--with-boost@<:@=ARG@:>@],
+ [use Boost library from a standard location (ARG=yes),
+ from the specified location (ARG=<path>),
+ or disable it (ARG=no)
+ @<:@ARG=yes@:>@ ])],
+ [
+ if test "$withval" = "no"; then
+ want_boost="no"
+ elif test "$withval" = "yes"; then
+ want_boost="yes"
+ ac_boost_path=""
+ else
+ want_boost="yes"
+ ac_boost_path="$withval"
+ fi
+ ],
+ [want_boost="yes"])
+
+
+AC_ARG_WITH([boost-libdir],
+ AS_HELP_STRING([--with-boost-libdir=LIB_DIR],
+ [Force given directory for boost libraries. Note that this will override library path detection, so use this parameter only if default library detection fails and you know exactly where your boost libraries are located.]),
+ [
+ if test -d "$withval"
+ then
+ ac_boost_lib_path="$withval"
+ else
+ AC_MSG_ERROR(--with-boost-libdir expected directory name)
+ fi
+ ],
+ [ac_boost_lib_path=""]
+)
+
+if test "x$want_boost" = "xyes"; then
+ boost_lib_version_req=ifelse([$1], ,1.20.0,$1)
+ boost_lib_version_req_shorten=`expr $boost_lib_version_req : '\([[0-9]]*\.[[0-9]]*\)'`
+ boost_lib_version_req_major=`expr $boost_lib_version_req : '\([[0-9]]*\)'`
+ boost_lib_version_req_minor=`expr $boost_lib_version_req : '[[0-9]]*\.\([[0-9]]*\)'`
+ boost_lib_version_req_sub_minor=`expr $boost_lib_version_req : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
+ if test "x$boost_lib_version_req_sub_minor" = "x" ; then
+ boost_lib_version_req_sub_minor="0"
+ fi
+ WANT_BOOST_VERSION=`expr $boost_lib_version_req_major \* 100000 \+ $boost_lib_version_req_minor \* 100 \+ $boost_lib_version_req_sub_minor`
+ AC_MSG_CHECKING(for boostlib >= $boost_lib_version_req)
+ succeeded=no
+
+ dnl On 64-bit systems check for system libraries in both lib64 and lib.
+ dnl The former is specified by FHS, but e.g. Debian does not adhere to
+ dnl this (as it rises problems for generic multi-arch support).
+ dnl The last entry in the list is chosen by default when no libraries
+ dnl are found, e.g. when only header-only libraries are installed!
+ libsubdirs="lib"
+ ax_arch=`uname -m`
+ if test $ax_arch = x86_64 -o $ax_arch = ppc64 -o $ax_arch = s390x -o $ax_arch = sparc64; then
+ libsubdirs="lib lib64"
+ fi
+
+ dnl first we check the system location for boost libraries
+ dnl this location ist chosen if boost libraries are installed with the --layout=system option
+ dnl or if you install boost with RPM
+
+ std_paths="/usr /usr/local /opt /opt/local"
+
+ if test "$ac_boost_path" != ""; then
+ BOOST_CPPFLAGS="-I$ac_boost_path/include"
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ AC_REQUIRE([AC_PROG_CXX])
+ AC_LANG_PUSH(C++)
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+ @%:@include <boost/version.hpp>
+ ]], [[
+ #if BOOST_VERSION >= $WANT_BOOST_VERSION
+ // Everything is okay
+ #else
+ # error Boost version is too old
+ #endif
+ ]])],[
+ succeeded=yes
+ ],[
+ ])
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ AC_LANG_POP(C++)
+
+ elif test "$cross_compiling" != yes; then
+ _version=0
+
+ PATH_LIST="`echo $CPLUS_INCLUDE_PATH:$C_INCLUDE_PATH | sed 's/:/ /g' | sed 's/\/include\/* */ /g'` $std_paths"
+ for ac_boost_path_tmp in $PATH_LIST; do
+ if test -r "$ac_boost_path_tmp/include/boost/version.hpp"; then
+ BOOST_CPPFLAGS="-I$ac_boost_path_tmp/include"
+
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ AC_REQUIRE([AC_PROG_CXX])
+ AC_LANG_PUSH(C++)
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+ @%:@include <boost/version.hpp>
+ ]], [[
+ #if BOOST_VERSION >= $WANT_BOOST_VERSION
+ // Everything is okay
+ #else
+ # error Boost version is too old
+ #endif
+ ]])],[
+ succeeded=yes
+ ],[
+ ])
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ AC_LANG_POP(C++)
+
+ if test "x$succeeded" = "xyes"; then
+ ac_boost_path="$ac_boost_path_tmp"
+ break
+ fi
+ fi
+ done
+
+ fi
+
+ if test "x$succeeded" = "xyes"; then
+
+ BOOST_INC_PATH=`echo "$BOOST_CPPFLAGS" | sed 's/^-I//g'`
+
+ # Now, get the version!
+ V=`cat "$ac_boost_path/include/boost/version.hpp" | grep BOOST_VERSION | grep '#define' | grep -v HPP | sed 's/.*BOOST_VERSION//g'`
+ MAJ_V=`expr $V / 100000`
+ MIN_V=`expr $V / 100 % 1000`
+ PATCH_V=`expr $V % 100`
+
+ # Check for libraries that match the version
+ # first, check relative to the include path
+ if test "$ac_boost_lib_path" != ""; then
+ BOOST_LDFLAGS="-L$ac_boost_lib_path"
+ else
+
+ found_lib="no"
+
+ for libsubdir in $libsubdirs; do
+ if ls "$ac_boost_path/$libsubdir/libboost_"*$MAJ_V.$MIN_V.$PATCH_V >/dev/null 2>&1; then
+ BOOST_LDFLAGS="-L$ac_boost_path/$libsubdir"
+ found_lib="yes"
+ break
+ fi
+ done
+
+
+ # Now search the library path for a matching version
+ if test "x$found_lib" != "xyes"; then
+ LIB_PATH_LIST="`echo $LIBRARY_PATH:$LPATH | sed 's/:/ /g' | sed 's/\/lib\(64\)*\/* */ /g'` $std_paths"
+ for lib_path in $LIB_PATH_LIST; do
+ for libsubdir in $libsubdirs; do
+ if ls "$lib_path/$libsubdir/libboost_"*$MAJ_V.$MIN_V.$PATCH_V >/dev/null 2>&1; then
+ BOOST_LDFLAGS="-L$lib_path/$libsubdir"
+ found_lib="yes"
+ break
+ fi
+ done
+ if test "x$found_lib" = "xyes"; then break; fi
+ done
+ fi
+ fi
+
+ break
+ fi
+
+
+ #AC_LANG_POP([C++])
+
+
+ if test "$succeeded" != "yes" ; then
+ AC_MSG_RESULT(no)
+ # execute ACTION-IF-NOT-FOUND (if present):
+ ifelse([$3], , :, [$3])
+ else
+ AC_MSG_RESULT(yes)
+ if test "$BOOST_LDFLAGS" = ""; then
+ AC_MSG_WARN([Could not find compiled Boost libraries, use --with-boost-libdir to force detection])
+ BOOST_LDFLAGS="-L$ac_boost_path"
+ fi
+ AC_SUBST(BOOST_CPPFLAGS)
+ AC_SUBST(BOOST_LDFLAGS)
+
+ AC_DEFINE(HAVE_BOOST,,[define if the Boost library is available])
+ # execute ACTION-IF-FOUND (if present):
+ ifelse([$2], , :, [$2])
+ fi
+
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ LDFLAGS="$LDFLAGS_SAVED"
+fi
+
+])
diff --git a/make/m4/ax_boost_lib.m4 b/make/m4/ax_boost_lib.m4
new file mode 100644
index 0000000..8590d8c
--- /dev/null
+++ b/make/m4/ax_boost_lib.m4
@@ -0,0 +1,104 @@
+# This macro checks for the existence and linkability of a given boost
+# library. the macro takes up to 4 arguments (with the 1st 2 being mandatory)
+# The arguments are:
+# 1 - the name of the libarary, as it will be linked (lowercase + underscore)
+# 2 - A short C++ line that will fail on compile and link if the library is not found
+# 3 - (Optional) Extra libraries to include
+# 4 - (Optional) A header that defines the library. If not given, defaults to
+# boost/$1.hpp
+
+# Note: This macro is designed to be a generalization of the
+# AX_BOOST_* libraries used previously
+
+AC_DEFUN([AX_BOOST_LIB],
+[
+
+ LIB_NAME=$1
+ LIB_NAME_DASH="`echo $LIB_NAME | sed 's/_/-/g'`"
+ LIB_NAME_UPPER="`echo $LIB_NAME | tr [a-z] [A-Z]`"
+
+
+ AC_ARG_WITH([boost-]m4_bpatsubst($1,[_],[-]),
+ AS_HELP_STRING([--with-boost-]m4_bpatsubst($1,[_],[-])[@<:@=special-lib@:>@],
+ [use the ]$1[ library from boost - it is possible to specify a certain library for the linker
+ e.g. --with-boost-]m4_bpatsubst($1,[_],[-])[=]$1[-gcc-mt ]),
+ [
+ if test "$withval" = "no"; then
+ want_lib="no"
+ elif test "$withval" = "yes"; then
+ want_lib="yes"
+ ax_boost_lib=""
+ else
+ want_lib="yes"
+ ax_boost_lib="$withval"
+ fi
+ ],
+ [want_lib="yes";ax_boost_lib=""]
+ )
+
+ if test "x$want_lib" = "xyes"; then
+
+ HDR_INCLUDE="boost/$1.hpp"
+ if test "x"$4 != "x"; then
+ HDR_INCLUDE="$4"
+ fi
+
+
+ AC_REQUIRE([AX_BOOST_BASE])
+ AC_LANG_PUSH([C++])
+
+ CPPFLAGS_SAVE="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $BOOST_CPPFLAGS"
+ export CPPFLAGS
+
+ LDFLAGS_SAVE="$LDFLAGS"
+
+
+ AC_COMPILE_IFELSE(AC_LANG_PROGRAM([[@%:@include <$HDR_INCLUDE>]], [[$2]]),
+ [lib_compile=yes],
+ [lib_compile=no])
+
+ lib_link="no"
+ if test "x$lib_compile" != "xno"; then
+ # Try to find the location and name of the library
+ BOOSTLIBDIR=`echo $BOOST_LDFLAGS | sed -e 's/@<:@^\/@:>@*//'`
+ LIB_LIST=`ls $BOOSTLIBDIR/*boost_$1* 2>/dev/null | sed 's/.*\///g' | sed 's/\..*//g' | sed 's/^lib//g' | sort -u`
+ if test "x$ax_boost_lib" != "x"; then
+ LIB_LIST="$ax_boost_lib"
+ fi
+
+ LIB_FINAL=""
+
+ for lib_cand in $LIB_LIST; do
+ LDFLAGS="$LDFLAGS_SAVE $BOOST_LDFLAGS"
+ export LDFLAGS
+
+ # NOTE: every boost library has an _init function
+ AC_CHECK_LIB($lib_cand, _init, [lib_link=yes],[lib_link=no], [$3])
+
+ if test "x$lib_link" = "xyes"; then
+ LIB_FINAL="$lib_cand"
+ break
+ fi
+ done
+
+ fi
+
+ AC_LANG_POP([C++])
+
+ AC_MSG_CHECKING([whether the boost::]$1[ library is available])
+
+ CPPFLAGS="$CPPFLAGS_SAVE"
+ LDFLAGS="$LDFLAGS_SAVE"
+
+ if test "x$lib_compile" = "xyes" -a "x$lib_link" = "xyes"; then
+ AC_MSG_RESULT(yes)
+ AC_DEFINE([HAVE_BOOST_]m4_toupper($1),,[define if the boost::]$1[ library is available])
+ AC_SUBST([BOOST_]m4_toupper($1)[_LIB],"-l$LIB_FINAL $3")
+ else
+ AC_MSG_RESULT(no)
+ fi
+ fi
+
+
+])
diff --git a/make/m4/ax_check_enable_debug.m4 b/make/m4/ax_check_enable_debug.m4
new file mode 100644
index 0000000..ef3ab64
--- /dev/null
+++ b/make/m4/ax_check_enable_debug.m4
@@ -0,0 +1,98 @@
+# ===========================================================================
+# http://autoconf-archive.cryp.to/ax_check_enable_debug.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# Check for the presence of an --enable-debug option to configure and
+# allow/avoid compiled debugging flags appropriately.
+#
+# AX_CHECK_ENABLE_DEBUG([enable by default=yes/info/profile/no])
+#
+# DESCRIPTION
+#
+# Check for the presence of an --enable-debug option to configure, with the
+# specified default value used when the option is not present. Return the
+# value in the variable $ax_enable_debug.
+#
+# Specifying 'yes' adds '-g -O0' to the compilation flags for all languages.
+# Specifying 'info' adds '-g' to the compilation flags. Specifying 'profile'
+# adds '-g -pg' to the compilation flags and '-pg' to the linking flags.
+# Otherwise, nothing is added. Define NDEBUG if debug disabled. If debug
+# not enabled, ensure AC_PROG_* will not add debugging flags. Should be
+# invoked prior to any AC_PROG_* compiler checks.
+#
+# LAST MODIFICATION
+#
+# 2011-03-09
+#
+# COPYLEFT
+#
+# Copyright (c) 2011 Rhys Ulerich <rhys.ulerich at gmail.com>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice
+# and this notice are preserved.
+
+AC_DEFUN([AX_CHECK_ENABLE_DEBUG],[
+ AC_BEFORE([$0],[AC_PROG_CC])dnl
+ AC_BEFORE([$0],[AC_PROG_CXX])dnl
+ AC_BEFORE([$0],[AC_PROG_F77])dnl
+ AC_BEFORE([$0],[AC_PROG_FC])dnl
+
+ AC_MSG_CHECKING(whether to enable debugging)
+ m4_define(ax_enable_debug_default,[m4_tolower(m4_normalize(ifelse([$1],,[no],[$1])))])
+ AC_ARG_ENABLE(debug,
+ [AS_HELP_STRING([--enable-debug]@<:@=ax_enable_debug_default@:>@,[compile with debugging; one of yes/info/profile/no])],
+ [],enable_debug=ax_enable_debug_default)
+ if test "x$enable_debug" = "xyes" || test "x$enable_debug" = "x"; then
+ AC_MSG_RESULT(yes)
+ CFLAGS="${CFLAGS} -g -pg -Wall"
+ CXXFLAGS="${CXXFLAGS} -g -O0 -Wall"
+ FFLAGS="${FFLAGS} -g -O0 -Wall"
+ FCFLAGS="${FCFLAGS} -g -O0 -Wall"
+ OBJCFLAGS="${OBJCFLAGS} -g -O0 -Wall"
+ else
+ if test "x$enable_debug" = "xinfo"; then
+ AC_MSG_RESULT(info)
+ CFLAGS="${CFLAGS} -g"
+ CXXFLAGS="${CXXFLAGS} -g"
+ FFLAGS="${FFLAGS} -g"
+ FCFLAGS="${FCFLAGS} -g"
+ OBJCFLAGS="${OBJCFLAGS} -g"
+ elif test "x$enable_debug" = "xprofile"; then
+ AC_MSG_RESULT(profile)
+ CFLAGS="${CFLAGS} -g -pg"
+ CXXFLAGS="${CXXFLAGS} -g -pg"
+ FFLAGS="${FFLAGS} -g -pg"
+ FCFLAGS="${FCFLAGS} -g -pg"
+ OBJCFLAGS="${OBJCFLAGS} -g -pg"
+ LDFLAGS="${LDFLAGS} -pg"
+ else
+ AC_MSG_RESULT(no)
+ dnl Ensure AC_PROG_CC/CXX/F77/FC/OBJC will not enable debug flags
+ dnl by setting any unset environment flag variables
+ dnl In addition to the optimization, disable range checking in the GSL
+ dnl Also, disable assertions.
+ if test "x${CFLAGS+set}" != "xset"; then
+ CFLAGS="-O2 -DGSL_RANGE_CHECK_OFF -DNDEBUG"
+ fi
+ if test "x${CXXFLAGS+set}" != "xset"; then
+ CXXFLAGS="-O2 -DGSL_RANGE_CHECK_OFF -DNDEBUG"
+ fi
+ if test "x${FFLAGS+set}" != "xset"; then
+ FFLAGS="-O2"
+ fi
+ if test "x${FCFLAGS+set}" != "xset"; then
+ FCFLAGS="-O2"
+ fi
+ if test "x${OBJCFLAGS+set}" != "xset"; then
+ OBJCFLAGS="-O2"
+ fi
+ fi
+ dnl assert.h is a NOP if NDEBUG is defined, so define it.
+ dnl Do this at the command line so EVERY source gets it!
+ dnl AC_DEFINE(NDEBUG,,[Define if debugging is disabled])
+ fi
+ ax_enable_debug=$enable_debug
+])
diff --git a/make/m4/ax_check_enable_loki.m4 b/make/m4/ax_check_enable_loki.m4
new file mode 100644
index 0000000..db5737a
--- /dev/null
+++ b/make/m4/ax_check_enable_loki.m4
@@ -0,0 +1,15 @@
+AC_DEFUN([AX_CHECK_ENABLE_LOKI],[
+ AC_MSG_CHECKING(whether to enable installation of the LOKI databse)
+ m4_define(ax_enable_loki_default,[m4_tolower(m4_normalize(ifelse([$1],,[yes],[$1])))])
+ AC_ARG_ENABLE(loki,
+ [AS_HELP_STRING([--enable-loki]@<:@=ax_enable_loki_default@:>@,[Download and install the LOKI databse; one of yes/no])],
+ [],enable_loki=ax_enable_loki_default)
+ if test "x$enable_loki" = "xno"; then
+ AC_MSG_RESULT(no)
+ else
+ AC_MSG_RESULT(yes)
+ dnl assert.h is a NOP if NDEBUG is defined, so define it.
+ fi
+ ax_enable_loki=$enable_loki
+ AM_CONDITIONAL(LOKI_INSTALL, test x$enable_loki = xyes)
+])
diff --git a/make/m4/ax_compare_version.m4 b/make/m4/ax_compare_version.m4
new file mode 100644
index 0000000..74dc0fd
--- /dev/null
+++ b/make/m4/ax_compare_version.m4
@@ -0,0 +1,177 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_compare_version.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_COMPARE_VERSION(VERSION_A, OP, VERSION_B, [ACTION-IF-TRUE], [ACTION-IF-FALSE])
+#
+# DESCRIPTION
+#
+# This macro compares two version strings. Due to the various number of
+# minor-version numbers that can exist, and the fact that string
+# comparisons are not compatible with numeric comparisons, this is not
+# necessarily trivial to do in a autoconf script. This macro makes doing
+# these comparisons easy.
+#
+# The six basic comparisons are available, as well as checking equality
+# limited to a certain number of minor-version levels.
+#
+# The operator OP determines what type of comparison to do, and can be one
+# of:
+#
+# eq - equal (test A == B)
+# ne - not equal (test A != B)
+# le - less than or equal (test A <= B)
+# ge - greater than or equal (test A >= B)
+# lt - less than (test A < B)
+# gt - greater than (test A > B)
+#
+# Additionally, the eq and ne operator can have a number after it to limit
+# the test to that number of minor versions.
+#
+# eq0 - equal up to the length of the shorter version
+# ne0 - not equal up to the length of the shorter version
+# eqN - equal up to N sub-version levels
+# neN - not equal up to N sub-version levels
+#
+# When the condition is true, shell commands ACTION-IF-TRUE are run,
+# otherwise shell commands ACTION-IF-FALSE are run. The environment
+# variable 'ax_compare_version' is always set to either 'true' or 'false'
+# as well.
+#
+# Examples:
+#
+# AX_COMPARE_VERSION([3.15.7],[lt],[3.15.8])
+# AX_COMPARE_VERSION([3.15],[lt],[3.15.8])
+#
+# would both be true.
+#
+# AX_COMPARE_VERSION([3.15.7],[eq],[3.15.8])
+# AX_COMPARE_VERSION([3.15],[gt],[3.15.8])
+#
+# would both be false.
+#
+# AX_COMPARE_VERSION([3.15.7],[eq2],[3.15.8])
+#
+# would be true because it is only comparing two minor versions.
+#
+# AX_COMPARE_VERSION([3.15.7],[eq0],[3.15])
+#
+# would be true because it is only comparing the lesser number of minor
+# versions of the two values.
+#
+# Note: The characters that separate the version numbers do not matter. An
+# empty string is the same as version 0. OP is evaluated by autoconf, not
+# configure, so must be a string, not a variable.
+#
+# The author would like to acknowledge Guido Draheim whose advice about
+# the m4_case and m4_ifvaln functions make this macro only include the
+# portions necessary to perform the specific comparison specified by the
+# OP argument in the final configure script.
+#
+# LICENSE
+#
+# Copyright (c) 2008 Tim Toolan <toolan at ele.uri.edu>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice
+# and this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+#serial 11
+
+dnl #########################################################################
+AC_DEFUN([AX_COMPARE_VERSION], [
+ AC_REQUIRE([AC_PROG_AWK])
+
+ # Used to indicate true or false condition
+ ax_compare_version=false
+
+ # Convert the two version strings to be compared into a format that
+ # allows a simple string comparison. The end result is that a version
+ # string of the form 1.12.5-r617 will be converted to the form
+ # 0001001200050617. In other words, each number is zero padded to four
+ # digits, and non digits are removed.
+ AS_VAR_PUSHDEF([A],[ax_compare_version_A])
+ A=`echo "$1" | sed -e 's/\([[0-9]]*\)/Z\1Z/g' \
+ -e 's/Z\([[0-9]]\)Z/Z0\1Z/g' \
+ -e 's/Z\([[0-9]][[0-9]]\)Z/Z0\1Z/g' \
+ -e 's/Z\([[0-9]][[0-9]][[0-9]]\)Z/Z0\1Z/g' \
+ -e 's/[[^0-9]]//g'`
+
+ AS_VAR_PUSHDEF([B],[ax_compare_version_B])
+ B=`echo "$3" | sed -e 's/\([[0-9]]*\)/Z\1Z/g' \
+ -e 's/Z\([[0-9]]\)Z/Z0\1Z/g' \
+ -e 's/Z\([[0-9]][[0-9]]\)Z/Z0\1Z/g' \
+ -e 's/Z\([[0-9]][[0-9]][[0-9]]\)Z/Z0\1Z/g' \
+ -e 's/[[^0-9]]//g'`
+
+ dnl # In the case of le, ge, lt, and gt, the strings are sorted as necessary
+ dnl # then the first line is used to determine if the condition is true.
+ dnl # The sed right after the echo is to remove any indented white space.
+ m4_case(m4_tolower($2),
+ [lt],[
+ ax_compare_version=`echo "x$A
+x$B" | sed 's/^ *//' | sort -r | sed "s/x${A}/false/;s/x${B}/true/;1q"`
+ ],
+ [gt],[
+ ax_compare_version=`echo "x$A
+x$B" | sed 's/^ *//' | sort | sed "s/x${A}/false/;s/x${B}/true/;1q"`
+ ],
+ [le],[
+ ax_compare_version=`echo "x$A
+x$B" | sed 's/^ *//' | sort | sed "s/x${A}/true/;s/x${B}/false/;1q"`
+ ],
+ [ge],[
+ ax_compare_version=`echo "x$A
+x$B" | sed 's/^ *//' | sort -r | sed "s/x${A}/true/;s/x${B}/false/;1q"`
+ ],[
+ dnl Split the operator from the subversion count if present.
+ m4_bmatch(m4_substr($2,2),
+ [0],[
+ # A count of zero means use the length of the shorter version.
+ # Determine the number of characters in A and B.
+ ax_compare_version_len_A=`echo "$A" | $AWK '{print(length)}'`
+ ax_compare_version_len_B=`echo "$B" | $AWK '{print(length)}'`
+
+ # Set A to no more than B's length and B to no more than A's length.
+ A=`echo "$A" | sed "s/\(.\{$ax_compare_version_len_B\}\).*/\1/"`
+ B=`echo "$B" | sed "s/\(.\{$ax_compare_version_len_A\}\).*/\1/"`
+ ],
+ [[0-9]+],[
+ # A count greater than zero means use only that many subversions
+ A=`echo "$A" | sed "s/\(\([[0-9]]\{4\}\)\{m4_substr($2,2)\}\).*/\1/"`
+ B=`echo "$B" | sed "s/\(\([[0-9]]\{4\}\)\{m4_substr($2,2)\}\).*/\1/"`
+ ],
+ [.+],[
+ AC_WARNING(
+ [illegal OP numeric parameter: $2])
+ ],[])
+
+ # Pad zeros at end of numbers to make same length.
+ ax_compare_version_tmp_A="$A`echo $B | sed 's/./0/g'`"
+ B="$B`echo $A | sed 's/./0/g'`"
+ A="$ax_compare_version_tmp_A"
+
+ # Check for equality or inequality as necessary.
+ m4_case(m4_tolower(m4_substr($2,0,2)),
+ [eq],[
+ test "x$A" = "x$B" && ax_compare_version=true
+ ],
+ [ne],[
+ test "x$A" != "x$B" && ax_compare_version=true
+ ],[
+ AC_WARNING([illegal OP parameter: $2])
+ ])
+ ])
+
+ AS_VAR_POPDEF([A])dnl
+ AS_VAR_POPDEF([B])dnl
+
+ dnl # Execute ACTION-IF-TRUE / ACTION-IF-FALSE.
+ if test "$ax_compare_version" = "true" ; then
+ m4_ifvaln([$4],[$4],[:])dnl
+ m4_ifvaln([$5],[else $5])dnl
+ fi
+]) dnl AX_COMPARE_VERSION
diff --git a/make/m4/ax_freetype_base.m4 b/make/m4/ax_freetype_base.m4
new file mode 100644
index 0000000..a64c3d4
--- /dev/null
+++ b/make/m4/ax_freetype_base.m4
@@ -0,0 +1,123 @@
+AC_DEFUN([AX_FREETYPE_BASE],
+[
+AC_ARG_WITH([freetype],
+ [AS_HELP_STRING([--with-freetype@<:@=ARG@:>@],
+ [use Boost library from a standard location (ARG=yes),
+ from the specified location (ARG=<path>),
+ or disable it (ARG=no)
+ @<:@ARG=yes@:>@ ])],
+ [
+ if test "$withval" = "no"; then
+ want_freetype="no"
+ elif test "$withval" = "yes"; then
+ want_freetype="yes"
+ ac_freetype_path=""
+ else
+ want_freetype="yes"
+ ac_freetype_path="$withval"
+ fi
+ ],
+ [want_freetype="yes"])
+
+
+AC_ARG_WITH([freetype-libdir],
+ AS_HELP_STRING([--with-freetype-libdir=LIB_DIR],
+ [Force given directory for freetype libraries. Note that this will override library path detection, so use this parameter only if default library detection fails and you know exactly where your freetype libraries are located.]),
+ [
+ if test -d "$withval"
+ then
+ ac_freetype_lib_path="$withval"
+ else
+ AC_MSG_ERROR(--with-freetype-libdir expected directory name)
+ fi
+ ],
+ [ac_freetype_lib_path=""]
+)
+
+if test "x$want_freetype" = "xyes"; then
+
+ freetype_compile=no
+ freetype_link=no
+
+ freetype_lib_version_req=ifelse([$1], ,2.0.9,$1)
+ freetype_lib_version_req_shorten=`expr $freetype_lib_version_req : '\([[0-9]]*\.[[0-9]]*\)'`
+ freetype_lib_version_req_major=`expr $freetype_lib_version_req : '\([[0-9]]*\)'`
+ freetype_lib_version_req_minor=`expr $freetype_lib_version_req : '[[0-9]]*\.\([[0-9]]*\)'`
+ freetype_lib_version_req_sub_minor=`expr $freetype_lib_version_req : '[[0-9]]*\.[[0-9]]*\.\([[0-9]]*\)'`
+ if test "x$freetype_lib_version_req_sub_minor" = "x" ; then
+ freetype_lib_version_req_sub_minor="0"
+ fi
+ WANT_FREETYPE_VERSION=`expr $freetype_lib_version_req_major \* 100000 \+ $freetype_lib_version_req_minor \* 100 \+ $freetype_lib_version_req_sub_minor`
+
+ dnl First, check for the location of the freetype libraries
+
+ if test "$ac_freetype_path" != ""; then
+ if test -d "$ac_freetype_path/include/freetype2" && test -r "$ac_freetype_path/include/freetype2"; then
+ FREETYPE_CPPFLAGS="-I$ac_freetype_path/include/freetype2"
+ else
+ FREETYPE_CPPFLAGS="-I$ac_freetype_path"
+ fi
+ else
+ FREETYPE_CPPFLAGS=`freetype-config --cflags`
+ fi
+
+ dnl Now, check the version number to see if it is correct!
+
+ AC_MSG_CHECKING([for Freetype >= $freetype_lib_version_req])
+
+ old_CPPFLAGS="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $FREETYPE_CPPFLAGS"
+ export CPPFLAGS
+ AC_TRY_CPP([#include <ft2build.h>
+ #include FT_FREETYPE_H
+ #if FREETYPE_MAJOR*100000+FREETYPE_MINOR*100+FREETYPE_PATCH < $WANT_FREETYPE_VERSION
+ #error Freetype version too low.
+ #endif
+ ],
+ [freetype_compile=yes],
+ []
+ )
+
+ dnl Great, now check for linking!
+
+ FREETYPE_LIBSTR=`freetype-config --libs`
+ if test "$ac_freetype_lib_path" != ""; then
+ FREETYPE_LDFLAGS="-L$ac_freetype_lib_path"
+ else
+ FREETYPE_LDFLAGS=`echo $FREETYPE_LIBSTR | sed 's/ *-l[a-zA-Z0-9]*$//'`
+ fi
+ FREETYPE_LIB=`echo $FREETYPE_LIBSTR | grep -Go "\-l[a-zA-Z0-9]*$"`
+
+ old_LDFLAGS="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $FREETYPE_LDFLAGS $FREETYPE_LIB"
+ export LDFLAGS
+
+ AC_LANG_PUSH([C++])
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <ft2build.h>
+ #include FT_FREETYPE_H
+ ],
+ [FT_Library lib;
+ FT_Init_FreeType(&lib);])],
+ [freetype_link=yes],
+ []
+ )
+ AC_LANG_POP([C++])
+
+ if test "x$freetype_compile" = "xyes" -a "x$freetype_link" = "xyes"; then
+ AC_MSG_RESULT(yes)
+ AC_SUBST(FREETYPE_CPPFLAGS)
+ AC_SUBST(FREETYPE_LDFLAGS)
+ AC_SUBST(FREETYPE_LIB)
+ AC_DEFINE(HAVE_FREETYPE,,[define if the freetype library is available])
+ ifelse([$2], , :, [$2])
+ else
+ AC_MSG_RESULT(no)
+ ifelse([$3], , :, [$3])
+ fi
+
+ CPPFLAGS="$old_CPPFLAGS"
+ LDFLAGS="$old_LDFLAGS"
+fi
+
+])
diff --git a/make/m4/ax_path_gsl.m4 b/make/m4/ax_path_gsl.m4
new file mode 100644
index 0000000..ee74122
--- /dev/null
+++ b/make/m4/ax_path_gsl.m4
@@ -0,0 +1,164 @@
+# Configure path for the GNU Scientific Library
+# Christopher R. Gabriel <cgabriel at linux.it>, April 2000
+
+
+AC_DEFUN([AX_PATH_GSL],
+[
+AC_ARG_WITH(gsl-prefix,[ --with-gsl-prefix=PFX Prefix where GSL is installed (optional)],
+ gsl_prefix="$withval", gsl_prefix="")
+AC_ARG_WITH(gsl-exec-prefix,[ --with-gsl-exec-prefix=PFX Exec prefix where GSL is installed (optional)],
+ gsl_exec_prefix="$withval", gsl_exec_prefix="")
+AC_ARG_ENABLE(gsltest, [ --disable-gsltest Do not try to compile and run a test GSL program],
+ , enable_gsltest=yes)
+
+ if test "x${GSL_CONFIG+set}" != xset ; then
+ if test "x$gsl_prefix" != x ; then
+ GSL_CONFIG="$gsl_prefix/bin/gsl-config"
+ fi
+ if test "x$gsl_exec_prefix" != x ; then
+ GSL_CONFIG="$gsl_exec_prefix/bin/gsl-config"
+ fi
+ fi
+
+ AC_PATH_PROG(GSL_CONFIG, gsl-config, no)
+ min_gsl_version=ifelse([$1], ,0.2.5,$1)
+ AC_MSG_CHECKING(for GSL - version >= $min_gsl_version)
+ no_gsl=""
+ if test "$GSL_CONFIG" = "no" ; then
+ no_gsl=yes
+ else
+ GSL_CFLAGS=$($GSL_CONFIG --cflags)
+ GSL_LDFLAGS=$($GSL_CONFIG --libs | sed 's/ *-l[^ ]*//g')
+ GSL_LIBS=$($GSL_CONFIG --libs | sed -e "s|$GSL_LDFLAGS||" -e 's/^ *//g')
+
+ gsl_major_version=`$GSL_CONFIG --version | \
+ sed 's/^\([[0-9]]*\).*/\1/'`
+ if test "x${gsl_major_version}" = "x" ; then
+ gsl_major_version=0
+ fi
+
+ gsl_minor_version=`$GSL_CONFIG --version | \
+ sed 's/^\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\).*/\2/'`
+ if test "x${gsl_minor_version}" = "x" ; then
+ gsl_minor_version=0
+ fi
+
+ gsl_micro_version=`$GSL_CONFIG --version | \
+ sed 's/^\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\)\.\{0,1\}\([[0-9]]*\).*/\3/'`
+ if test "x${gsl_micro_version}" = "x" ; then
+ gsl_micro_version=0
+ fi
+
+ if test "x$enable_gsltest" = "xyes" ; then
+ ac_save_CFLAGS="$CFLAGS"
+ ac_save_LIBS="$LIBS"
+ CFLAGS="$CFLAGS $GSL_CFLAGS"
+ LIBS="$LIBS $GSL_LDFLAGS $GSL_LIBS"
+
+ rm -f conf.gsltest
+ AC_TRY_RUN([
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+
+char* my_strdup (const char *str);
+
+char*
+my_strdup (const char *str)
+{
+ char *new_str;
+
+ if (str)
+ {
+ new_str = (char *)malloc ((strlen (str) + 1) * sizeof(char));
+ strcpy (new_str, str);
+ }
+ else
+ new_str = NULL;
+
+ return new_str;
+}
+
+int main (void)
+{
+ int major = 0, minor = 0, micro = 0;
+ int n;
+ char *tmp_version;
+
+ system ("touch conf.gsltest");
+
+ /* HP/UX 9 (%@#!) writes to sscanf strings */
+ tmp_version = my_strdup("$min_gsl_version");
+
+ n = sscanf(tmp_version, "%d.%d.%d", &major, &minor, µ) ;
+
+ if (n != 2 && n != 3) {
+ printf("%s, bad version string\n", "$min_gsl_version");
+ exit(1);
+ }
+
+ if (($gsl_major_version > major) ||
+ (($gsl_major_version == major) && ($gsl_minor_version > minor)) ||
+ (($gsl_major_version == major) && ($gsl_minor_version == minor) && ($gsl_micro_version >= micro)))
+ {
+ exit(0);
+ }
+ else
+ {
+ exit(1);
+ }
+}
+
+],, no_gsl=yes,[echo $ac_n "cross compiling; assumed OK... $ac_c"])
+ CFLAGS="$ac_save_CFLAGS"
+ LIBS="$ac_save_LIBS"
+ fi
+ fi
+ if test "x$no_gsl" = x ; then
+ AC_MSG_RESULT(yes)
+ ifelse([$2], , :, [$2])
+ else
+ AC_MSG_RESULT(no)
+ if test "$GSL_CONFIG" = "no" ; then
+ echo "*** The gsl-config script installed by GSL could not be found"
+ echo "*** If GSL was installed in PREFIX, make sure PREFIX/bin is in"
+ echo "*** your path, or set the GSL_CONFIG environment variable to the"
+ echo "*** full path to gsl-config."
+ else
+ if test -f conf.gsltest ; then
+ :
+ else
+ echo "*** Could not run GSL test program, checking why..."
+ CFLAGS="$CFLAGS $GSL_CFLAGS"
+ LIBS="$LIBS $GSL_LDFLAGS $GSL_LIBS"
+ AC_TRY_LINK([
+#include <stdio.h>
+], [ return 0; ],
+ [ echo "*** The test program compiled, but did not run. This usually means"
+ echo "*** that the run-time linker is not finding GSL or finding the wrong"
+ echo "*** version of GSL. If it is not finding GSL, you'll need to set your"
+ echo "*** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point"
+ echo "*** to the installed location Also, make sure you have run ldconfig if that"
+ echo "*** is required on your system"
+ echo "***"
+ echo "*** If you have an old version installed, it is best to remove it, although"
+ echo "*** you may also be able to get things to work by modifying LD_LIBRARY_PATH"],
+ [ echo "*** The test program failed to compile or link. See the file config.log for the"
+ echo "*** exact error that occured. This usually means GSL was incorrectly installed"
+ echo "*** or that you have moved GSL since it was installed. In the latter case, you"
+ echo "*** may want to edit the gsl-config script: $GSL_CONFIG" ])
+ CFLAGS="$ac_save_CFLAGS"
+ LIBS="$ac_save_LIBS"
+ fi
+ fi
+# GSL_CFLAGS=""
+# GSL_LIBS=""
+ ifelse([$3], , :, [$3])
+ fi
+ AC_SUBST(GSL_CFLAGS)
+ AC_SUBST(GSL_LIBS)
+ AC_SUBST(GSL_LDFLAGS)
+ rm -f conf.gsltest
+])
+
+AU_ALIAS([AM_PATH_GSL], [AX_PATH_GSL])
diff --git a/make/m4/ax_prog_cc_mpi.m4 b/make/m4/ax_prog_cc_mpi.m4
new file mode 100644
index 0000000..091f51f
--- /dev/null
+++ b/make/m4/ax_prog_cc_mpi.m4
@@ -0,0 +1,171 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_prog_cc_mpi.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_PROG_CC_MPI([MPI-WANTED-TEST[, ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]])
+#
+# DESCRIPTION
+#
+# This macro tries to find out how to compile C programs that use MPI
+# (Message Passing Interface), a standard API for parallel process
+# communication (see http://www-unix.mcs.anl.gov/mpi/). The macro has to
+# be used instead of the standard macro AC_PROG_CC and will replace the
+# standard variable CC with the found compiler.
+#
+# MPI-WANTED-TEST is used to test whether MPI is actually wanted by the
+# user. If MPI-WANTED_TEST is omitted or if it succeeds, the macro will
+# try to find out how to use MPI, if it fails, the macro will call
+# AC_PROG_CC to find a standard C compiler instead.
+#
+# When MPI is found, ACTION-IF-FOUND will be executed, if MPI is not found
+# (or MPI-WANTED-TEST fails) ACTION-IF-NOT-FOUND is executed. If
+# ACTION-IF-FOUND is not set, the macro will define HAVE_MPI.
+#
+# The following example demonstrates usage of the macro:
+#
+# # If --with-mpi=auto is used, try to find MPI, but use standard C compiler if it is not found.
+# # If --with-mpi=yes is used, try to find MPI and fail if it isn't found.
+# # If --with-mpi=no is used, use a standard C compiler instead.
+# AC_ARG_WITH(mpi, [AS_HELP_STRING([--with-mpi],
+# [compile with MPI (parallelization) support. If none is found,
+# MPI is not used. Default: auto])
+# ],,[with_mpi=auto])
+# #
+# AX_PROG_CC_MPI([test x"$with_mpi" != xno],[use_mpi=yes],[
+# use_mpi=no
+# if test x"$with_mpi" = xyes; then
+# AC_MSG_FAILURE([MPI compiler requested, but couldn't use MPI.])
+# else
+# AC_MSG_WARN([No MPI compiler found, won't use MPI.])
+# fi
+# ])
+#
+# LICENSE
+#
+# Copyright (c) 2010,2011 Olaf Lenz <olenz at icp.uni-stuttgart.de>
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
+#
+# As a special exception, the respective Autoconf Macro's copyright owner
+# gives unlimited permission to copy, distribute and modify the configure
+# scripts that are the output of Autoconf when processing the Macro. You
+# need not follow the terms of the GNU General Public License when using
+# or distributing such scripts, even though portions of the text of the
+# Macro appear in them. The GNU General Public License (GPL) does govern
+# all other use of the material that constitutes the Autoconf Macro.
+#
+# This special exception to the GPL applies to versions of the Autoconf
+# Macro released by the Autoconf Archive. When you make and distribute a
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
+#serial 1
+
+AC_DEFUN([AX_PROG_CC_MPI], [
+AC_PREREQ(2.50)
+
+# Check for compiler
+# Needs to be split off into an extra macro to ensure right expansion
+# order.
+AC_REQUIRE([_AX_PROG_CC_MPI],[_AX_PROG_CC_MPI([$1])])
+
+AS_IF([test x"$_ax_prog_cc_mpi_mpi_wanted" = xno],
+ [ _ax_prog_cc_mpi_mpi_found=no ],
+ [
+ AC_LANG_PUSH([C])
+ # test whether MPI_Init is available
+ # We do not use AC_SEARCH_LIBS here, as it caches its outcome and
+ # thus disallows corresponding calls in the other AX_PROG_*_MPI
+ # macros.
+ for lib in NONE mpi mpich; do
+ save_LIBS=$LIBS
+ if test x"$lib" = xNONE; then
+ AC_MSG_CHECKING([for function MPI_Init])
+ else
+ AC_MSG_CHECKING([for function MPI_Init in -l$lib])
+ LIBS="-l$lib $LIBS"
+ fi
+ AC_LINK_IFELSE([AC_LANG_CALL([],[MPI_Init])],
+ [ _ax_prog_cc_mpi_mpi_found=yes ],
+ [ _ax_prog_cc_mpi_mpi_found=no ])
+ AC_MSG_RESULT($_ax_prog_cc_mpi_mpi_found)
+ if test "x$_ax_prog_cc_mpi_mpi_found" = "xyes"; then
+ break;
+ fi
+ LIBS=$save_LIBS
+ done
+
+ # Check for header
+ AS_IF([test x"$_ax_prog_cc_mpi_mpi_found" = xyes], [
+ AC_MSG_CHECKING([for mpi.h])
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([#include <mpi.h>])],
+ [ AC_MSG_RESULT(yes)],
+ [ AC_MSG_RESULT(no)
+ _ax_prog_cc_mpi_mpi_found=no
+ ])
+ ])
+ AC_LANG_POP([C])
+])
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+AS_IF([test x"$_ax_prog_cc_mpi_mpi_found" = xyes], [
+ ifelse([$2],,[AC_DEFINE(HAVE_MPI,1,[Define if you have the MPI library.])],[$2])
+ :
+],[
+ $3
+ :
+])
+
+])dnl AX_PROG_CC_MPI
+
+dnl _AX_PROG_CC_MPI is an internal macro required by AX_PROG_CC_MPI.
+dnl To ensure the right expansion order, the main function AX_PROG_CC_MPI
+dnl has to be split into two parts.
+dnl
+dnl Known MPI C compilers:
+dnl mpicc
+dnl mpixlc_r
+dnl mpixlc
+dnl hcc
+dnl mpxlc_r
+dnl mpxlc
+dnl sxmpicc NEC SX
+dnl mpifcc Fujitsu
+dnl mpgcc
+dnl mpcc
+dnl cmpicc
+dnl cc
+dnl
+AC_DEFUN([_AX_PROG_CC_MPI], [
+ AC_ARG_VAR(MPICC,[MPI C compiler command])
+ ifelse([$1],,[_ax_prog_cc_mpi_mpi_wanted=yes],[
+ AC_MSG_CHECKING([whether to compile using MPI])
+ if $1; then
+ _ax_prog_cc_mpi_mpi_wanted=yes
+ else
+ _ax_prog_cc_mpi_mpi_wanted=no
+ fi
+ AC_MSG_RESULT($_ax_prog_cc_mpi_mpi_wanted)
+ ])
+ if test x"$_ax_prog_cc_mpi_mpi_wanted" = xyes; then
+ if test -z "$CC" && test -n "$MPICC"; then
+ CC="$MPICC"
+ else
+ AC_CHECK_TOOLS([CC], [mpicc mpixlc_r mpixlc hcc mpxlc_r mpxlc sxmpicc mpifcc mpgcc mpcc cmpicc cc gcc])
+ fi
+ fi
+ AC_PROG_CC
+])dnl _AX_PROG_CC_MPI
diff --git a/make/m4/ax_prog_cxx_mpi.m4 b/make/m4/ax_prog_cxx_mpi.m4
new file mode 100644
index 0000000..0a81dae
--- /dev/null
+++ b/make/m4/ax_prog_cxx_mpi.m4
@@ -0,0 +1,178 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_prog_cxx_mpi.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_PROG_CXX_MPI([MPI-WANTED-TEST[, ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]])
+#
+# DESCRIPTION
+#
+# This macro tries to find out how to compile C++ programs that use MPI
+# (Message Passing Interface), a standard API for parallel process
+# communication (see http://www-unix.mcs.anl.gov/mpi/). The macro has to
+# be used instead of the standard macro AC_PROG_CXX and will replace the
+# standard variable CXX with the found compiler.
+#
+# MPI-WANTED-TEST is used to test whether MPI is actually wanted by the
+# user. If MPI-WANTED_TEST is omitted or if it succeeds, the macro will
+# try to find out how to use MPI, if it fails, the macro will call
+# AC_PROG_CC to find a standard C compiler instead.
+#
+# When MPI is found, ACTION-IF-FOUND will be executed, if MPI is not found
+# (or MPI-WANTED-TEST fails) ACTION-IF-NOT-FOUND is executed. If
+# ACTION-IF-FOUND is not set, the macro will define HAVE_MPI.
+#
+# The following example demonstrates usage of the macro:
+#
+# # If --with-mpi=auto is used, try to find MPI, but use standard C compiler if it is not found.
+# # If --with-mpi=yes is used, try to find MPI and fail if it isn't found.
+# # If --with-mpi=no is used, use a standard C compiler instead.
+# AC_ARG_WITH(mpi, [AS_HELP_STRING([--with-mpi],
+# [compile with MPI (parallelization) support. If none is found,
+# MPI is not used. Default: auto])
+# ],,[with_mpi=auto])
+#
+# AX_PROG_CXX_MPI([test x"$with_mpi" != xno],[use_mpi=yes],[
+# use_mpi=no
+# if test x"$with_mpi" = xyes; then
+# AC_MSG_FAILURE([MPI compiler requested, but couldn't use MPI.])
+# else
+# AC_MSG_WARN([No MPI compiler found, won't use MPI.])
+# fi
+# ])
+#
+# LICENSE
+#
+# Copyright (c) 2010,2011 Olaf Lenz <olenz at icp.uni-stuttgart.de>
+#
+# This program is free software: you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by the
+# Free Software Foundation, either version 3 of the License, or (at your
+# option) any later version.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General
+# Public License for more details.
+#
+# You should have received a copy of the GNU General Public License along
+# with this program. If not, see <http://www.gnu.org/licenses/>.
+#
+# As a special exception, the respective Autoconf Macro's copyright owner
+# gives unlimited permission to copy, distribute and modify the configure
+# scripts that are the output of Autoconf when processing the Macro. You
+# need not follow the terms of the GNU General Public License when using
+# or distributing such scripts, even though portions of the text of the
+# Macro appear in them. The GNU General Public License (GPL) does govern
+# all other use of the material that constitutes the Autoconf Macro.
+#
+# This special exception to the GPL applies to versions of the Autoconf
+# Macro released by the Autoconf Archive. When you make and distribute a
+# modified version of the Autoconf Macro, you may extend this special
+# exception to the GPL to apply to your modified version as well.
+
+#serial 2
+
+AC_DEFUN([AX_PROG_CXX_MPI], [
+AC_PREREQ(2.50)
+
+# Check for compiler
+# Needs to be split off into an extra macro to ensure right expansion
+# order.
+AC_REQUIRE([_AX_PROG_CXX_MPI],[_AX_PROG_CXX_MPI([$1])])
+
+AS_IF([test x"$_ax_prog_cxx_mpi_mpi_wanted" = xno],
+ [ _ax_prog_cxx_mpi_mpi_found=no ],
+ [
+ AC_LANG_PUSH([C++])
+
+ # test whether MPI_Init() is available
+ # We do not use AC_SEARCH_LIBS here, as it caches its outcome and
+ # thus disallows corresponding calls in the other AX_PROG_*_MPI
+ # macros.
+ for lib in NONE mpi mpich; do
+ save_LIBS=$LIBS
+ if test x"$lib" = xNONE; then
+ AC_MSG_CHECKING([for function MPI_Init])
+ else
+ AC_MSG_CHECKING([for function MPI_Init in -l$lib])
+ LIBS="-l$lib $LIBS"
+ fi
+ AC_LINK_IFELSE([
+ AC_LANG_PROGRAM([
+extern "C" { void MPI_Init(); }
+],[MPI_Init();])],
+ [ _ax_prog_cxx_mpi_mpi_found=yes ],
+ [ _ax_prog_cxx_mpi_mpi_found=no ])
+ AC_MSG_RESULT($_ax_prog_cxx_mpi_mpi_found)
+ if test "x$_ax_prog_cxx_mpi_mpi_found" = "xyes"; then
+ break;
+ fi
+ LIBS=$save_LIBS
+ done
+
+ # Check for header
+ AS_IF([test x"$_ax_prog_cxx_mpi_mpi_found" = xyes], [
+ AC_MSG_CHECKING([for mpi.h])
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([#include <mpi.h>])],
+ [ AC_MSG_RESULT(yes)],
+ [ AC_MSG_RESULT(no)
+ _ax_prog_cxx_mpi_mpi_found=no
+ ])
+ ])
+ AC_LANG_POP([C++])
+])
+
+# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND:
+AS_IF([test x"$_ax_prog_cxx_mpi_mpi_found" = xyes], [
+ ifelse([$2],,[AC_DEFINE(HAVE_MPI,1,[Define if you have the MPI library.])],[$2])
+ :
+],[
+ $3
+ :
+])
+
+])dnl AX_PROG_CXX_MPI
+
+dnl _AX_PROG_CXX_MPI is an internal macro required by AX_PROG_CXX_MPI.
+dnl To ensure the right expansion order, the main function AX_PROG_CXX_MPI
+dnl has to be split into two parts.
+dnl
+dnl Known MPI C++ compilers:
+dnl mpic++
+dnl mpicxx
+dnl mpiCC
+dnl sxmpic++ NEC SX
+dnl hcp
+dnl mpxlC_r
+dnl mpxlC
+dnl mpixlcxx_r
+dnl mpixlcxx
+dnl mpg++
+dnl mpc++
+dnl mpCC
+dnl cmpic++
+dnl mpiFCC Fujitsu
+dnl CC
+dnl
+AC_DEFUN([_AX_PROG_CXX_MPI], [
+ AC_ARG_VAR(MPICXX,[MPI C++ compiler command])
+ ifelse([$1],,[_ax_prog_cxx_mpi_mpi_wanted=yes],[
+ AC_MSG_CHECKING([whether to compile using MPI])
+ if $1; then
+ _ax_prog_cxx_mpi_mpi_wanted=yes
+ else
+ _ax_prog_cxx_mpi_mpi_wanted=no
+ fi
+ AC_MSG_RESULT($_ax_prog_cxx_mpi_mpi_wanted)
+ ])
+ if test x"$_ax_prog_cxx_mpi_mpi_wanted" = xyes; then
+ if test -z "$CXX" && test -n "$MPICXX"; then
+ CXX="$MPICXX"
+ else
+ AC_CHECK_TOOLS([CXX], [mpic++ mpicxx mpiCC sxmpic++ hcp mpxlC_r mpxlC mpixlcxx_r mpixlcxx mpg++ mpc++ mpCC cmpic++ mpiFCC CCicpc pgCC pathCC sxc++ xlC_r xlC bgxlC_r bgxlC openCC sunCC crayCC g++ c++ gpp aCC CC cxx cc++ cl.exe FCC KCC RCC])
+ fi
+ fi
+ AC_PROG_CXX
+])dnl _AX_PROG_CXX_MPI
diff --git a/make/m4/ax_prog_python_version.m4 b/make/m4/ax_prog_python_version.m4
new file mode 100644
index 0000000..420f724
--- /dev/null
+++ b/make/m4/ax_prog_python_version.m4
@@ -0,0 +1,71 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_prog_python_version.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_PROG_PYTHON_VERSION([VERSION],[ACTION-IF-TRUE],[ACTION-IF-FALSE])
+#
+# DESCRIPTION
+#
+# Makes sure that python supports the version indicated. If true the shell
+# commands in ACTION-IF-TRUE are executed. If not the shell commands in
+# ACTION-IF-FALSE are run. Note if $PYTHON is not set (for example by
+# running AC_CHECK_PROG or AC_PATH_PROG) the macro will fail.
+#
+# Example:
+#
+# AC_PATH_PROG([PYTHON],[python])
+# AX_PROG_PYTHON_VERSION([2.4.4],[ ... ],[ ... ])
+#
+# This will check to make sure that the python you have supports at least
+# version 2.4.4.
+#
+# NOTE: This macro uses the $PYTHON variable to perform the check.
+# AX_WITH_PYTHON can be used to set that variable prior to running this
+# macro. The $PYTHON_VERSION variable will be valorized with the detected
+# version.
+#
+# LICENSE
+#
+# Copyright (c) 2009 Francesco Salvestrini <salvestrini at users.sourceforge.net>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice
+# and this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+#serial 11
+
+AC_DEFUN([AX_PROG_PYTHON_VERSION],[
+ m4_version_prereq([2.60],[
+ AC_REQUIRE([AC_PROG_SED])
+ AC_REQUIRE([AC_PROG_GREP])
+ ],[
+ SED="sed"
+ GREP="grep"
+ ])
+
+ AS_IF([test -n "$PYTHON"],[
+ ax_python_version="$1"
+
+ AC_MSG_CHECKING([for python version])
+ changequote(<<,>>)
+ python_version=`$PYTHON -V 2>&1 | $GREP "^Python " | $SED -e 's/^.* \([0-9]*\.[0-9]*\.[0-9]*\)/\1/'`
+ changequote([,])
+ AC_MSG_RESULT($python_version)
+
+ AC_SUBST([PYTHON_VERSION],[$python_version])
+
+ AX_COMPARE_VERSION([$ax_python_version],[le],[$python_version],[
+ :
+ $2
+ ],[
+ :
+ $3
+ ])
+ ],[
+ AC_MSG_WARN([could not find the python interpreter])
+ $3
+ ])
+])
diff --git a/make/m4/ax_python_module.m4 b/make/m4/ax_python_module.m4
new file mode 100644
index 0000000..bd70a06
--- /dev/null
+++ b/make/m4/ax_python_module.m4
@@ -0,0 +1,49 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_python_module.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_PYTHON_MODULE(modname[, fatal])
+#
+# DESCRIPTION
+#
+# Checks for Python module.
+#
+# If fatal is non-empty then absence of a module will trigger an error.
+#
+# LICENSE
+#
+# Copyright (c) 2008 Andrew Collier <colliera at ukzn.ac.za>
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice
+# and this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+#serial 5
+
+AU_ALIAS([AC_PYTHON_MODULE], [AX_PYTHON_MODULE])
+AC_DEFUN([AX_PYTHON_MODULE],[
+ if test -z $PYTHON;
+ then
+ PYTHON="python"
+ fi
+ PYTHON_NAME=`basename $PYTHON`
+ AC_MSG_CHECKING($PYTHON_NAME module: $1)
+ $PYTHON -c "import $1" 2>/dev/null
+ if test $? -eq 0;
+ then
+ AC_MSG_RESULT(yes)
+ eval AS_TR_CPP(HAVE_PYMOD_$1)=yes
+ else
+ AC_MSG_RESULT(no)
+ eval AS_TR_CPP(HAVE_PYMOD_$1)=no
+ #
+ if test -n "$2"
+ then
+ AC_MSG_ERROR(failed to find required module $1)
+ exit 1
+ fi
+ fi
+])
diff --git a/make/m4/ax_soci_core.m4 b/make/m4/ax_soci_core.m4
new file mode 100644
index 0000000..db349d4
--- /dev/null
+++ b/make/m4/ax_soci_core.m4
@@ -0,0 +1,239 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_soci_base.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_SOCI_CORE([ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
+#
+# DESCRIPTION
+#
+# Test for the Boost C++ libraries of a particular version (or newer)
+#
+# If no path to the installed soci library is given the macro searchs
+# under /usr, /usr/local, /opt and /opt/local and evaluates the
+# $SOCI_ROOT environment variable. Further documentation is available at
+# <http://randspringer.de/soci/index.html>.
+#
+# This macro calls:
+#
+# AC_SUBST(SOCI_CPPFLAGS) / AC_SUBST(SOCI_LDFLAGS)
+#
+# And sets:
+#
+# HAVE_SOCI
+#
+# LICENSE
+#
+# Copyright (c) 2008 Thomas Porschberg <thomas at randspringer.de>
+# Copyright (c) 2009 Peter Adolphs
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice
+# and this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+#serial 20
+
+AC_DEFUN([AX_SOCI_CORE],
+[
+AC_ARG_WITH([soci],
+ [AS_HELP_STRING([--with-soci@<:@=ARG@:>@],
+ [use Boost library from a standard location (ARG=yes),
+ from the specified location (ARG=<path>),
+ or disable it (ARG=no)
+ @<:@ARG=yes@:>@ ])],
+ [
+ if test "$withval" = "no"; then
+ want_soci="no"
+ elif test "$withval" = "yes"; then
+ want_soci="yes"
+ ac_soci_path=""
+ else
+ want_soci="yes"
+ ac_soci_path="$withval"
+ fi
+ ],
+ [want_soci="yes"])
+
+
+AC_ARG_WITH([soci-libdir],
+ AS_HELP_STRING([--with-soci-libdir=LIB_DIR],
+ [Force given directory for soci libraries. Note that this will override library path detection, so use this parameter only if default library detection fails and you know exactly where your soci libraries are located.]),
+ [
+ if test -d "$withval"
+ then
+ ac_soci_lib_path="$withval"
+ else
+ AC_MSG_ERROR(--with-soci-libdir expected directory name)
+ fi
+ ],
+ [ac_soci_lib_path=""]
+)
+
+
+if test "x$want_soci" = "xyes"; then
+ AC_CHECK_LIB([dl], [main])
+ AC_MSG_CHECKING(for SOCI core libraries)
+ AC_REQUIRE([AC_PROG_CXX])
+ AC_LANG_PUSH(C++)
+ succeeded=no
+
+ dnl Check for lib64 in appropriate systems
+
+ libsubdirs="lib"
+ ax_arch=`uname -m`
+ if test $ax_arch = x86_64 -o $ax_arch = ppc64 -o $ax_arch = s390x -o $ax_arch = sparc64; then
+ libsubdirs="lib64 lib"
+ fi
+
+ dnl List all the standard search paths here
+ std_paths="/usr/local /usr /opt /opt/local"
+
+ if test "$ac_soci_path" != ""; then
+ if test -d "$ac_soci_path/include/soci" && test -r "$ac_soci_path/include/soci"; then
+ SOCI_CPPFLAGS="-I$ac_soci_path/include/soci"
+ else
+ SOCI_CPPFLAGS="-I$ac_soci_path/include"
+ fi
+
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $SOCI_CPPFLAGS"
+ export CPPFLAGS
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[@%:@include <soci.h>]], [[]])],[include_succeed=yes],[])
+
+ else
+ dnl First, check to see if the header is right there in the path!
+
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[@%:@include <soci.h>]], [[]])],[include_succeed=yes],[])
+
+ if test "x$include_succeed" != "xyes"; then
+ dnl Check the CPLUS_INCLUDE_PATH as well as /usr /usr/local /opt /opt/local
+ PATH_LIST="`echo $CPLUS_INCLUDE_PATH | sed 's/:/ /g' | sed 's/\/include\/* */ /g'` $std_paths"
+ for ac_soci_path_tmp in $PATH_LIST; do
+ if test -r "$ac_soci_path_tmp/include/soci/soci.h"; then
+ SOCI_CPPFLAGS="-I$ac_soci_path_tmp/include/soci"
+ break;
+ elif test -r "$ac_soci_path_tmp/include/soci.h"; then
+ SOCI_CPPFLAGS="-I$ac_soci_path_tmp/include"
+ break;
+ fi
+ done
+
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $SOCI_CPPFLAGS"
+ export CPPFLAGS
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[@%:@include <soci.h>]], [[]])],[include_succeed=yes],[])
+
+ fi
+ fi
+
+
+
+ dnl overwrite ld flags if we have required special directory with
+ dnl --with-soci-libdir parameter
+ SOCI_LDFLAGS=""
+ SOCI_LIB="-lsoci_core"
+
+ if test "$ac_soci_lib_path" != ""; then
+ SOCI_LDFLAGS="-L$ac_soci_lib_path"
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SOCI_LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+
+
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>],
+ [soci::session dummy])],
+ [link_succeed=yes],
+ []
+ )
+
+ else
+ if test "$ac_soci_path" != ""; then
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_path/$libsubdir/libsoci_"* >/dev/null 2>&1 ; then
+ SOCI_LDFLAGS="-L$ac_soci_path/$libsubdir"
+ break;
+ fi
+ done
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SOCI_LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+
+
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>],
+ [soci::session dummy])],
+ [link_succeed=yes],
+ []
+ )
+ fi
+
+ if test "x$link_succeed" != "xyes"; then
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+
+
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>],
+ [soci::session dummy])],
+ [link_succeed=yes],
+ []
+ )
+
+ if test "x$link_succeed" != "xyes"; then
+
+ dnl Check the LPATH as well as the standards above
+ PATH_LIST="`echo $LPATH | sed 's/:/ /g' | sed 's/\/lib\(64\)*\/* */ /g'` $std_paths"
+ for ac_soci_path_tmp in $PATH_LIST ; do
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_path_tmp/$libsubdir/libsoci_"* >/dev/null 2>&1 ; then
+ SOCI_LDFLAGS="-L$ac_soci_path_tmp/$libsubdir"
+ found_lib="yes"
+ break;
+ fi
+ done
+ if test "x$found_lib" = "xyes"; then break; fi
+ done
+ LDFLAGS="$LDFLAGS $SOCI_LDFLAGS $SOCI_LIB"
+ export LDFLAGS
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>],
+ [soci::session dummy])],
+ [link_succeed=yes],
+ []
+ )
+ fi
+ fi
+ fi
+
+
+
+ if test "x$include_succeed" = "xyes" -a "x$link_succeed" = "xyes"; then
+ AC_MSG_RESULT(yes)
+ AC_SUBST(SOCI_CPPFLAGS)
+ AC_SUBST(SOCI_LDFLAGS)
+ AC_SUBST(SOCI_LIB)
+ AC_DEFINE(HAVE_SOCI,,[define if the soci library is available])
+ ifelse([$1], , :, [$1])
+ else
+ AC_MSG_RESULT(no)
+ ifelse([$2], , :, [$2])
+ fi
+
+
+ AC_LANG_POP([C++])
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ LDFLAGS="$LDFLAGS_SAVED"
+fi
+
+])
diff --git a/make/m4/ax_soci_sqlite.m4 b/make/m4/ax_soci_sqlite.m4
new file mode 100644
index 0000000..76fa8d0
--- /dev/null
+++ b/make/m4/ax_soci_sqlite.m4
@@ -0,0 +1,280 @@
+# ===========================================================================
+# http://www.gnu.org/software/autoconf-archive/ax_soci_base.html
+# ===========================================================================
+#
+# SYNOPSIS
+#
+# AX_SOCI_SQLITE([ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
+#
+# DESCRIPTION
+#
+# Test for the Boost C++ libraries of a particular version (or newer)
+#
+# If no path to the installed soci library is given the macro searchs
+# under /usr, /usr/local, /opt and /opt/local and evaluates the
+# $SOCI_ROOT environment variable. Further documentation is available at
+# <http://randspringer.de/soci/index.html>.
+#
+# This macro calls:
+#
+# AC_SUBST(SOCI_SQLITE_CPPFLAGS) / AC_SUBST(SOCI_SQLITE_LDFLAGS)
+#
+# And sets:
+#
+# HAVE_SOCI_SQLITE
+#
+# LICENSE
+#
+# Copyright (c) 2008 Thomas Porschberg <thomas at randspringer.de>
+# Copyright (c) 2009 Peter Adolphs
+#
+# Copying and distribution of this file, with or without modification, are
+# permitted in any medium without royalty provided the copyright notice
+# and this notice are preserved. This file is offered as-is, without any
+# warranty.
+
+#serial 20
+
+AC_DEFUN([AX_SOCI_SQLITE],
+[
+AC_ARG_WITH([soci-sqlite],
+ [AS_HELP_STRING([--with-soci-sqlite@<:@=ARG@:>@],
+ [use SOCI SQLite backend from a standard location (ARG=yes),
+ from the specified location (ARG=<path>),
+ or disable it (ARG=no)
+ @<:@ARG=yes@:>@ ])],
+ [
+ if test "$withval" = "no"; then
+ want_soci_sqlite="no"
+ elif test "$withval" = "yes"; then
+ want_soci_sqlite="yes"
+ ac_soci_sqlite_path=""
+ else
+ want_soci_sqlite="yes"
+ ac_soci_sqlite_path="$withval"
+ fi
+ ],
+ [want_soci_sqlite="yes"])
+
+
+AC_ARG_WITH([soci-sqlite-libdir],
+ AS_HELP_STRING([--with-soci-sqlite-libdir=LIB_DIR],
+ [Force given directory for soci libraries. Note that this will override library path detection, so use this parameter only if default library detection fails and you know exactly where your soci libraries are located.]),
+ [
+ if test -d "$withval"
+ then
+ ac_soci_sqlite_lib_path="$withval"
+ else
+ AC_MSG_ERROR(--with-soci-sqlite-libdir expected directory name)
+ fi
+ ],
+ [ac_soci_sqlite_lib_path=""]
+)
+
+
+if test "x$want_soci_sqlite" = "xyes"; then
+
+ AC_MSG_CHECKING(for SOCI SQLite backend)
+
+ AC_TRY_CPP([#ifndef HAVE_SQLITE
+ #error "Library not found"
+ #endif
+ ],[have_sqlite=yes],[have_sqlite=no])
+
+ if test "x$have_sqlite" = "xno"; then
+ PKG_CHECK_MODULES([SQLITE],[sqlite3 >= 3.3],
+ [have_sqlite=yes; AC_DEFINE([HAVE_SQLITE],[],[SQLite is available])],
+ [have_sqlite=no; AC_DEFINE([NO_SQLITE],[],[No SQLite library available])])
+ fi
+
+ # Only bother if we actually HAVE SQLite, o/w it's pointless!
+ if test "x$have_sqlite" = "xyes"; then
+
+ AC_REQUIRE([AC_PROG_CXX])
+ AC_LANG_PUSH(C++)
+ include_succeed=no
+ link_succeed=no
+
+ dnl Check for lib64 in appropriate systems
+
+ libsubdirs="lib"
+ ax_arch=`uname -m`
+ if test $ax_arch = x86_64 -o $ax_arch = ppc64 -o $ax_arch = s390x -o $ax_arch = sparc64; then
+ libsubdirs="lib64 lib"
+ fi
+
+ dnl List all the standard search paths here
+ std_paths="/usr/local /usr /opt /opt/local"
+
+ if test "$ac_soci_sqlite_path" != ""; then
+ if test -d "$ac_soci_sqlite_path/include/soci/sqlite3" && test -r "$ac_soci_sqlite_path/include/soci/sqlite3"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path/include/soci/sqlite3"
+ else
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path/include"
+ fi
+ CPPFLAGS_SAVED="$CPPFLAGS"
+ CPPFLAGS="$CPPFLAGS $SQLITE_CPPFLAGS $SOCI_CPPFLAGS $SOCI_SQLITE_CPPFLAGS"
+ export CPPFLAGS
+
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[@%:@include <soci.h>
+ @%:@include <soci-sqlite3.h>
+ ]], [[]])],[include_succeed=yes],[])
+ else
+
+ SOCI_SQLITE_CPPFLAGS=""
+ CPPFLAGS_SAVED="$CPPFLAGS"
+
+ dnl Check for location relative to SOCI_CPPFLAGS
+ if test "$SOCI_CPPFLAGS" != ""; then
+ ac_soci_incl_dir="`echo $SOCI_CPPFLAGS | sed 's/^-I//g'`"
+ if test -r "$ac_soci_incl_dir/sqlite3/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_incl_dir/sqlite3"
+ elif test -r "$ac_soci_incl_dir/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_incl_dir"
+ else
+ SOCI_SQLITE_CPPFLAGS=""
+ fi
+ fi
+
+ dnl Check for the location now
+ CPPFLAGS="$CPPFLAGS_SAVED $SQLITE_CPPFLAGS $SOCI_CPPFLAGS $SOCI_SQLITE_CPPFLAGS"
+ export CPPFLAGS
+
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[@%:@include <soci.h>
+ @%:@include <soci-sqlite3.h>
+ ]], [[]])],[include_succeed=yes],[])
+
+ if test "x$include_succeed" != "xyes"; then
+ dnl Check the CPLUS_INCLUDE_PATH as well as /usr /usr/local /opt /opt/local
+ PATH_LIST="`echo $CPLUS_INCLUDE_PATH | sed 's/:/ /g' | sed 's/\/include\/* */ /g'` $std_paths"
+ for ac_soci_path_tmp in $PATH_LIST; do
+ if test -r "$ac_soci_sqlite_path_tmp/include/soci/sqlite3/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path_tmp/include/soci/sqlite3"
+ break;
+ elif test -r "$ac_soci_sqlite_path_tmp/include/soci/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path_tmp/include/soci"
+ break;
+ elif test -r "$ac_soci_sqlite_path_tmp/include/soci-sqlite3.h"; then
+ SOCI_SQLITE_CPPFLAGS="-I$ac_soci_sqlite_path_tmp/include"
+ break;
+ fi
+ done
+ CPPFLAGS="$CPPFLAGS_SAVED $SQLITE_CPPFLAGS $SOCI_CPPFLAGS $SOCI_SQLITE_CPPFLAGS"
+ export CPPFLAGS
+ AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[@%:@include <soci.h>
+ @%:@include <soci-sqlite3.h>
+ ]], [[]])],[include_succeed=yes],[])
+ fi
+ fi
+
+ SOCI_SQLITE_LDFLAGS=""
+ SOCI_SQLITE_LIB="-lsoci_sqlite3"
+
+ dnl overwrite ld flags if we have required special directory with
+ dnl --with-soci-libdir parameter
+ if test "$ac_soci_sqlite_lib_path" != ""; then
+ SOCI_SQLITE_LDFLAGS="-L$ac_soci_sqlite_lib_path"
+
+ LDFLAGS_SAVED="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>
+ #include <soci-sqlite3.h>],
+ [soci::session dummy(soci::sqlite3,"")])],
+ [link_succeed=yes],
+ []
+ )
+ else
+
+
+ LDFLAGS_SAVED="$LDFLAGS"
+
+ # Check for SQLITE relative to sqlite path
+ if test "$ac_soci_sqlite_path" != ""; then
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_path/$libsubdir/libsoci_sqlite3"* >/dev/null 2>&1 ; then
+ SOCI_SQLITE_LDFLAGS="-L$ac_soci_path/$libsubdir"
+ break;
+ fi
+ done
+
+ LDFLAGS="$LDFLAGS_SAVED $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>
+ #include <soci-sqlite3.h>],
+ [soci::session dummy(soci::sqlite3,"")])],
+ [link_succeed=yes],
+ []
+ )
+ fi
+
+ if test "x$link_succeed" != "xyes"; then
+
+ LDFLAGS="$LDFLAGS_SAVED $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+
+
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>
+ #include <soci-sqlite3.h>],
+ [soci::session dummy(soci::sqlite3,"")])],
+ [link_succeed=yes],
+ []
+ )
+
+ if test "x$link_succeed" != "xyes"; then
+
+ dnl Check the LPATH as well as the standards above
+ for ac_soci_sqlite_path_tmp in `echo $LPATH | sed 's/:/ /g' | sed 's/\/lib\(64\)*\/* */ /g'` "$std_paths" ; do
+ for libsubdir in $libsubdirs ; do
+ if ls "$ac_soci_sqlite_path_tmp/$libsubdir/libsoci_sqlite3"* >/dev/null 2>&1 ; then
+ SOCI_SQLITE_LDFLAGS="-L$ac_soci_sqlite_path_tmp/$libsubdir"
+ found_lib="yes"
+ break;
+ fi
+ done
+ if test "x$found_lib" = "xyes"; then break; fi
+ done
+
+ LDFLAGS="$LDFLAGS_SAVED $SQLITE_LDFLAGS $SOCI_LDFLAGS $SOCI_LIB $SOCI_SQLITE_LDFLAGS $SOCI_SQLITE_LIB"
+ export LDFLAGS
+ dnl Check if we can link against the SOCI libraries
+ AC_LINK_IFELSE(
+ [AC_LANG_PROGRAM([#include <soci.h>
+ #include <soci-sqlite3.h>],
+ [soci::session dummy(soci::sqlite3,"")])],
+ [link_succeed=yes],
+ []
+ )
+
+ fi
+ fi
+ fi
+ fi
+
+
+ if test "x$include_succeed" = "xyes" && test "x$link_succeed" = "xyes"; then
+ AC_MSG_RESULT(yes)
+ AC_SUBST(SOCI_SQLITE_CPPFLAGS)
+ AC_SUBST(SOCI_SQLITE_LDFLAGS)
+ AC_SUBST(SOCI_SQLITE_LIB)
+ AC_DEFINE(HAVE_SOCI_SQLITE,,[define if the soci SQLite backend is available])
+ ifelse([$1], , :, [$1])
+ else
+ AC_MSG_RESULT(no)
+ ifelse([$2], , :, [$2])
+ fi
+
+ AC_LANG_POP([C++])
+ CPPFLAGS="$CPPFLAGS_SAVED"
+ LDFLAGS="$LDFLAGS_SAVED"
+fi
+
+])
diff --git a/make/m4/libtool.m4 b/make/m4/libtool.m4
new file mode 100644
index 0000000..671cde1
--- /dev/null
+++ b/make/m4/libtool.m4
@@ -0,0 +1,7360 @@
+# libtool.m4 - Configure libtool for the host system. -*-Autoconf-*-
+#
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005,
+# 2006, 2007, 2008 Free Software Foundation, Inc.
+# Written by Gordon Matzigkeit, 1996
+#
+# This file is free software; the Free Software Foundation gives
+# unlimited permission to copy and/or distribute it, with or without
+# modifications, as long as this notice is preserved.
+
+m4_define([_LT_COPYING], [dnl
+# Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2003, 2004, 2005,
+# 2006, 2007, 2008 Free Software Foundation, Inc.
+# Written by Gordon Matzigkeit, 1996
+#
+# This file is part of GNU Libtool.
+#
+# GNU Libtool is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License as
+# published by the Free Software Foundation; either version 2 of
+# the License, or (at your option) any later version.
+#
+# As a special exception to the GNU General Public License,
+# if you distribute this file as part of a program or library that
+# is built using GNU Libtool, you may include this file under the
+# same distribution terms that you use for the rest of that program.
+#
+# GNU Libtool is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with GNU Libtool; see the file COPYING. If not, a copy
+# can be downloaded from http://www.gnu.org/licenses/gpl.html, or
+# obtained by writing to the Free Software Foundation, Inc.,
+# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+])
+
+# serial 56 LT_INIT
+
+
+# LT_PREREQ(VERSION)
+# ------------------
+# Complain and exit if this libtool version is less that VERSION.
+m4_defun([LT_PREREQ],
+[m4_if(m4_version_compare(m4_defn([LT_PACKAGE_VERSION]), [$1]), -1,
+ [m4_default([$3],
+ [m4_fatal([Libtool version $1 or higher is required],
+ 63)])],
+ [$2])])
+
+
+# _LT_CHECK_BUILDDIR
+# ------------------
+# Complain if the absolute build directory name contains unusual characters
+m4_defun([_LT_CHECK_BUILDDIR],
+[case `pwd` in
+ *\ * | *\ *)
+ AC_MSG_WARN([Libtool does not cope well with whitespace in `pwd`]) ;;
+esac
+])
+
+
+# LT_INIT([OPTIONS])
+# ------------------
+AC_DEFUN([LT_INIT],
+[AC_PREREQ([2.58])dnl We use AC_INCLUDES_DEFAULT
+AC_BEFORE([$0], [LT_LANG])dnl
+AC_BEFORE([$0], [LT_OUTPUT])dnl
+AC_BEFORE([$0], [LTDL_INIT])dnl
+m4_require([_LT_CHECK_BUILDDIR])dnl
+
+dnl Autoconf doesn't catch unexpanded LT_ macros by default:
+m4_pattern_forbid([^_?LT_[A-Z_]+$])dnl
+m4_pattern_allow([^(_LT_EOF|LT_DLGLOBAL|LT_DLLAZY_OR_NOW|LT_MULTI_MODULE)$])dnl
+dnl aclocal doesn't pull ltoptions.m4, ltsugar.m4, or ltversion.m4
+dnl unless we require an AC_DEFUNed macro:
+AC_REQUIRE([LTOPTIONS_VERSION])dnl
+AC_REQUIRE([LTSUGAR_VERSION])dnl
+AC_REQUIRE([LTVERSION_VERSION])dnl
+AC_REQUIRE([LTOBSOLETE_VERSION])dnl
+m4_require([_LT_PROG_LTMAIN])dnl
+
+dnl Parse OPTIONS
+_LT_SET_OPTIONS([$0], [$1])
+
+# This can be used to rebuild libtool when needed
+LIBTOOL_DEPS="$ltmain"
+
+# Always use our own libtool.
+LIBTOOL='$(SHELL) $(top_builddir)/libtool'
+AC_SUBST(LIBTOOL)dnl
+
+_LT_SETUP
+
+# Only expand once:
+m4_define([LT_INIT])
+])# LT_INIT
+
+# Old names:
+AU_ALIAS([AC_PROG_LIBTOOL], [LT_INIT])
+AU_ALIAS([AM_PROG_LIBTOOL], [LT_INIT])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_PROG_LIBTOOL], [])
+dnl AC_DEFUN([AM_PROG_LIBTOOL], [])
+
+
+# _LT_CC_BASENAME(CC)
+# -------------------
+# Calculate cc_basename. Skip known compiler wrappers and cross-prefix.
+m4_defun([_LT_CC_BASENAME],
+[for cc_temp in $1""; do
+ case $cc_temp in
+ compile | *[[\\/]]compile | ccache | *[[\\/]]ccache ) ;;
+ distcc | *[[\\/]]distcc | purify | *[[\\/]]purify ) ;;
+ \-*) ;;
+ *) break;;
+ esac
+done
+cc_basename=`$ECHO "X$cc_temp" | $Xsed -e 's%.*/%%' -e "s%^$host_alias-%%"`
+])
+
+
+# _LT_FILEUTILS_DEFAULTS
+# ----------------------
+# It is okay to use these file commands and assume they have been set
+# sensibly after `m4_require([_LT_FILEUTILS_DEFAULTS])'.
+m4_defun([_LT_FILEUTILS_DEFAULTS],
+[: ${CP="cp -f"}
+: ${MV="mv -f"}
+: ${RM="rm -f"}
+])# _LT_FILEUTILS_DEFAULTS
+
+
+# _LT_SETUP
+# ---------
+m4_defun([_LT_SETUP],
+[AC_REQUIRE([AC_CANONICAL_HOST])dnl
+AC_REQUIRE([AC_CANONICAL_BUILD])dnl
+_LT_DECL([], [host_alias], [0], [The host system])dnl
+_LT_DECL([], [host], [0])dnl
+_LT_DECL([], [host_os], [0])dnl
+dnl
+_LT_DECL([], [build_alias], [0], [The build system])dnl
+_LT_DECL([], [build], [0])dnl
+_LT_DECL([], [build_os], [0])dnl
+dnl
+AC_REQUIRE([AC_PROG_CC])dnl
+AC_REQUIRE([LT_PATH_LD])dnl
+AC_REQUIRE([LT_PATH_NM])dnl
+dnl
+AC_REQUIRE([AC_PROG_LN_S])dnl
+test -z "$LN_S" && LN_S="ln -s"
+_LT_DECL([], [LN_S], [1], [Whether we need soft or hard links])dnl
+dnl
+AC_REQUIRE([LT_CMD_MAX_LEN])dnl
+_LT_DECL([objext], [ac_objext], [0], [Object file suffix (normally "o")])dnl
+_LT_DECL([], [exeext], [0], [Executable file suffix (normally "")])dnl
+dnl
+m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+m4_require([_LT_CHECK_SHELL_FEATURES])dnl
+m4_require([_LT_CMD_RELOAD])dnl
+m4_require([_LT_CHECK_MAGIC_METHOD])dnl
+m4_require([_LT_CMD_OLD_ARCHIVE])dnl
+m4_require([_LT_CMD_GLOBAL_SYMBOLS])dnl
+
+_LT_CONFIG_LIBTOOL_INIT([
+# See if we are running on zsh, and set the options which allow our
+# commands through without removal of \ escapes INIT.
+if test -n "\${ZSH_VERSION+set}" ; then
+ setopt NO_GLOB_SUBST
+fi
+])
+if test -n "${ZSH_VERSION+set}" ; then
+ setopt NO_GLOB_SUBST
+fi
+
+_LT_CHECK_OBJDIR
+
+m4_require([_LT_TAG_COMPILER])dnl
+_LT_PROG_ECHO_BACKSLASH
+
+case $host_os in
+aix3*)
+ # AIX sometimes has problems with the GCC collect2 program. For some
+ # reason, if we set the COLLECT_NAMES environment variable, the problems
+ # vanish in a puff of smoke.
+ if test "X${COLLECT_NAMES+set}" != Xset; then
+ COLLECT_NAMES=
+ export COLLECT_NAMES
+ fi
+ ;;
+esac
+
+# Sed substitution that helps us do robust quoting. It backslashifies
+# metacharacters that are still active within double-quoted strings.
+sed_quote_subst='s/\([["`$\\]]\)/\\\1/g'
+
+# Same as above, but do not quote variable references.
+double_quote_subst='s/\([["`\\]]\)/\\\1/g'
+
+# Sed substitution to delay expansion of an escaped shell variable in a
+# double_quote_subst'ed string.
+delay_variable_subst='s/\\\\\\\\\\\$/\\\\\\$/g'
+
+# Sed substitution to delay expansion of an escaped single quote.
+delay_single_quote_subst='s/'\''/'\'\\\\\\\'\''/g'
+
+# Sed substitution to avoid accidental globbing in evaled expressions
+no_glob_subst='s/\*/\\\*/g'
+
+# Global variables:
+ofile=libtool
+can_build_shared=yes
+
+# All known linkers require a `.a' archive for static linking (except MSVC,
+# which needs '.lib').
+libext=a
+
+with_gnu_ld="$lt_cv_prog_gnu_ld"
+
+old_CC="$CC"
+old_CFLAGS="$CFLAGS"
+
+# Set sane defaults for various variables
+test -z "$CC" && CC=cc
+test -z "$LTCC" && LTCC=$CC
+test -z "$LTCFLAGS" && LTCFLAGS=$CFLAGS
+test -z "$LD" && LD=ld
+test -z "$ac_objext" && ac_objext=o
+
+_LT_CC_BASENAME([$compiler])
+
+# Only perform the check for file, if the check method requires it
+test -z "$MAGIC_CMD" && MAGIC_CMD=file
+case $deplibs_check_method in
+file_magic*)
+ if test "$file_magic_cmd" = '$MAGIC_CMD'; then
+ _LT_PATH_MAGIC
+ fi
+ ;;
+esac
+
+# Use C for the default configuration in the libtool script
+LT_SUPPORTED_TAG([CC])
+_LT_LANG_C_CONFIG
+_LT_LANG_DEFAULT_CONFIG
+_LT_CONFIG_COMMANDS
+])# _LT_SETUP
+
+
+# _LT_PROG_LTMAIN
+# ---------------
+# Note that this code is called both from `configure', and `config.status'
+# now that we use AC_CONFIG_COMMANDS to generate libtool. Notably,
+# `config.status' has no value for ac_aux_dir unless we are using Automake,
+# so we pass a copy along to make sure it has a sensible value anyway.
+m4_defun([_LT_PROG_LTMAIN],
+[m4_ifdef([AC_REQUIRE_AUX_FILE], [AC_REQUIRE_AUX_FILE([ltmain.sh])])dnl
+_LT_CONFIG_LIBTOOL_INIT([ac_aux_dir='$ac_aux_dir'])
+ltmain="$ac_aux_dir/ltmain.sh"
+])# _LT_PROG_LTMAIN
+
+
+## ------------------------------------- ##
+## Accumulate code for creating libtool. ##
+## ------------------------------------- ##
+
+# So that we can recreate a full libtool script including additional
+# tags, we accumulate the chunks of code to send to AC_CONFIG_COMMANDS
+# in macros and then make a single call at the end using the `libtool'
+# label.
+
+
+# _LT_CONFIG_LIBTOOL_INIT([INIT-COMMANDS])
+# ----------------------------------------
+# Register INIT-COMMANDS to be passed to AC_CONFIG_COMMANDS later.
+m4_define([_LT_CONFIG_LIBTOOL_INIT],
+[m4_ifval([$1],
+ [m4_append([_LT_OUTPUT_LIBTOOL_INIT],
+ [$1
+])])])
+
+# Initialize.
+m4_define([_LT_OUTPUT_LIBTOOL_INIT])
+
+
+# _LT_CONFIG_LIBTOOL([COMMANDS])
+# ------------------------------
+# Register COMMANDS to be passed to AC_CONFIG_COMMANDS later.
+m4_define([_LT_CONFIG_LIBTOOL],
+[m4_ifval([$1],
+ [m4_append([_LT_OUTPUT_LIBTOOL_COMMANDS],
+ [$1
+])])])
+
+# Initialize.
+m4_define([_LT_OUTPUT_LIBTOOL_COMMANDS])
+
+
+# _LT_CONFIG_SAVE_COMMANDS([COMMANDS], [INIT_COMMANDS])
+# -----------------------------------------------------
+m4_defun([_LT_CONFIG_SAVE_COMMANDS],
+[_LT_CONFIG_LIBTOOL([$1])
+_LT_CONFIG_LIBTOOL_INIT([$2])
+])
+
+
+# _LT_FORMAT_COMMENT([COMMENT])
+# -----------------------------
+# Add leading comment marks to the start of each line, and a trailing
+# full-stop to the whole comment if one is not present already.
+m4_define([_LT_FORMAT_COMMENT],
+[m4_ifval([$1], [
+m4_bpatsubst([m4_bpatsubst([$1], [^ *], [# ])],
+ [['`$\]], [\\\&])]m4_bmatch([$1], [[!?.]$], [], [.])
+)])
+
+
+
+## ------------------------ ##
+## FIXME: Eliminate VARNAME ##
+## ------------------------ ##
+
+
+# _LT_DECL([CONFIGNAME], VARNAME, VALUE, [DESCRIPTION], [IS-TAGGED?])
+# -------------------------------------------------------------------
+# CONFIGNAME is the name given to the value in the libtool script.
+# VARNAME is the (base) name used in the configure script.
+# VALUE may be 0, 1 or 2 for a computed quote escaped value based on
+# VARNAME. Any other value will be used directly.
+m4_define([_LT_DECL],
+[lt_if_append_uniq([lt_decl_varnames], [$2], [, ],
+ [lt_dict_add_subkey([lt_decl_dict], [$2], [libtool_name],
+ [m4_ifval([$1], [$1], [$2])])
+ lt_dict_add_subkey([lt_decl_dict], [$2], [value], [$3])
+ m4_ifval([$4],
+ [lt_dict_add_subkey([lt_decl_dict], [$2], [description], [$4])])
+ lt_dict_add_subkey([lt_decl_dict], [$2],
+ [tagged?], [m4_ifval([$5], [yes], [no])])])
+])
+
+
+# _LT_TAGDECL([CONFIGNAME], VARNAME, VALUE, [DESCRIPTION])
+# --------------------------------------------------------
+m4_define([_LT_TAGDECL], [_LT_DECL([$1], [$2], [$3], [$4], [yes])])
+
+
+# lt_decl_tag_varnames([SEPARATOR], [VARNAME1...])
+# ------------------------------------------------
+m4_define([lt_decl_tag_varnames],
+[_lt_decl_filter([tagged?], [yes], $@)])
+
+
+# _lt_decl_filter(SUBKEY, VALUE, [SEPARATOR], [VARNAME1..])
+# ---------------------------------------------------------
+m4_define([_lt_decl_filter],
+[m4_case([$#],
+ [0], [m4_fatal([$0: too few arguments: $#])],
+ [1], [m4_fatal([$0: too few arguments: $#: $1])],
+ [2], [lt_dict_filter([lt_decl_dict], [$1], [$2], [], lt_decl_varnames)],
+ [3], [lt_dict_filter([lt_decl_dict], [$1], [$2], [$3], lt_decl_varnames)],
+ [lt_dict_filter([lt_decl_dict], $@)])[]dnl
+])
+
+
+# lt_decl_quote_varnames([SEPARATOR], [VARNAME1...])
+# --------------------------------------------------
+m4_define([lt_decl_quote_varnames],
+[_lt_decl_filter([value], [1], $@)])
+
+
+# lt_decl_dquote_varnames([SEPARATOR], [VARNAME1...])
+# ---------------------------------------------------
+m4_define([lt_decl_dquote_varnames],
+[_lt_decl_filter([value], [2], $@)])
+
+
+# lt_decl_varnames_tagged([SEPARATOR], [VARNAME1...])
+# ---------------------------------------------------
+m4_define([lt_decl_varnames_tagged],
+[m4_assert([$# <= 2])dnl
+_$0(m4_quote(m4_default([$1], [[, ]])),
+ m4_ifval([$2], [[$2]], [m4_dquote(lt_decl_tag_varnames)]),
+ m4_split(m4_normalize(m4_quote(_LT_TAGS)), [ ]))])
+m4_define([_lt_decl_varnames_tagged],
+[m4_ifval([$3], [lt_combine([$1], [$2], [_], $3)])])
+
+
+# lt_decl_all_varnames([SEPARATOR], [VARNAME1...])
+# ------------------------------------------------
+m4_define([lt_decl_all_varnames],
+[_$0(m4_quote(m4_default([$1], [[, ]])),
+ m4_if([$2], [],
+ m4_quote(lt_decl_varnames),
+ m4_quote(m4_shift($@))))[]dnl
+])
+m4_define([_lt_decl_all_varnames],
+[lt_join($@, lt_decl_varnames_tagged([$1],
+ lt_decl_tag_varnames([[, ]], m4_shift($@))))dnl
+])
+
+
+# _LT_CONFIG_STATUS_DECLARE([VARNAME])
+# ------------------------------------
+# Quote a variable value, and forward it to `config.status' so that its
+# declaration there will have the same value as in `configure'. VARNAME
+# must have a single quote delimited value for this to work.
+m4_define([_LT_CONFIG_STATUS_DECLARE],
+[$1='`$ECHO "X$][$1" | $Xsed -e "$delay_single_quote_subst"`'])
+
+
+# _LT_CONFIG_STATUS_DECLARATIONS
+# ------------------------------
+# We delimit libtool config variables with single quotes, so when
+# we write them to config.status, we have to be sure to quote all
+# embedded single quotes properly. In configure, this macro expands
+# each variable declared with _LT_DECL (and _LT_TAGDECL) into:
+#
+# <var>='`$ECHO "X$<var>" | $Xsed -e "$delay_single_quote_subst"`'
+m4_defun([_LT_CONFIG_STATUS_DECLARATIONS],
+[m4_foreach([_lt_var], m4_quote(lt_decl_all_varnames),
+ [m4_n([_LT_CONFIG_STATUS_DECLARE(_lt_var)])])])
+
+
+# _LT_LIBTOOL_TAGS
+# ----------------
+# Output comment and list of tags supported by the script
+m4_defun([_LT_LIBTOOL_TAGS],
+[_LT_FORMAT_COMMENT([The names of the tagged configurations supported by this script])dnl
+available_tags="_LT_TAGS"dnl
+])
+
+
+# _LT_LIBTOOL_DECLARE(VARNAME, [TAG])
+# -----------------------------------
+# Extract the dictionary values for VARNAME (optionally with TAG) and
+# expand to a commented shell variable setting:
+#
+# # Some comment about what VAR is for.
+# visible_name=$lt_internal_name
+m4_define([_LT_LIBTOOL_DECLARE],
+[_LT_FORMAT_COMMENT(m4_quote(lt_dict_fetch([lt_decl_dict], [$1],
+ [description])))[]dnl
+m4_pushdef([_libtool_name],
+ m4_quote(lt_dict_fetch([lt_decl_dict], [$1], [libtool_name])))[]dnl
+m4_case(m4_quote(lt_dict_fetch([lt_decl_dict], [$1], [value])),
+ [0], [_libtool_name=[$]$1],
+ [1], [_libtool_name=$lt_[]$1],
+ [2], [_libtool_name=$lt_[]$1],
+ [_libtool_name=lt_dict_fetch([lt_decl_dict], [$1], [value])])[]dnl
+m4_ifval([$2], [_$2])[]m4_popdef([_libtool_name])[]dnl
+])
+
+
+# _LT_LIBTOOL_CONFIG_VARS
+# -----------------------
+# Produce commented declarations of non-tagged libtool config variables
+# suitable for insertion in the LIBTOOL CONFIG section of the `libtool'
+# script. Tagged libtool config variables (even for the LIBTOOL CONFIG
+# section) are produced by _LT_LIBTOOL_TAG_VARS.
+m4_defun([_LT_LIBTOOL_CONFIG_VARS],
+[m4_foreach([_lt_var],
+ m4_quote(_lt_decl_filter([tagged?], [no], [], lt_decl_varnames)),
+ [m4_n([_LT_LIBTOOL_DECLARE(_lt_var)])])])
+
+
+# _LT_LIBTOOL_TAG_VARS(TAG)
+# -------------------------
+m4_define([_LT_LIBTOOL_TAG_VARS],
+[m4_foreach([_lt_var], m4_quote(lt_decl_tag_varnames),
+ [m4_n([_LT_LIBTOOL_DECLARE(_lt_var, [$1])])])])
+
+
+# _LT_TAGVAR(VARNAME, [TAGNAME])
+# ------------------------------
+m4_define([_LT_TAGVAR], [m4_ifval([$2], [$1_$2], [$1])])
+
+
+# _LT_CONFIG_COMMANDS
+# -------------------
+# Send accumulated output to $CONFIG_STATUS. Thanks to the lists of
+# variables for single and double quote escaping we saved from calls
+# to _LT_DECL, we can put quote escaped variables declarations
+# into `config.status', and then the shell code to quote escape them in
+# for loops in `config.status'. Finally, any additional code accumulated
+# from calls to _LT_CONFIG_LIBTOOL_INIT is expanded.
+m4_defun([_LT_CONFIG_COMMANDS],
+[AC_PROVIDE_IFELSE([LT_OUTPUT],
+ dnl If the libtool generation code has been placed in $CONFIG_LT,
+ dnl instead of duplicating it all over again into config.status,
+ dnl then we will have config.status run $CONFIG_LT later, so it
+ dnl needs to know what name is stored there:
+ [AC_CONFIG_COMMANDS([libtool],
+ [$SHELL $CONFIG_LT || AS_EXIT(1)], [CONFIG_LT='$CONFIG_LT'])],
+ dnl If the libtool generation code is destined for config.status,
+ dnl expand the accumulated commands and init code now:
+ [AC_CONFIG_COMMANDS([libtool],
+ [_LT_OUTPUT_LIBTOOL_COMMANDS], [_LT_OUTPUT_LIBTOOL_COMMANDS_INIT])])
+])#_LT_CONFIG_COMMANDS
+
+
+# Initialize.
+m4_define([_LT_OUTPUT_LIBTOOL_COMMANDS_INIT],
+[
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+sed_quote_subst='$sed_quote_subst'
+double_quote_subst='$double_quote_subst'
+delay_variable_subst='$delay_variable_subst'
+_LT_CONFIG_STATUS_DECLARATIONS
+LTCC='$LTCC'
+LTCFLAGS='$LTCFLAGS'
+compiler='$compiler_DEFAULT'
+
+# Quote evaled strings.
+for var in lt_decl_all_varnames([[ \
+]], lt_decl_quote_varnames); do
+ case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
+ *[[\\\\\\\`\\"\\\$]]*)
+ eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$sed_quote_subst\\"\\\`\\\\\\""
+ ;;
+ *)
+ eval "lt_\$var=\\\\\\"\\\$\$var\\\\\\""
+ ;;
+ esac
+done
+
+# Double-quote double-evaled strings.
+for var in lt_decl_all_varnames([[ \
+]], lt_decl_dquote_varnames); do
+ case \`eval \\\\\$ECHO "X\\\\\$\$var"\` in
+ *[[\\\\\\\`\\"\\\$]]*)
+ eval "lt_\$var=\\\\\\"\\\`\\\$ECHO \\"X\\\$\$var\\" | \\\$Xsed -e \\"\\\$double_quote_subst\\" -e \\"\\\$sed_quote_subst\\" -e \\"\\\$delay_variable_subst\\"\\\`\\\\\\""
+ ;;
+ *)
+ eval "lt_\$var=\\\\\\"\\\$\$var\\\\\\""
+ ;;
+ esac
+done
+
+# Fix-up fallback echo if it was mangled by the above quoting rules.
+case \$lt_ECHO in
+*'\\\[$]0 --fallback-echo"')dnl "
+ lt_ECHO=\`\$ECHO "X\$lt_ECHO" | \$Xsed -e 's/\\\\\\\\\\\\\\\[$]0 --fallback-echo"\[$]/\[$]0 --fallback-echo"/'\`
+ ;;
+esac
+
+_LT_OUTPUT_LIBTOOL_INIT
+])
+
+
+# LT_OUTPUT
+# ---------
+# This macro allows early generation of the libtool script (before
+# AC_OUTPUT is called), incase it is used in configure for compilation
+# tests.
+AC_DEFUN([LT_OUTPUT],
+[: ${CONFIG_LT=./config.lt}
+AC_MSG_NOTICE([creating $CONFIG_LT])
+cat >"$CONFIG_LT" <<_LTEOF
+#! $SHELL
+# Generated by $as_me.
+# Run this file to recreate a libtool stub with the current configuration.
+
+lt_cl_silent=false
+SHELL=\${CONFIG_SHELL-$SHELL}
+_LTEOF
+
+cat >>"$CONFIG_LT" <<\_LTEOF
+AS_SHELL_SANITIZE
+_AS_PREPARE
+
+exec AS_MESSAGE_FD>&1
+exec AS_MESSAGE_LOG_FD>>config.log
+{
+ echo
+ AS_BOX([Running $as_me.])
+} >&AS_MESSAGE_LOG_FD
+
+lt_cl_help="\
+\`$as_me' creates a local libtool stub from the current configuration,
+for use in further configure time tests before the real libtool is
+generated.
+
+Usage: $[0] [[OPTIONS]]
+
+ -h, --help print this help, then exit
+ -V, --version print version number, then exit
+ -q, --quiet do not print progress messages
+ -d, --debug don't remove temporary files
+
+Report bugs to <bug-libtool at gnu.org>."
+
+lt_cl_version="\
+m4_ifset([AC_PACKAGE_NAME], [AC_PACKAGE_NAME ])config.lt[]dnl
+m4_ifset([AC_PACKAGE_VERSION], [ AC_PACKAGE_VERSION])
+configured by $[0], generated by m4_PACKAGE_STRING.
+
+Copyright (C) 2008 Free Software Foundation, Inc.
+This config.lt script is free software; the Free Software Foundation
+gives unlimited permision to copy, distribute and modify it."
+
+while test $[#] != 0
+do
+ case $[1] in
+ --version | --v* | -V )
+ echo "$lt_cl_version"; exit 0 ;;
+ --help | --h* | -h )
+ echo "$lt_cl_help"; exit 0 ;;
+ --debug | --d* | -d )
+ debug=: ;;
+ --quiet | --q* | --silent | --s* | -q )
+ lt_cl_silent=: ;;
+
+ -*) AC_MSG_ERROR([unrecognized option: $[1]
+Try \`$[0] --help' for more information.]) ;;
+
+ *) AC_MSG_ERROR([unrecognized argument: $[1]
+Try \`$[0] --help' for more information.]) ;;
+ esac
+ shift
+done
+
+if $lt_cl_silent; then
+ exec AS_MESSAGE_FD>/dev/null
+fi
+_LTEOF
+
+cat >>"$CONFIG_LT" <<_LTEOF
+_LT_OUTPUT_LIBTOOL_COMMANDS_INIT
+_LTEOF
+
+cat >>"$CONFIG_LT" <<\_LTEOF
+AC_MSG_NOTICE([creating $ofile])
+_LT_OUTPUT_LIBTOOL_COMMANDS
+AS_EXIT(0)
+_LTEOF
+chmod +x "$CONFIG_LT"
+
+# configure is writing to config.log, but config.lt does its own redirection,
+# appending to config.log, which fails on DOS, as config.log is still kept
+# open by configure. Here we exec the FD to /dev/null, effectively closing
+# config.log, so it can be properly (re)opened and appended to by config.lt.
+if test "$no_create" != yes; then
+ lt_cl_success=:
+ test "$silent" = yes &&
+ lt_config_lt_args="$lt_config_lt_args --quiet"
+ exec AS_MESSAGE_LOG_FD>/dev/null
+ $SHELL "$CONFIG_LT" $lt_config_lt_args || lt_cl_success=false
+ exec AS_MESSAGE_LOG_FD>>config.log
+ $lt_cl_success || AS_EXIT(1)
+fi
+])# LT_OUTPUT
+
+
+# _LT_CONFIG(TAG)
+# ---------------
+# If TAG is the built-in tag, create an initial libtool script with a
+# default configuration from the untagged config vars. Otherwise add code
+# to config.status for appending the configuration named by TAG from the
+# matching tagged config vars.
+m4_defun([_LT_CONFIG],
+[m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+_LT_CONFIG_SAVE_COMMANDS([
+ m4_define([_LT_TAG], m4_if([$1], [], [C], [$1]))dnl
+ m4_if(_LT_TAG, [C], [
+ # See if we are running on zsh, and set the options which allow our
+ # commands through without removal of \ escapes.
+ if test -n "${ZSH_VERSION+set}" ; then
+ setopt NO_GLOB_SUBST
+ fi
+
+ cfgfile="${ofile}T"
+ trap "$RM \"$cfgfile\"; exit 1" 1 2 15
+ $RM "$cfgfile"
+
+ cat <<_LT_EOF >> "$cfgfile"
+#! $SHELL
+
+# `$ECHO "$ofile" | sed 's%^.*/%%'` - Provide generalized library-building support services.
+# Generated automatically by $as_me ($PACKAGE$TIMESTAMP) $VERSION
+# Libtool was configured on host `(hostname || uname -n) 2>/dev/null | sed 1q`:
+# NOTE: Changes made to this file will be lost: look at ltmain.sh.
+#
+_LT_COPYING
+_LT_LIBTOOL_TAGS
+
+# ### BEGIN LIBTOOL CONFIG
+_LT_LIBTOOL_CONFIG_VARS
+_LT_LIBTOOL_TAG_VARS
+# ### END LIBTOOL CONFIG
+
+_LT_EOF
+
+ case $host_os in
+ aix3*)
+ cat <<\_LT_EOF >> "$cfgfile"
+# AIX sometimes has problems with the GCC collect2 program. For some
+# reason, if we set the COLLECT_NAMES environment variable, the problems
+# vanish in a puff of smoke.
+if test "X${COLLECT_NAMES+set}" != Xset; then
+ COLLECT_NAMES=
+ export COLLECT_NAMES
+fi
+_LT_EOF
+ ;;
+ esac
+
+ _LT_PROG_LTMAIN
+
+ # We use sed instead of cat because bash on DJGPP gets confused if
+ # if finds mixed CR/LF and LF-only lines. Since sed operates in
+ # text mode, it properly converts lines to CR/LF. This bash problem
+ # is reportedly fixed, but why not run on old versions too?
+ sed '/^# Generated shell functions inserted here/q' "$ltmain" >> "$cfgfile" \
+ || (rm -f "$cfgfile"; exit 1)
+
+ _LT_PROG_XSI_SHELLFNS
+
+ sed -n '/^# Generated shell functions inserted here/,$p' "$ltmain" >> "$cfgfile" \
+ || (rm -f "$cfgfile"; exit 1)
+
+ mv -f "$cfgfile" "$ofile" ||
+ (rm -f "$ofile" && cp "$cfgfile" "$ofile" && rm -f "$cfgfile")
+ chmod +x "$ofile"
+],
+[cat <<_LT_EOF >> "$ofile"
+
+dnl Unfortunately we have to use $1 here, since _LT_TAG is not expanded
+dnl in a comment (ie after a #).
+# ### BEGIN LIBTOOL TAG CONFIG: $1
+_LT_LIBTOOL_TAG_VARS(_LT_TAG)
+# ### END LIBTOOL TAG CONFIG: $1
+_LT_EOF
+])dnl /m4_if
+],
+[m4_if([$1], [], [
+ PACKAGE='$PACKAGE'
+ VERSION='$VERSION'
+ TIMESTAMP='$TIMESTAMP'
+ RM='$RM'
+ ofile='$ofile'], [])
+])dnl /_LT_CONFIG_SAVE_COMMANDS
+])# _LT_CONFIG
+
+
+# LT_SUPPORTED_TAG(TAG)
+# ---------------------
+# Trace this macro to discover what tags are supported by the libtool
+# --tag option, using:
+# autoconf --trace 'LT_SUPPORTED_TAG:$1'
+AC_DEFUN([LT_SUPPORTED_TAG], [])
+
+
+# C support is built-in for now
+m4_define([_LT_LANG_C_enabled], [])
+m4_define([_LT_TAGS], [])
+
+
+# LT_LANG(LANG)
+# -------------
+# Enable libtool support for the given language if not already enabled.
+AC_DEFUN([LT_LANG],
+[AC_BEFORE([$0], [LT_OUTPUT])dnl
+m4_case([$1],
+ [C], [_LT_LANG(C)],
+ [C++], [_LT_LANG(CXX)],
+ [Java], [_LT_LANG(GCJ)],
+ [Fortran 77], [_LT_LANG(F77)],
+ [Fortran], [_LT_LANG(FC)],
+ [Windows Resource], [_LT_LANG(RC)],
+ [m4_ifdef([_LT_LANG_]$1[_CONFIG],
+ [_LT_LANG($1)],
+ [m4_fatal([$0: unsupported language: "$1"])])])dnl
+])# LT_LANG
+
+
+# _LT_LANG(LANGNAME)
+# ------------------
+m4_defun([_LT_LANG],
+[m4_ifdef([_LT_LANG_]$1[_enabled], [],
+ [LT_SUPPORTED_TAG([$1])dnl
+ m4_append([_LT_TAGS], [$1 ])dnl
+ m4_define([_LT_LANG_]$1[_enabled], [])dnl
+ _LT_LANG_$1_CONFIG($1)])dnl
+])# _LT_LANG
+
+
+# _LT_LANG_DEFAULT_CONFIG
+# -----------------------
+m4_defun([_LT_LANG_DEFAULT_CONFIG],
+[AC_PROVIDE_IFELSE([AC_PROG_CXX],
+ [LT_LANG(CXX)],
+ [m4_define([AC_PROG_CXX], defn([AC_PROG_CXX])[LT_LANG(CXX)])])
+
+AC_PROVIDE_IFELSE([AC_PROG_F77],
+ [LT_LANG(F77)],
+ [m4_define([AC_PROG_F77], defn([AC_PROG_F77])[LT_LANG(F77)])])
+
+AC_PROVIDE_IFELSE([AC_PROG_FC],
+ [LT_LANG(FC)],
+ [m4_define([AC_PROG_FC], defn([AC_PROG_FC])[LT_LANG(FC)])])
+
+dnl The call to [A][M_PROG_GCJ] is quoted like that to stop aclocal
+dnl pulling things in needlessly.
+AC_PROVIDE_IFELSE([AC_PROG_GCJ],
+ [LT_LANG(GCJ)],
+ [AC_PROVIDE_IFELSE([A][M_PROG_GCJ],
+ [LT_LANG(GCJ)],
+ [AC_PROVIDE_IFELSE([LT_PROG_GCJ],
+ [LT_LANG(GCJ)],
+ [m4_ifdef([AC_PROG_GCJ],
+ [m4_define([AC_PROG_GCJ], defn([AC_PROG_GCJ])[LT_LANG(GCJ)])])
+ m4_ifdef([A][M_PROG_GCJ],
+ [m4_define([A][M_PROG_GCJ], defn([A][M_PROG_GCJ])[LT_LANG(GCJ)])])
+ m4_ifdef([LT_PROG_GCJ],
+ [m4_define([LT_PROG_GCJ], defn([LT_PROG_GCJ])[LT_LANG(GCJ)])])])])])
+
+AC_PROVIDE_IFELSE([LT_PROG_RC],
+ [LT_LANG(RC)],
+ [m4_define([LT_PROG_RC], defn([LT_PROG_RC])[LT_LANG(RC)])])
+])# _LT_LANG_DEFAULT_CONFIG
+
+# Obsolete macros:
+AU_DEFUN([AC_LIBTOOL_CXX], [LT_LANG(C++)])
+AU_DEFUN([AC_LIBTOOL_F77], [LT_LANG(Fortran 77)])
+AU_DEFUN([AC_LIBTOOL_FC], [LT_LANG(Fortran)])
+AU_DEFUN([AC_LIBTOOL_GCJ], [LT_LANG(Java)])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_CXX], [])
+dnl AC_DEFUN([AC_LIBTOOL_F77], [])
+dnl AC_DEFUN([AC_LIBTOOL_FC], [])
+dnl AC_DEFUN([AC_LIBTOOL_GCJ], [])
+
+
+# _LT_TAG_COMPILER
+# ----------------
+m4_defun([_LT_TAG_COMPILER],
+[AC_REQUIRE([AC_PROG_CC])dnl
+
+_LT_DECL([LTCC], [CC], [1], [A C compiler])dnl
+_LT_DECL([LTCFLAGS], [CFLAGS], [1], [LTCC compiler flags])dnl
+_LT_TAGDECL([CC], [compiler], [1], [A language specific compiler])dnl
+_LT_TAGDECL([with_gcc], [GCC], [0], [Is the compiler the GNU compiler?])dnl
+
+# If no C compiler was specified, use CC.
+LTCC=${LTCC-"$CC"}
+
+# If no C compiler flags were specified, use CFLAGS.
+LTCFLAGS=${LTCFLAGS-"$CFLAGS"}
+
+# Allow CC to be a program name with arguments.
+compiler=$CC
+])# _LT_TAG_COMPILER
+
+
+# _LT_COMPILER_BOILERPLATE
+# ------------------------
+# Check for compiler boilerplate output or warnings with
+# the simple compiler test code.
+m4_defun([_LT_COMPILER_BOILERPLATE],
+[m4_require([_LT_DECL_SED])dnl
+ac_outfile=conftest.$ac_objext
+echo "$lt_simple_compile_test_code" >conftest.$ac_ext
+eval "$ac_compile" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err
+_lt_compiler_boilerplate=`cat conftest.err`
+$RM conftest*
+])# _LT_COMPILER_BOILERPLATE
+
+
+# _LT_LINKER_BOILERPLATE
+# ----------------------
+# Check for linker boilerplate output or warnings with
+# the simple link test code.
+m4_defun([_LT_LINKER_BOILERPLATE],
+[m4_require([_LT_DECL_SED])dnl
+ac_outfile=conftest.$ac_objext
+echo "$lt_simple_link_test_code" >conftest.$ac_ext
+eval "$ac_link" 2>&1 >/dev/null | $SED '/^$/d; /^ *+/d' >conftest.err
+_lt_linker_boilerplate=`cat conftest.err`
+$RM -r conftest*
+])# _LT_LINKER_BOILERPLATE
+
+# _LT_REQUIRED_DARWIN_CHECKS
+# -------------------------
+m4_defun_once([_LT_REQUIRED_DARWIN_CHECKS],[
+ case $host_os in
+ rhapsody* | darwin*)
+ AC_CHECK_TOOL([DSYMUTIL], [dsymutil], [:])
+ AC_CHECK_TOOL([NMEDIT], [nmedit], [:])
+ AC_CHECK_TOOL([LIPO], [lipo], [:])
+ AC_CHECK_TOOL([OTOOL], [otool], [:])
+ AC_CHECK_TOOL([OTOOL64], [otool64], [:])
+ _LT_DECL([], [DSYMUTIL], [1],
+ [Tool to manipulate archived DWARF debug symbol files on Mac OS X])
+ _LT_DECL([], [NMEDIT], [1],
+ [Tool to change global to local symbols on Mac OS X])
+ _LT_DECL([], [LIPO], [1],
+ [Tool to manipulate fat objects and archives on Mac OS X])
+ _LT_DECL([], [OTOOL], [1],
+ [ldd/readelf like tool for Mach-O binaries on Mac OS X])
+ _LT_DECL([], [OTOOL64], [1],
+ [ldd/readelf like tool for 64 bit Mach-O binaries on Mac OS X 10.4])
+
+ AC_CACHE_CHECK([for -single_module linker flag],[lt_cv_apple_cc_single_mod],
+ [lt_cv_apple_cc_single_mod=no
+ if test -z "${LT_MULTI_MODULE}"; then
+ # By default we will add the -single_module flag. You can override
+ # by either setting the environment variable LT_MULTI_MODULE
+ # non-empty at configure time, or by adding -multi_module to the
+ # link flags.
+ rm -rf libconftest.dylib*
+ echo "int foo(void){return 1;}" > conftest.c
+ echo "$LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \
+-dynamiclib -Wl,-single_module conftest.c" >&AS_MESSAGE_LOG_FD
+ $LTCC $LTCFLAGS $LDFLAGS -o libconftest.dylib \
+ -dynamiclib -Wl,-single_module conftest.c 2>conftest.err
+ _lt_result=$?
+ if test -f libconftest.dylib && test ! -s conftest.err && test $_lt_result = 0; then
+ lt_cv_apple_cc_single_mod=yes
+ else
+ cat conftest.err >&AS_MESSAGE_LOG_FD
+ fi
+ rm -rf libconftest.dylib*
+ rm -f conftest.*
+ fi])
+ AC_CACHE_CHECK([for -exported_symbols_list linker flag],
+ [lt_cv_ld_exported_symbols_list],
+ [lt_cv_ld_exported_symbols_list=no
+ save_LDFLAGS=$LDFLAGS
+ echo "_main" > conftest.sym
+ LDFLAGS="$LDFLAGS -Wl,-exported_symbols_list,conftest.sym"
+ AC_LINK_IFELSE([AC_LANG_PROGRAM([],[])],
+ [lt_cv_ld_exported_symbols_list=yes],
+ [lt_cv_ld_exported_symbols_list=no])
+ LDFLAGS="$save_LDFLAGS"
+ ])
+ case $host_os in
+ rhapsody* | darwin1.[[012]])
+ _lt_dar_allow_undefined='${wl}-undefined ${wl}suppress' ;;
+ darwin1.*)
+ _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;;
+ darwin*) # darwin 5.x on
+ # if running on 10.5 or later, the deployment target defaults
+ # to the OS version, if on x86, and 10.4, the deployment
+ # target defaults to 10.4. Don't you love it?
+ case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in
+ 10.0,*86*-darwin8*|10.0,*-darwin[[91]]*)
+ _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;;
+ 10.[[012]]*)
+ _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;;
+ 10.*)
+ _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;;
+ esac
+ ;;
+ esac
+ if test "$lt_cv_apple_cc_single_mod" = "yes"; then
+ _lt_dar_single_mod='$single_module'
+ fi
+ if test "$lt_cv_ld_exported_symbols_list" = "yes"; then
+ _lt_dar_export_syms=' ${wl}-exported_symbols_list,$output_objdir/${libname}-symbols.expsym'
+ else
+ _lt_dar_export_syms='~$NMEDIT -s $output_objdir/${libname}-symbols.expsym ${lib}'
+ fi
+ if test "$DSYMUTIL" != ":"; then
+ _lt_dsymutil='~$DSYMUTIL $lib || :'
+ else
+ _lt_dsymutil=
+ fi
+ ;;
+ esac
+])
+
+
+# _LT_DARWIN_LINKER_FEATURES
+# --------------------------
+# Checks for linker and compiler features on darwin
+m4_defun([_LT_DARWIN_LINKER_FEATURES],
+[
+ m4_require([_LT_REQUIRED_DARWIN_CHECKS])
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ _LT_TAGVAR(hardcode_direct, $1)=no
+ _LT_TAGVAR(hardcode_automatic, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=''
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ _LT_TAGVAR(allow_undefined_flag, $1)="$_lt_dar_allow_undefined"
+ case $cc_basename in
+ ifort*) _lt_dar_can_shared=yes ;;
+ *) _lt_dar_can_shared=$GCC ;;
+ esac
+ if test "$_lt_dar_can_shared" = "yes"; then
+ output_verbose_link_cmd=echo
+ _LT_TAGVAR(archive_cmds, $1)="\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring $_lt_dar_single_mod${_lt_dsymutil}"
+ _LT_TAGVAR(module_cmds, $1)="\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dsymutil}"
+ _LT_TAGVAR(archive_expsym_cmds, $1)="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \$libobjs \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring ${_lt_dar_single_mod}${_lt_dar_export_syms}${_lt_dsymutil}"
+ _LT_TAGVAR(module_expsym_cmds, $1)="sed -e 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC \$allow_undefined_flag -o \$lib -bundle \$libobjs \$deplibs \$compiler_flags${_lt_dar_export_syms}${_lt_dsymutil}"
+ m4_if([$1], [CXX],
+[ if test "$lt_cv_apple_cc_single_mod" != "yes"; then
+ _LT_TAGVAR(archive_cmds, $1)="\$CC -r -keep_private_externs -nostdlib -o \${lib}-master.o \$libobjs~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \${lib}-master.o \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring${_lt_dsymutil}"
+ _LT_TAGVAR(archive_expsym_cmds, $1)="sed 's,^,_,' < \$export_symbols > \$output_objdir/\${libname}-symbols.expsym~\$CC -r -keep_private_externs -nostdlib -o \${lib}-master.o \$libobjs~\$CC -dynamiclib \$allow_undefined_flag -o \$lib \${lib}-master.o \$deplibs \$compiler_flags -install_name \$rpath/\$soname \$verstring${_lt_dar_export_syms}${_lt_dsymutil}"
+ fi
+],[])
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+])
+
+# _LT_SYS_MODULE_PATH_AIX
+# -----------------------
+# Links a minimal program and checks the executable
+# for the system default hardcoded library path. In most cases,
+# this is /usr/lib:/lib, but when the MPI compilers are used
+# the location of the communication and MPI libs are included too.
+# If we don't find anything, use the default library path according
+# to the aix ld manual.
+m4_defun([_LT_SYS_MODULE_PATH_AIX],
+[m4_require([_LT_DECL_SED])dnl
+AC_LINK_IFELSE(AC_LANG_PROGRAM,[
+lt_aix_libpath_sed='
+ /Import File Strings/,/^$/ {
+ /^0/ {
+ s/^0 *\(.*\)$/\1/
+ p
+ }
+ }'
+aix_libpath=`dump -H conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+# Check for a 64-bit object if we didn't find anything.
+if test -z "$aix_libpath"; then
+ aix_libpath=`dump -HX64 conftest$ac_exeext 2>/dev/null | $SED -n -e "$lt_aix_libpath_sed"`
+fi],[])
+if test -z "$aix_libpath"; then aix_libpath="/usr/lib:/lib"; fi
+])# _LT_SYS_MODULE_PATH_AIX
+
+
+# _LT_SHELL_INIT(ARG)
+# -------------------
+m4_define([_LT_SHELL_INIT],
+[ifdef([AC_DIVERSION_NOTICE],
+ [AC_DIVERT_PUSH(AC_DIVERSION_NOTICE)],
+ [AC_DIVERT_PUSH(NOTICE)])
+$1
+AC_DIVERT_POP
+])# _LT_SHELL_INIT
+
+
+# _LT_PROG_ECHO_BACKSLASH
+# -----------------------
+# Add some code to the start of the generated configure script which
+# will find an echo command which doesn't interpret backslashes.
+m4_defun([_LT_PROG_ECHO_BACKSLASH],
+[_LT_SHELL_INIT([
+# Check that we are running under the correct shell.
+SHELL=${CONFIG_SHELL-/bin/sh}
+
+case X$lt_ECHO in
+X*--fallback-echo)
+ # Remove one level of quotation (which was required for Make).
+ ECHO=`echo "$lt_ECHO" | sed 's,\\\\\[$]\\[$]0,'[$]0','`
+ ;;
+esac
+
+ECHO=${lt_ECHO-echo}
+if test "X[$]1" = X--no-reexec; then
+ # Discard the --no-reexec flag, and continue.
+ shift
+elif test "X[$]1" = X--fallback-echo; then
+ # Avoid inline document here, it may be left over
+ :
+elif test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' ; then
+ # Yippee, $ECHO works!
+ :
+else
+ # Restart under the correct shell.
+ exec $SHELL "[$]0" --no-reexec ${1+"[$]@"}
+fi
+
+if test "X[$]1" = X--fallback-echo; then
+ # used as fallback echo
+ shift
+ cat <<_LT_EOF
+[$]*
+_LT_EOF
+ exit 0
+fi
+
+# The HP-UX ksh and POSIX shell print the target directory to stdout
+# if CDPATH is set.
+(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
+
+if test -z "$lt_ECHO"; then
+ if test "X${echo_test_string+set}" != Xset; then
+ # find a string as large as possible, as long as the shell can cope with it
+ for cmd in 'sed 50q "[$]0"' 'sed 20q "[$]0"' 'sed 10q "[$]0"' 'sed 2q "[$]0"' 'echo test'; do
+ # expected sizes: less than 2Kb, 1Kb, 512 bytes, 16 bytes, ...
+ if { echo_test_string=`eval $cmd`; } 2>/dev/null &&
+ { test "X$echo_test_string" = "X$echo_test_string"; } 2>/dev/null
+ then
+ break
+ fi
+ done
+ fi
+
+ if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ :
+ else
+ # The Solaris, AIX, and Digital Unix default echo programs unquote
+ # backslashes. This makes it impossible to quote backslashes using
+ # echo "$something" | sed 's/\\/\\\\/g'
+ #
+ # So, first we look for a working echo in the user's PATH.
+
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ for dir in $PATH /usr/ucb; do
+ IFS="$lt_save_ifs"
+ if (test -f $dir/echo || test -f $dir/echo$ac_exeext) &&
+ test "X`($dir/echo '\t') 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`($dir/echo "$echo_test_string") 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ ECHO="$dir/echo"
+ break
+ fi
+ done
+ IFS="$lt_save_ifs"
+
+ if test "X$ECHO" = Xecho; then
+ # We didn't find a better echo, so look for alternatives.
+ if test "X`{ print -r '\t'; } 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`{ print -r "$echo_test_string"; } 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ # This shell has a builtin print -r that does the trick.
+ ECHO='print -r'
+ elif { test -f /bin/ksh || test -f /bin/ksh$ac_exeext; } &&
+ test "X$CONFIG_SHELL" != X/bin/ksh; then
+ # If we have ksh, try running configure again with it.
+ ORIGINAL_CONFIG_SHELL=${CONFIG_SHELL-/bin/sh}
+ export ORIGINAL_CONFIG_SHELL
+ CONFIG_SHELL=/bin/ksh
+ export CONFIG_SHELL
+ exec $CONFIG_SHELL "[$]0" --no-reexec ${1+"[$]@"}
+ else
+ # Try using printf.
+ ECHO='printf %s\n'
+ if test "X`{ $ECHO '\t'; } 2>/dev/null`" = 'X\t' &&
+ echo_testing_string=`{ $ECHO "$echo_test_string"; } 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ # Cool, printf works
+ :
+ elif echo_testing_string=`($ORIGINAL_CONFIG_SHELL "[$]0" --fallback-echo '\t') 2>/dev/null` &&
+ test "X$echo_testing_string" = 'X\t' &&
+ echo_testing_string=`($ORIGINAL_CONFIG_SHELL "[$]0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ CONFIG_SHELL=$ORIGINAL_CONFIG_SHELL
+ export CONFIG_SHELL
+ SHELL="$CONFIG_SHELL"
+ export SHELL
+ ECHO="$CONFIG_SHELL [$]0 --fallback-echo"
+ elif echo_testing_string=`($CONFIG_SHELL "[$]0" --fallback-echo '\t') 2>/dev/null` &&
+ test "X$echo_testing_string" = 'X\t' &&
+ echo_testing_string=`($CONFIG_SHELL "[$]0" --fallback-echo "$echo_test_string") 2>/dev/null` &&
+ test "X$echo_testing_string" = "X$echo_test_string"; then
+ ECHO="$CONFIG_SHELL [$]0 --fallback-echo"
+ else
+ # maybe with a smaller string...
+ prev=:
+
+ for cmd in 'echo test' 'sed 2q "[$]0"' 'sed 10q "[$]0"' 'sed 20q "[$]0"' 'sed 50q "[$]0"'; do
+ if { test "X$echo_test_string" = "X`eval $cmd`"; } 2>/dev/null
+ then
+ break
+ fi
+ prev="$cmd"
+ done
+
+ if test "$prev" != 'sed 50q "[$]0"'; then
+ echo_test_string=`eval $prev`
+ export echo_test_string
+ exec ${ORIGINAL_CONFIG_SHELL-${CONFIG_SHELL-/bin/sh}} "[$]0" ${1+"[$]@"}
+ else
+ # Oops. We lost completely, so just stick with echo.
+ ECHO=echo
+ fi
+ fi
+ fi
+ fi
+ fi
+fi
+
+# Copy echo and quote the copy suitably for passing to libtool from
+# the Makefile, instead of quoting the original, which is used later.
+lt_ECHO=$ECHO
+if test "X$lt_ECHO" = "X$CONFIG_SHELL [$]0 --fallback-echo"; then
+ lt_ECHO="$CONFIG_SHELL \\\$\[$]0 --fallback-echo"
+fi
+
+AC_SUBST(lt_ECHO)
+])
+_LT_DECL([], [SHELL], [1], [Shell to use when invoking shell scripts])
+_LT_DECL([], [ECHO], [1],
+ [An echo program that does not interpret backslashes])
+])# _LT_PROG_ECHO_BACKSLASH
+
+
+# _LT_ENABLE_LOCK
+# ---------------
+m4_defun([_LT_ENABLE_LOCK],
+[AC_ARG_ENABLE([libtool-lock],
+ [AS_HELP_STRING([--disable-libtool-lock],
+ [avoid locking (might break parallel builds)])])
+test "x$enable_libtool_lock" != xno && enable_libtool_lock=yes
+
+# Some flags need to be propagated to the compiler or linker for good
+# libtool support.
+case $host in
+ia64-*-hpux*)
+ # Find out which ABI we are using.
+ echo 'int i;' > conftest.$ac_ext
+ if AC_TRY_EVAL(ac_compile); then
+ case `/usr/bin/file conftest.$ac_objext` in
+ *ELF-32*)
+ HPUX_IA64_MODE="32"
+ ;;
+ *ELF-64*)
+ HPUX_IA64_MODE="64"
+ ;;
+ esac
+ fi
+ rm -rf conftest*
+ ;;
+*-*-irix6*)
+ # Find out which ABI we are using.
+ echo '[#]line __oline__ "configure"' > conftest.$ac_ext
+ if AC_TRY_EVAL(ac_compile); then
+ if test "$lt_cv_prog_gnu_ld" = yes; then
+ case `/usr/bin/file conftest.$ac_objext` in
+ *32-bit*)
+ LD="${LD-ld} -melf32bsmip"
+ ;;
+ *N32*)
+ LD="${LD-ld} -melf32bmipn32"
+ ;;
+ *64-bit*)
+ LD="${LD-ld} -melf64bmip"
+ ;;
+ esac
+ else
+ case `/usr/bin/file conftest.$ac_objext` in
+ *32-bit*)
+ LD="${LD-ld} -32"
+ ;;
+ *N32*)
+ LD="${LD-ld} -n32"
+ ;;
+ *64-bit*)
+ LD="${LD-ld} -64"
+ ;;
+ esac
+ fi
+ fi
+ rm -rf conftest*
+ ;;
+
+x86_64-*kfreebsd*-gnu|x86_64-*linux*|ppc*-*linux*|powerpc*-*linux*| \
+s390*-*linux*|s390*-*tpf*|sparc*-*linux*)
+ # Find out which ABI we are using.
+ echo 'int i;' > conftest.$ac_ext
+ if AC_TRY_EVAL(ac_compile); then
+ case `/usr/bin/file conftest.o` in
+ *32-bit*)
+ case $host in
+ x86_64-*kfreebsd*-gnu)
+ LD="${LD-ld} -m elf_i386_fbsd"
+ ;;
+ x86_64-*linux*)
+ LD="${LD-ld} -m elf_i386"
+ ;;
+ ppc64-*linux*|powerpc64-*linux*)
+ LD="${LD-ld} -m elf32ppclinux"
+ ;;
+ s390x-*linux*)
+ LD="${LD-ld} -m elf_s390"
+ ;;
+ sparc64-*linux*)
+ LD="${LD-ld} -m elf32_sparc"
+ ;;
+ esac
+ ;;
+ *64-bit*)
+ case $host in
+ x86_64-*kfreebsd*-gnu)
+ LD="${LD-ld} -m elf_x86_64_fbsd"
+ ;;
+ x86_64-*linux*)
+ LD="${LD-ld} -m elf_x86_64"
+ ;;
+ ppc*-*linux*|powerpc*-*linux*)
+ LD="${LD-ld} -m elf64ppc"
+ ;;
+ s390*-*linux*|s390*-*tpf*)
+ LD="${LD-ld} -m elf64_s390"
+ ;;
+ sparc*-*linux*)
+ LD="${LD-ld} -m elf64_sparc"
+ ;;
+ esac
+ ;;
+ esac
+ fi
+ rm -rf conftest*
+ ;;
+
+*-*-sco3.2v5*)
+ # On SCO OpenServer 5, we need -belf to get full-featured binaries.
+ SAVE_CFLAGS="$CFLAGS"
+ CFLAGS="$CFLAGS -belf"
+ AC_CACHE_CHECK([whether the C compiler needs -belf], lt_cv_cc_needs_belf,
+ [AC_LANG_PUSH(C)
+ AC_LINK_IFELSE([AC_LANG_PROGRAM([[]],[[]])],[lt_cv_cc_needs_belf=yes],[lt_cv_cc_needs_belf=no])
+ AC_LANG_POP])
+ if test x"$lt_cv_cc_needs_belf" != x"yes"; then
+ # this is probably gcc 2.8.0, egcs 1.0 or newer; no need for -belf
+ CFLAGS="$SAVE_CFLAGS"
+ fi
+ ;;
+sparc*-*solaris*)
+ # Find out which ABI we are using.
+ echo 'int i;' > conftest.$ac_ext
+ if AC_TRY_EVAL(ac_compile); then
+ case `/usr/bin/file conftest.o` in
+ *64-bit*)
+ case $lt_cv_prog_gnu_ld in
+ yes*) LD="${LD-ld} -m elf64_sparc" ;;
+ *)
+ if ${LD-ld} -64 -r -o conftest2.o conftest.o >/dev/null 2>&1; then
+ LD="${LD-ld} -64"
+ fi
+ ;;
+ esac
+ ;;
+ esac
+ fi
+ rm -rf conftest*
+ ;;
+esac
+
+need_locks="$enable_libtool_lock"
+])# _LT_ENABLE_LOCK
+
+
+# _LT_CMD_OLD_ARCHIVE
+# -------------------
+m4_defun([_LT_CMD_OLD_ARCHIVE],
+[AC_CHECK_TOOL(AR, ar, false)
+test -z "$AR" && AR=ar
+test -z "$AR_FLAGS" && AR_FLAGS=cru
+_LT_DECL([], [AR], [1], [The archiver])
+_LT_DECL([], [AR_FLAGS], [1])
+
+AC_CHECK_TOOL(STRIP, strip, :)
+test -z "$STRIP" && STRIP=:
+_LT_DECL([], [STRIP], [1], [A symbol stripping program])
+
+AC_CHECK_TOOL(RANLIB, ranlib, :)
+test -z "$RANLIB" && RANLIB=:
+_LT_DECL([], [RANLIB], [1],
+ [Commands used to install an old-style archive])
+
+# Determine commands to create old-style static archives.
+old_archive_cmds='$AR $AR_FLAGS $oldlib$oldobjs'
+old_postinstall_cmds='chmod 644 $oldlib'
+old_postuninstall_cmds=
+
+if test -n "$RANLIB"; then
+ case $host_os in
+ openbsd*)
+ old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB -t \$oldlib"
+ ;;
+ *)
+ old_postinstall_cmds="$old_postinstall_cmds~\$RANLIB \$oldlib"
+ ;;
+ esac
+ old_archive_cmds="$old_archive_cmds~\$RANLIB \$oldlib"
+fi
+_LT_DECL([], [old_postinstall_cmds], [2])
+_LT_DECL([], [old_postuninstall_cmds], [2])
+_LT_TAGDECL([], [old_archive_cmds], [2],
+ [Commands used to build an old-style archive])
+])# _LT_CMD_OLD_ARCHIVE
+
+
+# _LT_COMPILER_OPTION(MESSAGE, VARIABLE-NAME, FLAGS,
+# [OUTPUT-FILE], [ACTION-SUCCESS], [ACTION-FAILURE])
+# ----------------------------------------------------------------
+# Check whether the given compiler option works
+AC_DEFUN([_LT_COMPILER_OPTION],
+[m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+m4_require([_LT_DECL_SED])dnl
+AC_CACHE_CHECK([$1], [$2],
+ [$2=no
+ m4_if([$4], , [ac_outfile=conftest.$ac_objext], [ac_outfile=$4])
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+ lt_compiler_flag="$3"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ # The option is referenced via a variable to avoid confusing sed.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [[^ ]]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:__oline__: $lt_compile\"" >&AS_MESSAGE_LOG_FD)
+ (eval "$lt_compile" 2>conftest.err)
+ ac_status=$?
+ cat conftest.err >&AS_MESSAGE_LOG_FD
+ echo "$as_me:__oline__: \$? = $ac_status" >&AS_MESSAGE_LOG_FD
+ if (exit $ac_status) && test -s "$ac_outfile"; then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings other than the usual output.
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' >conftest.exp
+ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2
+ if test ! -s conftest.er2 || diff conftest.exp conftest.er2 >/dev/null; then
+ $2=yes
+ fi
+ fi
+ $RM conftest*
+])
+
+if test x"[$]$2" = xyes; then
+ m4_if([$5], , :, [$5])
+else
+ m4_if([$6], , :, [$6])
+fi
+])# _LT_COMPILER_OPTION
+
+# Old name:
+AU_ALIAS([AC_LIBTOOL_COMPILER_OPTION], [_LT_COMPILER_OPTION])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_COMPILER_OPTION], [])
+
+
+# _LT_LINKER_OPTION(MESSAGE, VARIABLE-NAME, FLAGS,
+# [ACTION-SUCCESS], [ACTION-FAILURE])
+# ----------------------------------------------------
+# Check whether the given linker option works
+AC_DEFUN([_LT_LINKER_OPTION],
+[m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+m4_require([_LT_DECL_SED])dnl
+AC_CACHE_CHECK([$1], [$2],
+ [$2=no
+ save_LDFLAGS="$LDFLAGS"
+ LDFLAGS="$LDFLAGS $3"
+ echo "$lt_simple_link_test_code" > conftest.$ac_ext
+ if (eval $ac_link 2>conftest.err) && test -s conftest$ac_exeext; then
+ # The linker can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ if test -s conftest.err; then
+ # Append any errors to the config.log.
+ cat conftest.err 1>&AS_MESSAGE_LOG_FD
+ $ECHO "X$_lt_linker_boilerplate" | $Xsed -e '/^$/d' > conftest.exp
+ $SED '/^$/d; /^ *+/d' conftest.err >conftest.er2
+ if diff conftest.exp conftest.er2 >/dev/null; then
+ $2=yes
+ fi
+ else
+ $2=yes
+ fi
+ fi
+ $RM -r conftest*
+ LDFLAGS="$save_LDFLAGS"
+])
+
+if test x"[$]$2" = xyes; then
+ m4_if([$4], , :, [$4])
+else
+ m4_if([$5], , :, [$5])
+fi
+])# _LT_LINKER_OPTION
+
+# Old name:
+AU_ALIAS([AC_LIBTOOL_LINKER_OPTION], [_LT_LINKER_OPTION])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_LINKER_OPTION], [])
+
+
+# LT_CMD_MAX_LEN
+#---------------
+AC_DEFUN([LT_CMD_MAX_LEN],
+[AC_REQUIRE([AC_CANONICAL_HOST])dnl
+# find the maximum length of command line arguments
+AC_MSG_CHECKING([the maximum length of command line arguments])
+AC_CACHE_VAL([lt_cv_sys_max_cmd_len], [dnl
+ i=0
+ teststring="ABCD"
+
+ case $build_os in
+ msdosdjgpp*)
+ # On DJGPP, this test can blow up pretty badly due to problems in libc
+ # (any single argument exceeding 2000 bytes causes a buffer overrun
+ # during glob expansion). Even if it were fixed, the result of this
+ # check would be larger than it should be.
+ lt_cv_sys_max_cmd_len=12288; # 12K is about right
+ ;;
+
+ gnu*)
+ # Under GNU Hurd, this test is not required because there is
+ # no limit to the length of command line arguments.
+ # Libtool will interpret -1 as no limit whatsoever
+ lt_cv_sys_max_cmd_len=-1;
+ ;;
+
+ cygwin* | mingw* | cegcc*)
+ # On Win9x/ME, this test blows up -- it succeeds, but takes
+ # about 5 minutes as the teststring grows exponentially.
+ # Worse, since 9x/ME are not pre-emptively multitasking,
+ # you end up with a "frozen" computer, even though with patience
+ # the test eventually succeeds (with a max line length of 256k).
+ # Instead, let's just punt: use the minimum linelength reported by
+ # all of the supported platforms: 8192 (on NT/2K/XP).
+ lt_cv_sys_max_cmd_len=8192;
+ ;;
+
+ amigaos*)
+ # On AmigaOS with pdksh, this test takes hours, literally.
+ # So we just punt and use a minimum line length of 8192.
+ lt_cv_sys_max_cmd_len=8192;
+ ;;
+
+ netbsd* | freebsd* | openbsd* | darwin* | dragonfly*)
+ # This has been around since 386BSD, at least. Likely further.
+ if test -x /sbin/sysctl; then
+ lt_cv_sys_max_cmd_len=`/sbin/sysctl -n kern.argmax`
+ elif test -x /usr/sbin/sysctl; then
+ lt_cv_sys_max_cmd_len=`/usr/sbin/sysctl -n kern.argmax`
+ else
+ lt_cv_sys_max_cmd_len=65536 # usable default for all BSDs
+ fi
+ # And add a safety zone
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
+ ;;
+
+ interix*)
+ # We know the value 262144 and hardcode it with a safety zone (like BSD)
+ lt_cv_sys_max_cmd_len=196608
+ ;;
+
+ osf*)
+ # Dr. Hans Ekkehard Plesser reports seeing a kernel panic running configure
+ # due to this test when exec_disable_arg_limit is 1 on Tru64. It is not
+ # nice to cause kernel panics so lets avoid the loop below.
+ # First set a reasonable default.
+ lt_cv_sys_max_cmd_len=16384
+ #
+ if test -x /sbin/sysconfig; then
+ case `/sbin/sysconfig -q proc exec_disable_arg_limit` in
+ *1*) lt_cv_sys_max_cmd_len=-1 ;;
+ esac
+ fi
+ ;;
+ sco3.2v5*)
+ lt_cv_sys_max_cmd_len=102400
+ ;;
+ sysv5* | sco5v6* | sysv4.2uw2*)
+ kargmax=`grep ARG_MAX /etc/conf/cf.d/stune 2>/dev/null`
+ if test -n "$kargmax"; then
+ lt_cv_sys_max_cmd_len=`echo $kargmax | sed 's/.*[[ ]]//'`
+ else
+ lt_cv_sys_max_cmd_len=32768
+ fi
+ ;;
+ *)
+ lt_cv_sys_max_cmd_len=`(getconf ARG_MAX) 2> /dev/null`
+ if test -n "$lt_cv_sys_max_cmd_len"; then
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 4`
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \* 3`
+ else
+ # Make teststring a little bigger before we do anything with it.
+ # a 1K string should be a reasonable start.
+ for i in 1 2 3 4 5 6 7 8 ; do
+ teststring=$teststring$teststring
+ done
+ SHELL=${SHELL-${CONFIG_SHELL-/bin/sh}}
+ # If test is not a shell built-in, we'll probably end up computing a
+ # maximum length that is only half of the actual maximum length, but
+ # we can't tell.
+ while { test "X"`$SHELL [$]0 --fallback-echo "X$teststring$teststring" 2>/dev/null` \
+ = "XX$teststring$teststring"; } >/dev/null 2>&1 &&
+ test $i != 17 # 1/2 MB should be enough
+ do
+ i=`expr $i + 1`
+ teststring=$teststring$teststring
+ done
+ # Only check the string length outside the loop.
+ lt_cv_sys_max_cmd_len=`expr "X$teststring" : ".*" 2>&1`
+ teststring=
+ # Add a significant safety factor because C++ compilers can tack on
+ # massive amounts of additional arguments before passing them to the
+ # linker. It appears as though 1/2 is a usable value.
+ lt_cv_sys_max_cmd_len=`expr $lt_cv_sys_max_cmd_len \/ 2`
+ fi
+ ;;
+ esac
+])
+if test -n $lt_cv_sys_max_cmd_len ; then
+ AC_MSG_RESULT($lt_cv_sys_max_cmd_len)
+else
+ AC_MSG_RESULT(none)
+fi
+max_cmd_len=$lt_cv_sys_max_cmd_len
+_LT_DECL([], [max_cmd_len], [0],
+ [What is the maximum length of a command?])
+])# LT_CMD_MAX_LEN
+
+# Old name:
+AU_ALIAS([AC_LIBTOOL_SYS_MAX_CMD_LEN], [LT_CMD_MAX_LEN])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_SYS_MAX_CMD_LEN], [])
+
+
+# _LT_HEADER_DLFCN
+# ----------------
+m4_defun([_LT_HEADER_DLFCN],
+[AC_CHECK_HEADERS([dlfcn.h], [], [], [AC_INCLUDES_DEFAULT])dnl
+])# _LT_HEADER_DLFCN
+
+
+# _LT_TRY_DLOPEN_SELF (ACTION-IF-TRUE, ACTION-IF-TRUE-W-USCORE,
+# ACTION-IF-FALSE, ACTION-IF-CROSS-COMPILING)
+# ----------------------------------------------------------------
+m4_defun([_LT_TRY_DLOPEN_SELF],
+[m4_require([_LT_HEADER_DLFCN])dnl
+if test "$cross_compiling" = yes; then :
+ [$4]
+else
+ lt_dlunknown=0; lt_dlno_uscore=1; lt_dlneed_uscore=2
+ lt_status=$lt_dlunknown
+ cat > conftest.$ac_ext <<_LT_EOF
+[#line __oline__ "configure"
+#include "confdefs.h"
+
+#if HAVE_DLFCN_H
+#include <dlfcn.h>
+#endif
+
+#include <stdio.h>
+
+#ifdef RTLD_GLOBAL
+# define LT_DLGLOBAL RTLD_GLOBAL
+#else
+# ifdef DL_GLOBAL
+# define LT_DLGLOBAL DL_GLOBAL
+# else
+# define LT_DLGLOBAL 0
+# endif
+#endif
+
+/* We may have to define LT_DLLAZY_OR_NOW in the command line if we
+ find out it does not work in some platform. */
+#ifndef LT_DLLAZY_OR_NOW
+# ifdef RTLD_LAZY
+# define LT_DLLAZY_OR_NOW RTLD_LAZY
+# else
+# ifdef DL_LAZY
+# define LT_DLLAZY_OR_NOW DL_LAZY
+# else
+# ifdef RTLD_NOW
+# define LT_DLLAZY_OR_NOW RTLD_NOW
+# else
+# ifdef DL_NOW
+# define LT_DLLAZY_OR_NOW DL_NOW
+# else
+# define LT_DLLAZY_OR_NOW 0
+# endif
+# endif
+# endif
+# endif
+#endif
+
+void fnord() { int i=42;}
+int main ()
+{
+ void *self = dlopen (0, LT_DLGLOBAL|LT_DLLAZY_OR_NOW);
+ int status = $lt_dlunknown;
+
+ if (self)
+ {
+ if (dlsym (self,"fnord")) status = $lt_dlno_uscore;
+ else if (dlsym( self,"_fnord")) status = $lt_dlneed_uscore;
+ /* dlclose (self); */
+ }
+ else
+ puts (dlerror ());
+
+ return status;
+}]
+_LT_EOF
+ if AC_TRY_EVAL(ac_link) && test -s conftest${ac_exeext} 2>/dev/null; then
+ (./conftest; exit; ) >&AS_MESSAGE_LOG_FD 2>/dev/null
+ lt_status=$?
+ case x$lt_status in
+ x$lt_dlno_uscore) $1 ;;
+ x$lt_dlneed_uscore) $2 ;;
+ x$lt_dlunknown|x*) $3 ;;
+ esac
+ else :
+ # compilation failed
+ $3
+ fi
+fi
+rm -fr conftest*
+])# _LT_TRY_DLOPEN_SELF
+
+
+# LT_SYS_DLOPEN_SELF
+# ------------------
+AC_DEFUN([LT_SYS_DLOPEN_SELF],
+[m4_require([_LT_HEADER_DLFCN])dnl
+if test "x$enable_dlopen" != xyes; then
+ enable_dlopen=unknown
+ enable_dlopen_self=unknown
+ enable_dlopen_self_static=unknown
+else
+ lt_cv_dlopen=no
+ lt_cv_dlopen_libs=
+
+ case $host_os in
+ beos*)
+ lt_cv_dlopen="load_add_on"
+ lt_cv_dlopen_libs=
+ lt_cv_dlopen_self=yes
+ ;;
+
+ mingw* | pw32* | cegcc*)
+ lt_cv_dlopen="LoadLibrary"
+ lt_cv_dlopen_libs=
+ ;;
+
+ cygwin*)
+ lt_cv_dlopen="dlopen"
+ lt_cv_dlopen_libs=
+ ;;
+
+ darwin*)
+ # if libdl is installed we need to link against it
+ AC_CHECK_LIB([dl], [dlopen],
+ [lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl"],[
+ lt_cv_dlopen="dyld"
+ lt_cv_dlopen_libs=
+ lt_cv_dlopen_self=yes
+ ])
+ ;;
+
+ *)
+ AC_CHECK_FUNC([shl_load],
+ [lt_cv_dlopen="shl_load"],
+ [AC_CHECK_LIB([dld], [shl_load],
+ [lt_cv_dlopen="shl_load" lt_cv_dlopen_libs="-ldld"],
+ [AC_CHECK_FUNC([dlopen],
+ [lt_cv_dlopen="dlopen"],
+ [AC_CHECK_LIB([dl], [dlopen],
+ [lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-ldl"],
+ [AC_CHECK_LIB([svld], [dlopen],
+ [lt_cv_dlopen="dlopen" lt_cv_dlopen_libs="-lsvld"],
+ [AC_CHECK_LIB([dld], [dld_link],
+ [lt_cv_dlopen="dld_link" lt_cv_dlopen_libs="-ldld"])
+ ])
+ ])
+ ])
+ ])
+ ])
+ ;;
+ esac
+
+ if test "x$lt_cv_dlopen" != xno; then
+ enable_dlopen=yes
+ else
+ enable_dlopen=no
+ fi
+
+ case $lt_cv_dlopen in
+ dlopen)
+ save_CPPFLAGS="$CPPFLAGS"
+ test "x$ac_cv_header_dlfcn_h" = xyes && CPPFLAGS="$CPPFLAGS -DHAVE_DLFCN_H"
+
+ save_LDFLAGS="$LDFLAGS"
+ wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $export_dynamic_flag_spec\"
+
+ save_LIBS="$LIBS"
+ LIBS="$lt_cv_dlopen_libs $LIBS"
+
+ AC_CACHE_CHECK([whether a program can dlopen itself],
+ lt_cv_dlopen_self, [dnl
+ _LT_TRY_DLOPEN_SELF(
+ lt_cv_dlopen_self=yes, lt_cv_dlopen_self=yes,
+ lt_cv_dlopen_self=no, lt_cv_dlopen_self=cross)
+ ])
+
+ if test "x$lt_cv_dlopen_self" = xyes; then
+ wl=$lt_prog_compiler_wl eval LDFLAGS=\"\$LDFLAGS $lt_prog_compiler_static\"
+ AC_CACHE_CHECK([whether a statically linked program can dlopen itself],
+ lt_cv_dlopen_self_static, [dnl
+ _LT_TRY_DLOPEN_SELF(
+ lt_cv_dlopen_self_static=yes, lt_cv_dlopen_self_static=yes,
+ lt_cv_dlopen_self_static=no, lt_cv_dlopen_self_static=cross)
+ ])
+ fi
+
+ CPPFLAGS="$save_CPPFLAGS"
+ LDFLAGS="$save_LDFLAGS"
+ LIBS="$save_LIBS"
+ ;;
+ esac
+
+ case $lt_cv_dlopen_self in
+ yes|no) enable_dlopen_self=$lt_cv_dlopen_self ;;
+ *) enable_dlopen_self=unknown ;;
+ esac
+
+ case $lt_cv_dlopen_self_static in
+ yes|no) enable_dlopen_self_static=$lt_cv_dlopen_self_static ;;
+ *) enable_dlopen_self_static=unknown ;;
+ esac
+fi
+_LT_DECL([dlopen_support], [enable_dlopen], [0],
+ [Whether dlopen is supported])
+_LT_DECL([dlopen_self], [enable_dlopen_self], [0],
+ [Whether dlopen of programs is supported])
+_LT_DECL([dlopen_self_static], [enable_dlopen_self_static], [0],
+ [Whether dlopen of statically linked programs is supported])
+])# LT_SYS_DLOPEN_SELF
+
+# Old name:
+AU_ALIAS([AC_LIBTOOL_DLOPEN_SELF], [LT_SYS_DLOPEN_SELF])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_DLOPEN_SELF], [])
+
+
+# _LT_COMPILER_C_O([TAGNAME])
+# ---------------------------
+# Check to see if options -c and -o are simultaneously supported by compiler.
+# This macro does not hard code the compiler like AC_PROG_CC_C_O.
+m4_defun([_LT_COMPILER_C_O],
+[m4_require([_LT_DECL_SED])dnl
+m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+m4_require([_LT_TAG_COMPILER])dnl
+AC_CACHE_CHECK([if $compiler supports -c -o file.$ac_objext],
+ [_LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)],
+ [_LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)=no
+ $RM -r conftest 2>/dev/null
+ mkdir conftest
+ cd conftest
+ mkdir out
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ lt_compiler_flag="-o out/conftest2.$ac_objext"
+ # Insert the option either (1) after the last *FLAGS variable, or
+ # (2) before a word containing "conftest.", or (3) at the end.
+ # Note that $ac_compile itself does not contain backslashes and begins
+ # with a dollar sign (not a hyphen), so the echo should work correctly.
+ lt_compile=`echo "$ac_compile" | $SED \
+ -e 's:.*FLAGS}\{0,1\} :&$lt_compiler_flag :; t' \
+ -e 's: [[^ ]]*conftest\.: $lt_compiler_flag&:; t' \
+ -e 's:$: $lt_compiler_flag:'`
+ (eval echo "\"\$as_me:__oline__: $lt_compile\"" >&AS_MESSAGE_LOG_FD)
+ (eval "$lt_compile" 2>out/conftest.err)
+ ac_status=$?
+ cat out/conftest.err >&AS_MESSAGE_LOG_FD
+ echo "$as_me:__oline__: \$? = $ac_status" >&AS_MESSAGE_LOG_FD
+ if (exit $ac_status) && test -s out/conftest2.$ac_objext
+ then
+ # The compiler can only warn and ignore the option if not recognized
+ # So say no if there are warnings
+ $ECHO "X$_lt_compiler_boilerplate" | $Xsed -e '/^$/d' > out/conftest.exp
+ $SED '/^$/d; /^ *+/d' out/conftest.err >out/conftest.er2
+ if test ! -s out/conftest.er2 || diff out/conftest.exp out/conftest.er2 >/dev/null; then
+ _LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)=yes
+ fi
+ fi
+ chmod u+w . 2>&AS_MESSAGE_LOG_FD
+ $RM conftest*
+ # SGI C++ compiler will create directory out/ii_files/ for
+ # template instantiation
+ test -d out/ii_files && $RM out/ii_files/* && rmdir out/ii_files
+ $RM out/* && rmdir out
+ cd ..
+ $RM -r conftest
+ $RM conftest*
+])
+_LT_TAGDECL([compiler_c_o], [lt_cv_prog_compiler_c_o], [1],
+ [Does compiler simultaneously support -c and -o options?])
+])# _LT_COMPILER_C_O
+
+
+# _LT_COMPILER_FILE_LOCKS([TAGNAME])
+# ----------------------------------
+# Check to see if we can do hard links to lock some files if needed
+m4_defun([_LT_COMPILER_FILE_LOCKS],
+[m4_require([_LT_ENABLE_LOCK])dnl
+m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+_LT_COMPILER_C_O([$1])
+
+hard_links="nottested"
+if test "$_LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)" = no && test "$need_locks" != no; then
+ # do not overwrite the value of need_locks provided by the user
+ AC_MSG_CHECKING([if we can lock with hard links])
+ hard_links=yes
+ $RM conftest*
+ ln conftest.a conftest.b 2>/dev/null && hard_links=no
+ touch conftest.a
+ ln conftest.a conftest.b 2>&5 || hard_links=no
+ ln conftest.a conftest.b 2>/dev/null && hard_links=no
+ AC_MSG_RESULT([$hard_links])
+ if test "$hard_links" = no; then
+ AC_MSG_WARN([`$CC' does not support `-c -o', so `make -j' may be unsafe])
+ need_locks=warn
+ fi
+else
+ need_locks=no
+fi
+_LT_DECL([], [need_locks], [1], [Must we lock files when doing compilation?])
+])# _LT_COMPILER_FILE_LOCKS
+
+
+# _LT_CHECK_OBJDIR
+# ----------------
+m4_defun([_LT_CHECK_OBJDIR],
+[AC_CACHE_CHECK([for objdir], [lt_cv_objdir],
+[rm -f .libs 2>/dev/null
+mkdir .libs 2>/dev/null
+if test -d .libs; then
+ lt_cv_objdir=.libs
+else
+ # MS-DOS does not allow filenames that begin with a dot.
+ lt_cv_objdir=_libs
+fi
+rmdir .libs 2>/dev/null])
+objdir=$lt_cv_objdir
+_LT_DECL([], [objdir], [0],
+ [The name of the directory that contains temporary libtool files])dnl
+m4_pattern_allow([LT_OBJDIR])dnl
+AC_DEFINE_UNQUOTED(LT_OBJDIR, "$lt_cv_objdir/",
+ [Define to the sub-directory in which libtool stores uninstalled libraries.])
+])# _LT_CHECK_OBJDIR
+
+
+# _LT_LINKER_HARDCODE_LIBPATH([TAGNAME])
+# --------------------------------------
+# Check hardcoding attributes.
+m4_defun([_LT_LINKER_HARDCODE_LIBPATH],
+[AC_MSG_CHECKING([how to hardcode library paths into programs])
+_LT_TAGVAR(hardcode_action, $1)=
+if test -n "$_LT_TAGVAR(hardcode_libdir_flag_spec, $1)" ||
+ test -n "$_LT_TAGVAR(runpath_var, $1)" ||
+ test "X$_LT_TAGVAR(hardcode_automatic, $1)" = "Xyes" ; then
+
+ # We can hardcode non-existent directories.
+ if test "$_LT_TAGVAR(hardcode_direct, $1)" != no &&
+ # If the only mechanism to avoid hardcoding is shlibpath_var, we
+ # have to relink, otherwise we might link with an installed library
+ # when we should be linking with a yet-to-be-installed one
+ ## test "$_LT_TAGVAR(hardcode_shlibpath_var, $1)" != no &&
+ test "$_LT_TAGVAR(hardcode_minus_L, $1)" != no; then
+ # Linking always hardcodes the temporary library directory.
+ _LT_TAGVAR(hardcode_action, $1)=relink
+ else
+ # We can link without hardcoding, and we can hardcode nonexisting dirs.
+ _LT_TAGVAR(hardcode_action, $1)=immediate
+ fi
+else
+ # We cannot hardcode anything, or else we can only hardcode existing
+ # directories.
+ _LT_TAGVAR(hardcode_action, $1)=unsupported
+fi
+AC_MSG_RESULT([$_LT_TAGVAR(hardcode_action, $1)])
+
+if test "$_LT_TAGVAR(hardcode_action, $1)" = relink ||
+ test "$_LT_TAGVAR(inherit_rpath, $1)" = yes; then
+ # Fast installation is not supported
+ enable_fast_install=no
+elif test "$shlibpath_overrides_runpath" = yes ||
+ test "$enable_shared" = no; then
+ # Fast installation is not necessary
+ enable_fast_install=needless
+fi
+_LT_TAGDECL([], [hardcode_action], [0],
+ [How to hardcode a shared library path into an executable])
+])# _LT_LINKER_HARDCODE_LIBPATH
+
+
+# _LT_CMD_STRIPLIB
+# ----------------
+m4_defun([_LT_CMD_STRIPLIB],
+[m4_require([_LT_DECL_EGREP])
+striplib=
+old_striplib=
+AC_MSG_CHECKING([whether stripping libraries is possible])
+if test -n "$STRIP" && $STRIP -V 2>&1 | $GREP "GNU strip" >/dev/null; then
+ test -z "$old_striplib" && old_striplib="$STRIP --strip-debug"
+ test -z "$striplib" && striplib="$STRIP --strip-unneeded"
+ AC_MSG_RESULT([yes])
+else
+# FIXME - insert some real tests, host_os isn't really good enough
+ case $host_os in
+ darwin*)
+ if test -n "$STRIP" ; then
+ striplib="$STRIP -x"
+ old_striplib="$STRIP -S"
+ AC_MSG_RESULT([yes])
+ else
+ AC_MSG_RESULT([no])
+ fi
+ ;;
+ *)
+ AC_MSG_RESULT([no])
+ ;;
+ esac
+fi
+_LT_DECL([], [old_striplib], [1], [Commands to strip libraries])
+_LT_DECL([], [striplib], [1])
+])# _LT_CMD_STRIPLIB
+
+
+# _LT_SYS_DYNAMIC_LINKER([TAG])
+# -----------------------------
+# PORTME Fill in your ld.so characteristics
+m4_defun([_LT_SYS_DYNAMIC_LINKER],
+[AC_REQUIRE([AC_CANONICAL_HOST])dnl
+m4_require([_LT_DECL_EGREP])dnl
+m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+m4_require([_LT_DECL_OBJDUMP])dnl
+m4_require([_LT_DECL_SED])dnl
+AC_MSG_CHECKING([dynamic linker characteristics])
+m4_if([$1],
+ [], [
+if test "$GCC" = yes; then
+ case $host_os in
+ darwin*) lt_awk_arg="/^libraries:/,/LR/" ;;
+ *) lt_awk_arg="/^libraries:/" ;;
+ esac
+ lt_search_path_spec=`$CC -print-search-dirs | awk $lt_awk_arg | $SED -e "s/^libraries://" -e "s,=/,/,g"`
+ if $ECHO "$lt_search_path_spec" | $GREP ';' >/dev/null ; then
+ # if the path contains ";" then we assume it to be the separator
+ # otherwise default to the standard path separator (i.e. ":") - it is
+ # assumed that no part of a normal pathname contains ";" but that should
+ # okay in the real world where ";" in dirpaths is itself problematic.
+ lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e 's/;/ /g'`
+ else
+ lt_search_path_spec=`$ECHO "$lt_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
+ fi
+ # Ok, now we have the path, separated by spaces, we can step through it
+ # and add multilib dir if necessary.
+ lt_tmp_lt_search_path_spec=
+ lt_multi_os_dir=`$CC $CPPFLAGS $CFLAGS $LDFLAGS -print-multi-os-directory 2>/dev/null`
+ for lt_sys_path in $lt_search_path_spec; do
+ if test -d "$lt_sys_path/$lt_multi_os_dir"; then
+ lt_tmp_lt_search_path_spec="$lt_tmp_lt_search_path_spec $lt_sys_path/$lt_multi_os_dir"
+ else
+ test -d "$lt_sys_path" && \
+ lt_tmp_lt_search_path_spec="$lt_tmp_lt_search_path_spec $lt_sys_path"
+ fi
+ done
+ lt_search_path_spec=`$ECHO $lt_tmp_lt_search_path_spec | awk '
+BEGIN {RS=" "; FS="/|\n";} {
+ lt_foo="";
+ lt_count=0;
+ for (lt_i = NF; lt_i > 0; lt_i--) {
+ if ($lt_i != "" && $lt_i != ".") {
+ if ($lt_i == "..") {
+ lt_count++;
+ } else {
+ if (lt_count == 0) {
+ lt_foo="/" $lt_i lt_foo;
+ } else {
+ lt_count--;
+ }
+ }
+ }
+ }
+ if (lt_foo != "") { lt_freq[[lt_foo]]++; }
+ if (lt_freq[[lt_foo]] == 1) { print lt_foo; }
+}'`
+ sys_lib_search_path_spec=`$ECHO $lt_search_path_spec`
+else
+ sys_lib_search_path_spec="/lib /usr/lib /usr/local/lib"
+fi])
+library_names_spec=
+libname_spec='lib$name'
+soname_spec=
+shrext_cmds=".so"
+postinstall_cmds=
+postuninstall_cmds=
+finish_cmds=
+finish_eval=
+shlibpath_var=
+shlibpath_overrides_runpath=unknown
+version_type=none
+dynamic_linker="$host_os ld.so"
+sys_lib_dlsearch_path_spec="/lib /usr/lib"
+need_lib_prefix=unknown
+hardcode_into_libs=no
+
+# when you set need_version to no, make sure it does not cause -set_version
+# flags to be left without arguments
+need_version=unknown
+
+case $host_os in
+aix3*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname.a'
+ shlibpath_var=LIBPATH
+
+ # AIX 3 has no versioning support, so we append a major version to the name.
+ soname_spec='${libname}${release}${shared_ext}$major'
+ ;;
+
+aix[[4-9]]*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ hardcode_into_libs=yes
+ if test "$host_cpu" = ia64; then
+ # AIX 5 supports IA64
+ library_names_spec='${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext}$versuffix $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ else
+ # With GCC up to 2.95.x, collect2 would create an import file
+ # for dependence libraries. The import file would start with
+ # the line `#! .'. This would cause the generated library to
+ # depend on `.', always an invalid library. This was fixed in
+ # development snapshots of GCC prior to 3.0.
+ case $host_os in
+ aix4 | aix4.[[01]] | aix4.[[01]].*)
+ if { echo '#if __GNUC__ > 2 || (__GNUC__ == 2 && __GNUC_MINOR__ >= 97)'
+ echo ' yes '
+ echo '#endif'; } | ${CC} -E - | $GREP yes > /dev/null; then
+ :
+ else
+ can_build_shared=no
+ fi
+ ;;
+ esac
+ # AIX (on Power*) has no versioning support, so currently we can not hardcode correct
+ # soname into executable. Probably we can add versioning support to
+ # collect2, so additional links can be useful in future.
+ if test "$aix_use_runtimelinking" = yes; then
+ # If using run time linking (on AIX 4.2 or later) use lib<name>.so
+ # instead of lib<name>.a to let people know that these are not
+ # typical AIX shared libraries.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ else
+ # We preserve .a as extension for shared libraries through AIX4.2
+ # and later when we are not doing run time linking.
+ library_names_spec='${libname}${release}.a $libname.a'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ fi
+ shlibpath_var=LIBPATH
+ fi
+ ;;
+
+amigaos*)
+ case $host_cpu in
+ powerpc)
+ # Since July 2007 AmigaOS4 officially supports .so libraries.
+ # When compiling the executable, add -use-dynld -Lsobjs: to the compileline.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ ;;
+ m68k)
+ library_names_spec='$libname.ixlibrary $libname.a'
+ # Create ${libname}_ixlibrary.a entries in /sys/libs.
+ finish_eval='for lib in `ls $libdir/*.ixlibrary 2>/dev/null`; do libname=`$ECHO "X$lib" | $Xsed -e '\''s%^.*/\([[^/]]*\)\.ixlibrary$%\1%'\''`; test $RM /sys/libs/${libname}_ixlibrary.a; $show "cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a"; cd /sys/libs && $LN_S $lib ${libname}_ixlibrary.a || exit 1; done'
+ ;;
+ esac
+ ;;
+
+beos*)
+ library_names_spec='${libname}${shared_ext}'
+ dynamic_linker="$host_os ld.so"
+ shlibpath_var=LIBRARY_PATH
+ ;;
+
+bsdi[[45]]*)
+ version_type=linux
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ sys_lib_search_path_spec="/shlib /usr/lib /usr/X11/lib /usr/contrib/lib /lib /usr/local/lib"
+ sys_lib_dlsearch_path_spec="/shlib /usr/lib /usr/local/lib"
+ # the default ld.so.conf also contains /usr/contrib/lib and
+ # /usr/X11R6/lib (/usr/X11 is a link to /usr/X11R6), but let us allow
+ # libtool to hard-code these into programs
+ ;;
+
+cygwin* | mingw* | pw32* | cegcc*)
+ version_type=windows
+ shrext_cmds=".dll"
+ need_version=no
+ need_lib_prefix=no
+
+ case $GCC,$host_os in
+ yes,cygwin* | yes,mingw* | yes,pw32* | yes,cegcc*)
+ library_names_spec='$libname.dll.a'
+ # DLL is installed to $(libdir)/../bin by postinstall_cmds
+ postinstall_cmds='base_file=`basename \${file}`~
+ dlpath=`$SHELL 2>&1 -c '\''. $dir/'\''\${base_file}'\''i; echo \$dlname'\''`~
+ dldir=$destdir/`dirname \$dlpath`~
+ test -d \$dldir || mkdir -p \$dldir~
+ $install_prog $dir/$dlname \$dldir/$dlname~
+ chmod a+x \$dldir/$dlname~
+ if test -n '\''$stripme'\'' && test -n '\''$striplib'\''; then
+ eval '\''$striplib \$dldir/$dlname'\'' || exit \$?;
+ fi'
+ postuninstall_cmds='dldll=`$SHELL 2>&1 -c '\''. $file; echo \$dlname'\''`~
+ dlpath=$dir/\$dldll~
+ $RM \$dlpath'
+ shlibpath_overrides_runpath=yes
+
+ case $host_os in
+ cygwin*)
+ # Cygwin DLLs use 'cyg' prefix rather than 'lib'
+ soname_spec='`echo ${libname} | sed -e 's/^lib/cyg/'``echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
+ sys_lib_search_path_spec="/usr/lib /lib/w32api /lib /usr/local/lib"
+ ;;
+ mingw* | cegcc*)
+ # MinGW DLLs use traditional 'lib' prefix
+ soname_spec='${libname}`echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
+ sys_lib_search_path_spec=`$CC -print-search-dirs | $GREP "^libraries:" | $SED -e "s/^libraries://" -e "s,=/,/,g"`
+ if $ECHO "$sys_lib_search_path_spec" | [$GREP ';[c-zC-Z]:/' >/dev/null]; then
+ # It is most probably a Windows format PATH printed by
+ # mingw gcc, but we are running on Cygwin. Gcc prints its search
+ # path with ; separators, and with drive letters. We can handle the
+ # drive letters (cygwin fileutils understands them), so leave them,
+ # especially as we might pass files found there to a mingw objdump,
+ # which wouldn't understand a cygwinified path. Ahh.
+ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e 's/;/ /g'`
+ else
+ sys_lib_search_path_spec=`$ECHO "$sys_lib_search_path_spec" | $SED -e "s/$PATH_SEPARATOR/ /g"`
+ fi
+ ;;
+ pw32*)
+ # pw32 DLLs use 'pw' prefix rather than 'lib'
+ library_names_spec='`echo ${libname} | sed -e 's/^lib/pw/'``echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext}'
+ ;;
+ esac
+ ;;
+
+ *)
+ library_names_spec='${libname}`echo ${release} | $SED -e 's/[[.]]/-/g'`${versuffix}${shared_ext} $libname.lib'
+ ;;
+ esac
+ dynamic_linker='Win32 ld.exe'
+ # FIXME: first we should search . and the directory the executable is in
+ shlibpath_var=PATH
+ ;;
+
+darwin* | rhapsody*)
+ dynamic_linker="$host_os dyld"
+ version_type=darwin
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${major}$shared_ext ${libname}$shared_ext'
+ soname_spec='${libname}${release}${major}$shared_ext'
+ shlibpath_overrides_runpath=yes
+ shlibpath_var=DYLD_LIBRARY_PATH
+ shrext_cmds='`test .$module = .yes && echo .so || echo .dylib`'
+m4_if([$1], [],[
+ sys_lib_search_path_spec="$sys_lib_search_path_spec /usr/local/lib"])
+ sys_lib_dlsearch_path_spec='/usr/local/lib /lib /usr/lib'
+ ;;
+
+dgux*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname$shared_ext'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ ;;
+
+freebsd1*)
+ dynamic_linker=no
+ ;;
+
+freebsd* | dragonfly*)
+ # DragonFly does not have aout. When/if they implement a new
+ # versioning mechanism, adjust this.
+ if test -x /usr/bin/objformat; then
+ objformat=`/usr/bin/objformat`
+ else
+ case $host_os in
+ freebsd[[123]]*) objformat=aout ;;
+ *) objformat=elf ;;
+ esac
+ fi
+ version_type=freebsd-$objformat
+ case $version_type in
+ freebsd-elf*)
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}'
+ need_version=no
+ need_lib_prefix=no
+ ;;
+ freebsd-*)
+ library_names_spec='${libname}${release}${shared_ext}$versuffix $libname${shared_ext}$versuffix'
+ need_version=yes
+ ;;
+ esac
+ shlibpath_var=LD_LIBRARY_PATH
+ case $host_os in
+ freebsd2*)
+ shlibpath_overrides_runpath=yes
+ ;;
+ freebsd3.[[01]]* | freebsdelf3.[[01]]*)
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+ freebsd3.[[2-9]]* | freebsdelf3.[[2-9]]* | \
+ freebsd4.[[0-5]] | freebsdelf4.[[0-5]] | freebsd4.1.1 | freebsdelf4.1.1)
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+ *) # from 4.6 on, and DragonFly
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+ esac
+ ;;
+
+gnu*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}${major} ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ hardcode_into_libs=yes
+ ;;
+
+hpux9* | hpux10* | hpux11*)
+ # Give a soname corresponding to the major version so that dld.sl refuses to
+ # link against other versions.
+ version_type=sunos
+ need_lib_prefix=no
+ need_version=no
+ case $host_cpu in
+ ia64*)
+ shrext_cmds='.so'
+ hardcode_into_libs=yes
+ dynamic_linker="$host_os dld.so"
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ if test "X$HPUX_IA64_MODE" = X32; then
+ sys_lib_search_path_spec="/usr/lib/hpux32 /usr/local/lib/hpux32 /usr/local/lib"
+ else
+ sys_lib_search_path_spec="/usr/lib/hpux64 /usr/local/lib/hpux64"
+ fi
+ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec
+ ;;
+ hppa*64*)
+ shrext_cmds='.sl'
+ hardcode_into_libs=yes
+ dynamic_linker="$host_os dld.sl"
+ shlibpath_var=LD_LIBRARY_PATH # How should we handle SHLIB_PATH
+ shlibpath_overrides_runpath=yes # Unless +noenvvar is specified.
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ sys_lib_search_path_spec="/usr/lib/pa20_64 /usr/ccs/lib/pa20_64"
+ sys_lib_dlsearch_path_spec=$sys_lib_search_path_spec
+ ;;
+ *)
+ shrext_cmds='.sl'
+ dynamic_linker="$host_os dld.sl"
+ shlibpath_var=SHLIB_PATH
+ shlibpath_overrides_runpath=no # +s is required to enable SHLIB_PATH
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ ;;
+ esac
+ # HP-UX runs *really* slowly unless shared libraries are mode 555.
+ postinstall_cmds='chmod 555 $lib'
+ ;;
+
+interix[[3-9]]*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ dynamic_linker='Interix 3.x ld.so.1 (PE, like ELF)'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
+irix5* | irix6* | nonstopux*)
+ case $host_os in
+ nonstopux*) version_type=nonstopux ;;
+ *)
+ if test "$lt_cv_prog_gnu_ld" = yes; then
+ version_type=linux
+ else
+ version_type=irix
+ fi ;;
+ esac
+ need_lib_prefix=no
+ need_version=no
+ soname_spec='${libname}${release}${shared_ext}$major'
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${release}${shared_ext} $libname${shared_ext}'
+ case $host_os in
+ irix5* | nonstopux*)
+ libsuff= shlibsuff=
+ ;;
+ *)
+ case $LD in # libtool.m4 will add one of these switches to LD
+ *-32|*"-32 "|*-melf32bsmip|*"-melf32bsmip ")
+ libsuff= shlibsuff= libmagic=32-bit;;
+ *-n32|*"-n32 "|*-melf32bmipn32|*"-melf32bmipn32 ")
+ libsuff=32 shlibsuff=N32 libmagic=N32;;
+ *-64|*"-64 "|*-melf64bmip|*"-melf64bmip ")
+ libsuff=64 shlibsuff=64 libmagic=64-bit;;
+ *) libsuff= shlibsuff= libmagic=never-match;;
+ esac
+ ;;
+ esac
+ shlibpath_var=LD_LIBRARY${shlibsuff}_PATH
+ shlibpath_overrides_runpath=no
+ sys_lib_search_path_spec="/usr/lib${libsuff} /lib${libsuff} /usr/local/lib${libsuff}"
+ sys_lib_dlsearch_path_spec="/usr/lib${libsuff} /lib${libsuff}"
+ hardcode_into_libs=yes
+ ;;
+
+# No shared lib support for Linux oldld, aout, or coff.
+linux*oldld* | linux*aout* | linux*coff*)
+ dynamic_linker=no
+ ;;
+
+# This must be Linux ELF.
+linux* | k*bsd*-gnu)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -n $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ # Some binutils ld are patched to set DT_RUNPATH
+ save_LDFLAGS=$LDFLAGS
+ save_libdir=$libdir
+ eval "libdir=/foo; wl=\"$_LT_TAGVAR(lt_prog_compiler_wl, $1)\"; \
+ LDFLAGS=\"\$LDFLAGS $_LT_TAGVAR(hardcode_libdir_flag_spec, $1)\""
+ AC_LINK_IFELSE([AC_LANG_PROGRAM([],[])],
+ [AS_IF([ ($OBJDUMP -p conftest$ac_exeext) 2>/dev/null | grep "RUNPATH.*$libdir" >/dev/null],
+ [shlibpath_overrides_runpath=yes])])
+ LDFLAGS=$save_LDFLAGS
+ libdir=$save_libdir
+
+ # This implies no fast_install, which is unacceptable.
+ # Some rework will be needed to allow for fast_install
+ # before this can be enabled.
+ hardcode_into_libs=yes
+
+ # Add ABI-specific directories to the system library path.
+ sys_lib_dlsearch_path_spec="/lib64 /usr/lib64 /lib /usr/lib"
+
+ # Append ld.so.conf contents to the search path
+ if test -f /etc/ld.so.conf; then
+ lt_ld_extra=`awk '/^include / { system(sprintf("cd /etc; cat %s 2>/dev/null", \[$]2)); skip = 1; } { if (!skip) print \[$]0; skip = 0; }' < /etc/ld.so.conf | $SED -e 's/#.*//;/^[ ]*hwcap[ ]/d;s/[:, ]/ /g;s/=[^=]*$//;s/=[^= ]* / /g;/^$/d' | tr '\n' ' '`
+ sys_lib_dlsearch_path_spec="$sys_lib_dlsearch_path_spec $lt_ld_extra"
+ fi
+
+ # We used to test for /lib/ld.so.1 and disable shared libraries on
+ # powerpc, because MkLinux only supported shared libraries with the
+ # GNU dynamic linker. Since this was broken with cross compilers,
+ # most powerpc-linux boxes support dynamic linking these days and
+ # people can always --disable-shared, the test was removed, and we
+ # assume the GNU/Linux dynamic linker is in use.
+ dynamic_linker='GNU/Linux ld.so'
+ ;;
+
+netbsd*)
+ version_type=sunos
+ need_lib_prefix=no
+ need_version=no
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir'
+ dynamic_linker='NetBSD (a.out) ld.so'
+ else
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major ${libname}${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ dynamic_linker='NetBSD ld.elf_so'
+ fi
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ ;;
+
+newsos6)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ ;;
+
+*nto* | *qnx*)
+ version_type=qnx
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ dynamic_linker='ldqnx.so'
+ ;;
+
+openbsd*)
+ version_type=sunos
+ sys_lib_dlsearch_path_spec="/usr/lib"
+ need_lib_prefix=no
+ # Some older versions of OpenBSD (3.3 at least) *do* need versioned libs.
+ case $host_os in
+ openbsd3.3 | openbsd3.3.*) need_version=yes ;;
+ *) need_version=no ;;
+ esac
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/sbin" ldconfig -m $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ case $host_os in
+ openbsd2.[[89]] | openbsd2.[[89]].*)
+ shlibpath_overrides_runpath=no
+ ;;
+ *)
+ shlibpath_overrides_runpath=yes
+ ;;
+ esac
+ else
+ shlibpath_overrides_runpath=yes
+ fi
+ ;;
+
+os2*)
+ libname_spec='$name'
+ shrext_cmds=".dll"
+ need_lib_prefix=no
+ library_names_spec='$libname${shared_ext} $libname.a'
+ dynamic_linker='OS/2 ld.exe'
+ shlibpath_var=LIBPATH
+ ;;
+
+osf3* | osf4* | osf5*)
+ version_type=osf
+ need_lib_prefix=no
+ need_version=no
+ soname_spec='${libname}${release}${shared_ext}$major'
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ sys_lib_search_path_spec="/usr/shlib /usr/ccs/lib /usr/lib/cmplrs/cc /usr/lib /usr/local/lib /var/shlib"
+ sys_lib_dlsearch_path_spec="$sys_lib_search_path_spec"
+ ;;
+
+rdos*)
+ dynamic_linker=no
+ ;;
+
+solaris*)
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ # ldd complains unless libraries are executable
+ postinstall_cmds='chmod +x $lib'
+ ;;
+
+sunos4*)
+ version_type=sunos
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${shared_ext}$versuffix'
+ finish_cmds='PATH="\$PATH:/usr/etc" ldconfig $libdir'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ if test "$with_gnu_ld" = yes; then
+ need_lib_prefix=no
+ fi
+ need_version=yes
+ ;;
+
+sysv4 | sysv4.3*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ case $host_vendor in
+ sni)
+ shlibpath_overrides_runpath=no
+ need_lib_prefix=no
+ runpath_var=LD_RUN_PATH
+ ;;
+ siemens)
+ need_lib_prefix=no
+ ;;
+ motorola)
+ need_lib_prefix=no
+ need_version=no
+ shlibpath_overrides_runpath=no
+ sys_lib_search_path_spec='/lib /usr/lib /usr/ccs/lib'
+ ;;
+ esac
+ ;;
+
+sysv4*MP*)
+ if test -d /usr/nec ;then
+ version_type=linux
+ library_names_spec='$libname${shared_ext}.$versuffix $libname${shared_ext}.$major $libname${shared_ext}'
+ soname_spec='$libname${shared_ext}.$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ fi
+ ;;
+
+sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*)
+ version_type=freebsd-elf
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext} $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=yes
+ hardcode_into_libs=yes
+ if test "$with_gnu_ld" = yes; then
+ sys_lib_search_path_spec='/usr/local/lib /usr/gnu/lib /usr/ccs/lib /usr/lib /lib'
+ else
+ sys_lib_search_path_spec='/usr/ccs/lib /usr/lib'
+ case $host_os in
+ sco3.2v5*)
+ sys_lib_search_path_spec="$sys_lib_search_path_spec /lib"
+ ;;
+ esac
+ fi
+ sys_lib_dlsearch_path_spec='/usr/lib'
+ ;;
+
+tpf*)
+ # TPF is a cross-target only. Preferred cross-host = GNU/Linux.
+ version_type=linux
+ need_lib_prefix=no
+ need_version=no
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ shlibpath_var=LD_LIBRARY_PATH
+ shlibpath_overrides_runpath=no
+ hardcode_into_libs=yes
+ ;;
+
+uts4*)
+ version_type=linux
+ library_names_spec='${libname}${release}${shared_ext}$versuffix ${libname}${release}${shared_ext}$major $libname${shared_ext}'
+ soname_spec='${libname}${release}${shared_ext}$major'
+ shlibpath_var=LD_LIBRARY_PATH
+ ;;
+
+*)
+ dynamic_linker=no
+ ;;
+esac
+AC_MSG_RESULT([$dynamic_linker])
+test "$dynamic_linker" = no && can_build_shared=no
+
+variables_saved_for_relink="PATH $shlibpath_var $runpath_var"
+if test "$GCC" = yes; then
+ variables_saved_for_relink="$variables_saved_for_relink GCC_EXEC_PREFIX COMPILER_PATH LIBRARY_PATH"
+fi
+
+if test "${lt_cv_sys_lib_search_path_spec+set}" = set; then
+ sys_lib_search_path_spec="$lt_cv_sys_lib_search_path_spec"
+fi
+if test "${lt_cv_sys_lib_dlsearch_path_spec+set}" = set; then
+ sys_lib_dlsearch_path_spec="$lt_cv_sys_lib_dlsearch_path_spec"
+fi
+
+_LT_DECL([], [variables_saved_for_relink], [1],
+ [Variables whose values should be saved in libtool wrapper scripts and
+ restored at link time])
+_LT_DECL([], [need_lib_prefix], [0],
+ [Do we need the "lib" prefix for modules?])
+_LT_DECL([], [need_version], [0], [Do we need a version for libraries?])
+_LT_DECL([], [version_type], [0], [Library versioning type])
+_LT_DECL([], [runpath_var], [0], [Shared library runtime path variable])
+_LT_DECL([], [shlibpath_var], [0],[Shared library path variable])
+_LT_DECL([], [shlibpath_overrides_runpath], [0],
+ [Is shlibpath searched before the hard-coded library search path?])
+_LT_DECL([], [libname_spec], [1], [Format of library name prefix])
+_LT_DECL([], [library_names_spec], [1],
+ [[List of archive names. First name is the real one, the rest are links.
+ The last name is the one that the linker finds with -lNAME]])
+_LT_DECL([], [soname_spec], [1],
+ [[The coded name of the library, if different from the real name]])
+_LT_DECL([], [postinstall_cmds], [2],
+ [Command to use after installation of a shared archive])
+_LT_DECL([], [postuninstall_cmds], [2],
+ [Command to use after uninstallation of a shared archive])
+_LT_DECL([], [finish_cmds], [2],
+ [Commands used to finish a libtool library installation in a directory])
+_LT_DECL([], [finish_eval], [1],
+ [[As "finish_cmds", except a single script fragment to be evaled but
+ not shown]])
+_LT_DECL([], [hardcode_into_libs], [0],
+ [Whether we should hardcode library paths into libraries])
+_LT_DECL([], [sys_lib_search_path_spec], [2],
+ [Compile-time system search path for libraries])
+_LT_DECL([], [sys_lib_dlsearch_path_spec], [2],
+ [Run-time system search path for libraries])
+])# _LT_SYS_DYNAMIC_LINKER
+
+
+# _LT_PATH_TOOL_PREFIX(TOOL)
+# --------------------------
+# find a file program which can recognize shared library
+AC_DEFUN([_LT_PATH_TOOL_PREFIX],
+[m4_require([_LT_DECL_EGREP])dnl
+AC_MSG_CHECKING([for $1])
+AC_CACHE_VAL(lt_cv_path_MAGIC_CMD,
+[case $MAGIC_CMD in
+[[\\/*] | ?:[\\/]*])
+ lt_cv_path_MAGIC_CMD="$MAGIC_CMD" # Let the user override the test with a path.
+ ;;
+*)
+ lt_save_MAGIC_CMD="$MAGIC_CMD"
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+dnl $ac_dummy forces splitting on constant user-supplied paths.
+dnl POSIX.2 word splitting is done only on the output of word expansions,
+dnl not every word. This closes a longstanding sh security hole.
+ ac_dummy="m4_if([$2], , $PATH, [$2])"
+ for ac_dir in $ac_dummy; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ if test -f $ac_dir/$1; then
+ lt_cv_path_MAGIC_CMD="$ac_dir/$1"
+ if test -n "$file_magic_test_file"; then
+ case $deplibs_check_method in
+ "file_magic "*)
+ file_magic_regex=`expr "$deplibs_check_method" : "file_magic \(.*\)"`
+ MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
+ if eval $file_magic_cmd \$file_magic_test_file 2> /dev/null |
+ $EGREP "$file_magic_regex" > /dev/null; then
+ :
+ else
+ cat <<_LT_EOF 1>&2
+
+*** Warning: the command libtool uses to detect shared libraries,
+*** $file_magic_cmd, produces output that libtool cannot recognize.
+*** The result is that libtool may fail to recognize shared libraries
+*** as such. This will affect the creation of libtool libraries that
+*** depend on shared libraries, but programs linked with such libtool
+*** libraries will work regardless of this problem. Nevertheless, you
+*** may want to report the problem to your system manager and/or to
+*** bug-libtool at gnu.org
+
+_LT_EOF
+ fi ;;
+ esac
+ fi
+ break
+ fi
+ done
+ IFS="$lt_save_ifs"
+ MAGIC_CMD="$lt_save_MAGIC_CMD"
+ ;;
+esac])
+MAGIC_CMD="$lt_cv_path_MAGIC_CMD"
+if test -n "$MAGIC_CMD"; then
+ AC_MSG_RESULT($MAGIC_CMD)
+else
+ AC_MSG_RESULT(no)
+fi
+_LT_DECL([], [MAGIC_CMD], [0],
+ [Used to examine libraries when file_magic_cmd begins with "file"])dnl
+])# _LT_PATH_TOOL_PREFIX
+
+# Old name:
+AU_ALIAS([AC_PATH_TOOL_PREFIX], [_LT_PATH_TOOL_PREFIX])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_PATH_TOOL_PREFIX], [])
+
+
+# _LT_PATH_MAGIC
+# --------------
+# find a file program which can recognize a shared library
+m4_defun([_LT_PATH_MAGIC],
+[_LT_PATH_TOOL_PREFIX(${ac_tool_prefix}file, /usr/bin$PATH_SEPARATOR$PATH)
+if test -z "$lt_cv_path_MAGIC_CMD"; then
+ if test -n "$ac_tool_prefix"; then
+ _LT_PATH_TOOL_PREFIX(file, /usr/bin$PATH_SEPARATOR$PATH)
+ else
+ MAGIC_CMD=:
+ fi
+fi
+])# _LT_PATH_MAGIC
+
+
+# LT_PATH_LD
+# ----------
+# find the pathname to the GNU or non-GNU linker
+AC_DEFUN([LT_PATH_LD],
+[AC_REQUIRE([AC_PROG_CC])dnl
+AC_REQUIRE([AC_CANONICAL_HOST])dnl
+AC_REQUIRE([AC_CANONICAL_BUILD])dnl
+m4_require([_LT_DECL_SED])dnl
+m4_require([_LT_DECL_EGREP])dnl
+
+AC_ARG_WITH([gnu-ld],
+ [AS_HELP_STRING([--with-gnu-ld],
+ [assume the C compiler uses GNU ld @<:@default=no@:>@])],
+ [test "$withval" = no || with_gnu_ld=yes],
+ [with_gnu_ld=no])dnl
+
+ac_prog=ld
+if test "$GCC" = yes; then
+ # Check if gcc -print-prog-name=ld gives a path.
+ AC_MSG_CHECKING([for ld used by $CC])
+ case $host in
+ *-*-mingw*)
+ # gcc leaves a trailing carriage return which upsets mingw
+ ac_prog=`($CC -print-prog-name=ld) 2>&5 | tr -d '\015'` ;;
+ *)
+ ac_prog=`($CC -print-prog-name=ld) 2>&5` ;;
+ esac
+ case $ac_prog in
+ # Accept absolute paths.
+ [[\\/]]* | ?:[[\\/]]*)
+ re_direlt='/[[^/]][[^/]]*/\.\./'
+ # Canonicalize the pathname of ld
+ ac_prog=`$ECHO "$ac_prog"| $SED 's%\\\\%/%g'`
+ while $ECHO "$ac_prog" | $GREP "$re_direlt" > /dev/null 2>&1; do
+ ac_prog=`$ECHO $ac_prog| $SED "s%$re_direlt%/%"`
+ done
+ test -z "$LD" && LD="$ac_prog"
+ ;;
+ "")
+ # If it fails, then pretend we aren't using GCC.
+ ac_prog=ld
+ ;;
+ *)
+ # If it is relative, then search for the first ld in PATH.
+ with_gnu_ld=unknown
+ ;;
+ esac
+elif test "$with_gnu_ld" = yes; then
+ AC_MSG_CHECKING([for GNU ld])
+else
+ AC_MSG_CHECKING([for non-GNU ld])
+fi
+AC_CACHE_VAL(lt_cv_path_LD,
+[if test -z "$LD"; then
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ for ac_dir in $PATH; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ if test -f "$ac_dir/$ac_prog" || test -f "$ac_dir/$ac_prog$ac_exeext"; then
+ lt_cv_path_LD="$ac_dir/$ac_prog"
+ # Check to see if the program is GNU ld. I'd rather use --version,
+ # but apparently some variants of GNU ld only accept -v.
+ # Break only if it was the GNU/non-GNU ld that we prefer.
+ case `"$lt_cv_path_LD" -v 2>&1 </dev/null` in
+ *GNU* | *'with BFD'*)
+ test "$with_gnu_ld" != no && break
+ ;;
+ *)
+ test "$with_gnu_ld" != yes && break
+ ;;
+ esac
+ fi
+ done
+ IFS="$lt_save_ifs"
+else
+ lt_cv_path_LD="$LD" # Let the user override the test with a path.
+fi])
+LD="$lt_cv_path_LD"
+if test -n "$LD"; then
+ AC_MSG_RESULT($LD)
+else
+ AC_MSG_RESULT(no)
+fi
+test -z "$LD" && AC_MSG_ERROR([no acceptable ld found in \$PATH])
+_LT_PATH_LD_GNU
+AC_SUBST([LD])
+
+_LT_TAGDECL([], [LD], [1], [The linker used to build libraries])
+])# LT_PATH_LD
+
+# Old names:
+AU_ALIAS([AM_PROG_LD], [LT_PATH_LD])
+AU_ALIAS([AC_PROG_LD], [LT_PATH_LD])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AM_PROG_LD], [])
+dnl AC_DEFUN([AC_PROG_LD], [])
+
+
+# _LT_PATH_LD_GNU
+#- --------------
+m4_defun([_LT_PATH_LD_GNU],
+[AC_CACHE_CHECK([if the linker ($LD) is GNU ld], lt_cv_prog_gnu_ld,
+[# I'd rather use --version here, but apparently some GNU lds only accept -v.
+case `$LD -v 2>&1 </dev/null` in
+*GNU* | *'with BFD'*)
+ lt_cv_prog_gnu_ld=yes
+ ;;
+*)
+ lt_cv_prog_gnu_ld=no
+ ;;
+esac])
+with_gnu_ld=$lt_cv_prog_gnu_ld
+])# _LT_PATH_LD_GNU
+
+
+# _LT_CMD_RELOAD
+# --------------
+# find reload flag for linker
+# -- PORTME Some linkers may need a different reload flag.
+m4_defun([_LT_CMD_RELOAD],
+[AC_CACHE_CHECK([for $LD option to reload object files],
+ lt_cv_ld_reload_flag,
+ [lt_cv_ld_reload_flag='-r'])
+reload_flag=$lt_cv_ld_reload_flag
+case $reload_flag in
+"" | " "*) ;;
+*) reload_flag=" $reload_flag" ;;
+esac
+reload_cmds='$LD$reload_flag -o $output$reload_objs'
+case $host_os in
+ darwin*)
+ if test "$GCC" = yes; then
+ reload_cmds='$LTCC $LTCFLAGS -nostdlib ${wl}-r -o $output$reload_objs'
+ else
+ reload_cmds='$LD$reload_flag -o $output$reload_objs'
+ fi
+ ;;
+esac
+_LT_DECL([], [reload_flag], [1], [How to create reloadable object files])dnl
+_LT_DECL([], [reload_cmds], [2])dnl
+])# _LT_CMD_RELOAD
+
+
+# _LT_CHECK_MAGIC_METHOD
+# ----------------------
+# how to check for library dependencies
+# -- PORTME fill in with the dynamic library characteristics
+m4_defun([_LT_CHECK_MAGIC_METHOD],
+[m4_require([_LT_DECL_EGREP])
+m4_require([_LT_DECL_OBJDUMP])
+AC_CACHE_CHECK([how to recognize dependent libraries],
+lt_cv_deplibs_check_method,
+[lt_cv_file_magic_cmd='$MAGIC_CMD'
+lt_cv_file_magic_test_file=
+lt_cv_deplibs_check_method='unknown'
+# Need to set the preceding variable on all platforms that support
+# interlibrary dependencies.
+# 'none' -- dependencies not supported.
+# `unknown' -- same as none, but documents that we really don't know.
+# 'pass_all' -- all dependencies passed with no checks.
+# 'test_compile' -- check by making test program.
+# 'file_magic [[regex]]' -- check by looking for files in library path
+# which responds to the $file_magic_cmd with a given extended regex.
+# If you have `file' or equivalent on your system and you're not sure
+# whether `pass_all' will *always* work, you probably want this one.
+
+case $host_os in
+aix[[4-9]]*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+beos*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+bsdi[[45]]*)
+ lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[ML]]SB (shared object|dynamic lib)'
+ lt_cv_file_magic_cmd='/usr/bin/file -L'
+ lt_cv_file_magic_test_file=/shlib/libc.so
+ ;;
+
+cygwin*)
+ # func_win32_libid is a shell function defined in ltmain.sh
+ lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL'
+ lt_cv_file_magic_cmd='func_win32_libid'
+ ;;
+
+mingw* | pw32*)
+ # Base MSYS/MinGW do not provide the 'file' command needed by
+ # func_win32_libid shell function, so use a weaker test based on 'objdump',
+ # unless we find 'file', for example because we are cross-compiling.
+ if ( file / ) >/dev/null 2>&1; then
+ lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL'
+ lt_cv_file_magic_cmd='func_win32_libid'
+ else
+ lt_cv_deplibs_check_method='file_magic file format pei*-i386(.*architecture: i386)?'
+ lt_cv_file_magic_cmd='$OBJDUMP -f'
+ fi
+ ;;
+
+cegcc)
+ # use the weaker test based on 'objdump'. See mingw*.
+ lt_cv_deplibs_check_method='file_magic file format pe-arm-.*little(.*architecture: arm)?'
+ lt_cv_file_magic_cmd='$OBJDUMP -f'
+ ;;
+
+darwin* | rhapsody*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+freebsd* | dragonfly*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then
+ case $host_cpu in
+ i*86 )
+ # Not sure whether the presence of OpenBSD here was a mistake.
+ # Let's accept both of them until this is cleared up.
+ lt_cv_deplibs_check_method='file_magic (FreeBSD|OpenBSD|DragonFly)/i[[3-9]]86 (compact )?demand paged shared library'
+ lt_cv_file_magic_cmd=/usr/bin/file
+ lt_cv_file_magic_test_file=`echo /usr/lib/libc.so.*`
+ ;;
+ esac
+ else
+ lt_cv_deplibs_check_method=pass_all
+ fi
+ ;;
+
+gnu*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+hpux10.20* | hpux11*)
+ lt_cv_file_magic_cmd=/usr/bin/file
+ case $host_cpu in
+ ia64*)
+ lt_cv_deplibs_check_method='file_magic (s[[0-9]][[0-9]][[0-9]]|ELF-[[0-9]][[0-9]]) shared object file - IA64'
+ lt_cv_file_magic_test_file=/usr/lib/hpux32/libc.so
+ ;;
+ hppa*64*)
+ [lt_cv_deplibs_check_method='file_magic (s[0-9][0-9][0-9]|ELF-[0-9][0-9]) shared object file - PA-RISC [0-9].[0-9]']
+ lt_cv_file_magic_test_file=/usr/lib/pa20_64/libc.sl
+ ;;
+ *)
+ lt_cv_deplibs_check_method='file_magic (s[[0-9]][[0-9]][[0-9]]|PA-RISC[[0-9]].[[0-9]]) shared library'
+ lt_cv_file_magic_test_file=/usr/lib/libc.sl
+ ;;
+ esac
+ ;;
+
+interix[[3-9]]*)
+ # PIC code is broken on Interix 3.x, that's why |\.a not |_pic\.a here
+ lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so|\.a)$'
+ ;;
+
+irix5* | irix6* | nonstopux*)
+ case $LD in
+ *-32|*"-32 ") libmagic=32-bit;;
+ *-n32|*"-n32 ") libmagic=N32;;
+ *-64|*"-64 ") libmagic=64-bit;;
+ *) libmagic=never-match;;
+ esac
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+# This must be Linux ELF.
+linux* | k*bsd*-gnu)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ > /dev/null; then
+ lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|_pic\.a)$'
+ else
+ lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so|_pic\.a)$'
+ fi
+ ;;
+
+newos6*)
+ lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[ML]]SB (executable|dynamic lib)'
+ lt_cv_file_magic_cmd=/usr/bin/file
+ lt_cv_file_magic_test_file=/usr/lib/libnls.so
+ ;;
+
+*nto* | *qnx*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+openbsd*)
+ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|\.so|_pic\.a)$'
+ else
+ lt_cv_deplibs_check_method='match_pattern /lib[[^/]]+(\.so\.[[0-9]]+\.[[0-9]]+|_pic\.a)$'
+ fi
+ ;;
+
+osf3* | osf4* | osf5*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+rdos*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+solaris*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX* | sysv4*uw2*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+
+sysv4 | sysv4.3*)
+ case $host_vendor in
+ motorola)
+ lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[ML]]SB (shared object|dynamic lib) M[[0-9]][[0-9]]* Version [[0-9]]'
+ lt_cv_file_magic_test_file=`echo /usr/lib/libc.so*`
+ ;;
+ ncr)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+ sequent)
+ lt_cv_file_magic_cmd='/bin/file'
+ lt_cv_deplibs_check_method='file_magic ELF [[0-9]][[0-9]]*-bit [[LM]]SB (shared object|dynamic lib )'
+ ;;
+ sni)
+ lt_cv_file_magic_cmd='/bin/file'
+ lt_cv_deplibs_check_method="file_magic ELF [[0-9]][[0-9]]*-bit [[LM]]SB dynamic lib"
+ lt_cv_file_magic_test_file=/lib/libc.so
+ ;;
+ siemens)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+ pc)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+ esac
+ ;;
+
+tpf*)
+ lt_cv_deplibs_check_method=pass_all
+ ;;
+esac
+])
+file_magic_cmd=$lt_cv_file_magic_cmd
+deplibs_check_method=$lt_cv_deplibs_check_method
+test -z "$deplibs_check_method" && deplibs_check_method=unknown
+
+_LT_DECL([], [deplibs_check_method], [1],
+ [Method to check whether dependent libraries are shared objects])
+_LT_DECL([], [file_magic_cmd], [1],
+ [Command to use when deplibs_check_method == "file_magic"])
+])# _LT_CHECK_MAGIC_METHOD
+
+
+# LT_PATH_NM
+# ----------
+# find the pathname to a BSD- or MS-compatible name lister
+AC_DEFUN([LT_PATH_NM],
+[AC_REQUIRE([AC_PROG_CC])dnl
+AC_CACHE_CHECK([for BSD- or MS-compatible name lister (nm)], lt_cv_path_NM,
+[if test -n "$NM"; then
+ # Let the user override the test.
+ lt_cv_path_NM="$NM"
+else
+ lt_nm_to_check="${ac_tool_prefix}nm"
+ if test -n "$ac_tool_prefix" && test "$build" = "$host"; then
+ lt_nm_to_check="$lt_nm_to_check nm"
+ fi
+ for lt_tmp_nm in $lt_nm_to_check; do
+ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR
+ for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do
+ IFS="$lt_save_ifs"
+ test -z "$ac_dir" && ac_dir=.
+ tmp_nm="$ac_dir/$lt_tmp_nm"
+ if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then
+ # Check to see if the nm accepts a BSD-compat flag.
+ # Adding the `sed 1q' prevents false positives on HP-UX, which says:
+ # nm: unknown option "B" ignored
+ # Tru64's nm complains that /dev/null is an invalid object file
+ case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in
+ */dev/null* | *'Invalid file or object type'*)
+ lt_cv_path_NM="$tmp_nm -B"
+ break
+ ;;
+ *)
+ case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in
+ */dev/null*)
+ lt_cv_path_NM="$tmp_nm -p"
+ break
+ ;;
+ *)
+ lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but
+ continue # so that we can try to find one that supports BSD flags
+ ;;
+ esac
+ ;;
+ esac
+ fi
+ done
+ IFS="$lt_save_ifs"
+ done
+ : ${lt_cv_path_NM=no}
+fi])
+if test "$lt_cv_path_NM" != "no"; then
+ NM="$lt_cv_path_NM"
+else
+ # Didn't find any BSD compatible name lister, look for dumpbin.
+ AC_CHECK_TOOLS(DUMPBIN, ["dumpbin -symbols" "link -dump -symbols"], :)
+ AC_SUBST([DUMPBIN])
+ if test "$DUMPBIN" != ":"; then
+ NM="$DUMPBIN"
+ fi
+fi
+test -z "$NM" && NM=nm
+AC_SUBST([NM])
+_LT_DECL([], [NM], [1], [A BSD- or MS-compatible name lister])dnl
+
+AC_CACHE_CHECK([the name lister ($NM) interface], [lt_cv_nm_interface],
+ [lt_cv_nm_interface="BSD nm"
+ echo "int some_variable = 0;" > conftest.$ac_ext
+ (eval echo "\"\$as_me:__oline__: $ac_compile\"" >&AS_MESSAGE_LOG_FD)
+ (eval "$ac_compile" 2>conftest.err)
+ cat conftest.err >&AS_MESSAGE_LOG_FD
+ (eval echo "\"\$as_me:__oline__: $NM \\\"conftest.$ac_objext\\\"\"" >&AS_MESSAGE_LOG_FD)
+ (eval "$NM \"conftest.$ac_objext\"" 2>conftest.err > conftest.out)
+ cat conftest.err >&AS_MESSAGE_LOG_FD
+ (eval echo "\"\$as_me:__oline__: output\"" >&AS_MESSAGE_LOG_FD)
+ cat conftest.out >&AS_MESSAGE_LOG_FD
+ if $GREP 'External.*some_variable' conftest.out > /dev/null; then
+ lt_cv_nm_interface="MS dumpbin"
+ fi
+ rm -f conftest*])
+])# LT_PATH_NM
+
+# Old names:
+AU_ALIAS([AM_PROG_NM], [LT_PATH_NM])
+AU_ALIAS([AC_PROG_NM], [LT_PATH_NM])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AM_PROG_NM], [])
+dnl AC_DEFUN([AC_PROG_NM], [])
+
+
+# LT_LIB_M
+# --------
+# check for math library
+AC_DEFUN([LT_LIB_M],
+[AC_REQUIRE([AC_CANONICAL_HOST])dnl
+LIBM=
+case $host in
+*-*-beos* | *-*-cygwin* | *-*-pw32* | *-*-darwin*)
+ # These system don't have libm, or don't need it
+ ;;
+*-ncr-sysv4.3*)
+ AC_CHECK_LIB(mw, _mwvalidcheckl, LIBM="-lmw")
+ AC_CHECK_LIB(m, cos, LIBM="$LIBM -lm")
+ ;;
+*)
+ AC_CHECK_LIB(m, cos, LIBM="-lm")
+ ;;
+esac
+AC_SUBST([LIBM])
+])# LT_LIB_M
+
+# Old name:
+AU_ALIAS([AC_CHECK_LIBM], [LT_LIB_M])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_CHECK_LIBM], [])
+
+
+# _LT_COMPILER_NO_RTTI([TAGNAME])
+# -------------------------------
+m4_defun([_LT_COMPILER_NO_RTTI],
+[m4_require([_LT_TAG_COMPILER])dnl
+
+_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=
+
+if test "$GCC" = yes; then
+ _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=' -fno-builtin'
+
+ _LT_COMPILER_OPTION([if $compiler supports -fno-rtti -fno-exceptions],
+ lt_cv_prog_compiler_rtti_exceptions,
+ [-fno-rtti -fno-exceptions], [],
+ [_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)="$_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1) -fno-rtti -fno-exceptions"])
+fi
+_LT_TAGDECL([no_builtin_flag], [lt_prog_compiler_no_builtin_flag], [1],
+ [Compiler flag to turn off builtin functions])
+])# _LT_COMPILER_NO_RTTI
+
+
+# _LT_CMD_GLOBAL_SYMBOLS
+# ----------------------
+m4_defun([_LT_CMD_GLOBAL_SYMBOLS],
+[AC_REQUIRE([AC_CANONICAL_HOST])dnl
+AC_REQUIRE([AC_PROG_CC])dnl
+AC_REQUIRE([LT_PATH_NM])dnl
+AC_REQUIRE([LT_PATH_LD])dnl
+m4_require([_LT_DECL_SED])dnl
+m4_require([_LT_DECL_EGREP])dnl
+m4_require([_LT_TAG_COMPILER])dnl
+
+# Check for command to grab the raw symbol name followed by C symbol from nm.
+AC_MSG_CHECKING([command to parse $NM output from $compiler object])
+AC_CACHE_VAL([lt_cv_sys_global_symbol_pipe],
+[
+# These are sane defaults that work on at least a few old systems.
+# [They come from Ultrix. What could be older than Ultrix?!! ;)]
+
+# Character class describing NM global symbol codes.
+symcode='[[BCDEGRST]]'
+
+# Regexp to match symbols that can be accessed directly from C.
+sympat='\([[_A-Za-z]][[_A-Za-z0-9]]*\)'
+
+# Define system-specific variables.
+case $host_os in
+aix*)
+ symcode='[[BCDT]]'
+ ;;
+cygwin* | mingw* | pw32* | cegcc*)
+ symcode='[[ABCDGISTW]]'
+ ;;
+hpux*)
+ if test "$host_cpu" = ia64; then
+ symcode='[[ABCDEGRST]]'
+ fi
+ ;;
+irix* | nonstopux*)
+ symcode='[[BCDEGRST]]'
+ ;;
+osf*)
+ symcode='[[BCDEGQRST]]'
+ ;;
+solaris*)
+ symcode='[[BDRT]]'
+ ;;
+sco3.2v5*)
+ symcode='[[DT]]'
+ ;;
+sysv4.2uw2*)
+ symcode='[[DT]]'
+ ;;
+sysv5* | sco5v6* | unixware* | OpenUNIX*)
+ symcode='[[ABDT]]'
+ ;;
+sysv4)
+ symcode='[[DFNSTU]]'
+ ;;
+esac
+
+# If we're using GNU nm, then use its standard symbol codes.
+case `$NM -V 2>&1` in
+*GNU* | *'with BFD'*)
+ symcode='[[ABCDGIRSTW]]' ;;
+esac
+
+# Transform an extracted symbol line into a proper C declaration.
+# Some systems (esp. on ia64) link data and code symbols differently,
+# so use this general approach.
+lt_cv_sys_global_symbol_to_cdecl="sed -n -e 's/^T .* \(.*\)$/extern int \1();/p' -e 's/^$symcode* .* \(.*\)$/extern char \1;/p'"
+
+# Transform an extracted symbol line into symbol name and symbol address
+lt_cv_sys_global_symbol_to_c_name_address="sed -n -e 's/^: \([[^ ]]*\) $/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([[^ ]]*\) \([[^ ]]*\)$/ {\"\2\", (void *) \&\2},/p'"
+lt_cv_sys_global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \([[^ ]]*\) $/ {\\\"\1\\\", (void *) 0},/p' -e 's/^$symcode* \([[^ ]]*\) \(lib[[^ ]]*\)$/ {\"\2\", (void *) \&\2},/p' -e 's/^$symcode* \([[^ ]]*\) \([[^ ]]*\)$/ {\"lib\2\", (void *) \&\2},/p'"
+
+# Handle CRLF in mingw tool chain
+opt_cr=
+case $build_os in
+mingw*)
+ opt_cr=`$ECHO 'x\{0,1\}' | tr x '\015'` # option cr in regexp
+ ;;
+esac
+
+# Try without a prefix underscore, then with it.
+for ac_symprfx in "" "_"; do
+
+ # Transform symcode, sympat, and symprfx into a raw symbol and a C symbol.
+ symxfrm="\\1 $ac_symprfx\\2 \\2"
+
+ # Write the raw and C identifiers.
+ if test "$lt_cv_nm_interface" = "MS dumpbin"; then
+ # Fake it for dumpbin and say T for any non-static function
+ # and D for any global variable.
+ # Also find C++ and __fastcall symbols from MSVC++,
+ # which start with @ or ?.
+ lt_cv_sys_global_symbol_pipe="$AWK ['"\
+" {last_section=section; section=\$ 3};"\
+" /Section length .*#relocs.*(pick any)/{hide[last_section]=1};"\
+" \$ 0!~/External *\|/{next};"\
+" / 0+ UNDEF /{next}; / UNDEF \([^|]\)*()/{next};"\
+" {if(hide[section]) next};"\
+" {f=0}; \$ 0~/\(\).*\|/{f=1}; {printf f ? \"T \" : \"D \"};"\
+" {split(\$ 0, a, /\||\r/); split(a[2], s)};"\
+" s[1]~/^[@?]/{print s[1], s[1]; next};"\
+" s[1]~prfx {split(s[1],t,\"@\"); print t[1], substr(t[1],length(prfx))}"\
+" ' prfx=^$ac_symprfx]"
+ else
+ lt_cv_sys_global_symbol_pipe="sed -n -e 's/^.*[[ ]]\($symcode$symcode*\)[[ ]][[ ]]*$ac_symprfx$sympat$opt_cr$/$symxfrm/p'"
+ fi
+
+ # Check to see that the pipe works correctly.
+ pipe_works=no
+
+ rm -f conftest*
+ cat > conftest.$ac_ext <<_LT_EOF
+#ifdef __cplusplus
+extern "C" {
+#endif
+char nm_test_var;
+void nm_test_func(void);
+void nm_test_func(void){}
+#ifdef __cplusplus
+}
+#endif
+int main(){nm_test_var='a';nm_test_func();return(0);}
+_LT_EOF
+
+ if AC_TRY_EVAL(ac_compile); then
+ # Now try to grab the symbols.
+ nlist=conftest.nm
+ if AC_TRY_EVAL(NM conftest.$ac_objext \| $lt_cv_sys_global_symbol_pipe \> $nlist) && test -s "$nlist"; then
+ # Try sorting and uniquifying the output.
+ if sort "$nlist" | uniq > "$nlist"T; then
+ mv -f "$nlist"T "$nlist"
+ else
+ rm -f "$nlist"T
+ fi
+
+ # Make sure that we snagged all the symbols we need.
+ if $GREP ' nm_test_var$' "$nlist" >/dev/null; then
+ if $GREP ' nm_test_func$' "$nlist" >/dev/null; then
+ cat <<_LT_EOF > conftest.$ac_ext
+#ifdef __cplusplus
+extern "C" {
+#endif
+
+_LT_EOF
+ # Now generate the symbol file.
+ eval "$lt_cv_sys_global_symbol_to_cdecl"' < "$nlist" | $GREP -v main >> conftest.$ac_ext'
+
+ cat <<_LT_EOF >> conftest.$ac_ext
+
+/* The mapping between symbol names and symbols. */
+const struct {
+ const char *name;
+ void *address;
+}
+lt__PROGRAM__LTX_preloaded_symbols[[]] =
+{
+ { "@PROGRAM@", (void *) 0 },
+_LT_EOF
+ $SED "s/^$symcode$symcode* \(.*\) \(.*\)$/ {\"\2\", (void *) \&\2},/" < "$nlist" | $GREP -v main >> conftest.$ac_ext
+ cat <<\_LT_EOF >> conftest.$ac_ext
+ {0, (void *) 0}
+};
+
+/* This works around a problem in FreeBSD linker */
+#ifdef FREEBSD_WORKAROUND
+static const void *lt_preloaded_setup() {
+ return lt__PROGRAM__LTX_preloaded_symbols;
+}
+#endif
+
+#ifdef __cplusplus
+}
+#endif
+_LT_EOF
+ # Now try linking the two files.
+ mv conftest.$ac_objext conftstm.$ac_objext
+ lt_save_LIBS="$LIBS"
+ lt_save_CFLAGS="$CFLAGS"
+ LIBS="conftstm.$ac_objext"
+ CFLAGS="$CFLAGS$_LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)"
+ if AC_TRY_EVAL(ac_link) && test -s conftest${ac_exeext}; then
+ pipe_works=yes
+ fi
+ LIBS="$lt_save_LIBS"
+ CFLAGS="$lt_save_CFLAGS"
+ else
+ echo "cannot find nm_test_func in $nlist" >&AS_MESSAGE_LOG_FD
+ fi
+ else
+ echo "cannot find nm_test_var in $nlist" >&AS_MESSAGE_LOG_FD
+ fi
+ else
+ echo "cannot run $lt_cv_sys_global_symbol_pipe" >&AS_MESSAGE_LOG_FD
+ fi
+ else
+ echo "$progname: failed program was:" >&AS_MESSAGE_LOG_FD
+ cat conftest.$ac_ext >&5
+ fi
+ rm -rf conftest* conftst*
+
+ # Do not use the global_symbol_pipe unless it works.
+ if test "$pipe_works" = yes; then
+ break
+ else
+ lt_cv_sys_global_symbol_pipe=
+ fi
+done
+])
+if test -z "$lt_cv_sys_global_symbol_pipe"; then
+ lt_cv_sys_global_symbol_to_cdecl=
+fi
+if test -z "$lt_cv_sys_global_symbol_pipe$lt_cv_sys_global_symbol_to_cdecl"; then
+ AC_MSG_RESULT(failed)
+else
+ AC_MSG_RESULT(ok)
+fi
+
+_LT_DECL([global_symbol_pipe], [lt_cv_sys_global_symbol_pipe], [1],
+ [Take the output of nm and produce a listing of raw symbols and C names])
+_LT_DECL([global_symbol_to_cdecl], [lt_cv_sys_global_symbol_to_cdecl], [1],
+ [Transform the output of nm in a proper C declaration])
+_LT_DECL([global_symbol_to_c_name_address],
+ [lt_cv_sys_global_symbol_to_c_name_address], [1],
+ [Transform the output of nm in a C name address pair])
+_LT_DECL([global_symbol_to_c_name_address_lib_prefix],
+ [lt_cv_sys_global_symbol_to_c_name_address_lib_prefix], [1],
+ [Transform the output of nm in a C name address pair when lib prefix is needed])
+]) # _LT_CMD_GLOBAL_SYMBOLS
+
+
+# _LT_COMPILER_PIC([TAGNAME])
+# ---------------------------
+m4_defun([_LT_COMPILER_PIC],
+[m4_require([_LT_TAG_COMPILER])dnl
+_LT_TAGVAR(lt_prog_compiler_wl, $1)=
+_LT_TAGVAR(lt_prog_compiler_pic, $1)=
+_LT_TAGVAR(lt_prog_compiler_static, $1)=
+
+AC_MSG_CHECKING([for $compiler option to produce PIC])
+m4_if([$1], [CXX], [
+ # C++ specific cases for pic, static, wl, etc.
+ if test "$GXX" = yes; then
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-static'
+
+ case $host_os in
+ aix*)
+ # All AIX code is PIC.
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ ;;
+ m68k)
+ # FIXME: we need at least 68020 code to build shared libraries, but
+ # adding the `-m68020' flag to GCC prevents building anything better,
+ # like `-m68040'.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-m68020 -resident32 -malways-restore-a4'
+ ;;
+ esac
+ ;;
+
+ beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*)
+ # PIC is the default for these OSes.
+ ;;
+ mingw* | cygwin* | os2* | pw32* | cegcc*)
+ # This hack is so that the source file can tell whether it is being
+ # built for inclusion in a dll (and should export symbols for example).
+ # Although the cygwin gcc ignores -fPIC, still need this for old-style
+ # (--disable-auto-import) libraries
+ m4_if([$1], [GCJ], [],
+ [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT'])
+ ;;
+ darwin* | rhapsody*)
+ # PIC is the default on this platform
+ # Common symbols not allowed in MH_DYLIB files
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fno-common'
+ ;;
+ *djgpp*)
+ # DJGPP does not support shared libraries at all
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)=
+ ;;
+ interix[[3-9]]*)
+ # Interix 3.x gcc -fpic/-fPIC options generate broken code.
+ # Instead, we relocate shared libraries at runtime.
+ ;;
+ sysv4*MP*)
+ if test -d /usr/nec; then
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)=-Kconform_pic
+ fi
+ ;;
+ hpux*)
+ # PIC is the default for 64-bit PA HP-UX, but not for 32-bit
+ # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag
+ # sets the default TLS model and affects inlining.
+ case $host_cpu in
+ hppa*64*)
+ ;;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ ;;
+ esac
+ ;;
+ *qnx* | *nto*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared'
+ ;;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ ;;
+ esac
+ else
+ case $host_os in
+ aix[[4-9]]*)
+ # All AIX code is PIC.
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ else
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-bnso -bI:/lib/syscalls.exp'
+ fi
+ ;;
+ chorus*)
+ case $cc_basename in
+ cxch68*)
+ # Green Hills C++ Compiler
+ # _LT_TAGVAR(lt_prog_compiler_static, $1)="--no_auto_instantiation -u __main -u __premain -u _abort -r $COOL_DIR/lib/libOrb.a $MVME_DIR/lib/CC/libC.a $MVME_DIR/lib/classix/libcx.s.a"
+ ;;
+ esac
+ ;;
+ dgux*)
+ case $cc_basename in
+ ec++*)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ ;;
+ ghcx*)
+ # Green Hills C++ Compiler
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ freebsd* | dragonfly*)
+ # FreeBSD uses GNU C++
+ ;;
+ hpux9* | hpux10* | hpux11*)
+ case $cc_basename in
+ CC*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive'
+ if test "$host_cpu" != ia64; then
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z'
+ fi
+ ;;
+ aCC*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive'
+ case $host_cpu in
+ hppa*64*|ia64*)
+ # +Z the default
+ ;;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z'
+ ;;
+ esac
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ interix*)
+ # This is c89, which is MS Visual C++ (no shared libs)
+ # Anyone wants to do a port?
+ ;;
+ irix5* | irix6* | nonstopux*)
+ case $cc_basename in
+ CC*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
+ # CC pic flag -KPIC is the default.
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ linux* | k*bsd*-gnu)
+ case $cc_basename in
+ KCC*)
+ # KAI C++ Compiler
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='--backend -Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ ;;
+ ecpc* )
+ # old Intel C++ for x86_64 which still supported -KPIC.
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-static'
+ ;;
+ icpc* )
+ # Intel C++, used to be incompatible with GCC.
+ # ICC 10 doesn't accept -KPIC any more.
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-static'
+ ;;
+ pgCC* | pgcpp*)
+ # Portland Group C++ compiler
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+ cxx*)
+ # Compaq C++
+ # Make sure the PIC flag is empty. It appears that all Alpha
+ # Linux and Compaq Tru64 Unix objects are PIC.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)=
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
+ ;;
+ xlc* | xlC*)
+ # IBM XL 8.0 on PPC
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-qpic'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-qstaticlink'
+ ;;
+ *)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C++ 5.9
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld '
+ ;;
+ esac
+ ;;
+ esac
+ ;;
+ lynxos*)
+ ;;
+ m88k*)
+ ;;
+ mvs*)
+ case $cc_basename in
+ cxx*)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-W c,exportall'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ netbsd*)
+ ;;
+ *qnx* | *nto*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared'
+ ;;
+ osf3* | osf4* | osf5*)
+ case $cc_basename in
+ KCC*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='--backend -Wl,'
+ ;;
+ RCC*)
+ # Rational C++ 2.4.1
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic'
+ ;;
+ cxx*)
+ # Digital/Compaq C++
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ # Make sure the PIC flag is empty. It appears that all Alpha
+ # Linux and Compaq Tru64 Unix objects are PIC.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)=
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ psos*)
+ ;;
+ solaris*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.2, 5.x and Centerline C++
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld '
+ ;;
+ gcx*)
+ # Green Hills C++ Compiler
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ sunos4*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.x
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+ lcc*)
+ # Lucid
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*)
+ case $cc_basename in
+ CC*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+ esac
+ ;;
+ tandem*)
+ case $cc_basename in
+ NCC*)
+ # NonStop-UX NCC 3.20
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ ;;
+ *)
+ ;;
+ esac
+ ;;
+ vxworks*)
+ ;;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no
+ ;;
+ esac
+ fi
+],
+[
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-static'
+
+ case $host_os in
+ aix*)
+ # All AIX code is PIC.
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ ;;
+ m68k)
+ # FIXME: we need at least 68020 code to build shared libraries, but
+ # adding the `-m68020' flag to GCC prevents building anything better,
+ # like `-m68040'.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-m68020 -resident32 -malways-restore-a4'
+ ;;
+ esac
+ ;;
+
+ beos* | irix5* | irix6* | nonstopux* | osf3* | osf4* | osf5*)
+ # PIC is the default for these OSes.
+ ;;
+
+ mingw* | cygwin* | pw32* | os2* | cegcc*)
+ # This hack is so that the source file can tell whether it is being
+ # built for inclusion in a dll (and should export symbols for example).
+ # Although the cygwin gcc ignores -fPIC, still need this for old-style
+ # (--disable-auto-import) libraries
+ m4_if([$1], [GCJ], [],
+ [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT'])
+ ;;
+
+ darwin* | rhapsody*)
+ # PIC is the default on this platform
+ # Common symbols not allowed in MH_DYLIB files
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fno-common'
+ ;;
+
+ hpux*)
+ # PIC is the default for 64-bit PA HP-UX, but not for 32-bit
+ # PA HP-UX. On IA64 HP-UX, PIC is the default but the pic flag
+ # sets the default TLS model and affects inlining.
+ case $host_cpu in
+ hppa*64*)
+ # +Z the default
+ ;;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ ;;
+ esac
+ ;;
+
+ interix[[3-9]]*)
+ # Interix 3.x gcc -fpic/-fPIC options generate broken code.
+ # Instead, we relocate shared libraries at runtime.
+ ;;
+
+ msdosdjgpp*)
+ # Just because we use GCC doesn't mean we suddenly get shared libraries
+ # on systems that don't support them.
+ _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no
+ enable_shared=no
+ ;;
+
+ *nto* | *qnx*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared'
+ ;;
+
+ sysv4*MP*)
+ if test -d /usr/nec; then
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)=-Kconform_pic
+ fi
+ ;;
+
+ *)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ ;;
+ esac
+ else
+ # PORTME Check for flag to pass linker flags through the system compiler.
+ case $host_os in
+ aix*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ if test "$host_cpu" = ia64; then
+ # AIX 5 now supports IA64 processor
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ else
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-bnso -bI:/lib/syscalls.exp'
+ fi
+ ;;
+
+ mingw* | cygwin* | pw32* | os2* | cegcc*)
+ # This hack is so that the source file can tell whether it is being
+ # built for inclusion in a dll (and should export symbols for example).
+ m4_if([$1], [GCJ], [],
+ [_LT_TAGVAR(lt_prog_compiler_pic, $1)='-DDLL_EXPORT'])
+ ;;
+
+ hpux9* | hpux10* | hpux11*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ # PIC is the default for IA64 HP-UX and 64-bit HP-UX, but
+ # not for PA HP-UX.
+ case $host_cpu in
+ hppa*64*|ia64*)
+ # +Z the default
+ ;;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='+Z'
+ ;;
+ esac
+ # Is there a better lt_prog_compiler_static that works with the bundled CC?
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='${wl}-a ${wl}archive'
+ ;;
+
+ irix5* | irix6* | nonstopux*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ # PIC (with -KPIC) is the default.
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
+ ;;
+
+ linux* | k*bsd*-gnu)
+ case $cc_basename in
+ # old Intel for x86_64 which still supported -KPIC.
+ ecc*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-static'
+ ;;
+ # icc used to be incompatible with GCC.
+ # ICC 10 doesn't accept -KPIC any more.
+ icc* | ifort*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-static'
+ ;;
+ # Lahey Fortran 8.1.
+ lf95*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='--shared'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='--static'
+ ;;
+ pgcc* | pgf77* | pgf90* | pgf95*)
+ # Portland Group compilers (*not* the Pentium gcc compiler,
+ # which looks to be a dead project)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fpic'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+ ccc*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ # All Alpha code is PIC.
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
+ ;;
+ xl*)
+ # IBM XL C 8.0/Fortran 10.1 on PPC
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-qpic'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-qstaticlink'
+ ;;
+ *)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C 5.9
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ ;;
+ *Sun\ F*)
+ # Sun Fortran 8.3 passes all unrecognized flags to the linker
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)=''
+ ;;
+ esac
+ ;;
+ esac
+ ;;
+
+ newsos6)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+
+ *nto* | *qnx*)
+ # QNX uses GNU C++, but need to define -shared option too, otherwise
+ # it will coredump.
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-fPIC -shared'
+ ;;
+
+ osf3* | osf4* | osf5*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ # All OSF/1 code is PIC.
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
+ ;;
+
+ rdos*)
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-non_shared'
+ ;;
+
+ solaris*)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ case $cc_basename in
+ f77* | f90* | f95*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld ';;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,';;
+ esac
+ ;;
+
+ sunos4*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Qoption ld '
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-PIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+
+ sysv4 | sysv4.2uw2* | sysv4.3*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+
+ sysv4*MP*)
+ if test -d /usr/nec ;then
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-Kconform_pic'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ fi
+ ;;
+
+ sysv5* | unixware* | sco3.2v5* | sco5v6* | OpenUNIX*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-KPIC'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+
+ unicos*)
+ _LT_TAGVAR(lt_prog_compiler_wl, $1)='-Wl,'
+ _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no
+ ;;
+
+ uts4*)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)='-pic'
+ _LT_TAGVAR(lt_prog_compiler_static, $1)='-Bstatic'
+ ;;
+
+ *)
+ _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no
+ ;;
+ esac
+ fi
+])
+case $host_os in
+ # For platforms which do not support PIC, -DPIC is meaningless:
+ *djgpp*)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)=
+ ;;
+ *)
+ _LT_TAGVAR(lt_prog_compiler_pic, $1)="$_LT_TAGVAR(lt_prog_compiler_pic, $1)@&t at m4_if([$1],[],[ -DPIC],[m4_if([$1],[CXX],[ -DPIC],[])])"
+ ;;
+esac
+AC_MSG_RESULT([$_LT_TAGVAR(lt_prog_compiler_pic, $1)])
+_LT_TAGDECL([wl], [lt_prog_compiler_wl], [1],
+ [How to pass a linker flag through the compiler])
+
+#
+# Check to make sure the PIC flag actually works.
+#
+if test -n "$_LT_TAGVAR(lt_prog_compiler_pic, $1)"; then
+ _LT_COMPILER_OPTION([if $compiler PIC flag $_LT_TAGVAR(lt_prog_compiler_pic, $1) works],
+ [_LT_TAGVAR(lt_cv_prog_compiler_pic_works, $1)],
+ [$_LT_TAGVAR(lt_prog_compiler_pic, $1)@&t at m4_if([$1],[],[ -DPIC],[m4_if([$1],[CXX],[ -DPIC],[])])], [],
+ [case $_LT_TAGVAR(lt_prog_compiler_pic, $1) in
+ "" | " "*) ;;
+ *) _LT_TAGVAR(lt_prog_compiler_pic, $1)=" $_LT_TAGVAR(lt_prog_compiler_pic, $1)" ;;
+ esac],
+ [_LT_TAGVAR(lt_prog_compiler_pic, $1)=
+ _LT_TAGVAR(lt_prog_compiler_can_build_shared, $1)=no])
+fi
+_LT_TAGDECL([pic_flag], [lt_prog_compiler_pic], [1],
+ [Additional compiler flags for building library objects])
+
+#
+# Check to make sure the static flag actually works.
+#
+wl=$_LT_TAGVAR(lt_prog_compiler_wl, $1) eval lt_tmp_static_flag=\"$_LT_TAGVAR(lt_prog_compiler_static, $1)\"
+_LT_LINKER_OPTION([if $compiler static flag $lt_tmp_static_flag works],
+ _LT_TAGVAR(lt_cv_prog_compiler_static_works, $1),
+ $lt_tmp_static_flag,
+ [],
+ [_LT_TAGVAR(lt_prog_compiler_static, $1)=])
+_LT_TAGDECL([link_static_flag], [lt_prog_compiler_static], [1],
+ [Compiler flag to prevent dynamic linking])
+])# _LT_COMPILER_PIC
+
+
+# _LT_LINKER_SHLIBS([TAGNAME])
+# ----------------------------
+# See if the linker supports building shared libraries.
+m4_defun([_LT_LINKER_SHLIBS],
+[AC_REQUIRE([LT_PATH_LD])dnl
+AC_REQUIRE([LT_PATH_NM])dnl
+m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+m4_require([_LT_DECL_EGREP])dnl
+m4_require([_LT_DECL_SED])dnl
+m4_require([_LT_CMD_GLOBAL_SYMBOLS])dnl
+m4_require([_LT_TAG_COMPILER])dnl
+AC_MSG_CHECKING([whether the $compiler linker ($LD) supports shared libraries])
+m4_if([$1], [CXX], [
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
+ case $host_os in
+ aix[[4-9]]*)
+ # If we're using GNU nm, then we don't want the "-C" option.
+ # -C means demangle to AIX nm, but means don't demangle with GNU nm
+ if $NM -V 2>&1 | $GREP 'GNU' > /dev/null; then
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && ([substr](\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ else
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && ([substr](\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ fi
+ ;;
+ pw32*)
+ _LT_TAGVAR(export_symbols_cmds, $1)="$ltdll_cmds"
+ ;;
+ cygwin* | mingw* | cegcc*)
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[[BCDGRS]][[ ]]/s/.*[[ ]]\([[^ ]]*\)/\1 DATA/;/^.*[[ ]]__nm__/s/^.*[[ ]]__nm__\([[^ ]]*\)[[ ]][[^ ]]*/\1 DATA/;/^I[[ ]]/d;/^[[AITW]][[ ]]/s/.* //'\'' | sort | uniq > $export_symbols'
+ ;;
+ *)
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
+ ;;
+ esac
+ _LT_TAGVAR(exclude_expsyms, $1)=['_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*']
+], [
+ runpath_var=
+ _LT_TAGVAR(allow_undefined_flag, $1)=
+ _LT_TAGVAR(always_export_symbols, $1)=no
+ _LT_TAGVAR(archive_cmds, $1)=
+ _LT_TAGVAR(archive_expsym_cmds, $1)=
+ _LT_TAGVAR(compiler_needs_object, $1)=no
+ _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=no
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)=
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED '\''s/.* //'\'' | sort | uniq > $export_symbols'
+ _LT_TAGVAR(hardcode_automatic, $1)=no
+ _LT_TAGVAR(hardcode_direct, $1)=no
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=no
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)=
+ _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)=
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=
+ _LT_TAGVAR(hardcode_minus_L, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported
+ _LT_TAGVAR(inherit_rpath, $1)=no
+ _LT_TAGVAR(link_all_deplibs, $1)=unknown
+ _LT_TAGVAR(module_cmds, $1)=
+ _LT_TAGVAR(module_expsym_cmds, $1)=
+ _LT_TAGVAR(old_archive_from_new_cmds, $1)=
+ _LT_TAGVAR(old_archive_from_expsyms_cmds, $1)=
+ _LT_TAGVAR(thread_safe_flag_spec, $1)=
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=
+ # include_expsyms should be a list of space-separated symbols to be *always*
+ # included in the symbol list
+ _LT_TAGVAR(include_expsyms, $1)=
+ # exclude_expsyms can be an extended regexp of symbols to exclude
+ # it will be wrapped by ` (' and `)$', so one must not match beginning or
+ # end of line. Example: `a|bc|.*d.*' will exclude the symbols `a' and `bc',
+ # as well as any symbol that contains `d'.
+ _LT_TAGVAR(exclude_expsyms, $1)=['_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*']
+ # Although _GLOBAL_OFFSET_TABLE_ is a valid symbol C name, most a.out
+ # platforms (ab)use it in PIC code, but their linkers get confused if
+ # the symbol is explicitly referenced. Since portable code cannot
+ # rely on this symbol name, it's probably fine to never include it in
+ # preloaded symbol tables.
+ # Exclude shared library initialization/finalization symbols.
+dnl Note also adjust exclude_expsyms for C++ above.
+ extract_expsyms_cmds=
+
+ case $host_os in
+ cygwin* | mingw* | pw32* | cegcc*)
+ # FIXME: the MSVC++ port hasn't been tested in a loooong time
+ # When not using gcc, we currently assume that we are using
+ # Microsoft Visual C++.
+ if test "$GCC" != yes; then
+ with_gnu_ld=no
+ fi
+ ;;
+ interix*)
+ # we just hope/assume this is gcc and not c89 (= MSVC++)
+ with_gnu_ld=yes
+ ;;
+ openbsd*)
+ with_gnu_ld=no
+ ;;
+ esac
+
+ _LT_TAGVAR(ld_shlibs, $1)=yes
+ if test "$with_gnu_ld" = yes; then
+ # If archive_cmds runs LD, not CC, wlarc should be empty
+ wlarc='${wl}'
+
+ # Set some defaults for GNU ld with shared library support. These
+ # are reset later if shared libraries are not supported. Putting them
+ # here allows them to be overridden if necessary.
+ runpath_var=LD_RUN_PATH
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
+ # ancient GNU ld didn't support --whole-archive et. al.
+ if $LD --help 2>&1 | $GREP 'no-whole-archive' > /dev/null; then
+ _LT_TAGVAR(whole_archive_flag_spec, $1)="$wlarc"'--whole-archive$convenience '"$wlarc"'--no-whole-archive'
+ else
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=
+ fi
+ supports_anon_versioning=no
+ case `$LD -v 2>&1` in
+ *\ [[01]].* | *\ 2.[[0-9]].* | *\ 2.10.*) ;; # catch versions < 2.11
+ *\ 2.11.93.0.2\ *) supports_anon_versioning=yes ;; # RH7.3 ...
+ *\ 2.11.92.0.12\ *) supports_anon_versioning=yes ;; # Mandrake 8.2 ...
+ *\ 2.11.*) ;; # other 2.11 versions
+ *) supports_anon_versioning=yes ;;
+ esac
+
+ # See if GNU ld supports shared libraries.
+ case $host_os in
+ aix[[3-9]]*)
+ # On AIX/PPC, the GNU linker is very broken
+ if test "$host_cpu" != ia64; then
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ cat <<_LT_EOF 1>&2
+
+*** Warning: the GNU linker, at least up to release 2.9.1, is reported
+*** to be unable to reliably create shared libraries on AIX.
+*** Therefore, libtool is disabling shared libraries support. If you
+*** really care for shared libraries, you may want to modify your PATH
+*** so that a non-GNU linker is found, and then restart.
+
+_LT_EOF
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)=''
+ ;;
+ m68k)
+ _LT_TAGVAR(archive_cmds, $1)='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ ;;
+ esac
+ ;;
+
+ beos*)
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ _LT_TAGVAR(allow_undefined_flag, $1)=unsupported
+ # Joseph Beckenbach <jrb3 at best.com> says some releases of gcc
+ # support --undefined. This deserves some investigation. FIXME
+ _LT_TAGVAR(archive_cmds, $1)='$CC -nostart $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+
+ cygwin* | mingw* | pw32* | cegcc*)
+ # _LT_TAGVAR(hardcode_libdir_flag_spec, $1) is actually meaningless,
+ # as there is no search path for DLLs.
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(allow_undefined_flag, $1)=unsupported
+ _LT_TAGVAR(always_export_symbols, $1)=no
+ _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=yes
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM $libobjs $convenience | $global_symbol_pipe | $SED -e '\''/^[[BCDGRS]][[ ]]/s/.*[[ ]]\([[^ ]]*\)/\1 DATA/'\'' | $SED -e '\''/^[[AITW]][[ ]]/s/.*[[ ]]//'\'' | sort | uniq > $export_symbols'
+
+ if $LD --help 2>&1 | $GREP 'auto-import' > /dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ # If the export-symbols file already is a .def file (1st line
+ # is EXPORTS), use it as is; otherwise, prepend...
+ _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
+ cp $export_symbols $output_objdir/$soname.def;
+ else
+ echo EXPORTS > $output_objdir/$soname.def;
+ cat $export_symbols >> $output_objdir/$soname.def;
+ fi~
+ $CC -shared $output_objdir/$soname.def $libobjs $deplibs $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+
+ interix[[3-9]]*)
+ _LT_TAGVAR(hardcode_direct, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ # Hack: On Interix 3.x, we cannot compile PIC because of a broken gcc.
+ # Instead, shared libraries are loaded at an image base (0x10000000 by
+ # default) and relocated if they conflict, which is a slow very memory
+ # consuming and fragmenting process. To avoid this, we pick a random,
+ # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link
+ # time. Moving up from 0x10000000 also allows more sbrk(2) space.
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ ;;
+
+ gnu* | linux* | tpf* | k*bsd*-gnu)
+ tmp_diet=no
+ if test "$host_os" = linux-dietlibc; then
+ case $cc_basename in
+ diet\ *) tmp_diet=yes;; # linux-dietlibc with static linking (!diet-dyn)
+ esac
+ fi
+ if $LD --help 2>&1 | $EGREP ': supported targets:.* elf' > /dev/null \
+ && test "$tmp_diet" = no
+ then
+ tmp_addflag=
+ tmp_sharedflag='-shared'
+ case $cc_basename,$host_cpu in
+ pgcc*) # Portland Group C compiler
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ tmp_addflag=' $pic_flag'
+ ;;
+ pgf77* | pgf90* | pgf95*) # Portland Group f77 and f90 compilers
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ tmp_addflag=' $pic_flag -Mnomain' ;;
+ ecc*,ia64* | icc*,ia64*) # Intel C compiler on ia64
+ tmp_addflag=' -i_dynamic' ;;
+ efc*,ia64* | ifort*,ia64*) # Intel Fortran compiler on ia64
+ tmp_addflag=' -i_dynamic -nofor_main' ;;
+ ifc* | ifort*) # Intel Fortran compiler
+ tmp_addflag=' -nofor_main' ;;
+ lf95*) # Lahey Fortran 8.1
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=
+ tmp_sharedflag='--shared' ;;
+ xl[[cC]]*) # IBM XL C 8.0 on PPC (deal with xlf below)
+ tmp_sharedflag='-qmkshrobj'
+ tmp_addflag= ;;
+ esac
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*) # Sun C 5.9
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ _LT_TAGVAR(compiler_needs_object, $1)=yes
+ tmp_sharedflag='-G' ;;
+ *Sun\ F*) # Sun Fortran 8.3
+ tmp_sharedflag='-G' ;;
+ esac
+ _LT_TAGVAR(archive_cmds, $1)='$CC '"$tmp_sharedflag""$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+
+ if test "x$supports_anon_versioning" = xyes; then
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $output_objdir/$libname.ver~
+ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~
+ echo "local: *; };" >> $output_objdir/$libname.ver~
+ $CC '"$tmp_sharedflag""$tmp_addflag"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib'
+ fi
+
+ case $cc_basename in
+ xlf*)
+ # IBM XL Fortran 10.1 on PPC cannot create shared libs itself
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='--whole-archive$convenience --no-whole-archive'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)=
+ _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='-rpath $libdir'
+ _LT_TAGVAR(archive_cmds, $1)='$LD -shared $libobjs $deplibs $compiler_flags -soname $soname -o $lib'
+ if test "x$supports_anon_versioning" = xyes; then
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $output_objdir/$libname.ver~
+ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~
+ echo "local: *; };" >> $output_objdir/$libname.ver~
+ $LD -shared $libobjs $deplibs $compiler_flags -soname $soname -version-script $output_objdir/$libname.ver -o $lib'
+ fi
+ ;;
+ esac
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+
+ netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable $libobjs $deplibs $linker_flags -o $lib'
+ wlarc=
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ fi
+ ;;
+
+ solaris*)
+ if $LD -v 2>&1 | $GREP 'BFD 2\.8' > /dev/null; then
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ cat <<_LT_EOF 1>&2
+
+*** Warning: The releases 2.8.* of the GNU linker cannot reliably
+*** create shared libraries on Solaris systems. Therefore, libtool
+*** is disabling shared libraries support. We urge you to upgrade GNU
+*** binutils to release 2.9.1 or newer. Another option is to modify
+*** your PATH or compiler configuration so that the native linker is
+*** used, and then restart.
+
+_LT_EOF
+ elif $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+
+ sysv5* | sco3.2v5* | sco5v6* | unixware* | OpenUNIX*)
+ case `$LD -v 2>&1` in
+ *\ [[01]].* | *\ 2.[[0-9]].* | *\ 2.1[[0-5]].*)
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ cat <<_LT_EOF 1>&2
+
+*** Warning: Releases of the GNU linker prior to 2.16.91.0.3 can not
+*** reliably create shared libraries on SCO systems. Therefore, libtool
+*** is disabling shared libraries support. We urge you to upgrade GNU
+*** binutils to release 2.16.91.0.3 or newer. Another option is to modify
+*** your PATH or compiler configuration so that the native linker is
+*** used, and then restart.
+
+_LT_EOF
+ ;;
+ *)
+ # For security reasons, it is highly recommended that you always
+ # use absolute paths for naming shared libraries, and exclude the
+ # DT_RUNPATH tag from executables and libraries. But doing so
+ # requires that you compile everything twice, which is a pain.
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+ esac
+ ;;
+
+ sunos4*)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -assert pure-text -Bshareable -o $lib $libobjs $deplibs $linker_flags'
+ wlarc=
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ *)
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+ esac
+
+ if test "$_LT_TAGVAR(ld_shlibs, $1)" = no; then
+ runpath_var=
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)=
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)=
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=
+ fi
+ else
+ # PORTME fill in a description of your system's linker (not GNU ld)
+ case $host_os in
+ aix3*)
+ _LT_TAGVAR(allow_undefined_flag, $1)=unsupported
+ _LT_TAGVAR(always_export_symbols, $1)=yes
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$LD -o $output_objdir/$soname $libobjs $deplibs $linker_flags -bE:$export_symbols -T512 -H512 -bM:SRE~$AR $AR_FLAGS $lib $output_objdir/$soname'
+ # Note: this linker hardcodes the directories in LIBPATH if there
+ # are no directories specified by -L.
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ if test "$GCC" = yes && test -z "$lt_prog_compiler_static"; then
+ # Neither direct hardcoding nor static linking is supported with a
+ # broken collect2.
+ _LT_TAGVAR(hardcode_direct, $1)=unsupported
+ fi
+ ;;
+
+ aix[[4-9]]*)
+ if test "$host_cpu" = ia64; then
+ # On IA64, the linker does run time linking by default, so we don't
+ # have to do anything special.
+ aix_use_runtimelinking=no
+ exp_sym_flag='-Bexport'
+ no_entry_flag=""
+ else
+ # If we're using GNU nm, then we don't want the "-C" option.
+ # -C means demangle to AIX nm, but means don't demangle with GNU nm
+ if $NM -V 2>&1 | $GREP 'GNU' > /dev/null; then
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM -Bpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && ([substr](\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ else
+ _LT_TAGVAR(export_symbols_cmds, $1)='$NM -BCpg $libobjs $convenience | awk '\''{ if (((\$ 2 == "T") || (\$ 2 == "D") || (\$ 2 == "B")) && ([substr](\$ 3,1,1) != ".")) { print \$ 3 } }'\'' | sort -u > $export_symbols'
+ fi
+ aix_use_runtimelinking=no
+
+ # Test if we are trying to use run time linking or normal
+ # AIX style linking. If -brtl is somewhere in LDFLAGS, we
+ # need to do runtime linking.
+ case $host_os in aix4.[[23]]|aix4.[[23]].*|aix[[5-9]]*)
+ for ld_flag in $LDFLAGS; do
+ if (test $ld_flag = "-brtl" || test $ld_flag = "-Wl,-brtl"); then
+ aix_use_runtimelinking=yes
+ break
+ fi
+ done
+ ;;
+ esac
+
+ exp_sym_flag='-bexport'
+ no_entry_flag='-bnoentry'
+ fi
+
+ # When large executables or shared objects are built, AIX ld can
+ # have problems creating the table of contents. If linking a library
+ # or program results in "error TOC overflow" add -mminimal-toc to
+ # CXXFLAGS/CFLAGS for g++/gcc. In the cases where that is not
+ # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS.
+
+ _LT_TAGVAR(archive_cmds, $1)=''
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=':'
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ _LT_TAGVAR(file_list_spec, $1)='${wl}-f,'
+
+ if test "$GCC" = yes; then
+ case $host_os in aix4.[[012]]|aix4.[[012]].*)
+ # We only want to do this on AIX 4.2 and lower, the check
+ # below for broken collect2 doesn't work under 4.3+
+ collect2name=`${CC} -print-prog-name=collect2`
+ if test -f "$collect2name" &&
+ strings "$collect2name" | $GREP resolve_lib_name >/dev/null
+ then
+ # We have reworked collect2
+ :
+ else
+ # We have old collect2
+ _LT_TAGVAR(hardcode_direct, $1)=unsupported
+ # It fails to find uninstalled libraries when the uninstalled
+ # path is not listed in the libpath. Setting hardcode_minus_L
+ # to unsupported forces relinking
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=
+ fi
+ ;;
+ esac
+ shared_flag='-shared'
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag="$shared_flag "'${wl}-G'
+ fi
+ else
+ # not using gcc
+ if test "$host_cpu" = ia64; then
+ # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release
+ # chokes on -Wl,-G. The following line is correct:
+ shared_flag='-G'
+ else
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag='${wl}-G'
+ else
+ shared_flag='${wl}-bM:SRE'
+ fi
+ fi
+ fi
+
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-bexpall'
+ # It seems that -bexpall does not export symbols beginning with
+ # underscore (_), so it is better to generate a list of symbols to export.
+ _LT_TAGVAR(always_export_symbols, $1)=yes
+ if test "$aix_use_runtimelinking" = yes; then
+ # Warning - without using the other runtime loading flags (-brtl),
+ # -berok will link without error, but may produce a broken library.
+ _LT_TAGVAR(allow_undefined_flag, $1)='-berok'
+ # Determine the default libpath from the value encoded in an
+ # empty executable.
+ _LT_SYS_MODULE_PATH_AIX
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath"
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
+ else
+ if test "$host_cpu" = ia64; then
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-R $libdir:/usr/lib:/lib'
+ _LT_TAGVAR(allow_undefined_flag, $1)="-z nodefs"
+ _LT_TAGVAR(archive_expsym_cmds, $1)="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols"
+ else
+ # Determine the default libpath from the value encoded in an
+ # empty executable.
+ _LT_SYS_MODULE_PATH_AIX
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath"
+ # Warning - without using the other run time loading flags,
+ # -berok will link without error, but may produce a broken library.
+ _LT_TAGVAR(no_undefined_flag, $1)=' ${wl}-bernotok'
+ _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-berok'
+ # Exported symbols can be pulled into shared objects from archives
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='$convenience'
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=yes
+ # This is similar to how AIX traditionally builds its shared libraries.
+ _LT_TAGVAR(archive_expsym_cmds, $1)="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname'
+ fi
+ fi
+ ;;
+
+ amigaos*)
+ case $host_cpu in
+ powerpc)
+ # see comment about AmigaOS4 .so support
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)=''
+ ;;
+ m68k)
+ _LT_TAGVAR(archive_cmds, $1)='$RM $output_objdir/a2ixlibrary.data~$ECHO "#define NAME $libname" > $output_objdir/a2ixlibrary.data~$ECHO "#define LIBRARY_ID 1" >> $output_objdir/a2ixlibrary.data~$ECHO "#define VERSION $major" >> $output_objdir/a2ixlibrary.data~$ECHO "#define REVISION $revision" >> $output_objdir/a2ixlibrary.data~$AR $AR_FLAGS $lib $libobjs~$RANLIB $lib~(cd $output_objdir && a2ixlibrary -32)'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ ;;
+ esac
+ ;;
+
+ bsdi[[45]]*)
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)=-rdynamic
+ ;;
+
+ cygwin* | mingw* | pw32* | cegcc*)
+ # When not using gcc, we currently assume that we are using
+ # Microsoft Visual C++.
+ # hardcode_libdir_flag_spec is actually meaningless, as there is
+ # no search path for DLLs.
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)=' '
+ _LT_TAGVAR(allow_undefined_flag, $1)=unsupported
+ # Tell ltmain to make .lib files, not .a files.
+ libext=lib
+ # Tell ltmain to make .dll files, not .so files.
+ shrext_cmds=".dll"
+ # FIXME: Setting linknames here is a bad hack.
+ _LT_TAGVAR(archive_cmds, $1)='$CC -o $lib $libobjs $compiler_flags `$ECHO "X$deplibs" | $Xsed -e '\''s/ -lc$//'\''` -link -dll~linknames='
+ # The linker will automatically build a .lib file if we build a DLL.
+ _LT_TAGVAR(old_archive_from_new_cmds, $1)='true'
+ # FIXME: Should let the user specify the lib program.
+ _LT_TAGVAR(old_archive_cmds, $1)='lib -OUT:$oldlib$oldobjs$old_deplibs'
+ _LT_TAGVAR(fix_srcfile_path, $1)='`cygpath -w "$srcfile"`'
+ _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=yes
+ ;;
+
+ darwin* | rhapsody*)
+ _LT_DARWIN_LINKER_FEATURES($1)
+ ;;
+
+ dgux*)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ freebsd1*)
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+
+ # FreeBSD 2.2.[012] allows us to include c++rt0.o to get C++ constructor
+ # support. Future versions do this automatically, but an explicit c++rt0.o
+ # does not break anything, and helps significantly (at the cost of a little
+ # extra space).
+ freebsd2.2*)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags /usr/lib/c++rt0.o'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ # Unfortunately, older versions of FreeBSD 2 do not have this feature.
+ freebsd2*)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ # FreeBSD 3 and greater uses gcc -shared to do shared libraries.
+ freebsd* | dragonfly*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ hpux9*)
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(archive_cmds, $1)='$RM $output_objdir/$soname~$CC -shared -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $libobjs $deplibs $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$RM $output_objdir/$soname~$LD -b +b $install_libdir -o $output_objdir/$soname $libobjs $deplibs $linker_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ fi
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+
+ # hardcode_minus_L: Not really in the search PATH,
+ # but as the default location of the library.
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ ;;
+
+ hpux10*)
+ if test "$GCC" = yes -a "$with_gnu_ld" = no; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$LD -b +h $soname +b $install_libdir -o $lib $libobjs $deplibs $linker_flags'
+ fi
+ if test "$with_gnu_ld" = no; then
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)='+b $libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ # hardcode_minus_L: Not really in the search PATH,
+ # but as the default location of the library.
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ fi
+ ;;
+
+ hpux11*)
+ if test "$GCC" = yes -a "$with_gnu_ld" = no; then
+ case $host_cpu in
+ hppa*64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ ia64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ else
+ case $host_cpu in
+ hppa*64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ ia64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ fi
+ if test "$with_gnu_ld" = no; then
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+
+ case $host_cpu in
+ hppa*64*|ia64*)
+ _LT_TAGVAR(hardcode_direct, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+ *)
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+
+ # hardcode_minus_L: Not really in the search PATH,
+ # but as the default location of the library.
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ ;;
+ esac
+ fi
+ ;;
+
+ irix5* | irix6* | nonstopux*)
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ # Try to use the -exported_symbol ld option, if it does not
+ # work, assume that -exports_file does not work either and
+ # implicitly export all symbols.
+ save_LDFLAGS="$LDFLAGS"
+ LDFLAGS="$LDFLAGS -shared ${wl}-exported_symbol ${wl}foo ${wl}-update_registry ${wl}/dev/null"
+ AC_LINK_IFELSE(int foo(void) {},
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations ${wl}-exports_file ${wl}$export_symbols -o $lib'
+ )
+ LDFLAGS="$save_LDFLAGS"
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -exports_file $export_symbols -o $lib'
+ fi
+ _LT_TAGVAR(archive_cmds_need_lc, $1)='no'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ _LT_TAGVAR(inherit_rpath, $1)=yes
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ ;;
+
+ netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags' # a.out
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$LD -shared -o $lib $libobjs $deplibs $linker_flags' # ELF
+ fi
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ newsos6)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ *nto* | *qnx*)
+ ;;
+
+ openbsd*)
+ if test -f /usr/libexec/ld.so; then
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
+ if test -z "`echo __ELF__ | $CC -E - | $GREP __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags ${wl}-retain-symbols-file,$export_symbols'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ else
+ case $host_os in
+ openbsd[[01]].* | openbsd2.[[0-7]] | openbsd2.[[0-7]].*)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ ;;
+ esac
+ fi
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+
+ os2*)
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ _LT_TAGVAR(allow_undefined_flag, $1)=unsupported
+ _LT_TAGVAR(archive_cmds, $1)='$ECHO "LIBRARY $libname INITINSTANCE" > $output_objdir/$libname.def~$ECHO "DESCRIPTION \"$libname\"" >> $output_objdir/$libname.def~$ECHO DATA >> $output_objdir/$libname.def~$ECHO " SINGLE NONSHARED" >> $output_objdir/$libname.def~$ECHO EXPORTS >> $output_objdir/$libname.def~emxexp $libobjs >> $output_objdir/$libname.def~$CC -Zdll -Zcrtdll -o $lib $libobjs $deplibs $compiler_flags $output_objdir/$libname.def'
+ _LT_TAGVAR(old_archive_from_new_cmds, $1)='emximp -o $output_objdir/$libname.a $output_objdir/$libname.def'
+ ;;
+
+ osf3*)
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ else
+ _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ fi
+ _LT_TAGVAR(archive_cmds_need_lc, $1)='no'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ ;;
+
+ osf4* | osf5*) # as osf3* with the addition of -msym flag
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ else
+ _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $libobjs $deplibs $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done; printf "%s\\n" "-hidden">> $lib.exp~
+ $CC -shared${allow_undefined_flag} ${wl}-input ${wl}$lib.exp $compiler_flags $libobjs $deplibs -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~$RM $lib.exp'
+
+ # Both c and cxx compiler support -rpath directly
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-rpath $libdir'
+ fi
+ _LT_TAGVAR(archive_cmds_need_lc, $1)='no'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ ;;
+
+ solaris*)
+ _LT_TAGVAR(no_undefined_flag, $1)=' -z defs'
+ if test "$GCC" = yes; then
+ wlarc='${wl}'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}-z ${wl}text ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -shared ${wl}-z ${wl}text ${wl}-M ${wl}$lib.exp ${wl}-h ${wl}$soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp'
+ else
+ case `$CC -V 2>&1` in
+ *"Compilers 5.0"*)
+ wlarc=''
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $LD -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $linker_flags~$RM $lib.exp'
+ ;;
+ *)
+ wlarc='${wl}'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G${allow_undefined_flag} -h $soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -G${allow_undefined_flag} -M $lib.exp -h $soname -o $lib $libobjs $deplibs $compiler_flags~$RM $lib.exp'
+ ;;
+ esac
+ fi
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ case $host_os in
+ solaris2.[[0-5]] | solaris2.[[0-5]].*) ;;
+ *)
+ # The compiler driver will combine and reorder linker options,
+ # but understands `-z linker_flag'. GCC discards it without `$wl',
+ # but is careful enough not to reorder.
+ # Supported since Solaris 2.6 (maybe 2.5.1?)
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}-z ${wl}allextract$convenience ${wl}-z ${wl}defaultextract'
+ else
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='-z allextract$convenience -z defaultextract'
+ fi
+ ;;
+ esac
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ ;;
+
+ sunos4*)
+ if test "x$host_vendor" = xsequent; then
+ # Use $CC to link under sequent, because it throws in some extra .o
+ # files that make .init and .fini sections work.
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G ${wl}-h $soname -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$LD -assert pure-text -Bstatic -o $lib $libobjs $deplibs $linker_flags'
+ fi
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ sysv4)
+ case $host_vendor in
+ sni)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_direct, $1)=yes # is this really true???
+ ;;
+ siemens)
+ ## LD is ld it makes a PLAMLIB
+ ## CC just makes a GrossModule.
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(reload_cmds, $1)='$CC -r -o $output$reload_objs'
+ _LT_TAGVAR(hardcode_direct, $1)=no
+ ;;
+ motorola)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_direct, $1)=no #Motorola manual says yes, but my tests say they lie
+ ;;
+ esac
+ runpath_var='LD_RUN_PATH'
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ sysv4.3*)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='-Bexport'
+ ;;
+
+ sysv4*MP*)
+ if test -d /usr/nec; then
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ runpath_var=LD_RUN_PATH
+ hardcode_runpath_var=yes
+ _LT_TAGVAR(ld_shlibs, $1)=yes
+ fi
+ ;;
+
+ sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[[01]].[[10]]* | unixware7* | sco3.2v5.0.[[024]]*)
+ _LT_TAGVAR(no_undefined_flag, $1)='${wl}-z,text'
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ runpath_var='LD_RUN_PATH'
+
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ fi
+ ;;
+
+ sysv5* | sco3.2v5* | sco5v6*)
+ # Note: We can NOT use -z defs as we might desire, because we do not
+ # link with -lc, and that would cause any symbols used from libc to
+ # always be unresolved, which means just about no library would
+ # ever link correctly. If we're not using GNU ld we use -z text
+ # though, which does catch some bad symbols but isn't as heavy-handed
+ # as -z defs.
+ _LT_TAGVAR(no_undefined_flag, $1)='${wl}-z,text'
+ _LT_TAGVAR(allow_undefined_flag, $1)='${wl}-z,nodefs'
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-R,$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=':'
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-Bexport'
+ runpath_var='LD_RUN_PATH'
+
+ if test "$GCC" = yes; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ fi
+ ;;
+
+ uts4*)
+ _LT_TAGVAR(archive_cmds, $1)='$LD -G -h $soname -o $lib $libobjs $deplibs $linker_flags'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+
+ *)
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ esac
+
+ if test x$host_vendor = xsni; then
+ case $host in
+ sysv4 | sysv4.2uw2* | sysv4.3* | sysv5*)
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-Blargedynsym'
+ ;;
+ esac
+ fi
+ fi
+])
+AC_MSG_RESULT([$_LT_TAGVAR(ld_shlibs, $1)])
+test "$_LT_TAGVAR(ld_shlibs, $1)" = no && can_build_shared=no
+
+_LT_TAGVAR(with_gnu_ld, $1)=$with_gnu_ld
+
+_LT_DECL([], [libext], [0], [Old archive suffix (normally "a")])dnl
+_LT_DECL([], [shrext_cmds], [1], [Shared library suffix (normally ".so")])dnl
+_LT_DECL([], [extract_expsyms_cmds], [2],
+ [The commands to extract the exported symbol list from a shared archive])
+
+#
+# Do we need to explicitly link libc?
+#
+case "x$_LT_TAGVAR(archive_cmds_need_lc, $1)" in
+x|xyes)
+ # Assume -lc should be added
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=yes
+
+ if test "$enable_shared" = yes && test "$GCC" = yes; then
+ case $_LT_TAGVAR(archive_cmds, $1) in
+ *'~'*)
+ # FIXME: we may have to deal with multi-command sequences.
+ ;;
+ '$CC '*)
+ # Test whether the compiler implicitly links with -lc since on some
+ # systems, -lgcc has to come before -lc. If gcc already passes -lc
+ # to ld, don't add -lc before -lgcc.
+ AC_MSG_CHECKING([whether -lc should be explicitly linked in])
+ $RM conftest*
+ echo "$lt_simple_compile_test_code" > conftest.$ac_ext
+
+ if AC_TRY_EVAL(ac_compile) 2>conftest.err; then
+ soname=conftest
+ lib=conftest
+ libobjs=conftest.$ac_objext
+ deplibs=
+ wl=$_LT_TAGVAR(lt_prog_compiler_wl, $1)
+ pic_flag=$_LT_TAGVAR(lt_prog_compiler_pic, $1)
+ compiler_flags=-v
+ linker_flags=-v
+ verstring=
+ output_objdir=.
+ libname=conftest
+ lt_save_allow_undefined_flag=$_LT_TAGVAR(allow_undefined_flag, $1)
+ _LT_TAGVAR(allow_undefined_flag, $1)=
+ if AC_TRY_EVAL(_LT_TAGVAR(archive_cmds, $1) 2\>\&1 \| $GREP \" -lc \" \>/dev/null 2\>\&1)
+ then
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ else
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=yes
+ fi
+ _LT_TAGVAR(allow_undefined_flag, $1)=$lt_save_allow_undefined_flag
+ else
+ cat conftest.err 1>&5
+ fi
+ $RM conftest*
+ AC_MSG_RESULT([$_LT_TAGVAR(archive_cmds_need_lc, $1)])
+ ;;
+ esac
+ fi
+ ;;
+esac
+
+_LT_TAGDECL([build_libtool_need_lc], [archive_cmds_need_lc], [0],
+ [Whether or not to add -lc for building shared libraries])
+_LT_TAGDECL([allow_libtool_libs_with_static_runtimes],
+ [enable_shared_with_static_runtimes], [0],
+ [Whether or not to disallow shared libs when runtime libs are static])
+_LT_TAGDECL([], [export_dynamic_flag_spec], [1],
+ [Compiler flag to allow reflexive dlopens])
+_LT_TAGDECL([], [whole_archive_flag_spec], [1],
+ [Compiler flag to generate shared objects directly from archives])
+_LT_TAGDECL([], [compiler_needs_object], [1],
+ [Whether the compiler copes with passing no objects directly])
+_LT_TAGDECL([], [old_archive_from_new_cmds], [2],
+ [Create an old-style archive from a shared archive])
+_LT_TAGDECL([], [old_archive_from_expsyms_cmds], [2],
+ [Create a temporary old-style archive to link instead of a shared archive])
+_LT_TAGDECL([], [archive_cmds], [2], [Commands used to build a shared archive])
+_LT_TAGDECL([], [archive_expsym_cmds], [2])
+_LT_TAGDECL([], [module_cmds], [2],
+ [Commands used to build a loadable module if different from building
+ a shared archive.])
+_LT_TAGDECL([], [module_expsym_cmds], [2])
+_LT_TAGDECL([], [with_gnu_ld], [1],
+ [Whether we are building with GNU ld or not])
+_LT_TAGDECL([], [allow_undefined_flag], [1],
+ [Flag that allows shared libraries with undefined symbols to be built])
+_LT_TAGDECL([], [no_undefined_flag], [1],
+ [Flag that enforces no undefined symbols])
+_LT_TAGDECL([], [hardcode_libdir_flag_spec], [1],
+ [Flag to hardcode $libdir into a binary during linking.
+ This must work even if $libdir does not exist])
+_LT_TAGDECL([], [hardcode_libdir_flag_spec_ld], [1],
+ [[If ld is used when linking, flag to hardcode $libdir into a binary
+ during linking. This must work even if $libdir does not exist]])
+_LT_TAGDECL([], [hardcode_libdir_separator], [1],
+ [Whether we need a single "-rpath" flag with a separated argument])
+_LT_TAGDECL([], [hardcode_direct], [0],
+ [Set to "yes" if using DIR/libNAME${shared_ext} during linking hardcodes
+ DIR into the resulting binary])
+_LT_TAGDECL([], [hardcode_direct_absolute], [0],
+ [Set to "yes" if using DIR/libNAME${shared_ext} during linking hardcodes
+ DIR into the resulting binary and the resulting library dependency is
+ "absolute", i.e impossible to change by setting ${shlibpath_var} if the
+ library is relocated])
+_LT_TAGDECL([], [hardcode_minus_L], [0],
+ [Set to "yes" if using the -LDIR flag during linking hardcodes DIR
+ into the resulting binary])
+_LT_TAGDECL([], [hardcode_shlibpath_var], [0],
+ [Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR
+ into the resulting binary])
+_LT_TAGDECL([], [hardcode_automatic], [0],
+ [Set to "yes" if building a shared library automatically hardcodes DIR
+ into the library and all subsequent libraries and executables linked
+ against it])
+_LT_TAGDECL([], [inherit_rpath], [0],
+ [Set to yes if linker adds runtime paths of dependent libraries
+ to runtime path list])
+_LT_TAGDECL([], [link_all_deplibs], [0],
+ [Whether libtool must link a program against all its dependency libraries])
+_LT_TAGDECL([], [fix_srcfile_path], [1],
+ [Fix the shell variable $srcfile for the compiler])
+_LT_TAGDECL([], [always_export_symbols], [0],
+ [Set to "yes" if exported symbols are required])
+_LT_TAGDECL([], [export_symbols_cmds], [2],
+ [The commands to list exported symbols])
+_LT_TAGDECL([], [exclude_expsyms], [1],
+ [Symbols that should not be listed in the preloaded symbols])
+_LT_TAGDECL([], [include_expsyms], [1],
+ [Symbols that must always be exported])
+_LT_TAGDECL([], [prelink_cmds], [2],
+ [Commands necessary for linking programs (against libraries) with templates])
+_LT_TAGDECL([], [file_list_spec], [1],
+ [Specify filename containing input files])
+dnl FIXME: Not yet implemented
+dnl _LT_TAGDECL([], [thread_safe_flag_spec], [1],
+dnl [Compiler flag to generate thread safe objects])
+])# _LT_LINKER_SHLIBS
+
+
+# _LT_LANG_C_CONFIG([TAG])
+# ------------------------
+# Ensure that the configuration variables for a C compiler are suitably
+# defined. These variables are subsequently used by _LT_CONFIG to write
+# the compiler configuration to `libtool'.
+m4_defun([_LT_LANG_C_CONFIG],
+[m4_require([_LT_DECL_EGREP])dnl
+lt_save_CC="$CC"
+AC_LANG_PUSH(C)
+
+# Source file extension for C test sources.
+ac_ext=c
+
+# Object file extension for compiled C test sources.
+objext=o
+_LT_TAGVAR(objext, $1)=$objext
+
+# Code to be used in simple compile tests
+lt_simple_compile_test_code="int some_variable = 0;"
+
+# Code to be used in simple link tests
+lt_simple_link_test_code='int main(){return(0);}'
+
+_LT_TAG_COMPILER
+# Save the default compiler, since it gets overwritten when the other
+# tags are being tested, and _LT_TAGVAR(compiler, []) is a NOP.
+compiler_DEFAULT=$CC
+
+# save warnings/boilerplate of simple test code
+_LT_COMPILER_BOILERPLATE
+_LT_LINKER_BOILERPLATE
+
+## CAVEAT EMPTOR:
+## There is no encapsulation within the following macros, do not change
+## the running order or otherwise move them around unless you know exactly
+## what you are doing...
+if test -n "$compiler"; then
+ _LT_COMPILER_NO_RTTI($1)
+ _LT_COMPILER_PIC($1)
+ _LT_COMPILER_C_O($1)
+ _LT_COMPILER_FILE_LOCKS($1)
+ _LT_LINKER_SHLIBS($1)
+ _LT_SYS_DYNAMIC_LINKER($1)
+ _LT_LINKER_HARDCODE_LIBPATH($1)
+ LT_SYS_DLOPEN_SELF
+ _LT_CMD_STRIPLIB
+
+ # Report which library types will actually be built
+ AC_MSG_CHECKING([if libtool supports shared libraries])
+ AC_MSG_RESULT([$can_build_shared])
+
+ AC_MSG_CHECKING([whether to build shared libraries])
+ test "$can_build_shared" = "no" && enable_shared=no
+
+ # On AIX, shared libraries and static libraries use the same namespace, and
+ # are all built from PIC.
+ case $host_os in
+ aix3*)
+ test "$enable_shared" = yes && enable_static=no
+ if test -n "$RANLIB"; then
+ archive_cmds="$archive_cmds~\$RANLIB \$lib"
+ postinstall_cmds='$RANLIB $lib'
+ fi
+ ;;
+
+ aix[[4-9]]*)
+ if test "$host_cpu" != ia64 && test "$aix_use_runtimelinking" = no ; then
+ test "$enable_shared" = yes && enable_static=no
+ fi
+ ;;
+ esac
+ AC_MSG_RESULT([$enable_shared])
+
+ AC_MSG_CHECKING([whether to build static libraries])
+ # Make sure either enable_shared or enable_static is yes.
+ test "$enable_shared" = yes || enable_static=yes
+ AC_MSG_RESULT([$enable_static])
+
+ _LT_CONFIG($1)
+fi
+AC_LANG_POP
+CC="$lt_save_CC"
+])# _LT_LANG_C_CONFIG
+
+
+# _LT_PROG_CXX
+# ------------
+# Since AC_PROG_CXX is broken, in that it returns g++ if there is no c++
+# compiler, we have our own version here.
+m4_defun([_LT_PROG_CXX],
+[
+pushdef([AC_MSG_ERROR], [_lt_caught_CXX_error=yes])
+AC_PROG_CXX
+if test -n "$CXX" && ( test "X$CXX" != "Xno" &&
+ ( (test "X$CXX" = "Xg++" && `g++ -v >/dev/null 2>&1` ) ||
+ (test "X$CXX" != "Xg++"))) ; then
+ AC_PROG_CXXCPP
+else
+ _lt_caught_CXX_error=yes
+fi
+popdef([AC_MSG_ERROR])
+])# _LT_PROG_CXX
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([_LT_PROG_CXX], [])
+
+
+# _LT_LANG_CXX_CONFIG([TAG])
+# --------------------------
+# Ensure that the configuration variables for a C++ compiler are suitably
+# defined. These variables are subsequently used by _LT_CONFIG to write
+# the compiler configuration to `libtool'.
+m4_defun([_LT_LANG_CXX_CONFIG],
+[AC_REQUIRE([_LT_PROG_CXX])dnl
+m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+m4_require([_LT_DECL_EGREP])dnl
+
+AC_LANG_PUSH(C++)
+_LT_TAGVAR(archive_cmds_need_lc, $1)=no
+_LT_TAGVAR(allow_undefined_flag, $1)=
+_LT_TAGVAR(always_export_symbols, $1)=no
+_LT_TAGVAR(archive_expsym_cmds, $1)=
+_LT_TAGVAR(compiler_needs_object, $1)=no
+_LT_TAGVAR(export_dynamic_flag_spec, $1)=
+_LT_TAGVAR(hardcode_direct, $1)=no
+_LT_TAGVAR(hardcode_direct_absolute, $1)=no
+_LT_TAGVAR(hardcode_libdir_flag_spec, $1)=
+_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)=
+_LT_TAGVAR(hardcode_libdir_separator, $1)=
+_LT_TAGVAR(hardcode_minus_L, $1)=no
+_LT_TAGVAR(hardcode_shlibpath_var, $1)=unsupported
+_LT_TAGVAR(hardcode_automatic, $1)=no
+_LT_TAGVAR(inherit_rpath, $1)=no
+_LT_TAGVAR(module_cmds, $1)=
+_LT_TAGVAR(module_expsym_cmds, $1)=
+_LT_TAGVAR(link_all_deplibs, $1)=unknown
+_LT_TAGVAR(old_archive_cmds, $1)=$old_archive_cmds
+_LT_TAGVAR(no_undefined_flag, $1)=
+_LT_TAGVAR(whole_archive_flag_spec, $1)=
+_LT_TAGVAR(enable_shared_with_static_runtimes, $1)=no
+
+# Source file extension for C++ test sources.
+ac_ext=cpp
+
+# Object file extension for compiled C++ test sources.
+objext=o
+_LT_TAGVAR(objext, $1)=$objext
+
+# No sense in running all these tests if we already determined that
+# the CXX compiler isn't working. Some variables (like enable_shared)
+# are currently assumed to apply to all compilers on this platform,
+# and will be corrupted by setting them based on a non-working compiler.
+if test "$_lt_caught_CXX_error" != yes; then
+ # Code to be used in simple compile tests
+ lt_simple_compile_test_code="int some_variable = 0;"
+
+ # Code to be used in simple link tests
+ lt_simple_link_test_code='int main(int, char *[[]]) { return(0); }'
+
+ # ltmain only uses $CC for tagged configurations so make sure $CC is set.
+ _LT_TAG_COMPILER
+
+ # save warnings/boilerplate of simple test code
+ _LT_COMPILER_BOILERPLATE
+ _LT_LINKER_BOILERPLATE
+
+ # Allow CC to be a program name with arguments.
+ lt_save_CC=$CC
+ lt_save_LD=$LD
+ lt_save_GCC=$GCC
+ GCC=$GXX
+ lt_save_with_gnu_ld=$with_gnu_ld
+ lt_save_path_LD=$lt_cv_path_LD
+ if test -n "${lt_cv_prog_gnu_ldcxx+set}"; then
+ lt_cv_prog_gnu_ld=$lt_cv_prog_gnu_ldcxx
+ else
+ $as_unset lt_cv_prog_gnu_ld
+ fi
+ if test -n "${lt_cv_path_LDCXX+set}"; then
+ lt_cv_path_LD=$lt_cv_path_LDCXX
+ else
+ $as_unset lt_cv_path_LD
+ fi
+ test -z "${LDCXX+set}" || LD=$LDCXX
+ CC=${CXX-"c++"}
+ compiler=$CC
+ _LT_TAGVAR(compiler, $1)=$CC
+ _LT_CC_BASENAME([$compiler])
+
+ if test -n "$compiler"; then
+ # We don't want -fno-exception when compiling C++ code, so set the
+ # no_builtin_flag separately
+ if test "$GXX" = yes; then
+ _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=' -fno-builtin'
+ else
+ _LT_TAGVAR(lt_prog_compiler_no_builtin_flag, $1)=
+ fi
+
+ if test "$GXX" = yes; then
+ # Set up default GNU C++ configuration
+
+ LT_PATH_LD
+
+ # Check if GNU C++ uses GNU ld as the underlying linker, since the
+ # archiving commands below assume that GNU ld is being used.
+ if test "$with_gnu_ld" = yes; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
+
+ # If archive_cmds runs LD, not CC, wlarc should be empty
+ # XXX I think wlarc can be eliminated in ltcf-cxx, but I need to
+ # investigate it a little bit more. (MM)
+ wlarc='${wl}'
+
+ # ancient GNU ld didn't support --whole-archive et. al.
+ if eval "`$CC -print-prog-name=ld` --help 2>&1" |
+ $GREP 'no-whole-archive' > /dev/null; then
+ _LT_TAGVAR(whole_archive_flag_spec, $1)="$wlarc"'--whole-archive$convenience '"$wlarc"'--no-whole-archive'
+ else
+ _LT_TAGVAR(whole_archive_flag_spec, $1)=
+ fi
+ else
+ with_gnu_ld=no
+ wlarc=
+
+ # A generic and very simple default shared library creation
+ # command for GNU C++ for the case where it uses the native
+ # linker, instead of GNU ld. If possible, this setting should
+ # overridden to take advantage of the native linker features on
+ # the platform it is being used on.
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $lib'
+ fi
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+
+ else
+ GXX=no
+ with_gnu_ld=no
+ wlarc=
+ fi
+
+ # PORTME: fill in a description of your system's C++ link characteristics
+ AC_MSG_CHECKING([whether the $compiler linker ($LD) supports shared libraries])
+ _LT_TAGVAR(ld_shlibs, $1)=yes
+ case $host_os in
+ aix3*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ aix[[4-9]]*)
+ if test "$host_cpu" = ia64; then
+ # On IA64, the linker does run time linking by default, so we don't
+ # have to do anything special.
+ aix_use_runtimelinking=no
+ exp_sym_flag='-Bexport'
+ no_entry_flag=""
+ else
+ aix_use_runtimelinking=no
+
+ # Test if we are trying to use run time linking or normal
+ # AIX style linking. If -brtl is somewhere in LDFLAGS, we
+ # need to do runtime linking.
+ case $host_os in aix4.[[23]]|aix4.[[23]].*|aix[[5-9]]*)
+ for ld_flag in $LDFLAGS; do
+ case $ld_flag in
+ *-brtl*)
+ aix_use_runtimelinking=yes
+ break
+ ;;
+ esac
+ done
+ ;;
+ esac
+
+ exp_sym_flag='-bexport'
+ no_entry_flag='-bnoentry'
+ fi
+
+ # When large executables or shared objects are built, AIX ld can
+ # have problems creating the table of contents. If linking a library
+ # or program results in "error TOC overflow" add -mminimal-toc to
+ # CXXFLAGS/CFLAGS for g++/gcc. In the cases where that is not
+ # enough to fix the problem, add -Wl,-bbigtoc to LDFLAGS.
+
+ _LT_TAGVAR(archive_cmds, $1)=''
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=':'
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ _LT_TAGVAR(file_list_spec, $1)='${wl}-f,'
+
+ if test "$GXX" = yes; then
+ case $host_os in aix4.[[012]]|aix4.[[012]].*)
+ # We only want to do this on AIX 4.2 and lower, the check
+ # below for broken collect2 doesn't work under 4.3+
+ collect2name=`${CC} -print-prog-name=collect2`
+ if test -f "$collect2name" &&
+ strings "$collect2name" | $GREP resolve_lib_name >/dev/null
+ then
+ # We have reworked collect2
+ :
+ else
+ # We have old collect2
+ _LT_TAGVAR(hardcode_direct, $1)=unsupported
+ # It fails to find uninstalled libraries when the uninstalled
+ # path is not listed in the libpath. Setting hardcode_minus_L
+ # to unsupported forces relinking
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=
+ fi
+ esac
+ shared_flag='-shared'
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag="$shared_flag "'${wl}-G'
+ fi
+ else
+ # not using gcc
+ if test "$host_cpu" = ia64; then
+ # VisualAge C++, Version 5.5 for AIX 5L for IA-64, Beta 3 Release
+ # chokes on -Wl,-G. The following line is correct:
+ shared_flag='-G'
+ else
+ if test "$aix_use_runtimelinking" = yes; then
+ shared_flag='${wl}-G'
+ else
+ shared_flag='${wl}-bM:SRE'
+ fi
+ fi
+ fi
+
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-bexpall'
+ # It seems that -bexpall does not export symbols beginning with
+ # underscore (_), so it is better to generate a list of symbols to
+ # export.
+ _LT_TAGVAR(always_export_symbols, $1)=yes
+ if test "$aix_use_runtimelinking" = yes; then
+ # Warning - without using the other runtime loading flags (-brtl),
+ # -berok will link without error, but may produce a broken library.
+ _LT_TAGVAR(allow_undefined_flag, $1)='-berok'
+ # Determine the default libpath from the value encoded in an empty
+ # executable.
+ _LT_SYS_MODULE_PATH_AIX
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath"
+
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags `if test "x${allow_undefined_flag}" != "x"; then $ECHO "X${wl}${allow_undefined_flag}" | $Xsed; else :; fi` '"\${wl}$exp_sym_flag:\$export_symbols $shared_flag"
+ else
+ if test "$host_cpu" = ia64; then
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-R $libdir:/usr/lib:/lib'
+ _LT_TAGVAR(allow_undefined_flag, $1)="-z nodefs"
+ _LT_TAGVAR(archive_expsym_cmds, $1)="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs '"\${wl}$no_entry_flag"' $compiler_flags ${wl}${allow_undefined_flag} '"\${wl}$exp_sym_flag:\$export_symbols"
+ else
+ # Determine the default libpath from the value encoded in an
+ # empty executable.
+ _LT_SYS_MODULE_PATH_AIX
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-blibpath:$libdir:'"$aix_libpath"
+ # Warning - without using the other run time loading flags,
+ # -berok will link without error, but may produce a broken library.
+ _LT_TAGVAR(no_undefined_flag, $1)=' ${wl}-bernotok'
+ _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-berok'
+ # Exported symbols can be pulled into shared objects from archives
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='$convenience'
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=yes
+ # This is similar to how AIX traditionally builds its shared
+ # libraries.
+ _LT_TAGVAR(archive_expsym_cmds, $1)="\$CC $shared_flag"' -o $output_objdir/$soname $libobjs $deplibs ${wl}-bnoentry $compiler_flags ${wl}-bE:$export_symbols${allow_undefined_flag}~$AR $AR_FLAGS $output_objdir/$libname$release.a $output_objdir/$soname'
+ fi
+ fi
+ ;;
+
+ beos*)
+ if $LD --help 2>&1 | $GREP ': supported targets:.* elf' > /dev/null; then
+ _LT_TAGVAR(allow_undefined_flag, $1)=unsupported
+ # Joseph Beckenbach <jrb3 at best.com> says some releases of gcc
+ # support --undefined. This deserves some investigation. FIXME
+ _LT_TAGVAR(archive_cmds, $1)='$CC -nostart $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+
+ chorus*)
+ case $cc_basename in
+ *)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ esac
+ ;;
+
+ cygwin* | mingw* | pw32* | cegcc*)
+ # _LT_TAGVAR(hardcode_libdir_flag_spec, $1) is actually meaningless,
+ # as there is no search path for DLLs.
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-L$libdir'
+ _LT_TAGVAR(allow_undefined_flag, $1)=unsupported
+ _LT_TAGVAR(always_export_symbols, $1)=no
+ _LT_TAGVAR(enable_shared_with_static_runtimes, $1)=yes
+
+ if $LD --help 2>&1 | $GREP 'auto-import' > /dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ # If the export-symbols file already is a .def file (1st line
+ # is EXPORTS), use it as is; otherwise, prepend...
+ _LT_TAGVAR(archive_expsym_cmds, $1)='if test "x`$SED 1q $export_symbols`" = xEXPORTS; then
+ cp $export_symbols $output_objdir/$soname.def;
+ else
+ echo EXPORTS > $output_objdir/$soname.def;
+ cat $export_symbols >> $output_objdir/$soname.def;
+ fi~
+ $CC -shared -nostdlib $output_objdir/$soname.def $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $output_objdir/$soname ${wl}--enable-auto-image-base -Xlinker --out-implib -Xlinker $lib'
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+ darwin* | rhapsody*)
+ _LT_DARWIN_LINKER_FEATURES($1)
+ ;;
+
+ dgux*)
+ case $cc_basename in
+ ec++*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ ghcx*)
+ # Green Hills C++ Compiler
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ esac
+ ;;
+
+ freebsd[[12]]*)
+ # C++ shared libraries reported to be fairly broken before
+ # switch to ELF
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+
+ freebsd-elf*)
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ ;;
+
+ freebsd* | dragonfly*)
+ # FreeBSD 3 and later use GNU C++ and GNU ld with standard ELF
+ # conventions
+ _LT_TAGVAR(ld_shlibs, $1)=yes
+ ;;
+
+ gnu*)
+ ;;
+
+ hpux9*)
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes # Not in the search PATH,
+ # but as the default
+ # location of the library.
+
+ case $cc_basename in
+ CC*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ aCC*)
+ _LT_TAGVAR(archive_cmds, $1)='$RM $output_objdir/$soname~$CC -b ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $EGREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ *)
+ if test "$GXX" = yes; then
+ _LT_TAGVAR(archive_cmds, $1)='$RM $output_objdir/$soname~$CC -shared -nostdlib -fPIC ${wl}+b ${wl}$install_libdir -o $output_objdir/$soname $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~test $output_objdir/$soname = $lib || mv $output_objdir/$soname $lib'
+ else
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+ esac
+ ;;
+
+ hpux10*|hpux11*)
+ if test $with_gnu_ld = no; then
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}+b ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+
+ case $host_cpu in
+ hppa*64*|ia64*)
+ ;;
+ *)
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ ;;
+ esac
+ fi
+ case $host_cpu in
+ hppa*64*|ia64*)
+ _LT_TAGVAR(hardcode_direct, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ ;;
+ *)
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
+ _LT_TAGVAR(hardcode_minus_L, $1)=yes # Not in the search PATH,
+ # but as the default
+ # location of the library.
+ ;;
+ esac
+
+ case $cc_basename in
+ CC*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ aCC*)
+ case $host_cpu in
+ hppa*64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ ia64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -b ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ esac
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`($CC -b $CFLAGS -v conftest.$objext 2>&1) | $GREP "\-L"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ *)
+ if test "$GXX" = yes; then
+ if test $with_gnu_ld = no; then
+ case $host_cpu in
+ hppa*64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib -fPIC ${wl}+h ${wl}$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ ia64*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib -fPIC ${wl}+h ${wl}$soname ${wl}+nodefaultrpath -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib -fPIC ${wl}+h ${wl}$soname ${wl}+b ${wl}$install_libdir -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ ;;
+ esac
+ fi
+ else
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+ esac
+ ;;
+
+ interix[[3-9]]*)
+ _LT_TAGVAR(hardcode_direct, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ # Hack: On Interix 3.x, we cannot compile PIC because of a broken gcc.
+ # Instead, shared libraries are loaded at an image base (0x10000000 by
+ # default) and relocated if they conflict, which is a slow very memory
+ # consuming and fragmenting process. To avoid this, we pick a random,
+ # 256 KiB-aligned image base between 0x50000000 and 0x6FFC0000 at link
+ # time. Moving up from 0x10000000 also allows more sbrk(2) space.
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='sed "s,^,_," $export_symbols >$output_objdir/$soname.expsym~$CC -shared $pic_flag $libobjs $deplibs $compiler_flags ${wl}-h,$soname ${wl}--retain-symbols-file,$output_objdir/$soname.expsym ${wl}--image-base,`expr ${RANDOM-$$} % 4096 / 2 \* 262144 + 1342177280` -o $lib'
+ ;;
+ irix5* | irix6*)
+ case $cc_basename in
+ CC*)
+ # SGI C++
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -all -multigot $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+
+ # Archives containing C++ object files must be created using
+ # "CC -ar", where "CC" is the IRIX C++ compiler. This is
+ # necessary to make sure instantiated templates are included
+ # in the archive.
+ _LT_TAGVAR(old_archive_cmds, $1)='$CC -ar -WR,-u -o $oldlib $oldobjs'
+ ;;
+ *)
+ if test "$GXX" = yes; then
+ if test "$with_gnu_ld" = no; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ else
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` -o $lib'
+ fi
+ fi
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ ;;
+ esac
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+ _LT_TAGVAR(inherit_rpath, $1)=yes
+ ;;
+
+ linux* | k*bsd*-gnu)
+ case $cc_basename in
+ KCC*)
+ # Kuck and Associates, Inc. (KAI) C++ Compiler
+
+ # KCC will only create a shared library if the output file
+ # ends with ".so" (or ".sl" for HP-UX), so rename the library
+ # to its proper name (with version) after linking.
+ _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo $lib | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib ${wl}-retain-symbols-file,$export_symbols; mv \$templib $lib'
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`$CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1 | $GREP "ld"`; rm -f libconftest$shared_ext; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
+
+ # Archives containing C++ object files must be created using
+ # "CC -Bstatic", where "CC" is the KAI C++ compiler.
+ _LT_TAGVAR(old_archive_cmds, $1)='$CC -Bstatic -o $oldlib $oldobjs'
+ ;;
+ icpc* | ecpc* )
+ # Intel C++
+ with_gnu_ld=yes
+ # version 8.0 and above of icpc choke on multiply defined symbols
+ # if we add $predep_objects and $postdep_objects, however 7.1 and
+ # earlier do not add the objects themselves.
+ case `$CC -V 2>&1` in
+ *"Version 7."*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ ;;
+ *) # Version 8.0 or newer
+ tmp_idyn=
+ case $host_cpu in
+ ia64*) tmp_idyn=' -i_dynamic';;
+ esac
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared'"$tmp_idyn"' $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-retain-symbols-file $wl$export_symbols -o $lib'
+ ;;
+ esac
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive$convenience ${wl}--no-whole-archive'
+ ;;
+ pgCC* | pgcpp*)
+ # Portland Group C++ compiler
+ case `$CC -V` in
+ *pgCC\ [[1-5]]* | *pgcpp\ [[1-5]]*)
+ _LT_TAGVAR(prelink_cmds, $1)='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $objs $libobjs $compile_deplibs~
+ compile_command="$compile_command `find $tpldir -name \*.o | $NL2SP`"'
+ _LT_TAGVAR(old_archive_cmds, $1)='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $oldobjs$old_deplibs~
+ $AR $AR_FLAGS $oldlib$oldobjs$old_deplibs `find $tpldir -name \*.o | $NL2SP`~
+ $RANLIB $oldlib'
+ _LT_TAGVAR(archive_cmds, $1)='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
+ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='tpldir=Template.dir~
+ rm -rf $tpldir~
+ $CC --prelink_objects --instantiation_dir $tpldir $predep_objects $libobjs $deplibs $convenience $postdep_objects~
+ $CC -shared $pic_flag $predep_objects $libobjs $deplibs `find $tpldir -name \*.o | $NL2SP` $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
+ ;;
+ *) # Version 6 will use weak symbols
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname ${wl}-retain-symbols-file ${wl}$export_symbols -o $lib'
+ ;;
+ esac
+
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}--rpath ${wl}$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`for conv in $convenience\"\"; do test -n \"$conv\" && new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ ;;
+ cxx*)
+ # Compaq C++
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $wl$soname -o $lib ${wl}-retain-symbols-file $wl$export_symbols'
+
+ runpath_var=LD_RUN_PATH
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-rpath $libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld .*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ xl*)
+ # IBM XL 8.0 on PPC, with GNU ld
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}--export-dynamic'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname -o $lib'
+ if test "x$supports_anon_versioning" = xyes; then
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $output_objdir/$libname.ver~
+ cat $export_symbols | sed -e "s/\(.*\)/\1;/" >> $output_objdir/$libname.ver~
+ echo "local: *; };" >> $output_objdir/$libname.ver~
+ $CC -qmkshrobj $libobjs $deplibs $compiler_flags ${wl}-soname $wl$soname ${wl}-version-script ${wl}$output_objdir/$libname.ver -o $lib'
+ fi
+ ;;
+ *)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C++ 5.9
+ _LT_TAGVAR(no_undefined_flag, $1)=' -zdefs'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file ${wl}$export_symbols'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}--whole-archive`new_convenience=; for conv in $convenience\"\"; do test -z \"$conv\" || new_convenience=\"$new_convenience,$conv\"; done; $ECHO \"$new_convenience\"` ${wl}--no-whole-archive'
+ _LT_TAGVAR(compiler_needs_object, $1)=yes
+
+ # Not sure whether something based on
+ # $CC $CFLAGS -v conftest.$objext -o libconftest$shared_ext 2>&1
+ # would be better.
+ output_verbose_link_cmd='echo'
+
+ # Archives containing C++ object files must be created using
+ # "CC -xar", where "CC" is the Sun C++ compiler. This is
+ # necessary to make sure instantiated templates are included
+ # in the archive.
+ _LT_TAGVAR(old_archive_cmds, $1)='$CC -xar -o $oldlib $oldobjs'
+ ;;
+ esac
+ ;;
+ esac
+ ;;
+
+ lynxos*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+
+ m88k*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+
+ mvs*)
+ case $cc_basename in
+ cxx*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ esac
+ ;;
+
+ netbsd*)
+ if echo __ELF__ | $CC -E - | $GREP __ELF__ >/dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$LD -Bshareable -o $lib $predep_objects $libobjs $deplibs $postdep_objects $linker_flags'
+ wlarc=
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ fi
+ # Workaround some broken pre-1.5 toolchains
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP conftest.$objext | $SED -e "s:-lgcc -lc -lgcc::"'
+ ;;
+
+ *nto* | *qnx*)
+ _LT_TAGVAR(ld_shlibs, $1)=yes
+ ;;
+
+ openbsd2*)
+ # C++ shared libraries are fairly broken
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+
+ openbsd*)
+ if test -f /usr/libexec/ld.so; then
+ _LT_TAGVAR(hardcode_direct, $1)=yes
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ _LT_TAGVAR(hardcode_direct_absolute, $1)=yes
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -o $lib'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ if test -z "`echo __ELF__ | $CC -E - | grep __ELF__`" || test "$host_os-$host_cpu" = "openbsd2.8-powerpc"; then
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared $pic_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-retain-symbols-file,$export_symbols -o $lib'
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-E'
+ _LT_TAGVAR(whole_archive_flag_spec, $1)="$wlarc"'--whole-archive$convenience '"$wlarc"'--no-whole-archive'
+ fi
+ output_verbose_link_cmd=echo
+ else
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+
+ osf3* | osf4* | osf5*)
+ case $cc_basename in
+ KCC*)
+ # Kuck and Associates, Inc. (KAI) C++ Compiler
+
+ # KCC will only create a shared library if the output file
+ # ends with ".so" (or ".sl" for HP-UX), so rename the library
+ # to its proper name (with version) after linking.
+ _LT_TAGVAR(archive_cmds, $1)='tempext=`echo $shared_ext | $SED -e '\''s/\([[^()0-9A-Za-z{}]]\)/\\\\\1/g'\''`; templib=`echo "$lib" | $SED -e "s/\${tempext}\..*/.so/"`; $CC $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags --soname $soname -o \$templib; mv \$templib $lib'
+
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath,$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+
+ # Archives containing C++ object files must be created using
+ # the KAI C++ compiler.
+ case $host in
+ osf3*) _LT_TAGVAR(old_archive_cmds, $1)='$CC -Bstatic -o $oldlib $oldobjs' ;;
+ *) _LT_TAGVAR(old_archive_cmds, $1)='$CC -o $oldlib $oldobjs' ;;
+ esac
+ ;;
+ RCC*)
+ # Rational C++ 2.4.1
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ cxx*)
+ case $host in
+ osf3*)
+ _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname $soname `test -n "$verstring" && $ECHO "X${wl}-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ ;;
+ *)
+ _LT_TAGVAR(allow_undefined_flag, $1)=' -expect_unresolved \*'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='for i in `cat $export_symbols`; do printf "%s %s\\n" -exported_symbol "\$i" >> $lib.exp; done~
+ echo "-hidden">> $lib.exp~
+ $CC -shared$allow_undefined_flag $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags -msym -soname $soname ${wl}-input ${wl}$lib.exp `test -n "$verstring" && $ECHO "X-set_version $verstring" | $Xsed` -update_registry ${output_objdir}/so_locations -o $lib~
+ $RM $lib.exp'
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-rpath $libdir'
+ ;;
+ esac
+
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ #
+ # There doesn't appear to be a way to prevent this compiler from
+ # explicitly linking system object files so we need to strip them
+ # from the output so that they don't get included in the library
+ # dependencies.
+ output_verbose_link_cmd='templist=`$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "ld" | $GREP -v "ld:"`; templist=`$ECHO "X$templist" | $Xsed -e "s/\(^.*ld.*\)\( .*ld.*$\)/\1/"`; list=""; for z in $templist; do case $z in conftest.$objext) list="$list $z";; *.$objext);; *) list="$list $z";;esac; done; $ECHO "X$list" | $Xsed'
+ ;;
+ *)
+ if test "$GXX" = yes && test "$with_gnu_ld" = no; then
+ _LT_TAGVAR(allow_undefined_flag, $1)=' ${wl}-expect_unresolved ${wl}\*'
+ case $host in
+ osf3*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "X${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib ${allow_undefined_flag} $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-msym ${wl}-soname ${wl}$soname `test -n "$verstring" && $ECHO "${wl}-set_version ${wl}$verstring" | $Xsed` ${wl}-update_registry ${wl}${output_objdir}/so_locations -o $lib'
+ ;;
+ esac
+
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-rpath ${wl}$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=:
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+
+ else
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ fi
+ ;;
+ esac
+ ;;
+
+ psos*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+
+ sunos4*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.x
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ lcc*)
+ # Lucid
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ esac
+ ;;
+
+ solaris*)
+ case $cc_basename in
+ CC*)
+ # Sun C++ 4.2, 5.x and Centerline C++
+ _LT_TAGVAR(archive_cmds_need_lc,$1)=yes
+ _LT_TAGVAR(no_undefined_flag, $1)=' -zdefs'
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G${allow_undefined_flag} -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -G${allow_undefined_flag} ${wl}-M ${wl}$lib.exp -h$soname -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~$RM $lib.exp'
+
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='-R$libdir'
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ case $host_os in
+ solaris2.[[0-5]] | solaris2.[[0-5]].*) ;;
+ *)
+ # The compiler driver will combine and reorder linker options,
+ # but understands `-z linker_flag'.
+ # Supported since Solaris 2.6 (maybe 2.5.1?)
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='-z allextract$convenience -z defaultextract'
+ ;;
+ esac
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+
+ output_verbose_link_cmd='echo'
+
+ # Archives containing C++ object files must be created using
+ # "CC -xar", where "CC" is the Sun C++ compiler. This is
+ # necessary to make sure instantiated templates are included
+ # in the archive.
+ _LT_TAGVAR(old_archive_cmds, $1)='$CC -xar -o $oldlib $oldobjs'
+ ;;
+ gcx*)
+ # Green Hills C++ Compiler
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-h $wl$soname -o $lib'
+
+ # The C++ compiler must be used to create the archive.
+ _LT_TAGVAR(old_archive_cmds, $1)='$CC $LDFLAGS -archive -o $oldlib $oldobjs'
+ ;;
+ *)
+ # GNU C++ compiler with Solaris linker
+ if test "$GXX" = yes && test "$with_gnu_ld" = no; then
+ _LT_TAGVAR(no_undefined_flag, $1)=' ${wl}-z ${wl}defs'
+ if $CC --version | $GREP -v '^2\.7' > /dev/null; then
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared -nostdlib $LDFLAGS $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-h $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -shared -nostdlib ${wl}-M $wl$lib.exp -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~$RM $lib.exp'
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -shared $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+ else
+ # g++ 2.7 appears to require `-G' NOT `-shared' on this
+ # platform.
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G -nostdlib $LDFLAGS $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags ${wl}-h $wl$soname -o $lib'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='echo "{ global:" > $lib.exp~cat $export_symbols | $SED -e "s/\(.*\)/\1;/" >> $lib.exp~echo "local: *; };" >> $lib.exp~
+ $CC -G -nostdlib ${wl}-M $wl$lib.exp -o $lib $predep_objects $libobjs $deplibs $postdep_objects $compiler_flags~$RM $lib.exp'
+
+ # Commands to make compiler produce verbose output that lists
+ # what "hidden" libraries, object files and flags are used when
+ # linking a shared library.
+ output_verbose_link_cmd='$CC -G $CFLAGS -v conftest.$objext 2>&1 | $GREP "\-L"'
+ fi
+
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-R $wl$libdir'
+ case $host_os in
+ solaris2.[[0-5]] | solaris2.[[0-5]].*) ;;
+ *)
+ _LT_TAGVAR(whole_archive_flag_spec, $1)='${wl}-z ${wl}allextract$convenience ${wl}-z ${wl}defaultextract'
+ ;;
+ esac
+ fi
+ ;;
+ esac
+ ;;
+
+ sysv4*uw2* | sysv5OpenUNIX* | sysv5UnixWare7.[[01]].[[10]]* | unixware7* | sco3.2v5.0.[[024]]*)
+ _LT_TAGVAR(no_undefined_flag, $1)='${wl}-z,text'
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ runpath_var='LD_RUN_PATH'
+
+ case $cc_basename in
+ CC*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ ;;
+
+ sysv5* | sco3.2v5* | sco5v6*)
+ # Note: We can NOT use -z defs as we might desire, because we do not
+ # link with -lc, and that would cause any symbols used from libc to
+ # always be unresolved, which means just about no library would
+ # ever link correctly. If we're not using GNU ld we use -z text
+ # though, which does catch some bad symbols but isn't as heavy-handed
+ # as -z defs.
+ _LT_TAGVAR(no_undefined_flag, $1)='${wl}-z,text'
+ _LT_TAGVAR(allow_undefined_flag, $1)='${wl}-z,nodefs'
+ _LT_TAGVAR(archive_cmds_need_lc, $1)=no
+ _LT_TAGVAR(hardcode_shlibpath_var, $1)=no
+ _LT_TAGVAR(hardcode_libdir_flag_spec, $1)='${wl}-R,$libdir'
+ _LT_TAGVAR(hardcode_libdir_separator, $1)=':'
+ _LT_TAGVAR(link_all_deplibs, $1)=yes
+ _LT_TAGVAR(export_dynamic_flag_spec, $1)='${wl}-Bexport'
+ runpath_var='LD_RUN_PATH'
+
+ case $cc_basename in
+ CC*)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -G ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -G ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ *)
+ _LT_TAGVAR(archive_cmds, $1)='$CC -shared ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ _LT_TAGVAR(archive_expsym_cmds, $1)='$CC -shared ${wl}-Bexport:$export_symbols ${wl}-h,$soname -o $lib $libobjs $deplibs $compiler_flags'
+ ;;
+ esac
+ ;;
+
+ tandem*)
+ case $cc_basename in
+ NCC*)
+ # NonStop-UX NCC 3.20
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ *)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ esac
+ ;;
+
+ vxworks*)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+
+ *)
+ # FIXME: insert proper C++ library support
+ _LT_TAGVAR(ld_shlibs, $1)=no
+ ;;
+ esac
+
+ AC_MSG_RESULT([$_LT_TAGVAR(ld_shlibs, $1)])
+ test "$_LT_TAGVAR(ld_shlibs, $1)" = no && can_build_shared=no
+
+ _LT_TAGVAR(GCC, $1)="$GXX"
+ _LT_TAGVAR(LD, $1)="$LD"
+
+ ## CAVEAT EMPTOR:
+ ## There is no encapsulation within the following macros, do not change
+ ## the running order or otherwise move them around unless you know exactly
+ ## what you are doing...
+ _LT_SYS_HIDDEN_LIBDEPS($1)
+ _LT_COMPILER_PIC($1)
+ _LT_COMPILER_C_O($1)
+ _LT_COMPILER_FILE_LOCKS($1)
+ _LT_LINKER_SHLIBS($1)
+ _LT_SYS_DYNAMIC_LINKER($1)
+ _LT_LINKER_HARDCODE_LIBPATH($1)
+
+ _LT_CONFIG($1)
+ fi # test -n "$compiler"
+
+ CC=$lt_save_CC
+ LDCXX=$LD
+ LD=$lt_save_LD
+ GCC=$lt_save_GCC
+ with_gnu_ld=$lt_save_with_gnu_ld
+ lt_cv_path_LDCXX=$lt_cv_path_LD
+ lt_cv_path_LD=$lt_save_path_LD
+ lt_cv_prog_gnu_ldcxx=$lt_cv_prog_gnu_ld
+ lt_cv_prog_gnu_ld=$lt_save_with_gnu_ld
+fi # test "$_lt_caught_CXX_error" != yes
+
+AC_LANG_POP
+])# _LT_LANG_CXX_CONFIG
+
+
+# _LT_SYS_HIDDEN_LIBDEPS([TAGNAME])
+# ---------------------------------
+# Figure out "hidden" library dependencies from verbose
+# compiler output when linking a shared library.
+# Parse the compiler output and extract the necessary
+# objects, libraries and library flags.
+m4_defun([_LT_SYS_HIDDEN_LIBDEPS],
+[m4_require([_LT_FILEUTILS_DEFAULTS])dnl
+# Dependencies to place before and after the object being linked:
+_LT_TAGVAR(predep_objects, $1)=
+_LT_TAGVAR(postdep_objects, $1)=
+_LT_TAGVAR(predeps, $1)=
+_LT_TAGVAR(postdeps, $1)=
+_LT_TAGVAR(compiler_lib_search_path, $1)=
+
+dnl we can't use the lt_simple_compile_test_code here,
+dnl because it contains code intended for an executable,
+dnl not a library. It's possible we should let each
+dnl tag define a new lt_????_link_test_code variable,
+dnl but it's only used here...
+m4_if([$1], [], [cat > conftest.$ac_ext <<_LT_EOF
+int a;
+void foo (void) { a = 0; }
+_LT_EOF
+], [$1], [CXX], [cat > conftest.$ac_ext <<_LT_EOF
+class Foo
+{
+public:
+ Foo (void) { a = 0; }
+private:
+ int a;
+};
+_LT_EOF
+], [$1], [F77], [cat > conftest.$ac_ext <<_LT_EOF
+ subroutine foo
+ implicit none
+ integer*4 a
+ a=0
+ return
+ end
+_LT_EOF
+], [$1], [FC], [cat > conftest.$ac_ext <<_LT_EOF
+ subroutine foo
+ implicit none
+ integer a
+ a=0
+ return
+ end
+_LT_EOF
+], [$1], [GCJ], [cat > conftest.$ac_ext <<_LT_EOF
+public class foo {
+ private int a;
+ public void bar (void) {
+ a = 0;
+ }
+};
+_LT_EOF
+])
+dnl Parse the compiler output and extract the necessary
+dnl objects, libraries and library flags.
+if AC_TRY_EVAL(ac_compile); then
+ # Parse the compiler output and extract the necessary
+ # objects, libraries and library flags.
+
+ # Sentinel used to keep track of whether or not we are before
+ # the conftest object file.
+ pre_test_object_deps_done=no
+
+ for p in `eval "$output_verbose_link_cmd"`; do
+ case $p in
+
+ -L* | -R* | -l*)
+ # Some compilers place space between "-{L,R}" and the path.
+ # Remove the space.
+ if test $p = "-L" ||
+ test $p = "-R"; then
+ prev=$p
+ continue
+ else
+ prev=
+ fi
+
+ if test "$pre_test_object_deps_done" = no; then
+ case $p in
+ -L* | -R*)
+ # Internal compiler library paths should come after those
+ # provided the user. The postdeps already come after the
+ # user supplied libs so there is no need to process them.
+ if test -z "$_LT_TAGVAR(compiler_lib_search_path, $1)"; then
+ _LT_TAGVAR(compiler_lib_search_path, $1)="${prev}${p}"
+ else
+ _LT_TAGVAR(compiler_lib_search_path, $1)="${_LT_TAGVAR(compiler_lib_search_path, $1)} ${prev}${p}"
+ fi
+ ;;
+ # The "-l" case would never come before the object being
+ # linked, so don't bother handling this case.
+ esac
+ else
+ if test -z "$_LT_TAGVAR(postdeps, $1)"; then
+ _LT_TAGVAR(postdeps, $1)="${prev}${p}"
+ else
+ _LT_TAGVAR(postdeps, $1)="${_LT_TAGVAR(postdeps, $1)} ${prev}${p}"
+ fi
+ fi
+ ;;
+
+ *.$objext)
+ # This assumes that the test object file only shows up
+ # once in the compiler output.
+ if test "$p" = "conftest.$objext"; then
+ pre_test_object_deps_done=yes
+ continue
+ fi
+
+ if test "$pre_test_object_deps_done" = no; then
+ if test -z "$_LT_TAGVAR(predep_objects, $1)"; then
+ _LT_TAGVAR(predep_objects, $1)="$p"
+ else
+ _LT_TAGVAR(predep_objects, $1)="$_LT_TAGVAR(predep_objects, $1) $p"
+ fi
+ else
+ if test -z "$_LT_TAGVAR(postdep_objects, $1)"; then
+ _LT_TAGVAR(postdep_objects, $1)="$p"
+ else
+ _LT_TAGVAR(postdep_objects, $1)="$_LT_TAGVAR(postdep_objects, $1) $p"
+ fi
+ fi
+ ;;
+
+ *) ;; # Ignore the rest.
+
+ esac
+ done
+
+ # Clean up.
+ rm -f a.out a.exe
+else
+ echo "libtool.m4: error: problem compiling $1 test program"
+fi
+
+$RM -f confest.$objext
+
+# PORTME: override above test on systems where it is broken
+m4_if([$1], [CXX],
+[case $host_os in
+interix[[3-9]]*)
+ # Interix 3.5 installs completely hosed .la files for C++, so rather than
+ # hack all around it, let's just trust "g++" to DTRT.
+ _LT_TAGVAR(predep_objects,$1)=
+ _LT_TAGVAR(postdep_objects,$1)=
+ _LT_TAGVAR(postdeps,$1)=
+ ;;
+
+linux*)
+ case `$CC -V 2>&1 | sed 5q` in
+ *Sun\ C*)
+ # Sun C++ 5.9
+
+ # The more standards-conforming stlport4 library is
+ # incompatible with the Cstd library. Avoid specifying
+ # it if it's in CXXFLAGS. Ignore libCrun as
+ # -library=stlport4 depends on it.
+ case " $CXX $CXXFLAGS " in
+ *" -library=stlport4 "*)
+ solaris_use_stlport4=yes
+ ;;
+ esac
+
+ if test "$solaris_use_stlport4" != yes; then
+ _LT_TAGVAR(postdeps,$1)='-library=Cstd -library=Crun'
+ fi
+ ;;
+ esac
+ ;;
+
+solaris*)
+ case $cc_basename in
+ CC*)
+ # The more standards-conforming stlport4 library is
+ # incompatible with the Cstd library. Avoid specifying
+ # it if it's in CXXFLAGS. Ignore libCrun as
+ # -library=stlport4 depends on it.
+ case " $CXX $CXXFLAGS " in
+ *" -library=stlport4 "*)
+ solaris_use_stlport4=yes
+ ;;
+ esac
+
+ # Adding this requires a known-good setup of shared libraries for
+ # Sun compiler versions before 5.6, else PIC objects from an old
+ # archive will be linked into the output, leading to subtle bugs.
+ if test "$solaris_use_stlport4" != yes; then
+ _LT_TAGVAR(postdeps,$1)='-library=Cstd -library=Crun'
+ fi
+ ;;
+ esac
+ ;;
+esac
+])
+
+case " $_LT_TAGVAR(postdeps, $1) " in
+*" -lc "*) _LT_TAGVAR(archive_cmds_need_lc, $1)=no ;;
+esac
+ _LT_TAGVAR(compiler_lib_search_dirs, $1)=
+if test -n "${_LT_TAGVAR(compiler_lib_search_path, $1)}"; then
+ _LT_TAGVAR(compiler_lib_search_dirs, $1)=`echo " ${_LT_TAGVAR(compiler_lib_search_path, $1)}" | ${SED} -e 's! -L! !g' -e 's!^ !!'`
+fi
+_LT_TAGDECL([], [compiler_lib_search_dirs], [1],
+ [The directories searched by this compiler when creating a shared library])
+_LT_TAGDECL([], [predep_objects], [1],
+ [Dependencies to place before and after the objects being linked to
+ create a shared library])
+_LT_TAGDECL([], [postdep_objects], [1])
+_LT_TAGDECL([], [predeps], [1])
+_LT_TAGDECL([], [postdeps], [1])
+_LT_TAGDECL([], [compiler_lib_search_path], [1],
+ [The library search path used internally by the compiler when linking
+ a shared library])
+])# _LT_SYS_HIDDEN_LIBDEPS
+
+
+# _LT_PROG_F77
+# ------------
+# Since AC_PROG_F77 is broken, in that it returns the empty string
+# if there is no fortran compiler, we have our own version here.
+m4_defun([_LT_PROG_F77],
+[
+pushdef([AC_MSG_ERROR], [_lt_disable_F77=yes])
+AC_PROG_F77
+if test -z "$F77" || test "X$F77" = "Xno"; then
+ _lt_disable_F77=yes
+fi
+popdef([AC_MSG_ERROR])
+])# _LT_PROG_F77
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([_LT_PROG_F77], [])
+
+
+# _LT_LANG_F77_CONFIG([TAG])
+# --------------------------
+# Ensure that the configuration variables for a Fortran 77 compiler are
+# suitably defined. These variables are subsequently used by _LT_CONFIG
+# to write the compiler configuration to `libtool'.
+m4_defun([_LT_LANG_F77_CONFIG],
+[AC_REQUIRE([_LT_PROG_F77])dnl
+AC_LANG_PUSH(Fortran 77)
+
+_LT_TAGVAR(archive_cmds_need_lc, $1)=no
+_LT_TAGVAR(allow_undefined_flag, $1)=
+_LT_TAGVAR(always_export_symbols, $1)=no
+_LT_TAGVAR(archive_expsym_cmds, $1)=
+_LT_TAGVAR(export_dynamic_flag_spec, $1)=
+_LT_TAGVAR(hardcode_direct, $1)=no
+_LT_TAGVAR(hardcode_direct_absolute, $1)=no
+_LT_TAGVAR(hardcode_libdir_flag_spec, $1)=
+_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)=
+_LT_TAGVAR(hardcode_libdir_separator, $1)=
+_LT_TAGVAR(hardcode_minus_L, $1)=no
+_LT_TAGVAR(hardcode_automatic, $1)=no
+_LT_TAGVAR(inherit_rpath, $1)=no
+_LT_TAGVAR(module_cmds, $1)=
+_LT_TAGVAR(module_expsym_cmds, $1)=
+_LT_TAGVAR(link_all_deplibs, $1)=unknown
+_LT_TAGVAR(old_archive_cmds, $1)=$old_archive_cmds
+_LT_TAGVAR(no_undefined_flag, $1)=
+_LT_TAGVAR(whole_archive_flag_spec, $1)=
+_LT_TAGVAR(enable_shared_with_static_runtimes, $1)=no
+
+# Source file extension for f77 test sources.
+ac_ext=f
+
+# Object file extension for compiled f77 test sources.
+objext=o
+_LT_TAGVAR(objext, $1)=$objext
+
+# No sense in running all these tests if we already determined that
+# the F77 compiler isn't working. Some variables (like enable_shared)
+# are currently assumed to apply to all compilers on this platform,
+# and will be corrupted by setting them based on a non-working compiler.
+if test "$_lt_disable_F77" != yes; then
+ # Code to be used in simple compile tests
+ lt_simple_compile_test_code="\
+ subroutine t
+ return
+ end
+"
+
+ # Code to be used in simple link tests
+ lt_simple_link_test_code="\
+ program t
+ end
+"
+
+ # ltmain only uses $CC for tagged configurations so make sure $CC is set.
+ _LT_TAG_COMPILER
+
+ # save warnings/boilerplate of simple test code
+ _LT_COMPILER_BOILERPLATE
+ _LT_LINKER_BOILERPLATE
+
+ # Allow CC to be a program name with arguments.
+ lt_save_CC="$CC"
+ lt_save_GCC=$GCC
+ CC=${F77-"f77"}
+ compiler=$CC
+ _LT_TAGVAR(compiler, $1)=$CC
+ _LT_CC_BASENAME([$compiler])
+ GCC=$G77
+ if test -n "$compiler"; then
+ AC_MSG_CHECKING([if libtool supports shared libraries])
+ AC_MSG_RESULT([$can_build_shared])
+
+ AC_MSG_CHECKING([whether to build shared libraries])
+ test "$can_build_shared" = "no" && enable_shared=no
+
+ # On AIX, shared libraries and static libraries use the same namespace, and
+ # are all built from PIC.
+ case $host_os in
+ aix3*)
+ test "$enable_shared" = yes && enable_static=no
+ if test -n "$RANLIB"; then
+ archive_cmds="$archive_cmds~\$RANLIB \$lib"
+ postinstall_cmds='$RANLIB $lib'
+ fi
+ ;;
+ aix[[4-9]]*)
+ if test "$host_cpu" != ia64 && test "$aix_use_runtimelinking" = no ; then
+ test "$enable_shared" = yes && enable_static=no
+ fi
+ ;;
+ esac
+ AC_MSG_RESULT([$enable_shared])
+
+ AC_MSG_CHECKING([whether to build static libraries])
+ # Make sure either enable_shared or enable_static is yes.
+ test "$enable_shared" = yes || enable_static=yes
+ AC_MSG_RESULT([$enable_static])
+
+ _LT_TAGVAR(GCC, $1)="$G77"
+ _LT_TAGVAR(LD, $1)="$LD"
+
+ ## CAVEAT EMPTOR:
+ ## There is no encapsulation within the following macros, do not change
+ ## the running order or otherwise move them around unless you know exactly
+ ## what you are doing...
+ _LT_COMPILER_PIC($1)
+ _LT_COMPILER_C_O($1)
+ _LT_COMPILER_FILE_LOCKS($1)
+ _LT_LINKER_SHLIBS($1)
+ _LT_SYS_DYNAMIC_LINKER($1)
+ _LT_LINKER_HARDCODE_LIBPATH($1)
+
+ _LT_CONFIG($1)
+ fi # test -n "$compiler"
+
+ GCC=$lt_save_GCC
+ CC="$lt_save_CC"
+fi # test "$_lt_disable_F77" != yes
+
+AC_LANG_POP
+])# _LT_LANG_F77_CONFIG
+
+
+# _LT_PROG_FC
+# -----------
+# Since AC_PROG_FC is broken, in that it returns the empty string
+# if there is no fortran compiler, we have our own version here.
+m4_defun([_LT_PROG_FC],
+[
+pushdef([AC_MSG_ERROR], [_lt_disable_FC=yes])
+AC_PROG_FC
+if test -z "$FC" || test "X$FC" = "Xno"; then
+ _lt_disable_FC=yes
+fi
+popdef([AC_MSG_ERROR])
+])# _LT_PROG_FC
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([_LT_PROG_FC], [])
+
+
+# _LT_LANG_FC_CONFIG([TAG])
+# -------------------------
+# Ensure that the configuration variables for a Fortran compiler are
+# suitably defined. These variables are subsequently used by _LT_CONFIG
+# to write the compiler configuration to `libtool'.
+m4_defun([_LT_LANG_FC_CONFIG],
+[AC_REQUIRE([_LT_PROG_FC])dnl
+AC_LANG_PUSH(Fortran)
+
+_LT_TAGVAR(archive_cmds_need_lc, $1)=no
+_LT_TAGVAR(allow_undefined_flag, $1)=
+_LT_TAGVAR(always_export_symbols, $1)=no
+_LT_TAGVAR(archive_expsym_cmds, $1)=
+_LT_TAGVAR(export_dynamic_flag_spec, $1)=
+_LT_TAGVAR(hardcode_direct, $1)=no
+_LT_TAGVAR(hardcode_direct_absolute, $1)=no
+_LT_TAGVAR(hardcode_libdir_flag_spec, $1)=
+_LT_TAGVAR(hardcode_libdir_flag_spec_ld, $1)=
+_LT_TAGVAR(hardcode_libdir_separator, $1)=
+_LT_TAGVAR(hardcode_minus_L, $1)=no
+_LT_TAGVAR(hardcode_automatic, $1)=no
+_LT_TAGVAR(inherit_rpath, $1)=no
+_LT_TAGVAR(module_cmds, $1)=
+_LT_TAGVAR(module_expsym_cmds, $1)=
+_LT_TAGVAR(link_all_deplibs, $1)=unknown
+_LT_TAGVAR(old_archive_cmds, $1)=$old_archive_cmds
+_LT_TAGVAR(no_undefined_flag, $1)=
+_LT_TAGVAR(whole_archive_flag_spec, $1)=
+_LT_TAGVAR(enable_shared_with_static_runtimes, $1)=no
+
+# Source file extension for fc test sources.
+ac_ext=${ac_fc_srcext-f}
+
+# Object file extension for compiled fc test sources.
+objext=o
+_LT_TAGVAR(objext, $1)=$objext
+
+# No sense in running all these tests if we already determined that
+# the FC compiler isn't working. Some variables (like enable_shared)
+# are currently assumed to apply to all compilers on this platform,
+# and will be corrupted by setting them based on a non-working compiler.
+if test "$_lt_disable_FC" != yes; then
+ # Code to be used in simple compile tests
+ lt_simple_compile_test_code="\
+ subroutine t
+ return
+ end
+"
+
+ # Code to be used in simple link tests
+ lt_simple_link_test_code="\
+ program t
+ end
+"
+
+ # ltmain only uses $CC for tagged configurations so make sure $CC is set.
+ _LT_TAG_COMPILER
+
+ # save warnings/boilerplate of simple test code
+ _LT_COMPILER_BOILERPLATE
+ _LT_LINKER_BOILERPLATE
+
+ # Allow CC to be a program name with arguments.
+ lt_save_CC="$CC"
+ lt_save_GCC=$GCC
+ CC=${FC-"f95"}
+ compiler=$CC
+ GCC=$ac_cv_fc_compiler_gnu
+
+ _LT_TAGVAR(compiler, $1)=$CC
+ _LT_CC_BASENAME([$compiler])
+
+ if test -n "$compiler"; then
+ AC_MSG_CHECKING([if libtool supports shared libraries])
+ AC_MSG_RESULT([$can_build_shared])
+
+ AC_MSG_CHECKING([whether to build shared libraries])
+ test "$can_build_shared" = "no" && enable_shared=no
+
+ # On AIX, shared libraries and static libraries use the same namespace, and
+ # are all built from PIC.
+ case $host_os in
+ aix3*)
+ test "$enable_shared" = yes && enable_static=no
+ if test -n "$RANLIB"; then
+ archive_cmds="$archive_cmds~\$RANLIB \$lib"
+ postinstall_cmds='$RANLIB $lib'
+ fi
+ ;;
+ aix[[4-9]]*)
+ if test "$host_cpu" != ia64 && test "$aix_use_runtimelinking" = no ; then
+ test "$enable_shared" = yes && enable_static=no
+ fi
+ ;;
+ esac
+ AC_MSG_RESULT([$enable_shared])
+
+ AC_MSG_CHECKING([whether to build static libraries])
+ # Make sure either enable_shared or enable_static is yes.
+ test "$enable_shared" = yes || enable_static=yes
+ AC_MSG_RESULT([$enable_static])
+
+ _LT_TAGVAR(GCC, $1)="$ac_cv_fc_compiler_gnu"
+ _LT_TAGVAR(LD, $1)="$LD"
+
+ ## CAVEAT EMPTOR:
+ ## There is no encapsulation within the following macros, do not change
+ ## the running order or otherwise move them around unless you know exactly
+ ## what you are doing...
+ _LT_SYS_HIDDEN_LIBDEPS($1)
+ _LT_COMPILER_PIC($1)
+ _LT_COMPILER_C_O($1)
+ _LT_COMPILER_FILE_LOCKS($1)
+ _LT_LINKER_SHLIBS($1)
+ _LT_SYS_DYNAMIC_LINKER($1)
+ _LT_LINKER_HARDCODE_LIBPATH($1)
+
+ _LT_CONFIG($1)
+ fi # test -n "$compiler"
+
+ GCC=$lt_save_GCC
+ CC="$lt_save_CC"
+fi # test "$_lt_disable_FC" != yes
+
+AC_LANG_POP
+])# _LT_LANG_FC_CONFIG
+
+
+# _LT_LANG_GCJ_CONFIG([TAG])
+# --------------------------
+# Ensure that the configuration variables for the GNU Java Compiler compiler
+# are suitably defined. These variables are subsequently used by _LT_CONFIG
+# to write the compiler configuration to `libtool'.
+m4_defun([_LT_LANG_GCJ_CONFIG],
+[AC_REQUIRE([LT_PROG_GCJ])dnl
+AC_LANG_SAVE
+
+# Source file extension for Java test sources.
+ac_ext=java
+
+# Object file extension for compiled Java test sources.
+objext=o
+_LT_TAGVAR(objext, $1)=$objext
+
+# Code to be used in simple compile tests
+lt_simple_compile_test_code="class foo {}"
+
+# Code to be used in simple link tests
+lt_simple_link_test_code='public class conftest { public static void main(String[[]] argv) {}; }'
+
+# ltmain only uses $CC for tagged configurations so make sure $CC is set.
+_LT_TAG_COMPILER
+
+# save warnings/boilerplate of simple test code
+_LT_COMPILER_BOILERPLATE
+_LT_LINKER_BOILERPLATE
+
+# Allow CC to be a program name with arguments.
+lt_save_CC="$CC"
+lt_save_GCC=$GCC
+GCC=yes
+CC=${GCJ-"gcj"}
+compiler=$CC
+_LT_TAGVAR(compiler, $1)=$CC
+_LT_TAGVAR(LD, $1)="$LD"
+_LT_CC_BASENAME([$compiler])
+
+# GCJ did not exist at the time GCC didn't implicitly link libc in.
+_LT_TAGVAR(archive_cmds_need_lc, $1)=no
+
+_LT_TAGVAR(old_archive_cmds, $1)=$old_archive_cmds
+
+## CAVEAT EMPTOR:
+## There is no encapsulation within the following macros, do not change
+## the running order or otherwise move them around unless you know exactly
+## what you are doing...
+if test -n "$compiler"; then
+ _LT_COMPILER_NO_RTTI($1)
+ _LT_COMPILER_PIC($1)
+ _LT_COMPILER_C_O($1)
+ _LT_COMPILER_FILE_LOCKS($1)
+ _LT_LINKER_SHLIBS($1)
+ _LT_LINKER_HARDCODE_LIBPATH($1)
+
+ _LT_CONFIG($1)
+fi
+
+AC_LANG_RESTORE
+
+GCC=$lt_save_GCC
+CC="$lt_save_CC"
+])# _LT_LANG_GCJ_CONFIG
+
+
+# _LT_LANG_RC_CONFIG([TAG])
+# -------------------------
+# Ensure that the configuration variables for the Windows resource compiler
+# are suitably defined. These variables are subsequently used by _LT_CONFIG
+# to write the compiler configuration to `libtool'.
+m4_defun([_LT_LANG_RC_CONFIG],
+[AC_REQUIRE([LT_PROG_RC])dnl
+AC_LANG_SAVE
+
+# Source file extension for RC test sources.
+ac_ext=rc
+
+# Object file extension for compiled RC test sources.
+objext=o
+_LT_TAGVAR(objext, $1)=$objext
+
+# Code to be used in simple compile tests
+lt_simple_compile_test_code='sample MENU { MENUITEM "&Soup", 100, CHECKED }'
+
+# Code to be used in simple link tests
+lt_simple_link_test_code="$lt_simple_compile_test_code"
+
+# ltmain only uses $CC for tagged configurations so make sure $CC is set.
+_LT_TAG_COMPILER
+
+# save warnings/boilerplate of simple test code
+_LT_COMPILER_BOILERPLATE
+_LT_LINKER_BOILERPLATE
+
+# Allow CC to be a program name with arguments.
+lt_save_CC="$CC"
+lt_save_GCC=$GCC
+GCC=
+CC=${RC-"windres"}
+compiler=$CC
+_LT_TAGVAR(compiler, $1)=$CC
+_LT_CC_BASENAME([$compiler])
+_LT_TAGVAR(lt_cv_prog_compiler_c_o, $1)=yes
+
+if test -n "$compiler"; then
+ :
+ _LT_CONFIG($1)
+fi
+
+GCC=$lt_save_GCC
+AC_LANG_RESTORE
+CC="$lt_save_CC"
+])# _LT_LANG_RC_CONFIG
+
+
+# LT_PROG_GCJ
+# -----------
+AC_DEFUN([LT_PROG_GCJ],
+[m4_ifdef([AC_PROG_GCJ], [AC_PROG_GCJ],
+ [m4_ifdef([A][M_PROG_GCJ], [A][M_PROG_GCJ],
+ [AC_CHECK_TOOL(GCJ, gcj,)
+ test "x${GCJFLAGS+set}" = xset || GCJFLAGS="-g -O2"
+ AC_SUBST(GCJFLAGS)])])[]dnl
+])
+
+# Old name:
+AU_ALIAS([LT_AC_PROG_GCJ], [LT_PROG_GCJ])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([LT_AC_PROG_GCJ], [])
+
+
+# LT_PROG_RC
+# ----------
+AC_DEFUN([LT_PROG_RC],
+[AC_CHECK_TOOL(RC, windres,)
+])
+
+# Old name:
+AU_ALIAS([LT_AC_PROG_RC], [LT_PROG_RC])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([LT_AC_PROG_RC], [])
+
+
+# _LT_DECL_EGREP
+# --------------
+# If we don't have a new enough Autoconf to choose the best grep
+# available, choose the one first in the user's PATH.
+m4_defun([_LT_DECL_EGREP],
+[AC_REQUIRE([AC_PROG_EGREP])dnl
+AC_REQUIRE([AC_PROG_FGREP])dnl
+test -z "$GREP" && GREP=grep
+_LT_DECL([], [GREP], [1], [A grep program that handles long lines])
+_LT_DECL([], [EGREP], [1], [An ERE matcher])
+_LT_DECL([], [FGREP], [1], [A literal string matcher])
+dnl Non-bleeding-edge autoconf doesn't subst GREP, so do it here too
+AC_SUBST([GREP])
+])
+
+
+# _LT_DECL_OBJDUMP
+# --------------
+# If we don't have a new enough Autoconf to choose the best objdump
+# available, choose the one first in the user's PATH.
+m4_defun([_LT_DECL_OBJDUMP],
+[AC_CHECK_TOOL(OBJDUMP, objdump, false)
+test -z "$OBJDUMP" && OBJDUMP=objdump
+_LT_DECL([], [OBJDUMP], [1], [An object symbol dumper])
+AC_SUBST([OBJDUMP])
+])
+
+
+# _LT_DECL_SED
+# ------------
+# Check for a fully-functional sed program, that truncates
+# as few characters as possible. Prefer GNU sed if found.
+m4_defun([_LT_DECL_SED],
+[AC_PROG_SED
+test -z "$SED" && SED=sed
+Xsed="$SED -e 1s/^X//"
+_LT_DECL([], [SED], [1], [A sed program that does not truncate output])
+_LT_DECL([], [Xsed], ["\$SED -e 1s/^X//"],
+ [Sed that helps us avoid accidentally triggering echo(1) options like -n])
+])# _LT_DECL_SED
+
+m4_ifndef([AC_PROG_SED], [
+############################################################
+# NOTE: This macro has been submitted for inclusion into #
+# GNU Autoconf as AC_PROG_SED. When it is available in #
+# a released version of Autoconf we should remove this #
+# macro and use it instead. #
+############################################################
+
+m4_defun([AC_PROG_SED],
+[AC_MSG_CHECKING([for a sed that does not truncate output])
+AC_CACHE_VAL(lt_cv_path_SED,
+[# Loop through the user's path and test for sed and gsed.
+# Then use that list of sed's as ones to test for truncation.
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for lt_ac_prog in sed gsed; do
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if $as_executable_p "$as_dir/$lt_ac_prog$ac_exec_ext"; then
+ lt_ac_sed_list="$lt_ac_sed_list $as_dir/$lt_ac_prog$ac_exec_ext"
+ fi
+ done
+ done
+done
+IFS=$as_save_IFS
+lt_ac_max=0
+lt_ac_count=0
+# Add /usr/xpg4/bin/sed as it is typically found on Solaris
+# along with /bin/sed that truncates output.
+for lt_ac_sed in $lt_ac_sed_list /usr/xpg4/bin/sed; do
+ test ! -f $lt_ac_sed && continue
+ cat /dev/null > conftest.in
+ lt_ac_count=0
+ echo $ECHO_N "0123456789$ECHO_C" >conftest.in
+ # Check for GNU sed and select it if it is found.
+ if "$lt_ac_sed" --version 2>&1 < /dev/null | grep 'GNU' > /dev/null; then
+ lt_cv_path_SED=$lt_ac_sed
+ break
+ fi
+ while true; do
+ cat conftest.in conftest.in >conftest.tmp
+ mv conftest.tmp conftest.in
+ cp conftest.in conftest.nl
+ echo >>conftest.nl
+ $lt_ac_sed -e 's/a$//' < conftest.nl >conftest.out || break
+ cmp -s conftest.out conftest.nl || break
+ # 10000 chars as input seems more than enough
+ test $lt_ac_count -gt 10 && break
+ lt_ac_count=`expr $lt_ac_count + 1`
+ if test $lt_ac_count -gt $lt_ac_max; then
+ lt_ac_max=$lt_ac_count
+ lt_cv_path_SED=$lt_ac_sed
+ fi
+ done
+done
+])
+SED=$lt_cv_path_SED
+AC_SUBST([SED])
+AC_MSG_RESULT([$SED])
+])#AC_PROG_SED
+])#m4_ifndef
+
+# Old name:
+AU_ALIAS([LT_AC_PROG_SED], [AC_PROG_SED])
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([LT_AC_PROG_SED], [])
+
+
+# _LT_CHECK_SHELL_FEATURES
+# ------------------------
+# Find out whether the shell is Bourne or XSI compatible,
+# or has some other useful features.
+m4_defun([_LT_CHECK_SHELL_FEATURES],
+[AC_MSG_CHECKING([whether the shell understands some XSI constructs])
+# Try some XSI features
+xsi_shell=no
+( _lt_dummy="a/b/c"
+ test "${_lt_dummy##*/},${_lt_dummy%/*},"${_lt_dummy%"$_lt_dummy"}, \
+ = c,a/b,, \
+ && eval 'test $(( 1 + 1 )) -eq 2 \
+ && test "${#_lt_dummy}" -eq 5' ) >/dev/null 2>&1 \
+ && xsi_shell=yes
+AC_MSG_RESULT([$xsi_shell])
+_LT_CONFIG_LIBTOOL_INIT([xsi_shell='$xsi_shell'])
+
+AC_MSG_CHECKING([whether the shell understands "+="])
+lt_shell_append=no
+( foo=bar; set foo baz; eval "$[1]+=\$[2]" && test "$foo" = barbaz ) \
+ >/dev/null 2>&1 \
+ && lt_shell_append=yes
+AC_MSG_RESULT([$lt_shell_append])
+_LT_CONFIG_LIBTOOL_INIT([lt_shell_append='$lt_shell_append'])
+
+if ( (MAIL=60; unset MAIL) || exit) >/dev/null 2>&1; then
+ lt_unset=unset
+else
+ lt_unset=false
+fi
+_LT_DECL([], [lt_unset], [0], [whether the shell understands "unset"])dnl
+
+# test EBCDIC or ASCII
+case `echo X|tr X '\101'` in
+ A) # ASCII based system
+ # \n is not interpreted correctly by Solaris 8 /usr/ucb/tr
+ lt_SP2NL='tr \040 \012'
+ lt_NL2SP='tr \015\012 \040\040'
+ ;;
+ *) # EBCDIC based system
+ lt_SP2NL='tr \100 \n'
+ lt_NL2SP='tr \r\n \100\100'
+ ;;
+esac
+_LT_DECL([SP2NL], [lt_SP2NL], [1], [turn spaces into newlines])dnl
+_LT_DECL([NL2SP], [lt_NL2SP], [1], [turn newlines into spaces])dnl
+])# _LT_CHECK_SHELL_FEATURES
+
+
+# _LT_PROG_XSI_SHELLFNS
+# ---------------------
+# Bourne and XSI compatible variants of some useful shell functions.
+m4_defun([_LT_PROG_XSI_SHELLFNS],
+[case $xsi_shell in
+ yes)
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_dirname file append nondir_replacement
+# Compute the dirname of FILE. If nonempty, add APPEND to the result,
+# otherwise set result to NONDIR_REPLACEMENT.
+func_dirname ()
+{
+ case ${1} in
+ */*) func_dirname_result="${1%/*}${2}" ;;
+ * ) func_dirname_result="${3}" ;;
+ esac
+}
+
+# func_basename file
+func_basename ()
+{
+ func_basename_result="${1##*/}"
+}
+
+# func_dirname_and_basename file append nondir_replacement
+# perform func_basename and func_dirname in a single function
+# call:
+# dirname: Compute the dirname of FILE. If nonempty,
+# add APPEND to the result, otherwise set result
+# to NONDIR_REPLACEMENT.
+# value returned in "$func_dirname_result"
+# basename: Compute filename of FILE.
+# value retuned in "$func_basename_result"
+# Implementation must be kept synchronized with func_dirname
+# and func_basename. For efficiency, we do not delegate to
+# those functions but instead duplicate the functionality here.
+func_dirname_and_basename ()
+{
+ case ${1} in
+ */*) func_dirname_result="${1%/*}${2}" ;;
+ * ) func_dirname_result="${3}" ;;
+ esac
+ func_basename_result="${1##*/}"
+}
+
+# func_stripname prefix suffix name
+# strip PREFIX and SUFFIX off of NAME.
+# PREFIX and SUFFIX must not contain globbing or regex special
+# characters, hashes, percent signs, but SUFFIX may contain a leading
+# dot (in which case that matches only a dot).
+func_stripname ()
+{
+ # pdksh 5.2.14 does not do ${X%$Y} correctly if both X and Y are
+ # positional parameters, so assign one to ordinary parameter first.
+ func_stripname_result=${3}
+ func_stripname_result=${func_stripname_result#"${1}"}
+ func_stripname_result=${func_stripname_result%"${2}"}
+}
+
+# func_opt_split
+func_opt_split ()
+{
+ func_opt_split_opt=${1%%=*}
+ func_opt_split_arg=${1#*=}
+}
+
+# func_lo2o object
+func_lo2o ()
+{
+ case ${1} in
+ *.lo) func_lo2o_result=${1%.lo}.${objext} ;;
+ *) func_lo2o_result=${1} ;;
+ esac
+}
+
+# func_xform libobj-or-source
+func_xform ()
+{
+ func_xform_result=${1%.*}.lo
+}
+
+# func_arith arithmetic-term...
+func_arith ()
+{
+ func_arith_result=$(( $[*] ))
+}
+
+# func_len string
+# STRING may not start with a hyphen.
+func_len ()
+{
+ func_len_result=${#1}
+}
+
+_LT_EOF
+ ;;
+ *) # Bourne compatible functions.
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_dirname file append nondir_replacement
+# Compute the dirname of FILE. If nonempty, add APPEND to the result,
+# otherwise set result to NONDIR_REPLACEMENT.
+func_dirname ()
+{
+ # Extract subdirectory from the argument.
+ func_dirname_result=`$ECHO "X${1}" | $Xsed -e "$dirname"`
+ if test "X$func_dirname_result" = "X${1}"; then
+ func_dirname_result="${3}"
+ else
+ func_dirname_result="$func_dirname_result${2}"
+ fi
+}
+
+# func_basename file
+func_basename ()
+{
+ func_basename_result=`$ECHO "X${1}" | $Xsed -e "$basename"`
+}
+
+dnl func_dirname_and_basename
+dnl A portable version of this function is already defined in general.m4sh
+dnl so there is no need for it here.
+
+# func_stripname prefix suffix name
+# strip PREFIX and SUFFIX off of NAME.
+# PREFIX and SUFFIX must not contain globbing or regex special
+# characters, hashes, percent signs, but SUFFIX may contain a leading
+# dot (in which case that matches only a dot).
+# func_strip_suffix prefix name
+func_stripname ()
+{
+ case ${2} in
+ .*) func_stripname_result=`$ECHO "X${3}" \
+ | $Xsed -e "s%^${1}%%" -e "s%\\\\${2}\$%%"`;;
+ *) func_stripname_result=`$ECHO "X${3}" \
+ | $Xsed -e "s%^${1}%%" -e "s%${2}\$%%"`;;
+ esac
+}
+
+# sed scripts:
+my_sed_long_opt='1s/^\(-[[^=]]*\)=.*/\1/;q'
+my_sed_long_arg='1s/^-[[^=]]*=//'
+
+# func_opt_split
+func_opt_split ()
+{
+ func_opt_split_opt=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_opt"`
+ func_opt_split_arg=`$ECHO "X${1}" | $Xsed -e "$my_sed_long_arg"`
+}
+
+# func_lo2o object
+func_lo2o ()
+{
+ func_lo2o_result=`$ECHO "X${1}" | $Xsed -e "$lo2o"`
+}
+
+# func_xform libobj-or-source
+func_xform ()
+{
+ func_xform_result=`$ECHO "X${1}" | $Xsed -e 's/\.[[^.]]*$/.lo/'`
+}
+
+# func_arith arithmetic-term...
+func_arith ()
+{
+ func_arith_result=`expr "$[@]"`
+}
+
+# func_len string
+# STRING may not start with a hyphen.
+func_len ()
+{
+ func_len_result=`expr "$[1]" : ".*" 2>/dev/null || echo $max_cmd_len`
+}
+
+_LT_EOF
+esac
+
+case $lt_shell_append in
+ yes)
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_append var value
+# Append VALUE to the end of shell variable VAR.
+func_append ()
+{
+ eval "$[1]+=\$[2]"
+}
+_LT_EOF
+ ;;
+ *)
+ cat << \_LT_EOF >> "$cfgfile"
+
+# func_append var value
+# Append VALUE to the end of shell variable VAR.
+func_append ()
+{
+ eval "$[1]=\$$[1]\$[2]"
+}
+
+_LT_EOF
+ ;;
+ esac
+])
diff --git a/make/m4/ltoptions.m4 b/make/m4/ltoptions.m4
new file mode 100644
index 0000000..34151a3
--- /dev/null
+++ b/make/m4/ltoptions.m4
@@ -0,0 +1,368 @@
+# Helper functions for option handling. -*- Autoconf -*-
+#
+# Copyright (C) 2004, 2005, 2007, 2008 Free Software Foundation, Inc.
+# Written by Gary V. Vaughan, 2004
+#
+# This file is free software; the Free Software Foundation gives
+# unlimited permission to copy and/or distribute it, with or without
+# modifications, as long as this notice is preserved.
+
+# serial 6 ltoptions.m4
+
+# This is to help aclocal find these macros, as it can't see m4_define.
+AC_DEFUN([LTOPTIONS_VERSION], [m4_if([1])])
+
+
+# _LT_MANGLE_OPTION(MACRO-NAME, OPTION-NAME)
+# ------------------------------------------
+m4_define([_LT_MANGLE_OPTION],
+[[_LT_OPTION_]m4_bpatsubst($1__$2, [[^a-zA-Z0-9_]], [_])])
+
+
+# _LT_SET_OPTION(MACRO-NAME, OPTION-NAME)
+# ---------------------------------------
+# Set option OPTION-NAME for macro MACRO-NAME, and if there is a
+# matching handler defined, dispatch to it. Other OPTION-NAMEs are
+# saved as a flag.
+m4_define([_LT_SET_OPTION],
+[m4_define(_LT_MANGLE_OPTION([$1], [$2]))dnl
+m4_ifdef(_LT_MANGLE_DEFUN([$1], [$2]),
+ _LT_MANGLE_DEFUN([$1], [$2]),
+ [m4_warning([Unknown $1 option `$2'])])[]dnl
+])
+
+
+# _LT_IF_OPTION(MACRO-NAME, OPTION-NAME, IF-SET, [IF-NOT-SET])
+# ------------------------------------------------------------
+# Execute IF-SET if OPTION is set, IF-NOT-SET otherwise.
+m4_define([_LT_IF_OPTION],
+[m4_ifdef(_LT_MANGLE_OPTION([$1], [$2]), [$3], [$4])])
+
+
+# _LT_UNLESS_OPTIONS(MACRO-NAME, OPTION-LIST, IF-NOT-SET)
+# -------------------------------------------------------
+# Execute IF-NOT-SET unless all options in OPTION-LIST for MACRO-NAME
+# are set.
+m4_define([_LT_UNLESS_OPTIONS],
+[m4_foreach([_LT_Option], m4_split(m4_normalize([$2])),
+ [m4_ifdef(_LT_MANGLE_OPTION([$1], _LT_Option),
+ [m4_define([$0_found])])])[]dnl
+m4_ifdef([$0_found], [m4_undefine([$0_found])], [$3
+])[]dnl
+])
+
+
+# _LT_SET_OPTIONS(MACRO-NAME, OPTION-LIST)
+# ----------------------------------------
+# OPTION-LIST is a space-separated list of Libtool options associated
+# with MACRO-NAME. If any OPTION has a matching handler declared with
+# LT_OPTION_DEFINE, dispatch to that macro; otherwise complain about
+# the unknown option and exit.
+m4_defun([_LT_SET_OPTIONS],
+[# Set options
+m4_foreach([_LT_Option], m4_split(m4_normalize([$2])),
+ [_LT_SET_OPTION([$1], _LT_Option)])
+
+m4_if([$1],[LT_INIT],[
+ dnl
+ dnl Simply set some default values (i.e off) if boolean options were not
+ dnl specified:
+ _LT_UNLESS_OPTIONS([LT_INIT], [dlopen], [enable_dlopen=no
+ ])
+ _LT_UNLESS_OPTIONS([LT_INIT], [win32-dll], [enable_win32_dll=no
+ ])
+ dnl
+ dnl If no reference was made to various pairs of opposing options, then
+ dnl we run the default mode handler for the pair. For example, if neither
+ dnl `shared' nor `disable-shared' was passed, we enable building of shared
+ dnl archives by default:
+ _LT_UNLESS_OPTIONS([LT_INIT], [shared disable-shared], [_LT_ENABLE_SHARED])
+ _LT_UNLESS_OPTIONS([LT_INIT], [static disable-static], [_LT_ENABLE_STATIC])
+ _LT_UNLESS_OPTIONS([LT_INIT], [pic-only no-pic], [_LT_WITH_PIC])
+ _LT_UNLESS_OPTIONS([LT_INIT], [fast-install disable-fast-install],
+ [_LT_ENABLE_FAST_INSTALL])
+ ])
+])# _LT_SET_OPTIONS
+
+
+## --------------------------------- ##
+## Macros to handle LT_INIT options. ##
+## --------------------------------- ##
+
+# _LT_MANGLE_DEFUN(MACRO-NAME, OPTION-NAME)
+# -----------------------------------------
+m4_define([_LT_MANGLE_DEFUN],
+[[_LT_OPTION_DEFUN_]m4_bpatsubst(m4_toupper([$1__$2]), [[^A-Z0-9_]], [_])])
+
+
+# LT_OPTION_DEFINE(MACRO-NAME, OPTION-NAME, CODE)
+# -----------------------------------------------
+m4_define([LT_OPTION_DEFINE],
+[m4_define(_LT_MANGLE_DEFUN([$1], [$2]), [$3])[]dnl
+])# LT_OPTION_DEFINE
+
+
+# dlopen
+# ------
+LT_OPTION_DEFINE([LT_INIT], [dlopen], [enable_dlopen=yes
+])
+
+AU_DEFUN([AC_LIBTOOL_DLOPEN],
+[_LT_SET_OPTION([LT_INIT], [dlopen])
+AC_DIAGNOSE([obsolete],
+[$0: Remove this warning and the call to _LT_SET_OPTION when you
+put the `dlopen' option into LT_INIT's first parameter.])
+])
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_DLOPEN], [])
+
+
+# win32-dll
+# ---------
+# Declare package support for building win32 dll's.
+LT_OPTION_DEFINE([LT_INIT], [win32-dll],
+[enable_win32_dll=yes
+
+case $host in
+*-*-cygwin* | *-*-mingw* | *-*-pw32* | *-cegcc*)
+ AC_CHECK_TOOL(AS, as, false)
+ AC_CHECK_TOOL(DLLTOOL, dlltool, false)
+ AC_CHECK_TOOL(OBJDUMP, objdump, false)
+ ;;
+esac
+
+test -z "$AS" && AS=as
+_LT_DECL([], [AS], [0], [Assembler program])dnl
+
+test -z "$DLLTOOL" && DLLTOOL=dlltool
+_LT_DECL([], [DLLTOOL], [0], [DLL creation program])dnl
+
+test -z "$OBJDUMP" && OBJDUMP=objdump
+_LT_DECL([], [OBJDUMP], [0], [Object dumper program])dnl
+])# win32-dll
+
+AU_DEFUN([AC_LIBTOOL_WIN32_DLL],
+[AC_REQUIRE([AC_CANONICAL_HOST])dnl
+_LT_SET_OPTION([LT_INIT], [win32-dll])
+AC_DIAGNOSE([obsolete],
+[$0: Remove this warning and the call to _LT_SET_OPTION when you
+put the `win32-dll' option into LT_INIT's first parameter.])
+])
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_WIN32_DLL], [])
+
+
+# _LT_ENABLE_SHARED([DEFAULT])
+# ----------------------------
+# implement the --enable-shared flag, and supports the `shared' and
+# `disable-shared' LT_INIT options.
+# DEFAULT is either `yes' or `no'. If omitted, it defaults to `yes'.
+m4_define([_LT_ENABLE_SHARED],
+[m4_define([_LT_ENABLE_SHARED_DEFAULT], [m4_if($1, no, no, yes)])dnl
+AC_ARG_ENABLE([shared],
+ [AS_HELP_STRING([--enable-shared@<:@=PKGS@:>@],
+ [build shared libraries @<:@default=]_LT_ENABLE_SHARED_DEFAULT[@:>@])],
+ [p=${PACKAGE-default}
+ case $enableval in
+ yes) enable_shared=yes ;;
+ no) enable_shared=no ;;
+ *)
+ enable_shared=no
+ # Look at the argument we got. We use all the common list separators.
+ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR,"
+ for pkg in $enableval; do
+ IFS="$lt_save_ifs"
+ if test "X$pkg" = "X$p"; then
+ enable_shared=yes
+ fi
+ done
+ IFS="$lt_save_ifs"
+ ;;
+ esac],
+ [enable_shared=]_LT_ENABLE_SHARED_DEFAULT)
+
+ _LT_DECL([build_libtool_libs], [enable_shared], [0],
+ [Whether or not to build shared libraries])
+])# _LT_ENABLE_SHARED
+
+LT_OPTION_DEFINE([LT_INIT], [shared], [_LT_ENABLE_SHARED([yes])])
+LT_OPTION_DEFINE([LT_INIT], [disable-shared], [_LT_ENABLE_SHARED([no])])
+
+# Old names:
+AC_DEFUN([AC_ENABLE_SHARED],
+[_LT_SET_OPTION([LT_INIT], m4_if([$1], [no], [disable-])[shared])
+])
+
+AC_DEFUN([AC_DISABLE_SHARED],
+[_LT_SET_OPTION([LT_INIT], [disable-shared])
+])
+
+AU_DEFUN([AM_ENABLE_SHARED], [AC_ENABLE_SHARED($@)])
+AU_DEFUN([AM_DISABLE_SHARED], [AC_DISABLE_SHARED($@)])
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AM_ENABLE_SHARED], [])
+dnl AC_DEFUN([AM_DISABLE_SHARED], [])
+
+
+
+# _LT_ENABLE_STATIC([DEFAULT])
+# ----------------------------
+# implement the --enable-static flag, and support the `static' and
+# `disable-static' LT_INIT options.
+# DEFAULT is either `yes' or `no'. If omitted, it defaults to `yes'.
+m4_define([_LT_ENABLE_STATIC],
+[m4_define([_LT_ENABLE_STATIC_DEFAULT], [m4_if($1, no, no, yes)])dnl
+AC_ARG_ENABLE([static],
+ [AS_HELP_STRING([--enable-static@<:@=PKGS@:>@],
+ [build static libraries @<:@default=]_LT_ENABLE_STATIC_DEFAULT[@:>@])],
+ [p=${PACKAGE-default}
+ case $enableval in
+ yes) enable_static=yes ;;
+ no) enable_static=no ;;
+ *)
+ enable_static=no
+ # Look at the argument we got. We use all the common list separators.
+ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR,"
+ for pkg in $enableval; do
+ IFS="$lt_save_ifs"
+ if test "X$pkg" = "X$p"; then
+ enable_static=yes
+ fi
+ done
+ IFS="$lt_save_ifs"
+ ;;
+ esac],
+ [enable_static=]_LT_ENABLE_STATIC_DEFAULT)
+
+ _LT_DECL([build_old_libs], [enable_static], [0],
+ [Whether or not to build static libraries])
+])# _LT_ENABLE_STATIC
+
+LT_OPTION_DEFINE([LT_INIT], [static], [_LT_ENABLE_STATIC([yes])])
+LT_OPTION_DEFINE([LT_INIT], [disable-static], [_LT_ENABLE_STATIC([no])])
+
+# Old names:
+AC_DEFUN([AC_ENABLE_STATIC],
+[_LT_SET_OPTION([LT_INIT], m4_if([$1], [no], [disable-])[static])
+])
+
+AC_DEFUN([AC_DISABLE_STATIC],
+[_LT_SET_OPTION([LT_INIT], [disable-static])
+])
+
+AU_DEFUN([AM_ENABLE_STATIC], [AC_ENABLE_STATIC($@)])
+AU_DEFUN([AM_DISABLE_STATIC], [AC_DISABLE_STATIC($@)])
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AM_ENABLE_STATIC], [])
+dnl AC_DEFUN([AM_DISABLE_STATIC], [])
+
+
+
+# _LT_ENABLE_FAST_INSTALL([DEFAULT])
+# ----------------------------------
+# implement the --enable-fast-install flag, and support the `fast-install'
+# and `disable-fast-install' LT_INIT options.
+# DEFAULT is either `yes' or `no'. If omitted, it defaults to `yes'.
+m4_define([_LT_ENABLE_FAST_INSTALL],
+[m4_define([_LT_ENABLE_FAST_INSTALL_DEFAULT], [m4_if($1, no, no, yes)])dnl
+AC_ARG_ENABLE([fast-install],
+ [AS_HELP_STRING([--enable-fast-install@<:@=PKGS@:>@],
+ [optimize for fast installation @<:@default=]_LT_ENABLE_FAST_INSTALL_DEFAULT[@:>@])],
+ [p=${PACKAGE-default}
+ case $enableval in
+ yes) enable_fast_install=yes ;;
+ no) enable_fast_install=no ;;
+ *)
+ enable_fast_install=no
+ # Look at the argument we got. We use all the common list separators.
+ lt_save_ifs="$IFS"; IFS="${IFS}$PATH_SEPARATOR,"
+ for pkg in $enableval; do
+ IFS="$lt_save_ifs"
+ if test "X$pkg" = "X$p"; then
+ enable_fast_install=yes
+ fi
+ done
+ IFS="$lt_save_ifs"
+ ;;
+ esac],
+ [enable_fast_install=]_LT_ENABLE_FAST_INSTALL_DEFAULT)
+
+_LT_DECL([fast_install], [enable_fast_install], [0],
+ [Whether or not to optimize for fast installation])dnl
+])# _LT_ENABLE_FAST_INSTALL
+
+LT_OPTION_DEFINE([LT_INIT], [fast-install], [_LT_ENABLE_FAST_INSTALL([yes])])
+LT_OPTION_DEFINE([LT_INIT], [disable-fast-install], [_LT_ENABLE_FAST_INSTALL([no])])
+
+# Old names:
+AU_DEFUN([AC_ENABLE_FAST_INSTALL],
+[_LT_SET_OPTION([LT_INIT], m4_if([$1], [no], [disable-])[fast-install])
+AC_DIAGNOSE([obsolete],
+[$0: Remove this warning and the call to _LT_SET_OPTION when you put
+the `fast-install' option into LT_INIT's first parameter.])
+])
+
+AU_DEFUN([AC_DISABLE_FAST_INSTALL],
+[_LT_SET_OPTION([LT_INIT], [disable-fast-install])
+AC_DIAGNOSE([obsolete],
+[$0: Remove this warning and the call to _LT_SET_OPTION when you put
+the `disable-fast-install' option into LT_INIT's first parameter.])
+])
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_ENABLE_FAST_INSTALL], [])
+dnl AC_DEFUN([AM_DISABLE_FAST_INSTALL], [])
+
+
+# _LT_WITH_PIC([MODE])
+# --------------------
+# implement the --with-pic flag, and support the `pic-only' and `no-pic'
+# LT_INIT options.
+# MODE is either `yes' or `no'. If omitted, it defaults to `both'.
+m4_define([_LT_WITH_PIC],
+[AC_ARG_WITH([pic],
+ [AS_HELP_STRING([--with-pic],
+ [try to use only PIC/non-PIC objects @<:@default=use both@:>@])],
+ [pic_mode="$withval"],
+ [pic_mode=default])
+
+test -z "$pic_mode" && pic_mode=m4_default([$1], [default])
+
+_LT_DECL([], [pic_mode], [0], [What type of objects to build])dnl
+])# _LT_WITH_PIC
+
+LT_OPTION_DEFINE([LT_INIT], [pic-only], [_LT_WITH_PIC([yes])])
+LT_OPTION_DEFINE([LT_INIT], [no-pic], [_LT_WITH_PIC([no])])
+
+# Old name:
+AU_DEFUN([AC_LIBTOOL_PICMODE],
+[_LT_SET_OPTION([LT_INIT], [pic-only])
+AC_DIAGNOSE([obsolete],
+[$0: Remove this warning and the call to _LT_SET_OPTION when you
+put the `pic-only' option into LT_INIT's first parameter.])
+])
+
+dnl aclocal-1.4 backwards compatibility:
+dnl AC_DEFUN([AC_LIBTOOL_PICMODE], [])
+
+## ----------------- ##
+## LTDL_INIT Options ##
+## ----------------- ##
+
+m4_define([_LTDL_MODE], [])
+LT_OPTION_DEFINE([LTDL_INIT], [nonrecursive],
+ [m4_define([_LTDL_MODE], [nonrecursive])])
+LT_OPTION_DEFINE([LTDL_INIT], [recursive],
+ [m4_define([_LTDL_MODE], [recursive])])
+LT_OPTION_DEFINE([LTDL_INIT], [subproject],
+ [m4_define([_LTDL_MODE], [subproject])])
+
+m4_define([_LTDL_TYPE], [])
+LT_OPTION_DEFINE([LTDL_INIT], [installable],
+ [m4_define([_LTDL_TYPE], [installable])])
+LT_OPTION_DEFINE([LTDL_INIT], [convenience],
+ [m4_define([_LTDL_TYPE], [convenience])])
diff --git a/make/m4/ltsugar.m4 b/make/m4/ltsugar.m4
new file mode 100644
index 0000000..9000a05
--- /dev/null
+++ b/make/m4/ltsugar.m4
@@ -0,0 +1,123 @@
+# ltsugar.m4 -- libtool m4 base layer. -*-Autoconf-*-
+#
+# Copyright (C) 2004, 2005, 2007, 2008 Free Software Foundation, Inc.
+# Written by Gary V. Vaughan, 2004
+#
+# This file is free software; the Free Software Foundation gives
+# unlimited permission to copy and/or distribute it, with or without
+# modifications, as long as this notice is preserved.
+
+# serial 6 ltsugar.m4
+
+# This is to help aclocal find these macros, as it can't see m4_define.
+AC_DEFUN([LTSUGAR_VERSION], [m4_if([0.1])])
+
+
+# lt_join(SEP, ARG1, [ARG2...])
+# -----------------------------
+# Produce ARG1SEPARG2...SEPARGn, omitting [] arguments and their
+# associated separator.
+# Needed until we can rely on m4_join from Autoconf 2.62, since all earlier
+# versions in m4sugar had bugs.
+m4_define([lt_join],
+[m4_if([$#], [1], [],
+ [$#], [2], [[$2]],
+ [m4_if([$2], [], [], [[$2]_])$0([$1], m4_shift(m4_shift($@)))])])
+m4_define([_lt_join],
+[m4_if([$#$2], [2], [],
+ [m4_if([$2], [], [], [[$1$2]])$0([$1], m4_shift(m4_shift($@)))])])
+
+
+# lt_car(LIST)
+# lt_cdr(LIST)
+# ------------
+# Manipulate m4 lists.
+# These macros are necessary as long as will still need to support
+# Autoconf-2.59 which quotes differently.
+m4_define([lt_car], [[$1]])
+m4_define([lt_cdr],
+[m4_if([$#], 0, [m4_fatal([$0: cannot be called without arguments])],
+ [$#], 1, [],
+ [m4_dquote(m4_shift($@))])])
+m4_define([lt_unquote], $1)
+
+
+# lt_append(MACRO-NAME, STRING, [SEPARATOR])
+# ------------------------------------------
+# Redefine MACRO-NAME to hold its former content plus `SEPARATOR'`STRING'.
+# Note that neither SEPARATOR nor STRING are expanded; they are appended
+# to MACRO-NAME as is (leaving the expansion for when MACRO-NAME is invoked).
+# No SEPARATOR is output if MACRO-NAME was previously undefined (different
+# than defined and empty).
+#
+# This macro is needed until we can rely on Autoconf 2.62, since earlier
+# versions of m4sugar mistakenly expanded SEPARATOR but not STRING.
+m4_define([lt_append],
+[m4_define([$1],
+ m4_ifdef([$1], [m4_defn([$1])[$3]])[$2])])
+
+
+
+# lt_combine(SEP, PREFIX-LIST, INFIX, SUFFIX1, [SUFFIX2...])
+# ----------------------------------------------------------
+# Produce a SEP delimited list of all paired combinations of elements of
+# PREFIX-LIST with SUFFIX1 through SUFFIXn. Each element of the list
+# has the form PREFIXmINFIXSUFFIXn.
+# Needed until we can rely on m4_combine added in Autoconf 2.62.
+m4_define([lt_combine],
+[m4_if(m4_eval([$# > 3]), [1],
+ [m4_pushdef([_Lt_sep], [m4_define([_Lt_sep], m4_defn([lt_car]))])]]dnl
+[[m4_foreach([_Lt_prefix], [$2],
+ [m4_foreach([_Lt_suffix],
+ ]m4_dquote(m4_dquote(m4_shift(m4_shift(m4_shift($@)))))[,
+ [_Lt_sep([$1])[]m4_defn([_Lt_prefix])[$3]m4_defn([_Lt_suffix])])])])])
+
+
+# lt_if_append_uniq(MACRO-NAME, VARNAME, [SEPARATOR], [UNIQ], [NOT-UNIQ])
+# -----------------------------------------------------------------------
+# Iff MACRO-NAME does not yet contain VARNAME, then append it (delimited
+# by SEPARATOR if supplied) and expand UNIQ, else NOT-UNIQ.
+m4_define([lt_if_append_uniq],
+[m4_ifdef([$1],
+ [m4_if(m4_index([$3]m4_defn([$1])[$3], [$3$2$3]), [-1],
+ [lt_append([$1], [$2], [$3])$4],
+ [$5])],
+ [lt_append([$1], [$2], [$3])$4])])
+
+
+# lt_dict_add(DICT, KEY, VALUE)
+# -----------------------------
+m4_define([lt_dict_add],
+[m4_define([$1($2)], [$3])])
+
+
+# lt_dict_add_subkey(DICT, KEY, SUBKEY, VALUE)
+# --------------------------------------------
+m4_define([lt_dict_add_subkey],
+[m4_define([$1($2:$3)], [$4])])
+
+
+# lt_dict_fetch(DICT, KEY, [SUBKEY])
+# ----------------------------------
+m4_define([lt_dict_fetch],
+[m4_ifval([$3],
+ m4_ifdef([$1($2:$3)], [m4_defn([$1($2:$3)])]),
+ m4_ifdef([$1($2)], [m4_defn([$1($2)])]))])
+
+
+# lt_if_dict_fetch(DICT, KEY, [SUBKEY], VALUE, IF-TRUE, [IF-FALSE])
+# -----------------------------------------------------------------
+m4_define([lt_if_dict_fetch],
+[m4_if(lt_dict_fetch([$1], [$2], [$3]), [$4],
+ [$5],
+ [$6])])
+
+
+# lt_dict_filter(DICT, [SUBKEY], VALUE, [SEPARATOR], KEY, [...])
+# --------------------------------------------------------------
+m4_define([lt_dict_filter],
+[m4_if([$5], [], [],
+ [lt_join(m4_quote(m4_default([$4], [[, ]])),
+ lt_unquote(m4_split(m4_normalize(m4_foreach(_Lt_key, lt_car([m4_shiftn(4, $@)]),
+ [lt_if_dict_fetch([$1], _Lt_key, [$2], [$3], [_Lt_key ])])))))])[]dnl
+])
diff --git a/make/m4/ltversion.m4 b/make/m4/ltversion.m4
new file mode 100644
index 0000000..f3c5309
--- /dev/null
+++ b/make/m4/ltversion.m4
@@ -0,0 +1,23 @@
+# ltversion.m4 -- version numbers -*- Autoconf -*-
+#
+# Copyright (C) 2004 Free Software Foundation, Inc.
+# Written by Scott James Remnant, 2004
+#
+# This file is free software; the Free Software Foundation gives
+# unlimited permission to copy and/or distribute it, with or without
+# modifications, as long as this notice is preserved.
+
+# Generated from ltversion.in.
+
+# serial 3017 ltversion.m4
+# This file is part of GNU Libtool
+
+m4_define([LT_PACKAGE_VERSION], [2.2.6b])
+m4_define([LT_PACKAGE_REVISION], [1.3017])
+
+AC_DEFUN([LTVERSION_VERSION],
+[macro_version='2.2.6b'
+macro_revision='1.3017'
+_LT_DECL(, macro_version, 0, [Which release of libtool.m4 was used?])
+_LT_DECL(, macro_revision, 0)
+])
diff --git a/make/m4/lt~obsolete.m4 b/make/m4/lt~obsolete.m4
new file mode 100644
index 0000000..637bb20
--- /dev/null
+++ b/make/m4/lt~obsolete.m4
@@ -0,0 +1,92 @@
+# lt~obsolete.m4 -- aclocal satisfying obsolete definitions. -*-Autoconf-*-
+#
+# Copyright (C) 2004, 2005, 2007 Free Software Foundation, Inc.
+# Written by Scott James Remnant, 2004.
+#
+# This file is free software; the Free Software Foundation gives
+# unlimited permission to copy and/or distribute it, with or without
+# modifications, as long as this notice is preserved.
+
+# serial 4 lt~obsolete.m4
+
+# These exist entirely to fool aclocal when bootstrapping libtool.
+#
+# In the past libtool.m4 has provided macros via AC_DEFUN (or AU_DEFUN)
+# which have later been changed to m4_define as they aren't part of the
+# exported API, or moved to Autoconf or Automake where they belong.
+#
+# The trouble is, aclocal is a bit thick. It'll see the old AC_DEFUN
+# in /usr/share/aclocal/libtool.m4 and remember it, then when it sees us
+# using a macro with the same name in our local m4/libtool.m4 it'll
+# pull the old libtool.m4 in (it doesn't see our shiny new m4_define
+# and doesn't know about Autoconf macros at all.)
+#
+# So we provide this file, which has a silly filename so it's always
+# included after everything else. This provides aclocal with the
+# AC_DEFUNs it wants, but when m4 processes it, it doesn't do anything
+# because those macros already exist, or will be overwritten later.
+# We use AC_DEFUN over AU_DEFUN for compatibility with aclocal-1.6.
+#
+# Anytime we withdraw an AC_DEFUN or AU_DEFUN, remember to add it here.
+# Yes, that means every name once taken will need to remain here until
+# we give up compatibility with versions before 1.7, at which point
+# we need to keep only those names which we still refer to.
+
+# This is to help aclocal find these macros, as it can't see m4_define.
+AC_DEFUN([LTOBSOLETE_VERSION], [m4_if([1])])
+
+m4_ifndef([AC_LIBTOOL_LINKER_OPTION], [AC_DEFUN([AC_LIBTOOL_LINKER_OPTION])])
+m4_ifndef([AC_PROG_EGREP], [AC_DEFUN([AC_PROG_EGREP])])
+m4_ifndef([_LT_AC_PROG_ECHO_BACKSLASH], [AC_DEFUN([_LT_AC_PROG_ECHO_BACKSLASH])])
+m4_ifndef([_LT_AC_SHELL_INIT], [AC_DEFUN([_LT_AC_SHELL_INIT])])
+m4_ifndef([_LT_AC_SYS_LIBPATH_AIX], [AC_DEFUN([_LT_AC_SYS_LIBPATH_AIX])])
+m4_ifndef([_LT_PROG_LTMAIN], [AC_DEFUN([_LT_PROG_LTMAIN])])
+m4_ifndef([_LT_AC_TAGVAR], [AC_DEFUN([_LT_AC_TAGVAR])])
+m4_ifndef([AC_LTDL_ENABLE_INSTALL], [AC_DEFUN([AC_LTDL_ENABLE_INSTALL])])
+m4_ifndef([AC_LTDL_PREOPEN], [AC_DEFUN([AC_LTDL_PREOPEN])])
+m4_ifndef([_LT_AC_SYS_COMPILER], [AC_DEFUN([_LT_AC_SYS_COMPILER])])
+m4_ifndef([_LT_AC_LOCK], [AC_DEFUN([_LT_AC_LOCK])])
+m4_ifndef([AC_LIBTOOL_SYS_OLD_ARCHIVE], [AC_DEFUN([AC_LIBTOOL_SYS_OLD_ARCHIVE])])
+m4_ifndef([_LT_AC_TRY_DLOPEN_SELF], [AC_DEFUN([_LT_AC_TRY_DLOPEN_SELF])])
+m4_ifndef([AC_LIBTOOL_PROG_CC_C_O], [AC_DEFUN([AC_LIBTOOL_PROG_CC_C_O])])
+m4_ifndef([AC_LIBTOOL_SYS_HARD_LINK_LOCKS], [AC_DEFUN([AC_LIBTOOL_SYS_HARD_LINK_LOCKS])])
+m4_ifndef([AC_LIBTOOL_OBJDIR], [AC_DEFUN([AC_LIBTOOL_OBJDIR])])
+m4_ifndef([AC_LTDL_OBJDIR], [AC_DEFUN([AC_LTDL_OBJDIR])])
+m4_ifndef([AC_LIBTOOL_PROG_LD_HARDCODE_LIBPATH], [AC_DEFUN([AC_LIBTOOL_PROG_LD_HARDCODE_LIBPATH])])
+m4_ifndef([AC_LIBTOOL_SYS_LIB_STRIP], [AC_DEFUN([AC_LIBTOOL_SYS_LIB_STRIP])])
+m4_ifndef([AC_PATH_MAGIC], [AC_DEFUN([AC_PATH_MAGIC])])
+m4_ifndef([AC_PROG_LD_GNU], [AC_DEFUN([AC_PROG_LD_GNU])])
+m4_ifndef([AC_PROG_LD_RELOAD_FLAG], [AC_DEFUN([AC_PROG_LD_RELOAD_FLAG])])
+m4_ifndef([AC_DEPLIBS_CHECK_METHOD], [AC_DEFUN([AC_DEPLIBS_CHECK_METHOD])])
+m4_ifndef([AC_LIBTOOL_PROG_COMPILER_NO_RTTI], [AC_DEFUN([AC_LIBTOOL_PROG_COMPILER_NO_RTTI])])
+m4_ifndef([AC_LIBTOOL_SYS_GLOBAL_SYMBOL_PIPE], [AC_DEFUN([AC_LIBTOOL_SYS_GLOBAL_SYMBOL_PIPE])])
+m4_ifndef([AC_LIBTOOL_PROG_COMPILER_PIC], [AC_DEFUN([AC_LIBTOOL_PROG_COMPILER_PIC])])
+m4_ifndef([AC_LIBTOOL_PROG_LD_SHLIBS], [AC_DEFUN([AC_LIBTOOL_PROG_LD_SHLIBS])])
+m4_ifndef([AC_LIBTOOL_POSTDEP_PREDEP], [AC_DEFUN([AC_LIBTOOL_POSTDEP_PREDEP])])
+m4_ifndef([LT_AC_PROG_EGREP], [AC_DEFUN([LT_AC_PROG_EGREP])])
+m4_ifndef([LT_AC_PROG_SED], [AC_DEFUN([LT_AC_PROG_SED])])
+m4_ifndef([_LT_CC_BASENAME], [AC_DEFUN([_LT_CC_BASENAME])])
+m4_ifndef([_LT_COMPILER_BOILERPLATE], [AC_DEFUN([_LT_COMPILER_BOILERPLATE])])
+m4_ifndef([_LT_LINKER_BOILERPLATE], [AC_DEFUN([_LT_LINKER_BOILERPLATE])])
+m4_ifndef([_AC_PROG_LIBTOOL], [AC_DEFUN([_AC_PROG_LIBTOOL])])
+m4_ifndef([AC_LIBTOOL_SETUP], [AC_DEFUN([AC_LIBTOOL_SETUP])])
+m4_ifndef([_LT_AC_CHECK_DLFCN], [AC_DEFUN([_LT_AC_CHECK_DLFCN])])
+m4_ifndef([AC_LIBTOOL_SYS_DYNAMIC_LINKER], [AC_DEFUN([AC_LIBTOOL_SYS_DYNAMIC_LINKER])])
+m4_ifndef([_LT_AC_TAGCONFIG], [AC_DEFUN([_LT_AC_TAGCONFIG])])
+m4_ifndef([AC_DISABLE_FAST_INSTALL], [AC_DEFUN([AC_DISABLE_FAST_INSTALL])])
+m4_ifndef([_LT_AC_LANG_CXX], [AC_DEFUN([_LT_AC_LANG_CXX])])
+m4_ifndef([_LT_AC_LANG_F77], [AC_DEFUN([_LT_AC_LANG_F77])])
+m4_ifndef([_LT_AC_LANG_GCJ], [AC_DEFUN([_LT_AC_LANG_GCJ])])
+m4_ifndef([AC_LIBTOOL_RC], [AC_DEFUN([AC_LIBTOOL_RC])])
+m4_ifndef([AC_LIBTOOL_LANG_C_CONFIG], [AC_DEFUN([AC_LIBTOOL_LANG_C_CONFIG])])
+m4_ifndef([_LT_AC_LANG_C_CONFIG], [AC_DEFUN([_LT_AC_LANG_C_CONFIG])])
+m4_ifndef([AC_LIBTOOL_LANG_CXX_CONFIG], [AC_DEFUN([AC_LIBTOOL_LANG_CXX_CONFIG])])
+m4_ifndef([_LT_AC_LANG_CXX_CONFIG], [AC_DEFUN([_LT_AC_LANG_CXX_CONFIG])])
+m4_ifndef([AC_LIBTOOL_LANG_F77_CONFIG], [AC_DEFUN([AC_LIBTOOL_LANG_F77_CONFIG])])
+m4_ifndef([_LT_AC_LANG_F77_CONFIG], [AC_DEFUN([_LT_AC_LANG_F77_CONFIG])])
+m4_ifndef([AC_LIBTOOL_LANG_GCJ_CONFIG], [AC_DEFUN([AC_LIBTOOL_LANG_GCJ_CONFIG])])
+m4_ifndef([_LT_AC_LANG_GCJ_CONFIG], [AC_DEFUN([_LT_AC_LANG_GCJ_CONFIG])])
+m4_ifndef([AC_LIBTOOL_LANG_RC_CONFIG], [AC_DEFUN([AC_LIBTOOL_LANG_RC_CONFIG])])
+m4_ifndef([_LT_AC_LANG_RC_CONFIG], [AC_DEFUN([_LT_AC_LANG_RC_CONFIG])])
+m4_ifndef([AC_LIBTOOL_CONFIG], [AC_DEFUN([AC_LIBTOOL_CONFIG])])
+m4_ifndef([_LT_AC_FILE_LTDLL_C], [AC_DEFUN([_LT_AC_FILE_LTDLL_C])])
diff --git a/make/m4/rl_configure.m4 b/make/m4/rl_configure.m4
new file mode 100644
index 0000000..80d2b08
--- /dev/null
+++ b/make/m4/rl_configure.m4
@@ -0,0 +1,136 @@
+# Ritchie Lab base autoconfigure script
+# Checks for standard necessary libraries and adds options to
+
+# Arguments are as follows:
+# 1 - Boost version requirement
+# 2 - space separated list of HAVE_* required to run
+# 3 - Python version requirement
+# 4 - comma or space separated list of python modules needed
+
+AC_DEFUN([RL_CONFIGURE],
+[
+
+
+
+# Checks for programs.
+AC_PROG_INSTALL
+AC_PROG_MAKE_SET
+AC_PROG_RANLIB
+AC_PROG_LIBTOOL
+
+# Checks for --enable-loki
+AX_CHECK_ENABLE_LOKI
+
+# Checks for libraries.
+# FIXME: Replace `main' with a function in `-lmysqlclient':
+AC_CHECK_LIB([mysqlclient], [main])
+# FIXME: This needs to be fixed to correctly check for mysql client
+AM_CONDITIONAL(HAVE_MYSQL,false)
+
+AC_CHECK_LIB([pthread], [main])
+AC_CHECK_LIB([z], [main])
+
+# Checks for libraries.
+AX_PATH_GSL([1.0],[AC_DEFINE([HAVE_GSL],[],[GSL Available])],[AC_DEFINE([NO_GSL],[],[No GSL Found])])
+
+# Biobin/ biofilter use sqlite 3.5.4 (group_concat)
+PKG_CHECK_MODULES([SQLITE],[sqlite3 >= 3.5.4], [AC_DEFINE([HAVE_SQLITE],[],[SQLite is available])],[AC_DEFINE([NO_SQLITE],[],[No SQLite library available])])
+PKG_CHECK_MODULES([PNG],[libpng >= 1.2.10], [AC_DEFINE([HAVE_PNG],[],[Png Library Available])],[AC_DEFINE([NO_PNG],[],[No PNG library available])])
+PKG_CHECK_MODULES([LIBR], [libR >= 2.10], [AC_DEFINE([HAVE_R],[],[R Library Available])],[AC_DEFINE([NO_R],[],[No R available])])
+AX_FREETYPE_BASE([2.2.0])
+
+AX_SOCI_CORE
+AX_SOCI_SQLITE
+
+# If desired, automake will have a conditional "USE_R" which will be true
+# If not, "USE_R" will be false. Also, will define the macro "USE_R" on the
+# command line for compilation flags.
+
+#Check for boost
+AX_BOOST_BASE([$1])
+AX_BOOST_LIB([system],[boost::system::system_category],[],[boost/system/error_code.hpp])
+AX_BOOST_LIB([thread],[boost::thread_group thrds;],[$BOOST_SYSTEM_LIB])
+AX_BOOST_LIB([regex],[boost::regex r();])
+AX_BOOST_LIB([filesystem],[boost::filesystem::path my_path("foo/bar/data.txt");],[$BOOST_SYSTEM_LIB])
+AX_BOOST_LIB([program_options],[boost::program_options::options_description po;])
+AX_BOOST_LIB([iostreams],[boost::iostreams::zlib_decompressor();],[-lz],[boost/iostreams/filter/zlib.hpp])
+AX_BOOST_LIB([serialization],[boost::archive::binary_oarchive a(std::cout)],[],[boost/archive/binary_oarchive.hpp])
+
+AC_LANG_PUSH(C)
+
+#OK, now go through and make sure that we have everything that you requested:
+rl_found_all="yes"
+for rl_defn in $2; do
+ AC_TRY_CPP([#ifndef $rl_defn
+ #error "Library not found"
+ #endif
+ ],[rl_found=yes],[rl_found=no])
+ if test "$rl_found" != "yes"; then
+ rl_lib=`echo $rl_defn | sed 's/^HAVE_//g'`
+ AC_MSG_WARN([Could not find $rl_lib library])
+ rl_found_all=no
+ fi
+done
+
+
+if test "$rl_found_all" != "yes"; then
+ AC_MSG_ERROR([Cound not find all prerequisite libraries. Please check the library locations])
+fi
+
+# Check for the python version, but only if given!
+if test "x$3" != "x"; then
+ AC_PATH_PROG([PYTHON],[python])
+ if test "x$PYTHON" = "x"; then
+ AC_MSG_ERROR([Could not find python executable. Please ensure that Python version $3 is in the PATH])
+ else
+ AX_PROG_PYTHON_VERSION([$3],[rl_found_python="yes"],[rl_found_python="no"])
+ if test "x$rl_found_python" != "xyes"; then
+ AC_MSG_ERROR([The Python executable is too old. Please update your python to version $3])
+ fi
+ fi
+fi
+
+rl_found_mods="yes"
+for rl_mod in $4; do
+ AX_PYTHON_MODULE([$rl_mod],[1])
+done
+
+# Checks for header files.
+AC_HEADER_STDC
+AC_CHECK_HEADERS([arpa/inet.h fcntl.h fenv.h float.h inttypes.h limits.h malloc.h netdb.h netinet/in.h stddef.h stdint.h stdlib.h string.h strings.h sys/file.h sys/ioctl.h sys/mount.h sys/param.h sys/socket.h sys/timeb.h syslog.h unistd.h wchar.h])
+
+# Checks for typedefs, structures, and compiler characteristics.
+AC_HEADER_STDBOOL
+AC_C_CONST
+AC_C_INLINE
+
+if test "$ac_cv_c_inline" != no ; then
+ AC_DEFINE([HAVE_INLINE],[1],[I have inline!])
+ AC_SUBST(HAVE_INLINE)
+fi
+
+AC_TYPE_MODE_T
+AC_TYPE_OFF_T
+AC_TYPE_PID_T
+AC_TYPE_SIZE_T
+AC_HEADER_TIME
+AC_STRUCT_TM
+AC_C_VOLATILE
+AC_TYPE_UID_T
+AC_CHECK_TYPES([ptrdiff_t])
+
+
+# Checks for library functions.
+AC_FUNC_ERROR_AT_LINE
+AC_FUNC_MALLOC
+AC_FUNC_MEMCMP
+AC_FUNC_MKTIME
+AC_FUNC_REALLOC
+AC_FUNC_SELECT_ARGTYPES
+AC_FUNC_STAT
+AC_FUNC_STRFTIME
+AC_FUNC_STRTOD
+AC_FUNC_VPRINTF
+AC_CHECK_FUNCS([bzero clock_gettime fdatasync floor ftime ftruncate getcwd gethrtime gettimeofday localtime_r memmove memset mkdir pow select socket sqrt strchr strrchr strerror])
+
+])
diff --git a/method_lib/Makefile.am b/method_lib/Makefile.am
new file mode 100644
index 0000000..9346ee8
--- /dev/null
+++ b/method_lib/Makefile.am
@@ -0,0 +1,317 @@
+noinst_LTLIBRARIES=libmethods.la
+
+AM_CPPFLAGS=$(BOOST_CPPFLAGS) $(GSL_CFLAGS) -I$(top_srcdir)
+AM_LDFLAGS=$(GSL_LDFLAGS)
+
+libmethods_la_SOURCES= data/BiallelicSample.h \
+data/BiallelicSample.cpp \
+data/DataSet.h \
+data/DataSet.cpp \
+data/Family.cpp \
+data/Family.h \
+data/Marker.cpp \
+data/Marker.h \
+data/PhasedBiallelicSample.cpp \
+data/PhasedBiallelicSample.h \
+data/PhasedPolyallelicSample.cpp \
+data/PhasedPolyallelicSample.h \
+data/PolyallelicSample.cpp \
+data/PolyallelicSample.h \
+data/Sample.cpp \
+data/Sample.h \
+util/DataLoader.cpp \
+util/DataLoader.h \
+util/OutputPLINK.h \
+util/OutputPLINK.cpp \
+util/Logger.h \
+util/Logger.cpp \
+util/CommandLineParser.h \
+util/InputManager.h \
+util/InputManager.cpp \
+util/Missing.h \
+util/Missing.cpp \
+util/GSLUtils.h \
+util/GSLUtils.cpp \
+util/ICompressedFile.h \
+util/ICompressedFile.cpp \
+util/MPIUtils.h \
+util/MPIUtils.cpp \
+util/ThreadPool.h \
+util/ThreadPool.cpp \
+analysis/Correction.h \
+analysis/Correction.cpp \
+analysis/Encoding.h \
+analysis/Encoding.cpp \
+analysis/Regression.h \
+analysis/Regression.cpp
+
+libmethods_la_LIBADD=$(GSL_LIBS) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_IOSTREAMS_LIB) $(BOOST_SERIALIZATION_LIB)
+
+libmethods_orig_src=AlleleFrequency.cc \
+AlleleFrequency.h \
+BEAGLEOutput.cc \
+BEAGLEOutput.h \
+BINOutput.cc \
+BINOutput.h \
+BoxCoxTransform.cpp \
+BoxCoxTransform.h \
+CaConChisq.cc \
+CaConChisq.h \
+cdflib.h \
+ChiSquareAllelic.cpp \
+ChiSquareAllelic.h \
+ChiSquareArmitage.cpp \
+ChiSquareArmitage.h \
+ChiSquare.cpp \
+ChiSquare.h \
+ClusterMissing.cc \
+CMH.cpp \
+CMH.h \
+ComboGenerator.cpp \
+ComboGenerator.h \
+Concordance.cc \
+Concordance.h \
+conditional_lr.cpp \
+conditional_lr.h \
+CondLogRegression.cpp \
+CondLogRegression.h \
+ContingencyTable.cpp \
+ContingencyTable.h \
+Covariate.cpp \
+Covariate.h \
+CovTrait.cpp \
+CovTrait.h \
+DataSet.cpp \
+DataSet.h \
+dcdflib.cpp \
+Deletions.cc \
+Deletions.h \
+EigenstratOutput.cc \
+EigenstratOutput.h \
+Epistasis.cc \
+Epistasis.h \
+Family.cc \
+Family.h \
+FBATOutput.cc \
+FBATOutput.h \
+FilterProcess.cpp \
+FilterProcess.h \
+filters/AlleleFrequencyFilter.cpp \
+filters/AlleleFrequencyFilter.h \
+filters/Analysis.cpp \
+filters/Analysis.h \
+filters/AnalysisSet.cpp \
+filters/AnalysisSet.h \
+filters/ArmitageFilter.cpp \
+filters/ArmitageFilter.h \
+filters/BinSnpFileReader.cpp \
+filters/BinSnpFileReader.h \
+filters/BioBinaryReader.cpp \
+filters/BioBinaryReader.h \
+filters/BioFilter.cpp \
+filters/BioFilter.h \
+filters/ChiSquareFilter.cpp \
+filters/ChiSquareFilter.h \
+filters/ConditionalLRFilter.cpp \
+filters/ConditionalLRFilter.h \
+filters/ConfigFileReader.cpp \
+filters/ConfigFileReader.h \
+filters/ConfigReader.h \
+filters/ContingencyFilter.cpp \
+filters/ContingencyFilter.h \
+filters/DataDefinitions.h \
+filters/DataExcept.cpp \
+filters/DataExcept.h \
+filters/FileResults.cpp \
+filters/FileResults.h \
+filters/Filter.cpp \
+filters/FilterExcept.cpp \
+filters/FilterExcept.h \
+filters/FilterFactory.cpp \
+filters/FilterFactory.h \
+filters/Filter.h \
+filters/Filters.h \
+filters/LikelihoodRatioFilter.cpp \
+filters/LikelihoodRatioFilter.h \
+filters/LogInfo.cpp \
+filters/LogInfo.h \
+filters/LogRegFilter.cpp \
+filters/LogRegFilter.h \
+filters/MarkerGenoFilter.cpp \
+filters/MarkerGenoFilter.h \
+filters/MaxScoreFilter.cpp \
+filters/MaxScoreFilter.h \
+filters/MDRFilter.cpp \
+filters/MDRFilter.h \
+filters/MDRPDTFilter.cpp \
+filters/MDRPDTFilter.h \
+filters/NMIFilter.cpp \
+filters/NMIFilter.h \
+filters/OddsRatioFilter.cpp \
+filters/OddsRatioFilter.h \
+filters/OutputWriterFactory.cpp \
+filters/OutputWriterFactory.h \
+filters/PermScoreFilter.cpp \
+filters/PermScoreFilter.h \
+filters/Permutation.cpp \
+filters/Permutation.h \
+filters/PlatoDefinitions.h \
+filters/PlatoExcept.h \
+filters/ResultSet.h \
+filters/ResultsManager.cpp \
+filters/ResultsManager.h \
+filters/SnpFileReader.h \
+filters/Stringmanip.cpp \
+filters/Stringmanip.h \
+filters/TextSnpFileReader.cpp \
+filters/TextSnpFileReader.h \
+filters/UncertaintyCoeffFilter.cpp \
+filters/UncertaintyCoeffFilter.h \
+FisherExact.cpp \
+FisherExact.h \
+FlatIndex.cpp \
+FlatIndex.h \
+Fst.cc \
+Fst.h \
+GenderCheck.cc \
+GenderCheck.h \
+General.cc \
+General.h \
+Globals.h \
+GRROutput.cc \
+GRROutput.h \
+Helpers.cc \
+Helpers.h \
+Homozygous.cc \
+Homozygous.h \
+HWEquilibrium.cc \
+HWEquilibrium.h \
+IBS.cc \
+IBS.h \
+ImputeOutput.cc \
+ImputeOutput.h \
+InputFilter.cpp \
+InputFilter.h \
+ipmpar.cpp \
+Kinship.cc \
+Kinship.h \
+LAPISOutput.cc \
+LAPISOutput.h \
+LD.cc \
+LD.h \
+LikelihoodRatio.cpp \
+LikelihoodRatio.h \
+LinearRegression.cpp \
+LinearRegression.h \
+LogisticRegression.cpp \
+LogisticRegression.h \
+LogTransform.cpp \
+LogTransform.h \
+Marker.cc \
+MarkerGenoEff.cc \
+MarkerGenoEff.h \
+Marker.h \
+max.h \
+MDR.cpp \
+MDR.h \
+MDROutput.cc \
+MDROutput.h \
+MDRPDT.cpp \
+MDRPDT.h \
+mdrpdt/evaluationmethod.cpp \
+mdrpdt/evaluationmethod.h \
+mdrpdt/familyrepository.cpp \
+mdrpdt/familyrepository.h \
+mdrpdt/foldproduction.cpp \
+mdrpdt/foldproduction.h \
+mdrpdt/foldstatistic.cpp \
+mdrpdt/foldstatistic.h \
+mdrpdt/genotypecounter.h \
+mdrpdt/genotyperepository.cpp \
+mdrpdt/genotyperepository.h \
+mdrpdt/individual.cpp \
+mdrpdt/individual.h \
+mdrpdt/lineparser.cpp \
+mdrpdt/lineparser.h \
+mdrpdt/matchedoddsratio.cpp \
+mdrpdt/matchedoddsratio.h \
+mdrpdt/MDRPDTRepository.cpp \
+mdrpdt/MDRPDTRepository.h \
+mdrpdt/mersenne.cpp \
+mdrpdt/orderreport.cpp \
+mdrpdt/orderreport.h \
+mdrpdt/pdtmodel.cpp \
+mdrpdt/pdtmodel.h \
+mdrpdt/pedigree.cpp \
+mdrpdt/pedigree.h \
+mdrpdt/ptestdistribution.cpp \
+mdrpdt/ptestdistribution.h \
+mdrpdt/randomc.h \
+mdrpdt/random.cpp \
+mdrpdt/random.h \
+mdrpdt/rbtree.h \
+mdrpdt/sibship.cpp \
+mdrpdt/sibship.h \
+mdrpdt/strings.cpp \
+mdrpdt/strings.h \
+mdrpdt/tfinalreport.cpp \
+mdrpdt/tfinalreport.h \
+mdrpdt/tstatistic.cpp \
+mdrpdt/tstatistic.h \
+mdrpdt/types.h \
+mdrpdt/utility.h \
+MendelianErrors.cc \
+MendelianErrors.h \
+MitoCheck.cc \
+MitoCheck.h \
+Model.cpp \
+Model.h \
+MultComparison.cpp \
+MultComparison.h \
+NMI.cpp \
+NMI.h \
+OddsRatio.cpp \
+OddsRatio.h \
+Options.cc \
+Options.h \
+PDT2Output.cc \
+PDT2Output.h \
+PEDOutput.cc \
+PEDOutput.h \
+PHASEOutput.cc \
+PHASEOutput.h \
+PowerMarkerOutput.cc \
+PowerMarkerOutput.h \
+QTDTOutput.cc \
+QTDTOutput.h \
+RunTDT.cc \
+RunTDT.h \
+Sample.cc \
+SampleGenoEff.cc \
+SampleGenoEff.h \
+Sample.h \
+SquareRootTransform.cpp \
+SquareRootTransform.h \
+StepOptions.cc \
+StepOptions.h \
+STRUCTOutput.cc \
+STRUCTOutput.h \
+SuperlinkOutput.cc \
+SuperlinkOutput.h \
+TPEDOutput.cpp \
+TPEDOutput.h \
+Trait.cpp \
+Trait.h \
+UncertaintyCoefficient.cpp \
+UncertaintyCoefficient.h \
+MethodException.h \
+ClusterMissing.h \
+filters/FilterDefinitions.h \
+filters/OutputWriter.h \
+mdrpdt/exception.h \
+LinRegression.h \
+LinRegression.cpp \
+Regression.h \
+Interactions.cpp \
+Interactions.h
+
diff --git a/method_lib/Makefile.in b/method_lib/Makefile.in
new file mode 100644
index 0000000..cfd393a
--- /dev/null
+++ b/method_lib/Makefile.in
@@ -0,0 +1,1009 @@
+# Makefile.in generated by automake 1.11.1 from Makefile.am.
+# @configure_input@
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008, 2009 Free Software Foundation,
+# Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+ at SET_MAKE@
+
+VPATH = @srcdir@
+pkgdatadir = $(datadir)/@PACKAGE@
+pkgincludedir = $(includedir)/@PACKAGE@
+pkglibdir = $(libdir)/@PACKAGE@
+pkglibexecdir = $(libexecdir)/@PACKAGE@
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = @build@
+host_triplet = @host@
+subdir = method_lib
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/make/m4/ax_boost_base.m4 \
+ $(top_srcdir)/make/m4/ax_boost_lib.m4 \
+ $(top_srcdir)/make/m4/ax_check_enable_debug.m4 \
+ $(top_srcdir)/make/m4/ax_check_enable_loki.m4 \
+ $(top_srcdir)/make/m4/ax_compare_version.m4 \
+ $(top_srcdir)/make/m4/ax_freetype_base.m4 \
+ $(top_srcdir)/make/m4/ax_path_gsl.m4 \
+ $(top_srcdir)/make/m4/ax_prog_cc_mpi.m4 \
+ $(top_srcdir)/make/m4/ax_prog_cxx_mpi.m4 \
+ $(top_srcdir)/make/m4/ax_prog_python_version.m4 \
+ $(top_srcdir)/make/m4/ax_python_module.m4 \
+ $(top_srcdir)/make/m4/ax_soci_core.m4 \
+ $(top_srcdir)/make/m4/ax_soci_sqlite.m4 \
+ $(top_srcdir)/make/m4/libtool.m4 \
+ $(top_srcdir)/make/m4/ltoptions.m4 \
+ $(top_srcdir)/make/m4/ltsugar.m4 \
+ $(top_srcdir)/make/m4/ltversion.m4 \
+ $(top_srcdir)/make/m4/lt~obsolete.m4 \
+ $(top_srcdir)/make/m4/rl_configure.m4 \
+ $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+ $(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+CONFIG_CLEAN_VPATH_FILES =
+LTLIBRARIES = $(noinst_LTLIBRARIES)
+am__DEPENDENCIES_1 =
+libmethods_la_DEPENDENCIES = $(am__DEPENDENCIES_1) \
+ $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_1) \
+ $(am__DEPENDENCIES_1)
+am_libmethods_la_OBJECTS = BiallelicSample.lo DataSet.lo Family.lo \
+ Marker.lo PhasedBiallelicSample.lo PhasedPolyallelicSample.lo \
+ PolyallelicSample.lo Sample.lo DataLoader.lo OutputPLINK.lo \
+ Logger.lo InputManager.lo Missing.lo GSLUtils.lo \
+ ICompressedFile.lo MPIUtils.lo ThreadPool.lo Correction.lo \
+ Encoding.lo Regression.lo
+libmethods_la_OBJECTS = $(am_libmethods_la_OBJECTS)
+DEFAULT_INCLUDES = -I. at am__isrc@ -I$(top_builddir)
+depcomp = $(SHELL) $(top_srcdir)/depcomp
+am__depfiles_maybe = depfiles
+am__mv = mv -f
+CXXCOMPILE = $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
+LTCXXCOMPILE = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS)
+CXXLD = $(CXX)
+CXXLINK = $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=link $(CXXLD) $(AM_CXXFLAGS) $(CXXFLAGS) $(AM_LDFLAGS) \
+ $(LDFLAGS) -o $@
+COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+LTCOMPILE = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) \
+ $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+CCLD = $(CC)
+LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+ --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+ $(LDFLAGS) -o $@
+SOURCES = $(libmethods_la_SOURCES)
+DIST_SOURCES = $(libmethods_la_SOURCES)
+ETAGS = etags
+CTAGS = ctags
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = @ACLOCAL@
+AMTAR = @AMTAR@
+AR = @AR@
+AUTOCONF = @AUTOCONF@
+AUTOHEADER = @AUTOHEADER@
+AUTOMAKE = @AUTOMAKE@
+AWK = @AWK@
+BOOST_CPPFLAGS = @BOOST_CPPFLAGS@
+BOOST_FILESYSTEM_LIB = @BOOST_FILESYSTEM_LIB@
+BOOST_IOSTREAMS_LIB = @BOOST_IOSTREAMS_LIB@
+BOOST_LDFLAGS = @BOOST_LDFLAGS@
+BOOST_PROGRAM_OPTIONS_LIB = @BOOST_PROGRAM_OPTIONS_LIB@
+BOOST_REGEX_LIB = @BOOST_REGEX_LIB@
+BOOST_SERIALIZATION_LIB = @BOOST_SERIALIZATION_LIB@
+BOOST_SYSTEM_LIB = @BOOST_SYSTEM_LIB@
+BOOST_THREAD_LIB = @BOOST_THREAD_LIB@
+CC = @CC@
+CCDEPMODE = @CCDEPMODE@
+CFLAGS = @CFLAGS@
+CPP = @CPP@
+CPPFLAGS = @CPPFLAGS@
+CXX = @CXX@
+CXXCPP = @CXXCPP@
+CXXDEPMODE = @CXXDEPMODE@
+CXXFLAGS = @CXXFLAGS@
+CYGPATH_W = @CYGPATH_W@
+DEFS = @DEFS@
+DEPDIR = @DEPDIR@
+DSYMUTIL = @DSYMUTIL@
+DUMPBIN = @DUMPBIN@
+ECHO_C = @ECHO_C@
+ECHO_N = @ECHO_N@
+ECHO_T = @ECHO_T@
+EGREP = @EGREP@
+EXEEXT = @EXEEXT@
+FGREP = @FGREP@
+FREETYPE_CPPFLAGS = @FREETYPE_CPPFLAGS@
+FREETYPE_LDFLAGS = @FREETYPE_LDFLAGS@
+FREETYPE_LIB = @FREETYPE_LIB@
+GREP = @GREP@
+GSL_CFLAGS = @GSL_CFLAGS@
+GSL_CONFIG = @GSL_CONFIG@
+GSL_LDFLAGS = @GSL_LDFLAGS@
+GSL_LIBS = @GSL_LIBS@
+HAVE_INLINE = @HAVE_INLINE@
+INSTALL = @INSTALL@
+INSTALL_DATA = @INSTALL_DATA@
+INSTALL_PROGRAM = @INSTALL_PROGRAM@
+INSTALL_SCRIPT = @INSTALL_SCRIPT@
+INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
+LD = @LD@
+LDFLAGS = @LDFLAGS@
+LIBOBJS = @LIBOBJS@
+LIBR_CFLAGS = @LIBR_CFLAGS@
+LIBR_LIBS = @LIBR_LIBS@
+LIBS = @LIBS@
+LIBTOOL = @LIBTOOL@
+LIPO = @LIPO@
+LN_S = @LN_S@
+LTLIBOBJS = @LTLIBOBJS@
+MAKEINFO = @MAKEINFO@
+MKDIR_P = @MKDIR_P@
+MPICC = @MPICC@
+MPICXX = @MPICXX@
+NM = @NM@
+NMEDIT = @NMEDIT@
+OBJDUMP = @OBJDUMP@
+OBJEXT = @OBJEXT@
+OTOOL = @OTOOL@
+OTOOL64 = @OTOOL64@
+PACKAGE = @PACKAGE@
+PACKAGE_BUGREPORT = @PACKAGE_BUGREPORT@
+PACKAGE_NAME = @PACKAGE_NAME@
+PACKAGE_STRING = @PACKAGE_STRING@
+PACKAGE_TARNAME = @PACKAGE_TARNAME@
+PACKAGE_VERSION = @PACKAGE_VERSION@
+PATH_SEPARATOR = @PATH_SEPARATOR@
+PKG_CONFIG = @PKG_CONFIG@
+PNG_CFLAGS = @PNG_CFLAGS@
+PNG_LIBS = @PNG_LIBS@
+POW_LIB = @POW_LIB@
+PYTHON = @PYTHON@
+PYTHON_VERSION = @PYTHON_VERSION@
+RANLIB = @RANLIB@
+SED = @SED@
+SET_MAKE = @SET_MAKE@
+SHELL = @SHELL@
+SOCI_CPPFLAGS = @SOCI_CPPFLAGS@
+SOCI_LDFLAGS = @SOCI_LDFLAGS@
+SOCI_LIB = @SOCI_LIB@
+SOCI_SQLITE_CPPFLAGS = @SOCI_SQLITE_CPPFLAGS@
+SOCI_SQLITE_LDFLAGS = @SOCI_SQLITE_LDFLAGS@
+SOCI_SQLITE_LIB = @SOCI_SQLITE_LIB@
+SQLITE_CFLAGS = @SQLITE_CFLAGS@
+SQLITE_LIBS = @SQLITE_LIBS@
+STRIP = @STRIP@
+VERSION = @VERSION@
+abs_builddir = @abs_builddir@
+abs_srcdir = @abs_srcdir@
+abs_top_builddir = @abs_top_builddir@
+abs_top_srcdir = @abs_top_srcdir@
+ac_ct_CC = @ac_ct_CC@
+ac_ct_CXX = @ac_ct_CXX@
+ac_ct_DUMPBIN = @ac_ct_DUMPBIN@
+am__include = @am__include@
+am__leading_dot = @am__leading_dot@
+am__quote = @am__quote@
+am__tar = @am__tar@
+am__untar = @am__untar@
+bindir = @bindir@
+build = @build@
+build_alias = @build_alias@
+build_cpu = @build_cpu@
+build_os = @build_os@
+build_vendor = @build_vendor@
+builddir = @builddir@
+datadir = @datadir@
+datarootdir = @datarootdir@
+docdir = @docdir@
+dvidir = @dvidir@
+exec_prefix = @exec_prefix@
+host = @host@
+host_alias = @host_alias@
+host_cpu = @host_cpu@
+host_os = @host_os@
+host_vendor = @host_vendor@
+htmldir = @htmldir@
+includedir = @includedir@
+infodir = @infodir@
+install_sh = @install_sh@
+libdir = @libdir@
+libexecdir = @libexecdir@
+localedir = @localedir@
+localstatedir = @localstatedir@
+lt_ECHO = @lt_ECHO@
+mandir = @mandir@
+mkdir_p = @mkdir_p@
+oldincludedir = @oldincludedir@
+pdfdir = @pdfdir@
+prefix = @prefix@
+program_transform_name = @program_transform_name@
+psdir = @psdir@
+sbindir = @sbindir@
+sharedstatedir = @sharedstatedir@
+srcdir = @srcdir@
+sysconfdir = @sysconfdir@
+target_alias = @target_alias@
+top_build_prefix = @top_build_prefix@
+top_builddir = @top_builddir@
+top_srcdir = @top_srcdir@
+noinst_LTLIBRARIES = libmethods.la
+AM_CPPFLAGS = $(BOOST_CPPFLAGS) $(GSL_CFLAGS) -I$(top_srcdir)
+AM_LDFLAGS = $(GSL_LDFLAGS)
+libmethods_la_SOURCES = data/BiallelicSample.h \
+data/BiallelicSample.cpp \
+data/DataSet.h \
+data/DataSet.cpp \
+data/Family.cpp \
+data/Family.h \
+data/Marker.cpp \
+data/Marker.h \
+data/PhasedBiallelicSample.cpp \
+data/PhasedBiallelicSample.h \
+data/PhasedPolyallelicSample.cpp \
+data/PhasedPolyallelicSample.h \
+data/PolyallelicSample.cpp \
+data/PolyallelicSample.h \
+data/Sample.cpp \
+data/Sample.h \
+util/DataLoader.cpp \
+util/DataLoader.h \
+util/OutputPLINK.h \
+util/OutputPLINK.cpp \
+util/Logger.h \
+util/Logger.cpp \
+util/CommandLineParser.h \
+util/InputManager.h \
+util/InputManager.cpp \
+util/Missing.h \
+util/Missing.cpp \
+util/GSLUtils.h \
+util/GSLUtils.cpp \
+util/ICompressedFile.h \
+util/ICompressedFile.cpp \
+util/MPIUtils.h \
+util/MPIUtils.cpp \
+util/ThreadPool.h \
+util/ThreadPool.cpp \
+analysis/Correction.h \
+analysis/Correction.cpp \
+analysis/Encoding.h \
+analysis/Encoding.cpp \
+analysis/Regression.h \
+analysis/Regression.cpp
+
+libmethods_la_LIBADD = $(GSL_LIBS) $(BOOST_PROGRAM_OPTIONS_LIB) $(BOOST_IOSTREAMS_LIB) $(BOOST_SERIALIZATION_LIB)
+libmethods_orig_src = AlleleFrequency.cc \
+AlleleFrequency.h \
+BEAGLEOutput.cc \
+BEAGLEOutput.h \
+BINOutput.cc \
+BINOutput.h \
+BoxCoxTransform.cpp \
+BoxCoxTransform.h \
+CaConChisq.cc \
+CaConChisq.h \
+cdflib.h \
+ChiSquareAllelic.cpp \
+ChiSquareAllelic.h \
+ChiSquareArmitage.cpp \
+ChiSquareArmitage.h \
+ChiSquare.cpp \
+ChiSquare.h \
+ClusterMissing.cc \
+CMH.cpp \
+CMH.h \
+ComboGenerator.cpp \
+ComboGenerator.h \
+Concordance.cc \
+Concordance.h \
+conditional_lr.cpp \
+conditional_lr.h \
+CondLogRegression.cpp \
+CondLogRegression.h \
+ContingencyTable.cpp \
+ContingencyTable.h \
+Covariate.cpp \
+Covariate.h \
+CovTrait.cpp \
+CovTrait.h \
+DataSet.cpp \
+DataSet.h \
+dcdflib.cpp \
+Deletions.cc \
+Deletions.h \
+EigenstratOutput.cc \
+EigenstratOutput.h \
+Epistasis.cc \
+Epistasis.h \
+Family.cc \
+Family.h \
+FBATOutput.cc \
+FBATOutput.h \
+FilterProcess.cpp \
+FilterProcess.h \
+filters/AlleleFrequencyFilter.cpp \
+filters/AlleleFrequencyFilter.h \
+filters/Analysis.cpp \
+filters/Analysis.h \
+filters/AnalysisSet.cpp \
+filters/AnalysisSet.h \
+filters/ArmitageFilter.cpp \
+filters/ArmitageFilter.h \
+filters/BinSnpFileReader.cpp \
+filters/BinSnpFileReader.h \
+filters/BioBinaryReader.cpp \
+filters/BioBinaryReader.h \
+filters/BioFilter.cpp \
+filters/BioFilter.h \
+filters/ChiSquareFilter.cpp \
+filters/ChiSquareFilter.h \
+filters/ConditionalLRFilter.cpp \
+filters/ConditionalLRFilter.h \
+filters/ConfigFileReader.cpp \
+filters/ConfigFileReader.h \
+filters/ConfigReader.h \
+filters/ContingencyFilter.cpp \
+filters/ContingencyFilter.h \
+filters/DataDefinitions.h \
+filters/DataExcept.cpp \
+filters/DataExcept.h \
+filters/FileResults.cpp \
+filters/FileResults.h \
+filters/Filter.cpp \
+filters/FilterExcept.cpp \
+filters/FilterExcept.h \
+filters/FilterFactory.cpp \
+filters/FilterFactory.h \
+filters/Filter.h \
+filters/Filters.h \
+filters/LikelihoodRatioFilter.cpp \
+filters/LikelihoodRatioFilter.h \
+filters/LogInfo.cpp \
+filters/LogInfo.h \
+filters/LogRegFilter.cpp \
+filters/LogRegFilter.h \
+filters/MarkerGenoFilter.cpp \
+filters/MarkerGenoFilter.h \
+filters/MaxScoreFilter.cpp \
+filters/MaxScoreFilter.h \
+filters/MDRFilter.cpp \
+filters/MDRFilter.h \
+filters/MDRPDTFilter.cpp \
+filters/MDRPDTFilter.h \
+filters/NMIFilter.cpp \
+filters/NMIFilter.h \
+filters/OddsRatioFilter.cpp \
+filters/OddsRatioFilter.h \
+filters/OutputWriterFactory.cpp \
+filters/OutputWriterFactory.h \
+filters/PermScoreFilter.cpp \
+filters/PermScoreFilter.h \
+filters/Permutation.cpp \
+filters/Permutation.h \
+filters/PlatoDefinitions.h \
+filters/PlatoExcept.h \
+filters/ResultSet.h \
+filters/ResultsManager.cpp \
+filters/ResultsManager.h \
+filters/SnpFileReader.h \
+filters/Stringmanip.cpp \
+filters/Stringmanip.h \
+filters/TextSnpFileReader.cpp \
+filters/TextSnpFileReader.h \
+filters/UncertaintyCoeffFilter.cpp \
+filters/UncertaintyCoeffFilter.h \
+FisherExact.cpp \
+FisherExact.h \
+FlatIndex.cpp \
+FlatIndex.h \
+Fst.cc \
+Fst.h \
+GenderCheck.cc \
+GenderCheck.h \
+General.cc \
+General.h \
+Globals.h \
+GRROutput.cc \
+GRROutput.h \
+Helpers.cc \
+Helpers.h \
+Homozygous.cc \
+Homozygous.h \
+HWEquilibrium.cc \
+HWEquilibrium.h \
+IBS.cc \
+IBS.h \
+ImputeOutput.cc \
+ImputeOutput.h \
+InputFilter.cpp \
+InputFilter.h \
+ipmpar.cpp \
+Kinship.cc \
+Kinship.h \
+LAPISOutput.cc \
+LAPISOutput.h \
+LD.cc \
+LD.h \
+LikelihoodRatio.cpp \
+LikelihoodRatio.h \
+LinearRegression.cpp \
+LinearRegression.h \
+LogisticRegression.cpp \
+LogisticRegression.h \
+LogTransform.cpp \
+LogTransform.h \
+Marker.cc \
+MarkerGenoEff.cc \
+MarkerGenoEff.h \
+Marker.h \
+max.h \
+MDR.cpp \
+MDR.h \
+MDROutput.cc \
+MDROutput.h \
+MDRPDT.cpp \
+MDRPDT.h \
+mdrpdt/evaluationmethod.cpp \
+mdrpdt/evaluationmethod.h \
+mdrpdt/familyrepository.cpp \
+mdrpdt/familyrepository.h \
+mdrpdt/foldproduction.cpp \
+mdrpdt/foldproduction.h \
+mdrpdt/foldstatistic.cpp \
+mdrpdt/foldstatistic.h \
+mdrpdt/genotypecounter.h \
+mdrpdt/genotyperepository.cpp \
+mdrpdt/genotyperepository.h \
+mdrpdt/individual.cpp \
+mdrpdt/individual.h \
+mdrpdt/lineparser.cpp \
+mdrpdt/lineparser.h \
+mdrpdt/matchedoddsratio.cpp \
+mdrpdt/matchedoddsratio.h \
+mdrpdt/MDRPDTRepository.cpp \
+mdrpdt/MDRPDTRepository.h \
+mdrpdt/mersenne.cpp \
+mdrpdt/orderreport.cpp \
+mdrpdt/orderreport.h \
+mdrpdt/pdtmodel.cpp \
+mdrpdt/pdtmodel.h \
+mdrpdt/pedigree.cpp \
+mdrpdt/pedigree.h \
+mdrpdt/ptestdistribution.cpp \
+mdrpdt/ptestdistribution.h \
+mdrpdt/randomc.h \
+mdrpdt/random.cpp \
+mdrpdt/random.h \
+mdrpdt/rbtree.h \
+mdrpdt/sibship.cpp \
+mdrpdt/sibship.h \
+mdrpdt/strings.cpp \
+mdrpdt/strings.h \
+mdrpdt/tfinalreport.cpp \
+mdrpdt/tfinalreport.h \
+mdrpdt/tstatistic.cpp \
+mdrpdt/tstatistic.h \
+mdrpdt/types.h \
+mdrpdt/utility.h \
+MendelianErrors.cc \
+MendelianErrors.h \
+MitoCheck.cc \
+MitoCheck.h \
+Model.cpp \
+Model.h \
+MultComparison.cpp \
+MultComparison.h \
+NMI.cpp \
+NMI.h \
+OddsRatio.cpp \
+OddsRatio.h \
+Options.cc \
+Options.h \
+PDT2Output.cc \
+PDT2Output.h \
+PEDOutput.cc \
+PEDOutput.h \
+PHASEOutput.cc \
+PHASEOutput.h \
+PowerMarkerOutput.cc \
+PowerMarkerOutput.h \
+QTDTOutput.cc \
+QTDTOutput.h \
+RunTDT.cc \
+RunTDT.h \
+Sample.cc \
+SampleGenoEff.cc \
+SampleGenoEff.h \
+Sample.h \
+SquareRootTransform.cpp \
+SquareRootTransform.h \
+StepOptions.cc \
+StepOptions.h \
+STRUCTOutput.cc \
+STRUCTOutput.h \
+SuperlinkOutput.cc \
+SuperlinkOutput.h \
+TPEDOutput.cpp \
+TPEDOutput.h \
+Trait.cpp \
+Trait.h \
+UncertaintyCoefficient.cpp \
+UncertaintyCoefficient.h \
+MethodException.h \
+ClusterMissing.h \
+filters/FilterDefinitions.h \
+filters/OutputWriter.h \
+mdrpdt/exception.h \
+LinRegression.h \
+LinRegression.cpp \
+Regression.h \
+Interactions.cpp \
+Interactions.h
+
+all: all-am
+
+.SUFFIXES:
+.SUFFIXES: .cpp .lo .o .obj
+$(srcdir)/Makefile.in: $(srcdir)/Makefile.am $(am__configure_deps)
+ @for dep in $?; do \
+ case '$(am__configure_deps)' in \
+ *$$dep*) \
+ ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+ && { if test -f $@; then exit 0; else break; fi; }; \
+ exit 1;; \
+ esac; \
+ done; \
+ echo ' cd $(top_srcdir) && $(AUTOMAKE) --foreign method_lib/Makefile'; \
+ $(am__cd) $(top_srcdir) && \
+ $(AUTOMAKE) --foreign method_lib/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+ @case '$?' in \
+ *config.status*) \
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+ *) \
+ echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+ cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+ esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure: $(am__configure_deps)
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4): $(am__aclocal_m4_deps)
+ cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(am__aclocal_m4_deps):
+
+clean-noinstLTLIBRARIES:
+ -test -z "$(noinst_LTLIBRARIES)" || rm -f $(noinst_LTLIBRARIES)
+ @list='$(noinst_LTLIBRARIES)'; for p in $$list; do \
+ dir="`echo $$p | sed -e 's|/[^/]*$$||'`"; \
+ test "$$dir" != "$$p" || dir=.; \
+ echo "rm -f \"$${dir}/so_locations\""; \
+ rm -f "$${dir}/so_locations"; \
+ done
+libmethods.la: $(libmethods_la_OBJECTS) $(libmethods_la_DEPENDENCIES)
+ $(CXXLINK) $(libmethods_la_OBJECTS) $(libmethods_la_LIBADD) $(LIBS)
+
+mostlyclean-compile:
+ -rm -f *.$(OBJEXT)
+
+distclean-compile:
+ -rm -f *.tab.c
+
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/BiallelicSample.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Correction.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/DataLoader.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/DataSet.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Encoding.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Family.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/GSLUtils.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/ICompressedFile.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/InputManager.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Logger.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/MPIUtils.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Marker.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Missing.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/OutputPLINK.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/PhasedBiallelicSample.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/PhasedPolyallelicSample.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/PolyallelicSample.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Regression.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/Sample.Plo at am__quote@
+ at AMDEP_TRUE@@am__include@ @am__quote at ./$(DEPDIR)/ThreadPool.Plo at am__quote@
+
+.cpp.o:
+ at am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ $<
+
+.cpp.obj:
+ at am__fastdepCXX_TRUE@ $(CXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ `$(CYGPATH_W) '$<'`
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Po
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=no @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(CXXCOMPILE) -c -o $@ `$(CYGPATH_W) '$<'`
+
+.cpp.lo:
+ at am__fastdepCXX_TRUE@ $(LTCXXCOMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/$*.Tpo $(DEPDIR)/$*.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='$<' object='$@' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LTCXXCOMPILE) -c -o $@ $<
+
+BiallelicSample.lo: data/BiallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT BiallelicSample.lo -MD -MP -MF $(DEPDIR)/BiallelicSample.Tpo -c -o BiallelicSample.lo `test -f 'data/BiallelicSample.cpp' || echo '$(srcdir)/'`data/BiallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/BiallelicSample.Tpo $(DEPDIR)/BiallelicSample.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/BiallelicSample.cpp' object='BiallelicSample.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o BiallelicSample.lo `test -f 'data/BiallelicSample.cpp' || echo '$(srcdir)/'`data/BiallelicSample.cpp
+
+DataSet.lo: data/DataSet.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT DataSet.lo -MD -MP -MF $(DEPDIR)/DataSet.Tpo -c -o DataSet.lo `test -f 'data/DataSet.cpp' || echo '$(srcdir)/'`data/DataSet.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/DataSet.Tpo $(DEPDIR)/DataSet.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/DataSet.cpp' object='DataSet.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o DataSet.lo `test -f 'data/DataSet.cpp' || echo '$(srcdir)/'`data/DataSet.cpp
+
+Family.lo: data/Family.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Family.lo -MD -MP -MF $(DEPDIR)/Family.Tpo -c -o Family.lo `test -f 'data/Family.cpp' || echo '$(srcdir)/'`data/Family.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Family.Tpo $(DEPDIR)/Family.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/Family.cpp' object='Family.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Family.lo `test -f 'data/Family.cpp' || echo '$(srcdir)/'`data/Family.cpp
+
+Marker.lo: data/Marker.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Marker.lo -MD -MP -MF $(DEPDIR)/Marker.Tpo -c -o Marker.lo `test -f 'data/Marker.cpp' || echo '$(srcdir)/'`data/Marker.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Marker.Tpo $(DEPDIR)/Marker.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/Marker.cpp' object='Marker.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Marker.lo `test -f 'data/Marker.cpp' || echo '$(srcdir)/'`data/Marker.cpp
+
+PhasedBiallelicSample.lo: data/PhasedBiallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT PhasedBiallelicSample.lo -MD -MP -MF $(DEPDIR)/PhasedBiallelicSample.Tpo -c -o PhasedBiallelicSample.lo `test -f 'data/PhasedBiallelicSample.cpp' || echo '$(srcdir)/'`data/PhasedBiallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/PhasedBiallelicSample.Tpo $(DEPDIR)/PhasedBiallelicSample.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/PhasedBiallelicSample.cpp' object='PhasedBiallelicSample.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o PhasedBiallelicSample.lo `test -f 'data/PhasedBiallelicSample.cpp' || echo '$(srcdir)/'`data/PhasedBiallelicSample.cpp
+
+PhasedPolyallelicSample.lo: data/PhasedPolyallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT PhasedPolyallelicSample.lo -MD -MP -MF $(DEPDIR)/PhasedPolyallelicSample.Tpo -c -o PhasedPolyallelicSample.lo `test -f 'data/PhasedPolyallelicSample.cpp' || echo '$(srcdir)/'`data/PhasedPolyallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/PhasedPolyallelicSample.Tpo $(DEPDIR)/PhasedPolyallelicSample.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/PhasedPolyallelicSample.cpp' object='PhasedPolyallelicSample.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o PhasedPolyallelicSample.lo `test -f 'data/PhasedPolyallelicSample.cpp' || echo '$(srcdir)/'`data/PhasedPolyallelicSample.cpp
+
+PolyallelicSample.lo: data/PolyallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT PolyallelicSample.lo -MD -MP -MF $(DEPDIR)/PolyallelicSample.Tpo -c -o PolyallelicSample.lo `test -f 'data/PolyallelicSample.cpp' || echo '$(srcdir)/'`data/PolyallelicSample.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/PolyallelicSample.Tpo $(DEPDIR)/PolyallelicSample.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/PolyallelicSample.cpp' object='PolyallelicSample.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o PolyallelicSample.lo `test -f 'data/PolyallelicSample.cpp' || echo '$(srcdir)/'`data/PolyallelicSample.cpp
+
+Sample.lo: data/Sample.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Sample.lo -MD -MP -MF $(DEPDIR)/Sample.Tpo -c -o Sample.lo `test -f 'data/Sample.cpp' || echo '$(srcdir)/'`data/Sample.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Sample.Tpo $(DEPDIR)/Sample.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='data/Sample.cpp' object='Sample.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Sample.lo `test -f 'data/Sample.cpp' || echo '$(srcdir)/'`data/Sample.cpp
+
+DataLoader.lo: util/DataLoader.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT DataLoader.lo -MD -MP -MF $(DEPDIR)/DataLoader.Tpo -c -o DataLoader.lo `test -f 'util/DataLoader.cpp' || echo '$(srcdir)/'`util/DataLoader.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/DataLoader.Tpo $(DEPDIR)/DataLoader.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/DataLoader.cpp' object='DataLoader.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o DataLoader.lo `test -f 'util/DataLoader.cpp' || echo '$(srcdir)/'`util/DataLoader.cpp
+
+OutputPLINK.lo: util/OutputPLINK.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT OutputPLINK.lo -MD -MP -MF $(DEPDIR)/OutputPLINK.Tpo -c -o OutputPLINK.lo `test -f 'util/OutputPLINK.cpp' || echo '$(srcdir)/'`util/OutputPLINK.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/OutputPLINK.Tpo $(DEPDIR)/OutputPLINK.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/OutputPLINK.cpp' object='OutputPLINK.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o OutputPLINK.lo `test -f 'util/OutputPLINK.cpp' || echo '$(srcdir)/'`util/OutputPLINK.cpp
+
+Logger.lo: util/Logger.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Logger.lo -MD -MP -MF $(DEPDIR)/Logger.Tpo -c -o Logger.lo `test -f 'util/Logger.cpp' || echo '$(srcdir)/'`util/Logger.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Logger.Tpo $(DEPDIR)/Logger.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/Logger.cpp' object='Logger.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Logger.lo `test -f 'util/Logger.cpp' || echo '$(srcdir)/'`util/Logger.cpp
+
+InputManager.lo: util/InputManager.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT InputManager.lo -MD -MP -MF $(DEPDIR)/InputManager.Tpo -c -o InputManager.lo `test -f 'util/InputManager.cpp' || echo '$(srcdir)/'`util/InputManager.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/InputManager.Tpo $(DEPDIR)/InputManager.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/InputManager.cpp' object='InputManager.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o InputManager.lo `test -f 'util/InputManager.cpp' || echo '$(srcdir)/'`util/InputManager.cpp
+
+Missing.lo: util/Missing.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Missing.lo -MD -MP -MF $(DEPDIR)/Missing.Tpo -c -o Missing.lo `test -f 'util/Missing.cpp' || echo '$(srcdir)/'`util/Missing.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Missing.Tpo $(DEPDIR)/Missing.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/Missing.cpp' object='Missing.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Missing.lo `test -f 'util/Missing.cpp' || echo '$(srcdir)/'`util/Missing.cpp
+
+GSLUtils.lo: util/GSLUtils.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT GSLUtils.lo -MD -MP -MF $(DEPDIR)/GSLUtils.Tpo -c -o GSLUtils.lo `test -f 'util/GSLUtils.cpp' || echo '$(srcdir)/'`util/GSLUtils.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/GSLUtils.Tpo $(DEPDIR)/GSLUtils.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/GSLUtils.cpp' object='GSLUtils.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o GSLUtils.lo `test -f 'util/GSLUtils.cpp' || echo '$(srcdir)/'`util/GSLUtils.cpp
+
+ICompressedFile.lo: util/ICompressedFile.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT ICompressedFile.lo -MD -MP -MF $(DEPDIR)/ICompressedFile.Tpo -c -o ICompressedFile.lo `test -f 'util/ICompressedFile.cpp' || echo '$(srcdir)/'`util/ICompressedFile.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/ICompressedFile.Tpo $(DEPDIR)/ICompressedFile.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/ICompressedFile.cpp' object='ICompressedFile.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o ICompressedFile.lo `test -f 'util/ICompressedFile.cpp' || echo '$(srcdir)/'`util/ICompressedFile.cpp
+
+MPIUtils.lo: util/MPIUtils.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT MPIUtils.lo -MD -MP -MF $(DEPDIR)/MPIUtils.Tpo -c -o MPIUtils.lo `test -f 'util/MPIUtils.cpp' || echo '$(srcdir)/'`util/MPIUtils.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/MPIUtils.Tpo $(DEPDIR)/MPIUtils.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/MPIUtils.cpp' object='MPIUtils.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o MPIUtils.lo `test -f 'util/MPIUtils.cpp' || echo '$(srcdir)/'`util/MPIUtils.cpp
+
+ThreadPool.lo: util/ThreadPool.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT ThreadPool.lo -MD -MP -MF $(DEPDIR)/ThreadPool.Tpo -c -o ThreadPool.lo `test -f 'util/ThreadPool.cpp' || echo '$(srcdir)/'`util/ThreadPool.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/ThreadPool.Tpo $(DEPDIR)/ThreadPool.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='util/ThreadPool.cpp' object='ThreadPool.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o ThreadPool.lo `test -f 'util/ThreadPool.cpp' || echo '$(srcdir)/'`util/ThreadPool.cpp
+
+Correction.lo: analysis/Correction.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Correction.lo -MD -MP -MF $(DEPDIR)/Correction.Tpo -c -o Correction.lo `test -f 'analysis/Correction.cpp' || echo '$(srcdir)/'`analysis/Correction.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Correction.Tpo $(DEPDIR)/Correction.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='analysis/Correction.cpp' object='Correction.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Correction.lo `test -f 'analysis/Correction.cpp' || echo '$(srcdir)/'`analysis/Correction.cpp
+
+Encoding.lo: analysis/Encoding.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Encoding.lo -MD -MP -MF $(DEPDIR)/Encoding.Tpo -c -o Encoding.lo `test -f 'analysis/Encoding.cpp' || echo '$(srcdir)/'`analysis/Encoding.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Encoding.Tpo $(DEPDIR)/Encoding.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='analysis/Encoding.cpp' object='Encoding.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Encoding.lo `test -f 'analysis/Encoding.cpp' || echo '$(srcdir)/'`analysis/Encoding.cpp
+
+Regression.lo: analysis/Regression.cpp
+ at am__fastdepCXX_TRUE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -MT Regression.lo -MD -MP -MF $(DEPDIR)/Regression.Tpo -c -o Regression.lo `test -f 'analysis/Regression.cpp' || echo '$(srcdir)/'`analysis/Regression.cpp
+ at am__fastdepCXX_TRUE@ $(am__mv) $(DEPDIR)/Regression.Tpo $(DEPDIR)/Regression.Plo
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ source='analysis/Regression.cpp' object='Regression.lo' libtool=yes @AMDEPBACKSLASH@
+ at AMDEP_TRUE@@am__fastdepCXX_FALSE@ DEPDIR=$(DEPDIR) $(CXXDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+ at am__fastdepCXX_FALSE@ $(LIBTOOL) --tag=CXX $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=compile $(CXX) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CXXFLAGS) $(CXXFLAGS) -c -o Regression.lo `test -f 'analysis/Regression.cpp' || echo '$(srcdir)/'`analysis/Regression.cpp
+
+mostlyclean-libtool:
+ -rm -f *.lo
+
+clean-libtool:
+ -rm -rf .libs _libs
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+ unique=`for i in $$list; do \
+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+ done | \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ mkid -fID $$unique
+tags: TAGS
+
+TAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
+ $(TAGS_FILES) $(LISP)
+ set x; \
+ here=`pwd`; \
+ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+ unique=`for i in $$list; do \
+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+ done | \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ shift; \
+ if test -z "$(ETAGS_ARGS)$$*$$unique"; then :; else \
+ test -n "$$unique" || unique=$$empty_fix; \
+ if test $$# -gt 0; then \
+ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+ "$$@" $$unique; \
+ else \
+ $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+ $$unique; \
+ fi; \
+ fi
+ctags: CTAGS
+CTAGS: $(HEADERS) $(SOURCES) $(TAGS_DEPENDENCIES) \
+ $(TAGS_FILES) $(LISP)
+ list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+ unique=`for i in $$list; do \
+ if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+ done | \
+ $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+ END { if (nonempty) { for (i in files) print i; }; }'`; \
+ test -z "$(CTAGS_ARGS)$$unique" \
+ || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+ $$unique
+
+GTAGS:
+ here=`$(am__cd) $(top_builddir) && pwd` \
+ && $(am__cd) $(top_srcdir) \
+ && gtags -i $(GTAGS_ARGS) "$$here"
+
+distclean-tags:
+ -rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+ @srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+ list='$(DISTFILES)'; \
+ dist_files=`for file in $$list; do echo $$file; done | \
+ sed -e "s|^$$srcdirstrip/||;t" \
+ -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+ case $$dist_files in \
+ */*) $(MKDIR_P) `echo "$$dist_files" | \
+ sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+ sort -u` ;; \
+ esac; \
+ for file in $$dist_files; do \
+ if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+ if test -d $$d/$$file; then \
+ dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+ if test -d "$(distdir)/$$file"; then \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+ fi; \
+ if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+ cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
+ find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
+ fi; \
+ cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
+ else \
+ test -f "$(distdir)/$$file" \
+ || cp -p $$d/$$file "$(distdir)/$$file" \
+ || exit 1; \
+ fi; \
+ done
+check-am: all-am
+check: check-am
+all-am: Makefile $(LTLIBRARIES)
+installdirs:
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+ @$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+ $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+ install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+ `test -z '$(STRIP)' || \
+ echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+ -test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+ -test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)
+
+maintainer-clean-generic:
+ @echo "This command is intended for maintainers to use"
+ @echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic clean-libtool clean-noinstLTLIBRARIES \
+ mostlyclean-am
+
+distclean: distclean-am
+ -rm -rf ./$(DEPDIR)
+ -rm -f Makefile
+distclean-am: clean-am distclean-compile distclean-generic \
+ distclean-tags
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+html-am:
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-dvi-am:
+
+install-exec-am:
+
+install-html: install-html-am
+
+install-html-am:
+
+install-info: install-info-am
+
+install-info-am:
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-pdf-am:
+
+install-ps: install-ps-am
+
+install-ps-am:
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+ -rm -rf ./$(DEPDIR)
+ -rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-compile mostlyclean-generic \
+ mostlyclean-libtool
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am:
+
+.MAKE: install-am install-strip
+
+.PHONY: CTAGS GTAGS all all-am check check-am clean clean-generic \
+ clean-libtool clean-noinstLTLIBRARIES ctags distclean \
+ distclean-compile distclean-generic distclean-libtool \
+ distclean-tags distdir dvi dvi-am html html-am info info-am \
+ install install-am install-data install-data-am install-dvi \
+ install-dvi-am install-exec install-exec-am install-html \
+ install-html-am install-info install-info-am install-man \
+ install-pdf install-pdf-am install-ps install-ps-am \
+ install-strip installcheck installcheck-am installdirs \
+ maintainer-clean maintainer-clean-generic mostlyclean \
+ mostlyclean-compile mostlyclean-generic mostlyclean-libtool \
+ pdf pdf-am ps ps-am tags uninstall uninstall-am
+
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
diff --git a/method_lib/analysis/Correction.cpp b/method_lib/analysis/Correction.cpp
new file mode 100644
index 0000000..d3f63d2
--- /dev/null
+++ b/method_lib/analysis/Correction.cpp
@@ -0,0 +1,117 @@
+#include "Correction.h"
+
+#include <algorithm>
+#include <string>
+#include <sstream>
+
+#include <boost/program_options.hpp>
+
+using std::map;
+using std::vector;
+using std::sort;
+using std::stringstream;
+
+using boost::program_options::validation_error;
+
+namespace PLATO{
+namespace Analysis{
+
+CorrectionModel::CorrectionModel(const std::string& s){
+ std::istringstream ss(s);
+ ss >> (*this);
+}
+
+CorrectionModel::CorrectionModel(const char * s){
+ std::istringstream ss(s);
+ ss >> (*this);
+}
+
+Correction* Correction::getCorrectionMethod(const CorrectionModel& c){
+ static Correction* bonf = new BonferroniCorrection();
+ static Correction* fdr = new FDRCorrection();
+
+ switch((int) c){
+ case BONFERRONI:
+ return bonf;
+ case FDR:
+ return fdr;
+ default:
+ return 0;
+ }
+}
+
+std::string Correction::listCorrectionMethods(){
+
+ stringstream ss;
+ ss << CorrectionModel(BONFERRONI) << "," << CorrectionModel(FDR);
+
+ return ss.str();
+}
+
+void Correction::initOutVec(const vector<float>& pval_in, vector<float>& pval_out, vector<size_t>& idx_out){
+ pval_out.clear();
+ pval_out.reserve(pval_in.size());
+ pval_out.insert(pval_out.end(), pval_in.begin(), pval_in.end());
+
+ idx_out.clear();
+ idx_out.reserve(pval_in.size());
+ for(unsigned int i =0; i < pval_in.size(); i++){
+ idx_out.push_back(i);
+ }
+
+ // Now, sort the index vector based on the values in the input vector
+ sort(idx_out.begin(), idx_out.end(), idx_sorter<float>(pval_in));
+}
+
+void BonferroniCorrection::correct(const vector<float>& pval_in, vector<float>& pval_out){
+ vector<size_t> idx;
+ initOutVec(pval_in, pval_out, idx);
+ for(unsigned int i=0; i < pval_out.size(); i++){
+ pval_out[idx[i]] = std::min(pval_out[idx[i]] * pval_out.size(), static_cast<float>(1));
+ }
+}
+
+void FDRCorrection::correct(const vector<float>& pval_in, vector<float>& pval_out){
+ vector<size_t> idx;
+ initOutVec(pval_in, pval_out, idx);
+ for(int i=(pval_out.size()-2); i >= 0; --i){
+ pval_out[idx[i]] = std::min(pval_out[idx[i+1]], pval_out[idx[i]] * pval_out.size() / (i+1));
+ }
+}
+
+}
+}
+
+namespace std{
+
+istream& operator>>(istream& in,
+ PLATO::Analysis::CorrectionModel& model_out) {
+ string token;
+ in >> token;
+ if (token.size() > 0) {
+ char s = token[0];
+ if (s == 'b' || s == 'B') {
+ model_out = PLATO::Analysis::Correction::BONFERRONI;
+ } else if (s == 'f' || s == 'F') {
+ model_out = PLATO::Analysis::Correction::FDR;
+ } else {
+ throw validation_error(validation_error::invalid_option_value);
+ }
+ } else {
+ throw validation_error(validation_error::invalid_option_value);
+ }
+ // else throw boost::program_options::validation_error("Invalid unit");
+ return in;
+}
+ostream& operator<<(ostream& o, const PLATO::Analysis::CorrectionModel& m){
+ switch(m){
+ case PLATO::Analysis::Correction::BONFERRONI:
+ return o << "Bonferroni";
+ case PLATO::Analysis::Correction::FDR:
+ return o << "FDR";
+ default:
+ return o << "unknown";
+ }
+}
+
+}
diff --git a/method_lib/analysis/Correction.h b/method_lib/analysis/Correction.h
new file mode 100644
index 0000000..6d98887
--- /dev/null
+++ b/method_lib/analysis/Correction.h
@@ -0,0 +1,89 @@
+#ifndef ANALYSIS_CORRECTION_H
+#define ANALYSIS_CORRECTION_H
+
+#include <vector>
+#include <iostream>
+
+namespace PLATO{
+namespace Analysis{
+
+class CorrectionModel;
+
+class Correction {
+public:
+ enum correction_ENUM { BONFERRONI, FDR };
+
+private:
+
+ template<class T>
+ class idx_sorter{
+ public:
+ idx_sorter(const std::vector<T>& v) : _v(v) {}
+
+ bool operator() (size_t i, size_t j){
+ return _v[i] < _v[j];
+ }
+
+ private:
+ const std::vector<T>& _v;
+ };
+
+protected:
+ Correction(){}
+
+public:
+ virtual ~Correction(){};
+ virtual void correct(const std::vector<float>& pval_in, std::vector<float>& pval_out) = 0;
+
+ static Correction* getCorrectionMethod(const CorrectionModel& c);
+
+ static std::string listCorrectionMethods();
+
+protected:
+ void initOutVec(const std::vector<float>& pval_in, std::vector<float>& pval_out, std::vector<size_t>& idx_out);
+
+};
+
+class CorrectionModel{
+public:
+ CorrectionModel(const std::string& s);
+ CorrectionModel(const char* s);
+ CorrectionModel() : _data(Correction::BONFERRONI) {}
+ CorrectionModel(Correction::correction_ENUM c) : _data(c) {}
+
+ operator int() const{return _data;}
+
+// bool operator<(const CorrectionModel& o) {return static_cast<int>(_data) < static_cast<int>(o._data);}
+
+private:
+ Correction::correction_ENUM _data;
+};
+
+
+class BonferroniCorrection : public Correction {
+// default ctor fine!
+public:
+ virtual ~BonferroniCorrection() {}
+
+ virtual void correct(const std::vector<float>& pval_in, std::vector<float>& pval_out);
+
+};
+
+class FDRCorrection : public Correction {
+// default ctor fine!
+public:
+ virtual ~FDRCorrection() {}
+
+ virtual void correct(const std::vector<float>& pval_in, std::vector<float>& pval_out);
+
+};
+
+}
+}
+
+namespace std{
+istream& operator>>(istream& in, PLATO::Analysis::CorrectionModel& model_out);
+ostream& operator<<(ostream& o, const PLATO::Analysis::CorrectionModel& m);
+}
+
+#endif
diff --git a/method_lib/analysis/Encoding.cpp b/method_lib/analysis/Encoding.cpp
new file mode 100644
index 0000000..170807a
--- /dev/null
+++ b/method_lib/analysis/Encoding.cpp
@@ -0,0 +1,79 @@
+#include "Encoding.h"
+
+#include <boost/program_options.hpp>
+#include <sstream>
+
+using boost::program_options::validation_error;
+using std::istream;
+using std::ostream;
+using std::string;
+
+namespace PLATO{
+namespace Analysis{
+
+EncodingModel::EncodingModel(const std::string& s){
+ std::istringstream ss(s);
+ ss >> (*this);
+}
+
+EncodingModel::EncodingModel(const char * s){
+ std::istringstream ss(s);
+ ss >> (*this);
+}
+
+int EncodingModel::operator()(unsigned int add) const{
+ switch(_data){
+ case Encoding::DOMINANT:
+ return add > 0;
+ case Encoding::RECESSIVE:
+ return add == 2;
+ default:
+ return add;
+ }
+}
+
+istream& operator>>(istream& in,
+ PLATO::Analysis::EncodingModel& model_out) {
+ string token;
+ in >> token;
+ if (token.size() > 0) {
+ char s = token[0];
+ if (s == 'a' || s == 'A') {
+ model_out = PLATO::Analysis::Encoding::ADDITIVE;
+ } else if (s == 'd' || s == 'D') {
+ model_out = PLATO::Analysis::Encoding::DOMINANT;
+ } else if (s == 'r' || s == 'R') {
+ model_out = PLATO::Analysis::Encoding::RECESSIVE;
+ } else if (s == 'w' || s == 'W') {
+ model_out = PLATO::Analysis::Encoding::WEIGHTED;
+ } else if (s == 'c' || s == 'C') {
+ model_out = PLATO::Analysis::Encoding::CODOMINANT;
+ } else {
+ throw validation_error(validation_error::invalid_option_value);
+ }
+ } else {
+ throw validation_error(validation_error::invalid_option_value);
+ }
+ // else throw boost::program_options::validation_error("Invalid unit");
+ return in;
+}
+
+ostream& operator<<(ostream& o, const PLATO::Analysis::EncodingModel& m){
+ switch(m){
+ case PLATO::Analysis::Encoding::ADDITIVE:
+ return o << "additive";
+ case PLATO::Analysis::Encoding::DOMINANT:
+ return o << "dominant";
+ case PLATO::Analysis::Encoding::RECESSIVE:
+ return o << "recessive";
+ case PLATO::Analysis::Encoding::WEIGHTED:
+ return o << "weighted";
+ case PLATO::Analysis::Encoding::CODOMINANT:
+ return o << "codominant";
+ default:
+ return o << "unknown";
+ }
+}
+
+}
+}
diff --git a/method_lib/analysis/Encoding.h b/method_lib/analysis/Encoding.h
new file mode 100644
index 0000000..b43df2c
--- /dev/null
+++ b/method_lib/analysis/Encoding.h
@@ -0,0 +1,45 @@
+#ifndef ANALYSIS_ENCODING_H
+#define ANALYSIS_ENCODING_H
+
+#include <iostream>
+#include <string>
+#include <boost/archive/binary_iarchive.hpp>
+#include <boost/archive/binary_oarchive.hpp>
+
+namespace PLATO{
+namespace Analysis{
+
+class Encoding{
+public:
+ enum encoding_ENUM { ADDITIVE, DOMINANT, RECESSIVE, WEIGHTED, CODOMINANT};
+};
+
+class EncodingModel{
+public:
+ friend class boost::serialization::access;
+
+ EncodingModel(const char* s);
+ EncodingModel(const std::string& s);
+ EncodingModel() : _data(Encoding::ADDITIVE) {}
+ EncodingModel(Encoding::encoding_ENUM c) : _data(c) {}
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & _data;
+ }
+
+ operator int() const{return _data;}
+
+ int operator()(unsigned int add) const;
+
+private:
+ Encoding::encoding_ENUM _data;
+};
+
+std::istream& operator>>(std::istream& in, PLATO::Analysis::EncodingModel& model_out);
+std::ostream& operator<<(std::ostream& o, const PLATO::Analysis::EncodingModel& m);
+
+}
+}
+
+#endif
diff --git a/method_lib/analysis/Regression.cpp b/method_lib/analysis/Regression.cpp
new file mode 100644
index 0000000..86ea06d
--- /dev/null
+++ b/method_lib/analysis/Regression.cpp
@@ -0,0 +1,2884 @@
+/*
+ * Regression.cpp
+ *
+ * Created on: Jan 8, 2014
+ * Author: jrw32
+ */
+
+#include "Regression.h"
+
+#include "util/InputManager.h"
+#include "util/Logger.h"
+#include "util/MPIUtils.h"
+
+#include "data/Marker.h"
+#include "data/Sample.h"
+
+#include <algorithm>
+#include <fstream>
+#include <cmath>
+#include <cstring>
+#include <limits>
+#include <sstream>
+#include <iostream>
+#include <cstdio>
+#include <ctime>
+#include <cstdlib>
+#include <typeinfo>
+
+#include <gsl/gsl_blas.h>
+#include <gsl/gsl_vector.h>
+#include <gsl/gsl_permute_vector.h>
+
+#include <boost/iostreams/operations.hpp>
+#include <boost/algorithm/string.hpp>
+#include <boost/lexical_cast.hpp>
+#include <boost/bind.hpp>
+#include <boost/ref.hpp>
+
+#include <boost/serialization/export.hpp>
+
+
+#include "config.h"
+#ifdef HAVE_CXX_MPI
+#include <mpi.h>
+#endif
+
+using std::string;
+using std::vector;
+using std::set;
+using std::map;
+using std::numeric_limits;
+using std::stringstream;
+using std::min;
+using std::max;
+using std::ifstream;
+using std::deque;
+using std::multimap;
+using std::pair;
+using std::make_pair;
+using std::push_heap;
+using std::pop_heap;
+using std::ofstream;
+
+using PLATO::Data::DataSet;
+using PLATO::Data::Marker;
+using PLATO::Data::Sample;
+using PLATO::Utility::InputManager;
+using PLATO::Utility::Logger;
+using PLATO::Utility::MPIUtils;
+
+using boost::dynamic_bitset;
+
+namespace po=boost::program_options;
+
+// exports for polymorphic classes passed via MPI
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::ExtraData)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_data)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_marker)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_trait)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_pheno)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_query)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_extra)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_permu)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_covars)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_bcast)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_clean)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_weight)
+BOOST_CLASS_EXPORT(PLATO::Analysis::Regression::mpi_multiquery)
+
+namespace PLATO{
+
+namespace Analysis{
+
+// static data needed for MPI slaves
+std::deque<std::pair<boost::dynamic_bitset<>, float> > Regression::_marker_data;
+std::deque<std::string> Regression::_marker_desc;
+std::deque<std::string> Regression::_trait_desc;
+std::deque<std::vector<float> > Regression::_trait_data;
+std::deque<std::vector<float> > Regression::_covar_data;
+unsigned int Regression::n_const_covars = 0;
+std::deque<gsl_permutation*> Regression::_permu_data;
+std::vector<float> Regression::_curr_pheno;
+std::string Regression::_curr_pheno_name("");
+const Regression::ExtraData* Regression::_extra_data = 0;
+boost::shared_mutex Regression::_mpi_mutex;
+Utility::ThreadPool Regression::_mpi_threads;
+
+Regression::~Regression() {
+ for (unsigned int i = 0; i < results.size(); i++){
+ delete results[i];
+ }
+ results.clear();
+
+ map<const Marker*, Result*>::const_iterator mu_itr = _marker_uni_result.begin();
+ while(mu_itr != _marker_uni_result.end()){
+ delete (*mu_itr).second;
+ ++mu_itr;
+ }
+ _marker_uni_result.clear();
+
+ map<string, Result*>::const_iterator tu_itr = _trait_uni_result.begin();
+ while(tu_itr != _trait_uni_result.end()){
+ delete (*tu_itr).second;
+ ++tu_itr;
+ }
+ _trait_uni_result.clear();
+
+ for(unsigned int i=0; i<_uni_results.size(); i++){
+ delete _uni_results[i];
+ }
+
+ out_f.close();
+ if(_lowmem){
+ tmp_f.close();
+ }
+
+ if(mgp){
+ delete mgp;
+ }
+
+ if(class_data){
+ delete class_data;
+ }
+
+ for(unsigned int i=0; i<permutations.size(); i++){
+ gsl_permutation_free(permutations[i]);
+ }
+ permutations.clear();
+
+ if(wt_marker_itr){
+ delete wt_marker_itr;
+ }
+
+}
+
+po::options_description& Regression::addOptions(po::options_description& opts){
+ po::options_description model_opts("Model Generation Options");
+
+ model_opts.add_options()
+ ("models", po::value<vector<string> >(&model_files)->composing(), "List of files containing models to generate")
+ ("exclude-markers", po::bool_switch(&exclude_markers),
+ "Do not include markers in the generated models (use for EWAS)")
+ ("use-traits", po::bool_switch(&include_traits),
+ "Include the traits not used as covariates in the generated models")
+ ("pairwise", po::bool_switch(&pairwise),
+ "When auto-generating models, include two variables exhaustively")
+ ("incl-traits", po::value<vector<string> >()->composing(), "Comma-separated list of traits to include")
+ ("excl-traits", po::value<vector<string> >()->composing(), "Comma-separated list of traits to exclude")
+ ("incl-markers", po::value<vector<string> >()->composing(), "Comma-separated list of markers to include")
+ ("one-sided", po::bool_switch(&_onesided), "Generate pairwise models with one side given by the list of included markers or traits")
+ ;
+
+ opts.add(model_opts);
+
+ po::options_description regress_opts("Regression Options");
+
+ regress_opts.add_options()
+ ("interactions", po::bool_switch(&interactions), "Include interactions in the models generated")
+ ("covariates", po::value<vector<string> >()->composing(), "A list of covariates to use in the model")
+ ("const-covariates", po::value<vector<string> >()->composing(), "A list of covariates to use in the model, without permutation")
+ ("outcome", po::value<vector<string> >()->composing(), "Use a given covariate as the regression model outcome")
+ ("encoding", po::value<EncodingModel>(&encoding)->default_value("additive"), "Encoding model to use in the regression (additive, dominant, recessive, weighted, codominant)")
+ ("show-univariate", po::bool_switch(&show_uni), "Show univariate results in multivariate models")
+ ("phewas", po::bool_switch(&_phewas), "Perform a pheWAS (use all traits not included as covariates or specifically included)")
+ ("correction", po::value<vector<string> >()->composing(), ("p-value correction method(s) (" + Correction::listCorrectionMethods() + ")").c_str())
+ ("thresh", po::value<float>(&cutoff_p)->default_value(1.0f), "Threshold for printing resultant models")
+ ("output", po::value<string>(&out_fn)->default_value("output.txt"), "Name of the file to output results")
+ ("separator", po::value<string>(&sep)->default_value("\t", "<TAB>"), "Separator to use when outputting results file")
+ ("threads", po::value<unsigned int>(&n_threads)->default_value(1), "Number of threads to use in computation")
+ ("lowmem", po::bool_switch(&_lowmem), "Reduce the memory footprint (at a potential performance penalty)")
+ ;
+
+ opts.add(regress_opts);
+
+ po::options_description permu_opts("Permutation Options");
+ permu_opts.add_options()
+ ("permutations", po::value<unsigned int>(&n_perms)->default_value(0), "Number of permutations to use in permutation testing (disabled by default - set to 0 to disable permutation)")
+ ("permu-seed", po::value<unsigned long int>(&permu_seed), "Seed for the RNG for generating permutations")
+ ("permu-thresh", po::value<float>(&permu_sig)->default_value(0.05, "0.05"), "Significance threshold below which to print all permuted models")
+ ("permu-detail-fn", po::value<string>(&permu_detail_fn)->default_value("permutation-detail.txt"), "File to print detailed results for significant permutation results")
+ ("permu-pval-fn", po::value<string>(&permu_pval_fn)->default_value("permutation-pval.txt"), "File to print p-values for all permuted results")
+ ("permu-run-full", po::bool_switch(&full_permu), "Run complete models for pemuted models")
+ ;
+
+ opts.add(permu_opts);
+
+
+ return opts;
+}
+
+void Regression::printVarHeader(const string& var_name, std::ofstream& of) const{
+ of << var_name << "_Pval" << sep
+ << var_name << "_beta" << sep
+ << var_name << "_SE" << sep;
+}
+
+void Regression::printMarkerHeader(const string& var_name, std::ofstream& of){
+ if(encoding == Encoding::CODOMINANT){
+ printVarHeader(var_name + "_Het", of);
+ printVarHeader(var_name + "_Hom", of);
+ }else{
+ printVarHeader(var_name, of);
+ }
+}
+
+void Regression::parseOptions(const boost::program_options::variables_map& vm){
+ if(vm.count("correction")){
+ InputManager::parseInput(vm["correction"].as<vector<string> >(), corr_methods);
+ }
+
+ if(vm.count("covariates")){
+ InputManager::parseInput(vm["covariates"].as<vector<string> >(), covar_names);
+ }
+
+ if(vm.count("const-covariates")){
+ InputManager::parseInput(vm["const-covariates"].as<vector<string> >(), const_covar_names);
+ }
+
+ if(vm.count("incl-traits")){
+ InputManager::parseInput(vm["incl-traits"].as<vector<string> >(), incl_traits);
+ }
+
+ if(vm.count("excl-traits")){
+ InputManager::parseInput(vm["excl-traits"].as<vector<string> >(), excl_traits);
+ }
+
+ if(vm.count("incl-markers")){
+ InputManager::parseInput(vm["incl-markers"].as<vector<string> >(), incl_marker_name);
+ }
+
+ if(vm.count("outcome")){
+ InputManager::parseInput(vm["outcome"].as<vector<string> >(), outcome_names);
+ }
+
+ // If no permutation seed given, generate a "random" seed
+ if(!vm.count("permu-seed")){
+ srand(time(NULL));
+ permu_seed = rand();
+ if(n_perms > 0){
+ Logger::log("INFO: No permu-seed given, using " + boost::lexical_cast<string>(permu_seed) + ".");
+ }
+ }
+
+ // check for overlap between covariates and const-covariates
+ set<string> covar_overlap;
+ std::set_intersection(covar_names.begin(), covar_names.end(),
+ const_covar_names.begin(), const_covar_names.end(),
+ std::inserter(covar_overlap, covar_overlap.begin()));
+
+ if(covar_overlap.size() > 0){
+ Logger::log_err("WARNING: overlapping covariates and const-covariates. "
+ "Removing overlapping covariates from the const-covariate list.");
+ set<string> tmp_set;
+ std::set_difference(const_covar_names.begin(), const_covar_names.end(),
+ covar_overlap.begin(), covar_overlap.end(),
+ std::inserter(tmp_set, tmp_set.begin()));
+ const_covar_names.clear();
+ const_covar_names.insert(tmp_set.begin(), tmp_set.end());
+ }
+
+ if(_phewas){
+ if(vm.count("outcome")){
+ Logger::log_err("WARNING: --outcome and --phewas are incompatible, ignoring --phewas");
+ _phewas = false;
+ } else if(include_traits && !vm.count("incl-traits")){
+ Logger::log_err("WARNING: --phewas used with --use-traits and without --incl-traits, ignoring --phewas");
+ _phewas = false;
+ }
+
+
+ }
+
+ out_f.open(out_fn.c_str());
+ if(!out_f){
+ Logger::log_err("ERROR: Cannot open regression output file '" + out_fn + "'", true);
+ }
+
+ if(n_perms){
+ permu_detail_f.open(permu_detail_fn.c_str());
+ if(!permu_detail_f && permu_detail_fn != ""){
+ Logger::log_err("ERROR: Cannot open permutation detail file '" + permu_detail_fn + "'", true);
+ }
+
+ permu_pval_f.open(permu_pval_fn.c_str());
+ if(!permu_pval_f && permu_pval_fn != ""){
+ Logger::log_err("ERROR: Cannot open permutation p-value file '" + permu_pval_fn + "'", true);
+ }
+
+ if(permu_sig > 0.1){
+ Logger::log_err("WARNING: permu-thresh seems set high; you may get many significant permuted results");
+ }
+
+ if(_lowmem){
+ permu_detail_tmpf.open(boost::iostreams::file_descriptor(fileno(std::tmpfile())),
+ std::ios_base::binary | std::ios_base::in | std::ios_base::out);
+ }
+
+ if(n_perms > std::numeric_limits<unsigned short>::max()){
+ Logger::log_err("WARNING: PLATO supports a maximum of " +
+ boost::lexical_cast<string>(std::numeric_limits<unsigned short>::max()) +
+ " permutations, restricting to this limit");
+ n_perms = std::numeric_limits<unsigned short>::max();
+ }
+ }
+
+#ifdef HAVE_CXX_MPI
+ int n_procs = 1;
+ MPI_Comm_size(MPI_COMM_WORLD, &n_procs);
+
+ if(n_procs > 1){
+ _use_mpi = true;
+ }
+
+ if(_use_mpi && !MPIUtils::threadsafe_mpi){
+ Logger::log_err("NOTICE: The MPI implementation being used is NOT thread-safe. Efficiency will likely improve with a thread-safe MPI implementation");
+ }
+#endif
+
+ _threaded = (n_threads - _use_mpi) > 0;
+
+ master_workers.setThreads(n_threads - _use_mpi);
+
+ if(model_files.size() == 0){
+ if(_onesided && !pairwise){
+ Logger::log_err("WARNING: --one-sided must be used with --pairwise; ignoring --one-sided directive");
+ _onesided = false;
+ }
+
+ if(exclude_markers && !include_traits){
+ Logger::log_err("ERROR: --exclude-markers requires --use-traits", true);
+ }
+ }else if (include_traits || _onesided || pairwise){
+ Logger::log_err("WARNING: --use-traits, --one-sided, and --pairwise have no effect when specifying models");
+ include_traits = _onesided = pairwise = false;
+ }
+
+ //OK, let's actually open these model files and read them!!
+ vector<string>::const_iterator mf_itr = model_files.begin();
+ while (mf_itr != model_files.end()) {
+
+ ifstream input((*mf_itr).c_str());
+
+ if (!input.is_open()) {
+ Logger::log_err("ERROR: Error opening model file: " + (*mf_itr), true);
+ }
+
+ string line;
+ while (getline(input, line)) {
+ // string isn't empty or starts with "#"
+ boost::algorithm::trim(line);
+ if(line.size() != 0 && line[0] != '#'){
+ _models.push_back(line);
+ }
+ }
+
+ input.close();
+ ++mf_itr;
+ }
+
+ if(_lowmem){
+ tmp_f.open(boost::iostreams::file_descriptor(fileno(std::tmpfile())),
+ std::ios_base::binary | std::ios_base::in | std::ios_base::out);
+ }
+
+ // set the bools for which ones to start and should we do weighting?
+ start_regular_workers = weight_complete = encoding != Encoding::WEIGHTED;
+ start_weight_workers = !start_regular_workers;
+
+}
+
+void Regression::runRegression(const DataSet& ds){
+
+ if(_phewas){
+ // I want the outcome_names to consist of all (enabled) traits, except for those
+ // specifically excluded, included (in the case of use_traits), or used as covariates
+
+ // outcome_names should be empty at this point, but let's make sure
+ outcome_names.clear();
+
+ outcome_names.insert(ds.beginTrait(), ds.endTrait());
+
+ set<string> outcome_tmp;
+ std::set_difference(outcome_names.begin(), outcome_names.end(),
+ excl_traits.begin(), excl_traits.end(),
+ std::inserter(outcome_tmp, outcome_tmp.begin()));
+
+ outcome_names.clear();
+
+ std::set_difference(outcome_tmp.begin(), outcome_tmp.end(),
+ covar_names.begin(), covar_names.end(),
+ std::inserter(outcome_names, outcome_names.begin()));
+
+ outcome_tmp.clear();
+ std::set_difference(outcome_names.begin(), outcome_names.end(),
+ const_covar_names.begin(), const_covar_names.end(),
+ std::inserter(outcome_tmp, outcome_tmp.begin()));
+ outcome_names.clear();
+ outcome_names.insert(outcome_tmp.begin(), outcome_tmp.end());
+
+ if(include_traits){
+ outcome_tmp.clear();
+ std::set_difference(outcome_names.begin(), outcome_names.end(),
+ incl_traits.begin(), incl_traits.end(),
+ std::inserter(outcome_tmp, outcome_tmp.begin()));
+
+ outcome_names.clear();
+ outcome_names.insert(outcome_tmp.begin(), outcome_tmp.end());
+ }
+
+ }
+
+ // Make sure all the outcomes are actual traits
+ set<string>::iterator out_itr = outcome_names.begin();
+ while(out_itr != outcome_names.end()){
+ if(!ds.isTrait(*out_itr)){
+ Logger::log_err("WARNING: '" + *out_itr + "' is not a recognized covariate, ignoring.");
+ outcome_names.erase(out_itr++);
+ } else{
+ ++out_itr;
+ }
+ }
+
+
+ set<string> all_traits;
+ if(_onesided){
+ all_traits.insert(ds.beginTrait(), ds.endTrait());
+ // remove excluded traits
+ set<string> tmp_alltrait;
+ std::set_difference(all_traits.begin(), all_traits.end(),
+ excl_traits.begin(), excl_traits.end(),
+ std::inserter(tmp_alltrait, tmp_alltrait.begin()));
+
+ all_traits.clear();
+
+ // remove covariates
+ std::set_difference(tmp_alltrait.begin(), tmp_alltrait.end(),
+ covar_names.begin(), covar_names.end(),
+ std::inserter(all_traits, all_traits.begin()));
+
+ tmp_alltrait.clear();
+ // remove the outcome variable(s)
+ std::set_difference(all_traits.begin(), all_traits.end(),
+ outcome_names.begin(), outcome_names.end(),
+ std::inserter(tmp_alltrait, tmp_alltrait.begin()));
+
+ // remove the const covariates
+ all_traits.clear();
+ std::set_difference(tmp_alltrait.begin(), tmp_alltrait.end(),
+ const_covar_names.begin(), const_covar_names.end(),
+ std::inserter(all_traits, all_traits.begin()));
+ }
+
+ if(include_traits){
+ // First let's get all of the traits to include...
+ if(incl_traits.size() == 0 && include_traits){
+ incl_traits.insert(ds.beginTrait(), ds.endTrait());
+ }
+ set<string> tmp_trait;
+ set<string>::iterator tmp_itr = tmp_trait.begin();
+ // Now, take out the excluded traits
+ std::set_difference(incl_traits.begin(), incl_traits.end(),
+ excl_traits.begin(), excl_traits.end(),
+ std::inserter(tmp_trait, tmp_trait.begin()));
+
+ incl_traits.clear();
+
+ // Now, take out the covariates
+ std::set_difference(tmp_trait.begin(), tmp_trait.end(),
+ covar_names.begin(), covar_names.end(),
+ std::inserter(incl_traits, incl_traits.begin()));
+
+ // now, take out the outcomes
+ tmp_trait.clear();
+ std::set_difference(incl_traits.begin(), incl_traits.end(),
+ outcome_names.begin(), outcome_names.end(),
+ std::inserter(tmp_trait, tmp_trait.begin()));
+
+ // and take out the const covariates
+ incl_traits.clear();
+ std::set_difference(tmp_trait.begin(), tmp_trait.end(),
+ const_covar_names.begin(), const_covar_names.end(),
+ std::inserter(incl_traits, incl_traits.begin()));
+
+ }else{
+ incl_traits.clear();
+ }
+
+ // Get the set of markers to include, if needed
+ set<const Marker*> marker_incl;
+ set<string>::const_iterator mni = incl_marker_name.begin();
+ while(mni != incl_marker_name.end()){
+ const Marker* found_marker = ds.getMarker(*mni);
+ if(found_marker == 0){
+ Logger::log_err("WARNING: could not find marker: " + *mni + ", ignoring");
+ }else{
+ marker_incl.insert(found_marker);
+ }
+ ++mni;
+ }
+
+ set<string>::iterator trait_itr = incl_traits.begin();
+ while (trait_itr != incl_traits.end()) {
+ if (!ds.isTrait(*trait_itr)) {
+ Utility::Logger::log_err("WARNING: '" + *trait_itr
+ + "' is not a recognized trait, ignoring.");
+ incl_traits.erase(trait_itr++);
+ } else {
+ ++trait_itr;
+ }
+ }
+
+ set<string>::iterator covar_itr = covar_names.begin();
+ while (covar_itr != covar_names.end()) {
+ if (!ds.isTrait(*covar_itr)) {
+ Utility::Logger::log_err("WARNING: '" + *covar_itr
+ + "' is not a recognized covariate, ignoring.");
+ covar_names.erase(covar_itr++);
+ } else {
+ ++covar_itr;
+ }
+ }
+
+ covar_itr = const_covar_names.begin();
+ while (covar_itr != const_covar_names.end()) {
+ if (!ds.isTrait(*covar_itr)) {
+ Utility::Logger::log_err("WARNING: '" + *covar_itr
+ + "' is not a recognized covariate, ignoring.");
+ const_covar_names.erase(covar_itr++);
+ } else {
+ ++covar_itr;
+ }
+ }
+
+ unsigned int n_snp = 0;
+ unsigned int n_trait = 0;
+
+ if(_models.size() > 0){
+ deque<string>::const_iterator mi = _models.begin();
+ Model* m = 0;
+ while(mi != _models.end() && (m ==0 || (m->traits.size() == 0 && m->markers.size() ==0))){
+ m = parseModelStr(*mi, ds);
+ ++mi;
+ }
+
+ n_snp = m->markers.size();
+ n_trait = m->traits.size();
+
+ delete m;
+
+ if(n_snp ==0 && n_trait == 0){
+ Logger::log_err("ERROR: Could not find a model to run", true);
+ }
+
+ } else{
+ // Calculate the number of SNPs / Env vars based on the options passed
+ // in to the Regression object.
+ n_snp = (!exclude_markers) * (1 + pairwise);
+ n_trait = (incl_traits.size() > 0) * (1 + pairwise * exclude_markers);
+ }
+
+ // Add in the extra dfs, along with their column IDs
+ if(encoding == Encoding::WEIGHTED){
+ for(unsigned int i=0; i<n_snp; i++){
+ _extra_df_map[covar_names.size() + const_covar_names.size() + 1 + i] = 1;
+ }
+ }
+
+ printHeader(n_snp, n_trait, out_f);
+
+ if(n_perms > 0 && permu_detail_f){
+ printHeader(n_snp, n_trait, permu_detail_f, true);
+ }
+
+ DataSet::const_sample_iterator si = ds.beginSample();
+
+ // set up the outcome vector
+ if(outcome_names.size() == 0){
+ while (si != ds.endSample()) {
+ // This will be NaN for missing, 0/1 for case/control
+ // or a quantitative value as appropriate
+ _pheno.push_back((*si)->getPheno());
+ ++si;
+ }
+ outcome_names.insert("");
+ // put it back!!
+ si = ds.beginSample();
+
+ }
+
+ for(unsigned int i=0; i<covar_names.size() + const_covar_names.size(); i++){
+ _covars.push_back(vector<float>());
+ _covars[_covars.size() - 1].reserve(_pheno.size());
+ }
+
+
+
+ // Now, set up the outcome variable and the covariates
+ while(si != ds.endSample()){
+ // now, set up the covariate vector(s)
+ //_covars.reserve(covar_names.size() + const_covar_names.size());
+ set<string>::const_iterator covar_itr = covar_names.begin();
+ set<string>::const_iterator c_covar_itr = const_covar_names.begin();
+ deque<vector<float> >::iterator val_itr = _covars.begin();
+
+
+ while(covar_itr != covar_names.end()){
+ (*val_itr).push_back(ds.getTrait(*covar_itr, *si));
+ ++covar_itr;
+ ++val_itr;
+ }
+
+ // Put the const covariates AFTER the "regular" covariates
+ while(c_covar_itr != const_covar_names.end()){
+ (*val_itr).push_back(ds.getTrait(*c_covar_itr, *si));
+ ++c_covar_itr;
+ ++val_itr;
+ }
+ ++si;
+ }
+
+ // set up the model generator
+ if (_models.size() == 0) {
+ _targeted = false;
+ if (_onesided) {
+ mgp = new OneSidedModelGenerator(ds, marker_incl,
+ incl_traits, all_traits, exclude_markers);
+ } else if (marker_incl.size() > 0) {
+ mgp = new BasicModelGenerator<
+ set<const Marker*>::const_iterator> (ds,
+ marker_incl.begin(), marker_incl.end(),
+ incl_traits, pairwise, exclude_markers);
+ } else {
+ mgp = new BasicModelGenerator<
+ DataSet::const_marker_iterator> (ds,
+ ds.beginMarker(), ds.endMarker(), incl_traits,
+ pairwise, exclude_markers);
+ }
+ } else {
+ mgp = new TargetedModelGenerator(ds, _models);
+ _targeted = true;
+ }
+
+ if(!_targeted){
+ _marker_itr_mutex.lock();
+ wt_marker_itr = new DataSet::const_marker_iterator(ds.beginMarker());
+ _marker_itr_mutex.unlock();
+ }
+
+ output_itr = outcome_names.begin();
+
+ ds_ptr = &ds;
+
+ if(*output_itr != "" || !initData()){
+ if(*output_itr == ""){
+ ++output_itr;
+ }
+ while(!resetPheno(*output_itr) && ++output_itr != outcome_names.end());
+ }
+
+ initPermutations(n_perms, _pheno.size(), permutations, permu_seed);
+
+ if(_use_mpi){
+ initMPI();
+ processMPI(n_threads);
+ // now, send a "please clean up" signal
+ mpi_envelope me;
+ mpi_clean mc;
+ me.msg = &mc;
+ pair<unsigned int, const char*> msg = MPIUtils::pack(me);
+ sendAll(msg.first, msg.second);
+ delete[] msg.second;
+
+ } else {
+ while(output_itr != outcome_names.end()){
+ // set up the phenotype (if we haven't already!)
+ si = ds.beginSample();
+
+ mgp->reset();
+
+ if (_threaded) {
+
+ for (unsigned int i = 0; i < n_threads; i++) {
+ boost::function<void()> f = boost::bind(&Regression::start, this) ;
+ master_workers.run(f);
+ }
+ master_workers.join_all();
+
+ } else {
+ // go here for debugging purposes, i.e. set --threads to 0
+ start();
+ }
+
+ while(++output_itr != outcome_names.end() && !resetPheno(*output_itr));
+
+ }
+ }
+
+ printResults();
+}
+
+void Regression::initPermutations(unsigned int n_perm, unsigned int sz,
+ deque<gsl_permutation*>& perm_list, unsigned long int seed){
+ // Initialize and save the permuations.
+ // NOTE: we are going to assume we have already set up the phenotype vector
+ const gsl_rng_type * T;
+ gsl_rng * r;
+
+ gsl_rng_env_setup();
+ T = gsl_rng_default;
+ r = gsl_rng_alloc (T);
+ gsl_rng_set(r, seed);
+
+ for(unsigned int i=0; i<n_perm; i++){
+ gsl_permutation* p = gsl_permutation_alloc(sz);
+ gsl_permutation_init(p);
+ gsl_ran_shuffle(r, p->data, p->size, sizeof(size_t));
+ perm_list.push_back(p);
+ }
+
+ gsl_rng_free(r);
+
+}
+
+void Regression::start(){
+
+ Model* nm = 0;
+
+ while( (nm = mgp->next()) ){
+ Result* r = run(*nm);
+
+ // run will return 0 if something went wrong (i.e. did not run anything)
+ if (r) {
+
+ // Run some univariate models
+ if (show_uni && nm->markers.size() + nm->traits.size() > 1) {
+ addUnivariate(*r, *nm);
+ }
+ // put the outcome right at the beginning of the prefix!
+ r->prefix = *output_itr + sep + r->prefix;
+ for(unsigned int i=0; i<r->sig_perms.size(); i++){
+ r->sig_perms[i]->prefix = *output_itr + sep + r->sig_perms[i]->prefix;
+ }
+
+ addResult(r);
+ }
+
+ delete nm;
+
+ // give someone else a chance ...
+ boost::this_thread::yield();
+
+ }
+}
+
+void Regression::addResult(Result* r){
+ if(r){
+ _result_mutex.lock();
+
+ for(unsigned int i=0; i<r->perm_pvals.size(); i++){
+ permu_pval_heap.push(r->perm_pvals[i]);
+ }
+
+ if (_lowmem) {
+ result_pvals.push_back(r->p_val);
+ printResultLine(*r, tmp_f);
+ tmp_f << "\n";
+ for(unsigned int i=0; i<r->sig_perms.size(); i++){
+ sig_permu_pvals.push_back(r->sig_perms[i]->p_val);
+ printResultLine(*(r->sig_perms[i]), permu_detail_tmpf);
+ permu_detail_tmpf << "\n";
+ }
+ delete r;
+ } else {
+ results.push_back(r);
+ for(unsigned int i=0; i<r->sig_perms.size(); i++){
+ sig_permus.push_back(r->sig_perms[i]);
+ }
+ }
+ _result_mutex.unlock();
+ }
+
+}
+
+bool Regression::resetPheno(const string& pheno){
+
+ _pheno.clear();
+ DataSet::const_sample_iterator si = ds_ptr->beginSample();
+ while(si != ds_ptr->endSample()){
+ _pheno.push_back(ds_ptr->getTrait(pheno,*si));
+ ++si;
+ }
+
+ // clear the data structures that depend on the phenotype
+ for(map<const Marker*, Result*>::const_iterator mu_itr = _marker_uni_result.begin();
+ mu_itr != _marker_uni_result.end(); mu_itr++){
+ _uni_results.push_back((*mu_itr).second);
+ }
+ for(map<string, Result*>::const_iterator tu_itr = _trait_uni_result.begin();
+ tu_itr != _trait_uni_result.end(); tu_itr++){
+ _uni_results.push_back((*tu_itr).second);
+ }
+ _marker_uni_result.clear();
+ _trait_uni_result.clear();
+ categ_weight.clear();
+
+ // if we have a phenotype that is not appropriate, move on to the
+ // next one
+
+ return initData();
+}
+
+void Regression::printHeader(unsigned int n_snp, unsigned int n_trait, ofstream& of, bool permu) {
+ // Now, print the header
+ of << "Outcome" << sep;
+
+ for (unsigned int i = 0; i < n_snp; i++) {
+ of << "Var" << i + 1 << "_ID" << sep << "Var" << i + 1 << "_Pos"
+ << sep << "Var" << i + 1 << "_MAF" << sep;
+ }
+
+ for (unsigned int i = 0; i < n_trait; i++) {
+ of << "Var" << n_snp + i + 1 << "_ID" << sep;
+ }
+
+ of << "Num_Missing" << sep;
+
+ printExtraHeader(of);
+
+ if(n_perms > 0 && permu){
+ of << "Permutation_Num" << sep;
+ }
+
+ if (n_snp + n_trait > 1) {
+ for (unsigned int i = 0; !permu && show_uni && i < n_snp + n_trait; i++) {
+ string hdr = "Uni_Var" + boost::lexical_cast<string>(i + 1);
+ if (i < n_snp) {
+ printMarkerHeader(hdr, of);
+ } else {
+ printVarHeader(hdr, of);
+ }
+ }
+
+ if (interactions) {
+ for (unsigned int i = 0; i < n_snp + n_trait; i++) {
+ string hdr = "Red_Var" + boost::lexical_cast<string>(i + 1);
+ if (i < n_snp) {
+ printMarkerHeader(hdr, of);
+ } else {
+ printVarHeader(hdr, of);
+ }
+ }
+
+ for (unsigned int i = 0; i < n_snp + n_trait; i++) {
+ string hdr = "Full_Var" + boost::lexical_cast<string>(i + 1);
+ if (i < n_snp) {
+ printMarkerHeader(hdr, of);
+ } else {
+ printVarHeader(hdr, of);
+ }
+ }
+
+ for (unsigned int i = 0; i < n_snp + n_trait; i++) {
+ for (unsigned int j = i + 1; j < n_snp + n_trait; j++) {
+ string v1_hdr = "Full_Var" + boost::lexical_cast<string>(i
+ + 1);
+ string v2_hdr = "_Var" + boost::lexical_cast<string>(j + 1);
+
+ if (encoding == Encoding::CODOMINANT && i < n_snp) {
+
+ if (j < n_snp) {
+ printVarHeader(v1_hdr + "_Het" + v2_hdr + "_Het", of);
+ printVarHeader(v1_hdr + "_Het" + v2_hdr + "_Hom", of);
+ printVarHeader(v1_hdr + "_Hom" + v2_hdr + "_Het", of);
+ printVarHeader(v1_hdr + "_Hom" + v2_hdr + "_Hom", of);
+
+ } else {
+ printVarHeader(v1_hdr + "_Het" + v2_hdr, of);
+ printVarHeader(v1_hdr + "_Hom" + v2_hdr, of);
+ }
+
+ } else {
+ printVarHeader(v1_hdr + v2_hdr, of);
+ }
+ }
+ }
+
+ // These will come in the suffix of the result!
+ of << "Red_Model_Pval" << sep << "Full_Model_Pval" << sep;
+ }
+ }
+
+ for (unsigned int i = 0; !interactions && i < n_snp + n_trait; i++) {
+ string hdr = "Var" + boost::lexical_cast<string>(i + 1);
+ if (i < n_snp) {
+ printMarkerHeader(hdr, of);
+ } else {
+ printVarHeader(hdr, of);
+ }
+ }
+
+ // If we are looking at single SNP models w/ categorical weight, print said weight!
+ if (encoding == Encoding::WEIGHTED && n_snp == 1 && n_trait == 0) {
+ of << "Categ_Weight" << sep;
+ }
+
+ of << "Overall_Pval";
+
+ if(n_perms > 0 && !permu){
+ of << sep << "Permuted_Pval";
+ }
+
+ // do not print correction headers for the significant permuted results
+ if(!permu){
+ set<CorrectionModel>::const_iterator c_itr = corr_methods.begin();
+ while (c_itr != corr_methods.end()) {
+ of << sep << (n_perms > 0 ? "Permuted" : "Overall") << "_Pval_adj_" << *c_itr;
+ ++c_itr;
+ }
+ }
+
+ of << std::endl;
+}
+
+Regression::Model* Regression::parseModelStr(const std::string& model_str, const DataSet& ds) {
+ vector<string> model_elements;
+ boost::algorithm::split(model_elements, model_str, boost::is_any_of(" \t"), boost::token_compress_on);
+
+ Model* model = new Model();
+
+ for(unsigned int i=0; i < model_elements.size(); i++){
+ const Marker* m = ds.getMarker(model_elements[i]);
+ if(m != 0){
+ model->markers.push_back(m);
+ }else if(ds.isTrait(model_elements[i])){
+ model->traits.push_back(model_elements[i]);
+ }else{ // unrecognized model element!!
+ model->markers.clear();
+ model->traits.clear();
+ break;
+ }
+ }
+
+ return model;
+}
+
+Regression::Result* Regression::addUnivar(const Marker* m, Result* r){
+ Result* toret = r;
+
+ _univar_mmutex.lock();
+ map<const Marker*, Result*>::const_iterator m_itr = _marker_uni_result.find(m);
+
+ // If this is the case, we have not seen this marker before
+ if (r && m_itr == _marker_uni_result.end()) {
+ _marker_uni_result[m] = r;
+ }else if (r){
+ // If we are here, we got scooped, so we'll just get rid of that result
+ toret = (*m_itr).second;
+ delete r;
+ }
+ _univar_mmutex.unlock();
+
+ return toret;
+}
+
+Regression::Result* Regression::addUnivar(const string& s, Result* r){
+ Result* toret = r;
+
+ _univar_tmutex.lock();
+ map<string, Result*>::const_iterator t_itr = _trait_uni_result.find(s);
+
+ // If this is the case, we have not seen this marker before
+ if (r && t_itr == _trait_uni_result.end()) {
+ _trait_uni_result[s] = r;
+ }else if (r){
+ // If we are here, we got scooped, so we'll just get rid of that result
+ toret = (*t_itr).second;
+ delete r;
+ }
+ _univar_tmutex.unlock();
+
+ return toret;
+}
+
+void Regression::addUnivariate(Result& r, const Model& m){
+ Result* univar_result;
+
+ for (unsigned int i = 0; i < m.markers.size(); i++) {
+ _univar_mmutex.lock();
+ map<const Marker*, Result*>::const_iterator m_itr =
+ _marker_uni_result.find(m.markers[i]);
+
+
+ // If this is the case, we have not seen this marker before
+ if (m_itr == _marker_uni_result.end()) {
+ _univar_mmutex.unlock();
+ Model uni_m;
+ uni_m.markers.push_back(m.markers[i]);
+ uni_m.permute = false;
+
+ univar_result = run(uni_m);
+ univar_result = addUnivar(m.markers[i], univar_result);
+ } else {
+ univar_result = ((*m_itr).second);
+ _univar_mmutex.unlock();
+ }
+
+ r.unimodel.push_back(univar_result);
+ }
+
+ for (unsigned int i = 0; i < m.traits.size(); i++) {
+ _univar_tmutex.lock();
+ map<string, Result*>::const_iterator t_itr =
+ _trait_uni_result.find(m.traits[i]);
+ // If this is the case, we have not seen this marker before
+ if (t_itr == _trait_uni_result.end()) {
+ _univar_tmutex.unlock();
+ Model t_m;
+ t_m.traits.push_back(m.traits[i]);
+ t_m.permute = false;
+
+ univar_result = run(t_m);
+ univar_result = addUnivar(m.traits[i], univar_result);
+ } else {
+ univar_result = ((*t_itr).second);
+ _univar_tmutex.unlock();
+ }
+
+ r.unimodel.push_back(univar_result);
+ }
+}
+
+float Regression::addWeight(const Marker* m, const Result* r){
+ _categ_mutex.lock();
+ float wt = (r ? r->coeffs[0] / (r->coeffs[0] + r->coeffs[1]) : 0.5);
+ wt = categ_weight[m] = (std::isfinite(wt) ? wt : 0.5);
+ _categ_mutex.unlock();
+ return wt;
+}
+
+float Regression::getCategoricalWeight(const Marker* m){
+
+ float toret = 0.5;
+
+ _categ_mutex.lock();
+ map<const Marker*, float>::const_iterator w_itr = categ_weight.find(m);
+ _categ_mutex.unlock();
+ if(w_itr != categ_weight.end()){
+ toret = (*w_itr).second;
+ } else {
+ // OK, at this point, we know we don't have the categorical value
+ Model mod;
+ mod.markers.push_back(m);
+ mod.categorical = true;
+
+ Result* r = run(mod);
+ toret = addWeight(m, r);
+
+ if(r){
+ delete r;
+ }
+ }
+
+ return toret;
+
+}
+
+unsigned int Regression::getNumCols(unsigned int n_loci, unsigned int n_trait, unsigned int n_covar,
+ bool interact, bool categorical){
+ unsigned int n_cols = 1 + n_covar + n_loci + n_trait;
+ if(categorical){
+ n_cols += n_loci;
+ }
+
+ if(interact){
+ unsigned int n_vars = n_cols - 1 - n_covar;
+ n_cols += (n_vars * (n_vars - 1)) / 2;
+ if(categorical){
+ // we don't do interactions w/in category, so subtract the # of loci
+ n_cols -= n_loci;
+ }
+ }
+
+ return n_cols;
+}
+
+bool Regression::addDataRow(boost::multi_array_ref<double, 2>& out_data,
+ const vector<float>& covar_vals, const vector<unsigned char>& geno_vals,
+ const vector<float>& geno_weight, const vector<float>& trait_vals,
+ const EncodingModel& enc, bool interact, bool categorical,
+ unsigned int& n_samples, unsigned int& n_missing){
+
+ unsigned int n_cols = out_data.shape()[1];
+ double row_data[n_cols];
+ unsigned int pos = 0;
+
+ // first position is ALWAYS 1!
+ row_data[pos++] = 1;
+
+ // Now, the covariates
+ for(unsigned int i=0; i<covar_vals.size(); i++){
+ row_data[pos++] = covar_vals[i];
+ }
+
+ // Now, work through the markers
+ for (unsigned int i = 0; i<geno_vals.size(); i++){
+ unsigned char g = geno_vals[i];
+
+ if(g == Sample::missing_allele){
+ row_data[pos++] = numeric_limits<double>::quiet_NaN();
+ if(categorical || enc == Encoding::CODOMINANT){
+ row_data[pos++] = numeric_limits<double>::quiet_NaN();
+ }
+ } else {
+ if(categorical){
+ row_data[pos++] = EncodingModel(Encoding::DOMINANT)(g);
+ row_data[pos++] = EncodingModel(Encoding::RECESSIVE)(g);
+ } else if (enc == Encoding::CODOMINANT){
+ row_data[pos++] = (g == 1);
+ row_data[pos++] = (g == 2);
+ }else if (enc == Encoding::WEIGHTED){
+ // works if w in [0,1]
+ row_data[pos++] = geno_weight[i] * (g == 1) + (g == 2);
+ } else {
+ row_data[pos++] = enc(g);
+ }
+ }
+ }
+
+ // Now, work through the traits
+ for(unsigned int i = 0; i < trait_vals.size(); i++){
+ row_data[pos++] = trait_vals[i];
+ }
+
+ unsigned int numCovars = covar_vals.size();
+ unsigned int n_vars = geno_vals.size() + trait_vals.size();
+ unsigned int n_loci = geno_vals.size();
+ // Now, the interaction terms
+ for (unsigned int i = 0; interact && i < n_vars; i++) {
+ for (unsigned int j = i + 1; j < (n_vars); j++) {
+ if(categorical || enc == Encoding::CODOMINANT){
+ // we have to be a little careful here.
+ if(i < n_loci){
+ if(j < n_loci){
+ row_data[pos++] = row_data[i*2 + numCovars + 1] * row_data[j*2 + numCovars + 1];
+ row_data[pos++] = row_data[i*2 + numCovars + 1] * row_data[j*2 + numCovars + 2];
+ row_data[pos++] = row_data[i*2 + numCovars + 2] * row_data[j*2 + numCovars + 1];
+ row_data[pos++] = row_data[i*2 + numCovars + 2] * row_data[j*2 + numCovars + 2];
+ } else {
+ row_data[pos++] = row_data[i*2 + numCovars + 1] * row_data[j + n_loci + numCovars + 1];
+ row_data[pos++] = row_data[i*2 + numCovars + 2] * row_data[j + n_loci + numCovars + 1];
+ }
+ } else {
+ row_data[pos++] = row_data[i + n_loci + numCovars + 1] * row_data[j + n_loci + numCovars + 1];
+ }
+
+ }else{
+ row_data[pos++] = row_data[i + numCovars + 1] * row_data[j + numCovars + 1];
+ }
+ }
+ }
+
+ // OK, check for missingness before adding it to the dataset
+ // NOTE: we ASSUME that the phenotype is not missing here!
+ bool ismissing = false;
+ for(unsigned int i=0; !ismissing && i<pos; i++){
+ ismissing |= std::isnan(row_data[i]);
+ }
+
+ if(!ismissing){
+ // do a fast memory copy into the data for regression
+ std::memcpy(&out_data[n_samples - n_missing][0], row_data, sizeof(double) * (pos));
+ //ret_val->outcome[n_samples - n_missing] = pheno_perm[n_samples];
+ } else {
+ ++n_missing;
+ }
+
+ ++n_samples;
+
+ return !ismissing;
+}
+
+Regression::calc_matrix* Regression::getCalcMatrix(const mpi_query& mq, const gsl_permutation* permu){
+ calc_matrix* ret_val = new calc_matrix();
+
+ unsigned int numLoci = mq.marker_idx.size();
+ unsigned int numCovars = _covar_data.size();
+ unsigned int permuCovars = numCovars - n_const_covars;
+ unsigned int numTraits = mq.trait_idx.size();
+
+ ret_val->n_cols = getNumCols(numLoci, numTraits, numCovars, _extra_data->interactions,
+ (mq.categorical || _extra_data->encoding == Encoding::CODOMINANT));
+
+ // Allocate a huge amount of memory for the regression here
+ ret_val->outcome = new double[_curr_pheno.size()];
+ ret_val->data = new double[_curr_pheno.size()* ret_val->n_cols];
+
+ // Give the permutation here
+ float *pheno_perm;
+ vector<float *> covars_perm;
+ permuteData(_curr_pheno, pheno_perm, _covar_data, covars_perm, permuCovars, permu);
+
+ boost::multi_array_ref<double, 2> regress_data(ret_val->data, boost::extents[_curr_pheno.size()][ret_val->n_cols]);
+
+ float maf_sum[numLoci];
+
+ for(unsigned int i=0; i<numLoci; i++){
+ maf_sum[i] = 0;
+ }
+
+ vector<float> covar_data;
+ covar_data.reserve(_covar_data.size());
+
+ vector<float> trait_data;
+ trait_data.reserve(mq.trait_idx.size());
+
+ vector<unsigned char> geno_data;
+ geno_data.reserve(mq.marker_idx.size());
+
+ vector<float> geno_weight;
+ geno_weight.reserve(mq.marker_idx.size());
+
+
+ unsigned int n_samples = 0;
+ unsigned int n_missing = 0;
+
+ for(unsigned int k=0; k<_curr_pheno.size(); k++){
+
+ if(!std::isnan(pheno_perm[n_samples])){
+ covar_data.clear();
+ geno_data.clear();
+ geno_weight.clear();
+ trait_data.clear();
+
+ for(unsigned int i=0; i<permuCovars; i++){
+ covar_data.push_back(covars_perm[i][n_samples]);
+ }
+
+ // Now, the unpermuted covariates
+ for(unsigned int i=permuCovars; i<_covar_data.size(); i++){
+ covar_data.push_back(_covar_data[i][n_samples]);
+ }
+
+
+ for (unsigned int i = 0; i<numLoci; i++){
+ unsigned char g = 2*_marker_data[mq.marker_idx[i]].first[2*n_samples] +
+ _marker_data[mq.marker_idx[i]].first[2*n_samples + 1];
+
+ geno_data.push_back(g == 3? Sample::missing_allele : g);
+ if ((!mq.categorical) && _extra_data->encoding == Encoding::WEIGHTED){
+ geno_weight.push_back(_marker_data[mq.marker_idx[i]].second);
+ }
+ }
+
+ for(unsigned int i = 0; i < numTraits; i++){
+ trait_data.push_back(_trait_data[mq.trait_idx[i]][n_samples]);
+ }
+
+ if(addDataRow(regress_data, covar_data, geno_data, geno_weight,
+ trait_data, _extra_data->encoding, _extra_data->interactions,
+ mq.categorical, n_samples, n_missing)){
+ ret_val->outcome[n_samples - n_missing - 1] = pheno_perm[n_samples - 1];
+ for(unsigned int i=0; i<numLoci; i++){
+ maf_sum[i] += geno_data[i];
+ }
+ }
+
+ } else {
+ ++n_samples;
+ ++n_missing;
+ }
+ }
+
+ // The number of variables in the "reduced" model is:
+ // # of covariates if no interactions
+ // # of main effects (total columns - # interactions) o/w
+
+ // # of interaction terms
+ unsigned int n_interact = ret_val->n_cols - numLoci - numTraits - numCovars
+ - 1 - (mq.categorical || _extra_data->encoding == Encoding::CODOMINANT) * numLoci;
+ ret_val->red_vars = n_interact == 0 ? numCovars : ret_val->n_cols - n_interact - 1;
+ ret_val->n_sampl = n_samples - n_missing;
+
+ if(ret_val->n_sampl < ret_val->n_cols){
+ // If this is the case, we CANNOT run this!
+ delete ret_val;
+ ret_val = 0;
+ } else {
+ // Print some summary data helpful for the result that we get when
+ // calculating the matrix to send.
+ stringstream ss;
+ for(unsigned int i=0; i<numLoci; i++){
+ float maf = maf_sum[i] / (2*static_cast<float>(n_samples-n_missing));
+ ss << _marker_desc[mq.marker_idx[i]] << maf << _extra_data->sep;
+ }
+ for(unsigned int i=0; i<numTraits; i++){
+ ss << _trait_desc[mq.trait_idx[i]] << _extra_data->sep;
+ }
+ ss << n_missing << _extra_data->sep;
+ ret_val->prefix = ss.str();
+ ss.clear();
+ }
+
+ // delete the permuted data, please!
+ if(permu != 0){
+ delete[] pheno_perm;
+ for(unsigned int i=0; i<covars_perm.size(); i++){
+ delete[] covars_perm[i];
+ }
+ }
+
+ return ret_val;
+}
+
+Regression::calc_matrix* Regression::getCalcMatrix(const Model& m, const gsl_permutation* permu){
+ calc_matrix* ret_val = new calc_matrix();
+
+ unsigned int numLoci = m.markers.size();
+ unsigned int numCovars = covar_names.size() + const_covar_names.size();
+ unsigned int permuCovars = covar_names.size();
+ unsigned int numTraits = m.traits.size();
+
+ ret_val->n_cols = getNumCols(numLoci, numTraits, numCovars, interactions,
+ (m.categorical || encoding == Encoding::CODOMINANT));
+
+ // Allocate a huge amount of memory for the regression here
+ ret_val->outcome = new double[_pheno.size()];
+ ret_val->data = new double[_pheno.size()* ret_val->n_cols];
+
+ // Give the permutation here
+ float *pheno_perm;
+ vector<float *> covars_perm;
+ permuteData(_pheno, pheno_perm, _covars, covars_perm, permuCovars, permu);
+
+ boost::multi_array_ref<double, 2> regress_data(ret_val->data, boost::extents[_pheno.size()][ret_val->n_cols]);
+
+ float maf_sum[numLoci];
+
+ for(unsigned int i=0; i<numLoci; i++){
+ maf_sum[i] = 0;
+ }
+
+ vector<float> covar_data;
+ covar_data.reserve(_covars.size());
+
+ vector<float> trait_data;
+ trait_data.reserve(m.traits.size());
+
+ vector<unsigned char> geno_data;
+ geno_data.reserve(m.markers.size());
+
+ vector<float> geno_weight;
+ geno_weight.reserve(m.markers.size());
+
+
+ DataSet::const_sample_iterator si = ds_ptr->beginSample();
+ DataSet::const_sample_iterator se = ds_ptr->endSample();
+
+ unsigned int n_samples = 0;
+ unsigned int n_missing = 0;
+
+ while(si != se){
+ if(!std::isnan(pheno_perm[n_samples])){
+ covar_data.clear();
+ geno_data.clear();
+ geno_weight.clear();
+ trait_data.clear();
+
+ for(unsigned int i=0; i<permuCovars; i++){
+ covar_data.push_back(covars_perm[i][n_samples]);
+ }
+
+ // Now, the unpermuted covariates
+ for(unsigned int i=permuCovars; i<_covars.size(); i++){
+ covar_data.push_back(_covars[i][n_samples]);
+ }
+
+
+ for (unsigned int i = 0; i<numLoci; i++){
+ geno_data.push_back((*si)->getAdditiveGeno(*(m.markers[i])));
+ if ((!m.categorical) && encoding == Encoding::WEIGHTED){
+ geno_weight.push_back(getCategoricalWeight(m.markers[i]));
+ }
+ }
+
+ for(unsigned int i = 0; i < numTraits; i++){
+ trait_data.push_back(ds_ptr->getTrait(m.traits[i], *si));
+ }
+
+ if(addDataRow(regress_data, covar_data, geno_data, geno_weight,
+ trait_data, encoding, interactions, m.categorical,
+ n_samples, n_missing)){
+ ret_val->outcome[n_samples - n_missing - 1] = pheno_perm[n_samples - 1];
+ for(unsigned int i=0; i<numLoci; i++){
+ maf_sum[i] += geno_data[i];
+ }
+ }
+
+ } else {
+ ++n_samples;
+ ++n_missing;
+ }
+
+ ++si;
+ }
+
+ // The number of variables in the "reduced" model is:
+ // # of covariates if no interactions
+ // # of main effects (total columns - # interactions) o/w
+
+ // # of interaction terms
+ unsigned int n_interact = ret_val->n_cols - numLoci - numTraits - numCovars
+ - 1 - (m.categorical || encoding == Encoding::CODOMINANT) * numLoci;
+ ret_val->red_vars = n_interact == 0 ? numCovars : ret_val->n_cols - n_interact - 1;
+ ret_val->n_sampl = n_samples - n_missing;
+
+ if(ret_val->n_sampl < ret_val->n_cols){
+ // If this is the case, we CANNOT run this!
+ delete ret_val;
+ ret_val = 0;
+ } else {
+ // Print some summary data helpful for the result that we get when
+ // calculating the matrix to send.
+ stringstream ss;
+ for(unsigned int i=0; i<numLoci; i++){
+ float maf = maf_sum[i] / (2*static_cast<float>(n_samples-n_missing));
+ ss << getMarkerDesc(m.markers[i], sep) << maf << sep;
+ }
+ for(unsigned int i=0; i<numTraits; i++){
+ ss << m.traits[i] << sep;
+ }
+ ss << n_missing << sep;
+ ret_val->prefix = ss.str();
+ ss.clear();
+ }
+
+ // delete the permuted data, please!
+ if(permu != 0){
+ delete[] pheno_perm;
+ for(unsigned int i=0; i<covars_perm.size(); i++){
+ delete[] covars_perm[i];
+ }
+ }
+
+ return ret_val;
+}
+
+void Regression::permuteData(const vector<float>& pheno, float*& pheno_perm,
+ const deque<vector<float> >& covars, vector<float*>& covar_perm,
+ unsigned int permuCovars, const gsl_permutation* permu){
+
+ covar_perm.clear();
+ covar_perm.reserve(permuCovars);
+
+ if(permu != 0){
+ unsigned int sz = permu->size;
+
+ pheno_perm = new float[sz];
+ for(unsigned int i=0; i<permuCovars; i++){
+
+ }
+
+ gsl_vector_float_view perm_v;
+ gsl_vector_float_const_view orig_v = gsl_vector_float_const_view_array(&pheno[0], sz);
+ perm_v = gsl_vector_float_view_array(pheno_perm, sz);
+ gsl_vector_float_memcpy(&perm_v.vector, &orig_v.vector);
+ gsl_permute_vector_float(permu, &perm_v.vector);
+
+ for(unsigned int i=0; i<permuCovars; i++){
+ covar_perm.push_back(new float[sz]);
+ gsl_vector_float_const_view ocv = gsl_vector_float_const_view_array(&covars[i][0], sz);
+ perm_v = gsl_vector_float_view_array(&covar_perm[i][0], sz);
+ gsl_vector_float_memcpy(&perm_v.vector, &ocv.vector);
+ gsl_permute_vector_float(permu, &perm_v.vector);
+ }
+
+ } else {
+ pheno_perm = const_cast<float*>(&pheno[0]);
+ for(unsigned int i=0; i<permuCovars; i++){
+ covar_perm.push_back(const_cast<float*>(&covars[i][0]));
+ }
+ }
+
+}
+
+Regression::Result* Regression::run(const Model& m) {
+
+ calc_matrix* all_data = getCalcMatrix(m);
+
+ Result* r = 0;
+
+ calc_fn& calculate = getCalcFn();
+
+ if(all_data){
+ r = calculate(all_data->outcome, all_data->data, all_data->n_cols,
+ all_data->n_sampl, 0, all_data->red_vars, true, getExtraData());
+
+
+ if(r){
+ // print the # missing from this model
+ r->prefix = all_data->prefix + r->prefix;
+
+ if(encoding == Encoding::WEIGHTED && m.markers.size() == 1 && m.traits.size() == 0 && !m.categorical){
+ //ss << categ_weight[0] << sep;
+ _categ_mutex.lock();
+ r->suffix += boost::lexical_cast<string>(categ_weight[m.markers[0]]) + sep;
+ _categ_mutex.unlock();
+ }
+ }
+ delete all_data;
+
+ genPermuData perm_fn = boost::bind(&Regression::getCalcMatrix, boost::ref(*this), boost::cref(m), _1);
+
+
+ if(m.permute && r && n_perms > 0){
+ runPermutations(r, perm_fn, permutations, calculate, getExtraData());
+ }
+ }else{
+ Logger::log_err("WARNING: not enough samples in model: '" + m.getID() + "'!");
+ r = 0;
+ }
+
+ return r;
+}
+
+void Regression::runPermutations(Result* r, genPermuData& perm_fn, const deque<gsl_permutation*>& permus, calc_fn& calculate, const ExtraData* ed){
+ r->perm_pvals.reserve(permus.size());
+ for(unsigned int i=0; i<permus.size(); i++){
+ calc_matrix* all_data = perm_fn(permus[i]);
+ if(all_data){
+ Result *tmp_r = calculate(all_data->outcome, all_data->data, all_data->n_cols,
+ all_data->n_sampl, 0, all_data->red_vars, ed->run_full_permu, ed);
+
+ if(tmp_r){
+ r->perm_pvals.push_back(tmp_r->p_val);
+ if(tmp_r->p_val < ed->permu_thresh){
+ tmp_r->prefix = all_data->prefix + tmp_r->prefix;
+ tmp_r->permu_idx = i+1;
+ r->sig_perms.push_back(tmp_r);
+ } else {
+ delete tmp_r;
+ }
+ } else {
+ r->perm_pvals.push_back(2);
+ }
+ delete all_data;
+ } else {
+ r->perm_pvals.push_back(3);
+ }
+ }
+
+ r->suffix += boost::lexical_cast<string>(r->p_val) + ed->sep;
+ //r->p_val = n_better / static_cast<float>(permus.size());
+}
+
+void Regression::printResults(){
+
+ // first things first, try to print our significant results
+ if(n_perms > 0 && permu_detail_f){
+ vector<std::iostream::pos_type> p_file_pos;
+ vector<size_t> p_idx_pos;
+ size_t p_n_results = _lowmem ? sig_permu_pvals.size() : sig_permus.size();
+ string p_tmpf_line;
+
+ if (_lowmem) {
+ p_idx_pos.reserve(p_n_results);
+
+ for(size_t i=0; i<p_n_results; i++){
+ p_idx_pos.push_back(i);
+ }
+
+ std::sort(p_idx_pos.begin(), p_idx_pos.end(), pval_sorter(sig_permu_pvals));
+
+ p_file_pos.reserve(p_n_results+1);
+ // get the positions of the beginning of every line
+ permu_detail_tmpf.flush();
+ permu_detail_tmpf.seekg(0, std::ios_base::beg);
+ p_file_pos.push_back(permu_detail_tmpf.tellg());
+ while( getline(permu_detail_tmpf, p_tmpf_line) ){
+ p_file_pos.push_back(permu_detail_tmpf.tellg());
+ }
+ permu_detail_tmpf.seekg(0, std::ios_base::beg);
+ permu_detail_tmpf.clear();
+ } else {
+ // Perhaps sort the deque of results based on overall p-values
+ std::sort(sig_permus.begin(), sig_permus.end(), result_sorter());
+ }
+
+ for (size_t i = 0; i < p_n_results; i++) {
+
+ if(_lowmem){
+ permu_detail_tmpf.seekg(p_file_pos[p_idx_pos[i]], std::ios_base::beg);
+ p_tmpf_line = "";
+ std::getline(permu_detail_tmpf, p_tmpf_line);
+ permu_detail_f << p_tmpf_line;
+ permu_detail_f << sig_permu_pvals[p_idx_pos[i]];
+ permu_detail_tmpf.clear();
+ } else {
+ printResultLine(*(sig_permus[i]), permu_detail_f);
+ permu_detail_f << sig_permus[i]->p_val;
+ }
+
+ permu_detail_f << std::endl;
+ }
+ }
+
+
+ vector<std::iostream::pos_type> file_pos;
+ vector<size_t> idx_pos;
+ size_t n_results = _lowmem ? result_pvals.size() : results.size();
+ string tmpf_line;
+
+ if (_lowmem) {
+ idx_pos.reserve(n_results);
+
+ for(size_t i=0; i<n_results; i++){
+ idx_pos.push_back(i);
+ }
+
+ std::sort(idx_pos.begin(), idx_pos.end(), pval_sorter(result_pvals));
+
+ file_pos.reserve(n_results+1);
+ // get the positions of the beginning of every line
+ tmp_f.flush();
+ tmp_f.seekg(0, std::ios_base::beg);
+ file_pos.push_back(tmp_f.tellg());
+ while( getline(tmp_f, tmpf_line) ){
+ file_pos.push_back(tmp_f.tellg());
+ }
+ tmp_f.seekg(0, std::ios_base::beg);
+ tmp_f.clear();
+
+ } else {
+ // Perhaps sort the deque of results based on overall p-values
+ std::sort(results.begin(), results.end(), result_sorter());
+ }
+
+ // I need the permuted P-values here!!
+ // NOTE: It is VERY important for these results to be printed in sorted order!!!
+ if(n_perms > 0){
+ unsigned int n_total_pval = permu_pval_heap.size();
+ double denom = static_cast<double>(n_total_pval);
+ float curr_pval;
+ float permu_pval;
+
+ for (size_t i = 0; i < n_results; i++) {
+
+ curr_pval = _lowmem ? result_pvals[idx_pos[i]] : results[i]->p_val;
+
+ // we need to find the p-value based on the heap
+ while(permu_pval_heap.size() > 0 && permu_pval_heap.top() < curr_pval){
+ // OK, so we need to pop from our heap
+ if(permu_pval_f){
+ permu_pval_f << permu_pval_heap.top() << std::endl;
+ }
+ permu_pval_heap.pop();
+ }
+
+ permu_pval = (n_total_pval - permu_pval_heap.size() ) / denom;
+
+ if(_lowmem){
+ result_pvals[idx_pos[i]] = permu_pval;
+ } else {
+ results[i]->p_val = permu_pval;
+ }
+ }
+ }
+
+ // Now, let's do some multiple test correction!
+ map<CorrectionModel, vector<float> > pval_corr;
+
+ // don't bother with the work if there's no correction desired!
+ if (corr_methods.size()) {
+
+ vector<float> pv_in;
+ if (_lowmem) {
+ pv_in.reserve(n_results);
+ for(size_t i=0; i<n_results; i++){
+ pv_in.push_back(result_pvals[idx_pos[i]]);
+ }
+ } else {
+ pv_in.reserve(n_results);
+ for (size_t i = 0; i < n_results; i++) {
+ pv_in.push_back(results[i]->p_val);
+ }
+ }
+
+ set<CorrectionModel>::const_iterator c_itr = corr_methods.begin();
+ while (c_itr != corr_methods.end()) {
+ Correction::getCorrectionMethod(*c_itr)->correct(pv_in, pval_corr[(*c_itr)]);
+ ++c_itr;
+ }
+ }
+
+ // NOTE: It is VERY important for these results to be printed in sorted order!!!
+ for (size_t i = 0; i < n_results; i++) {
+ // If we've gone over the threshold, stop printing!
+ if ((_lowmem ? result_pvals[idx_pos[i]] : results[i]->p_val) > cutoff_p) {
+ break;
+ }
+
+ if(_lowmem){
+ tmp_f.seekg(file_pos[idx_pos[i]], std::ios_base::beg);
+ tmpf_line = "";
+ std::getline(tmp_f, tmpf_line);
+ out_f << tmpf_line;
+ out_f << result_pvals[idx_pos[i]];
+ tmp_f.clear();
+ } else {
+ printResultLine(*(results[i]), out_f);
+ out_f << results[i]->p_val;
+ }
+
+ // print some corrected p-values!
+ // NOTE: we assume that "set" and "map" use the same ordering!!
+ map<CorrectionModel, vector<float> >::const_iterator p_itr =
+ pval_corr.begin();
+ while (p_itr != pval_corr.end()) {
+ out_f << sep << (*p_itr).second[i];
+ ++p_itr;
+ }
+
+ out_f << std::endl;
+ }
+
+ // if we did permutations, print all the pvalues that didn't get printed so far
+ if(n_perms > 0 && permu_pval_f){
+ while(permu_pval_heap.size() >0){
+ // OK, so we need to pop from our heap
+ permu_pval_f << permu_pval_heap.top() << std::endl;
+ permu_pval_heap.pop();
+ }
+ }
+}
+
+const Regression::ExtraData* Regression::getExtraData() const{
+ if(!class_data){
+ class_data = new ExtraData();
+ class_data->interactions = interactions;
+ class_data->encoding = encoding;
+ class_data->run_full_permu = full_permu;
+ class_data->const_covars = const_covar_names.size();
+ class_data->base_covars = covar_names.size() + const_covar_names.size();
+ class_data->sep = sep;
+ class_data->permu_thresh = permu_sig;
+ class_data->n_extra_df_col = 0;
+ for(map<unsigned int, unsigned int>::const_iterator dfi = _extra_df_map.begin();
+ dfi != _extra_df_map.end(); dfi++){
+ class_data->n_extra_df_col += (*dfi).second;
+ }
+ unsigned int* colptr = class_data->extra_df_col = new unsigned int[class_data->n_extra_df_col];
+ for(map<unsigned int, unsigned int>::const_iterator dfi = _extra_df_map.begin();
+ dfi != _extra_df_map.end(); dfi++){
+ for(unsigned int i=0; i<(*dfi).second; i++){
+ *(colptr++) = (*dfi).second;
+ }
+ }
+ }
+
+ return class_data;
+}
+
+unsigned int Regression::findDF(const gsl_matrix* P,
+ unsigned int reduced_vars,
+ unsigned int n_dropped,
+ unsigned int* extra_cols,
+ unsigned int n_extra_cols) {
+
+ unsigned int n_cols = P->size1;
+ unsigned int edf = n_cols - reduced_vars;
+
+ // Now, we need to actually find the column indices that were kept, but only
+ // if we dropped any
+ if (n_dropped > 0) {
+ gsl_vector* df_check = gsl_vector_calloc(n_cols);
+ gsl_vector* df_check_t = gsl_vector_calloc(n_cols);
+ for (unsigned int i = reduced_vars; i < n_cols; i++) {
+ gsl_vector_set(df_check, i, 1);
+ }
+
+ // Now, permute the df_check
+ gsl_blas_dgemv(CblasNoTrans, 1.0, P, df_check, 0.0, df_check_t);
+
+ // unset the last # dropped
+ for (unsigned int i = 1; i <= n_dropped; i++) {
+ gsl_vector_set(df_check_t, n_cols - i, 0);
+ }
+
+ // unpermute
+ gsl_blas_dgemv(CblasTrans, 1.0, P, df_check_t, 0.0, df_check);
+
+ edf = gsl_blas_dasum(df_check);
+
+ // Now, iterate over all of the elements in the extra_df_map:
+ for (unsigned int i=0; i<n_extra_cols && extra_cols[i] < n_cols; i++){
+ edf += gsl_vector_get(df_check, extra_cols[i]);
+ }
+ gsl_vector_free(df_check);
+ gsl_vector_free(df_check_t);
+ } else if(n_extra_cols > 0) {
+ for (unsigned int i=0; i<n_extra_cols && extra_cols[i] < n_cols; i++){
+ edf += (extra_cols[i] >= reduced_vars);
+ }
+ }
+
+ return edf;
+}
+
+void Regression::printResult(const Result& r, std::ostream& of){
+ if(r.submodel){
+ printResult(*(r.submodel), of);
+ }
+
+ for(unsigned int j=0;j<r.n_vars; j++){
+ of << r.p_vals[j] << sep
+ << r.coeffs[j] << sep
+ << r.stderr[j] << sep;
+ }
+}
+
+void Regression::printResultLine(const Result& r, std::ostream& of){
+
+ of << r.prefix;
+ of << printExtraResults(r);
+
+ if(r.permu_idx != 0){
+ of << r.permu_idx << sep;
+ }
+
+ for(unsigned int i=0; i<r.unimodel.size(); i++){
+ if(r.unimodel[i]){
+ printResult(*(r.unimodel[i]), of);
+ } else{
+ // If we're here, we couldn't run the univariate model
+ // (likely something VERY bad has happened)
+ of << numeric_limits<float>::quiet_NaN() << sep
+ << numeric_limits<float>::quiet_NaN() << sep
+ << numeric_limits<float>::quiet_NaN() << sep;
+ }
+ }
+
+ printResult(r, of);
+ if(r.submodel && r.submodel->n_vars > 0){\
+ of << r.submodel->p_val << sep;
+ }
+ of << r.suffix;
+}
+
+pair<unsigned int, const char*> Regression::generateMsg(const Model& m){
+ pair<unsigned int, const char*> retval(0,0);
+
+ ++msg_id;
+ mpi_query q;
+ q.msg_id = msg_id;
+
+ for(unsigned int i=0; i<m.markers.size(); i++){
+ q.marker_idx.push_back(marker_idx_map[m.markers[i]]);
+ }
+ for(unsigned int i=0; i<m.traits.size(); i++){
+ q.trait_idx.push_back(trait_idx_map[m.traits[i]]);
+ }
+
+ q.categorical = m.categorical;
+ q.permute = m.permute;
+
+ mpi_envelope me;
+ me.msg = &q;
+ retval = MPIUtils::pack(me);
+ work_map[msg_id] = &m;
+
+ return retval;
+}
+
+pair<unsigned int, const char*> Regression::generateMultiMsg(vector<const Model*>& m){
+ pair<unsigned int, const char*> retval(0,0);
+
+ mpi_multiquery mq;
+
+ for(unsigned int k=0; k<m.size(); k++){
+ ++msg_id;
+ mpi_query q;
+ q.msg_id = msg_id;
+
+ for(unsigned int i=0; i<m[k]->markers.size(); i++){
+ q.marker_idx.push_back(marker_idx_map[m[k]->markers[i]]);
+ }
+ for(unsigned int i=0; i<m[k]->traits.size(); i++){
+ q.trait_idx.push_back(trait_idx_map[m[k]->traits[i]]);
+ }
+
+ q.categorical = m[k]->categorical;
+ q.permute = m[k]->permute;
+
+ mq.all_queries.push_back(q);
+ work_map[msg_id] = m[k];
+ }
+
+ mpi_envelope me;
+ me.msg = &mq;
+ retval = MPIUtils::pack(me);
+
+ return retval;
+}
+
+void Regression::initMPI(){
+
+ MPIStartBroadcast();
+ mpi_envelope me;
+
+ // OK, now we're ready to do some broadcasting. First, let's send our markers!
+ // send all the covariate traits
+
+ if(typeid(*mgp) != typeid(TargetedModelGenerator)){
+ DataSet::const_marker_iterator mi = ds_ptr->beginMarker();
+ while(mi != ds_ptr->endMarker()){
+ MPIBroadcastMarker(*mi);
+ ++mi;
+ }
+
+ DataSet::const_trait_iterator ti = ds_ptr->beginTrait();
+ while(ti != ds_ptr->endTrait()){
+ MPIBroadcastTrait(*ti);
+ ++ti;
+ }
+
+ } else {
+ // send the covariate traits
+ for(set<string>::const_iterator ci = covar_names.begin(); ci != covar_names.end(); ci++){
+ MPIBroadcastTrait(*ci);
+ }
+ for(set<string>::const_iterator ci = const_covar_names.begin(); ci != const_covar_names.end(); ci++){
+ MPIBroadcastTrait(*ci);
+ }
+
+ // here, we'll just send only the data we need
+ Model* m;
+ while( (m = mgp->next()) ){
+ for(unsigned int i=0; i<m->markers.size(); i++){
+ if(marker_idx_map.count(m->markers[i]) == 0){
+ MPIBroadcastMarker(m->markers[i]);
+ }
+ }
+
+ for(unsigned int i=0; i<m->traits.size(); i++){
+ if(trait_idx_map.count(m->traits[i]) == 0){
+ MPIBroadcastTrait(m->traits[i]);
+ }
+ }
+ }
+ mgp->reset();
+ }
+
+ // Now, the list of covariates
+ mpi_covars mc;
+ mc.const_covars.reserve(const_covar_names.size());
+ mc.covars.reserve(covar_names.size());
+
+ for(set<string>::const_iterator ci = covar_names.begin(); ci != covar_names.end(); ci++){
+ mc.covars.push_back(trait_idx_map[*ci]);
+ }
+ for(set<string>::const_iterator cci = const_covar_names.begin(); cci != const_covar_names.end(); cci++){
+ mc.const_covars.push_back(trait_idx_map[*cci]);
+ }
+ me.msg = &mc;
+ MPIBroadcast(MPIUtils::pack(me));
+
+ // And the extra data
+ mpi_extra m_ed;
+ m_ed.class_data = getExtraData();
+ me.msg = &m_ed;
+ MPIBroadcast(MPIUtils::pack(me));
+
+ // and the permutations
+ if(n_perms != 0){
+ mpi_permu mperm;
+ mperm.n_permu = n_perms;
+ mperm.permu_size = _pheno.size();
+ mperm.rng_seed = permu_seed;
+ me.msg = &mperm;
+ MPIBroadcast(MPIUtils::pack(me));
+ }
+
+ MPIBroadcastPheno();
+
+ MPIStopBroadcast();
+
+}
+
+void Regression::MPIBroadcastTrait(const string& t){
+ trait_idx_map.insert( make_pair(t, trait_idx_map.size()) );
+
+ mpi_trait mt;
+ mt.data.reserve(_pheno.size());
+ DataSet::const_sample_iterator si = ds_ptr->beginSample();
+ while(si != ds_ptr->endSample()){
+ mt.data.push_back(ds_ptr->getTrait(t, *si));
+ ++si;
+ }
+
+ mt.description = t;
+
+ mpi_envelope me;
+ me.msg = &mt;
+ MPIBroadcast(MPIUtils::pack(me));
+
+}
+
+void Regression::MPIBroadcastMarker(const Marker* m){
+ marker_idx_map.insert( make_pair(m, marker_idx_map.size()) );
+
+ mpi_marker mm;
+ // initialize everything to "missing"
+ mm.data.resize(2*_pheno.size(), true);
+ unsigned int pers_index = 0;
+
+ DataSet::const_sample_iterator si = ds_ptr->beginSample();
+ unsigned char geno;
+ while(si != ds_ptr->endSample()){
+ geno = (*si)->getAdditiveGeno(*m);
+ if(geno != Sample::missing_allele){
+ mm.data[2*pers_index] = geno & 2;
+ mm.data[2*pers_index + 1] = geno & 1;
+ }
+ ++pers_index;
+ ++si;
+ }
+
+ // note that the description is everything BUT the MAF!
+ mm.description = getMarkerDesc(m, sep);
+
+ mpi_envelope me;
+ me.msg = &mm;
+ MPIBroadcast(MPIUtils::pack(me));
+}
+
+string Regression::getMarkerDesc(const Marker* m, const std::string& sep_str){
+ stringstream ss;
+ ss << m->getID() << sep_str << m->getChromStr() << ":"
+ << m->getLoc() << sep_str << m->getAltAllele() << ":";
+
+ return ss.str();
+}
+
+
+void Regression::MPIBroadcast(pair<unsigned int, const char*> msg) const{
+#ifdef HAVE_CXX_MPI
+// MPI_Barrier(MPI_COMM_WORLD);
+ MPI_Bcast(&msg.first, 1, MPI_UNSIGNED, 0, MPI_COMM_WORLD);
+ MPI_Bcast(const_cast<char*>(msg.second), msg.first, MPI_CHAR, 0, MPI_COMM_WORLD);
+#endif
+ delete[] msg.second;
+}
+
+void Regression::MPIBroadcastPheno(){
+ // Now, send the first phenotype
+ mpi_pheno mp;
+ mp._pheno = _pheno;
+ mp._name = *output_itr;
+ mpi_envelope me;
+ me.msg = ∓
+ MPIBroadcast(MPIUtils::pack(me));
+}
+
+void Regression::MPIBroadcastWeights() const{
+
+ MPIStartBroadcast();
+
+ // generate a vector of weights (indexed by the marker_idx_map)
+ mpi_weight mw;
+ mw._wt.resize(marker_idx_map.size(), 0.5);
+ map<const Marker*, unsigned int>::const_iterator idx_itr = marker_idx_map.end();
+ for(map<const Marker*, float>::const_iterator witr = categ_weight.begin(); witr != categ_weight.end(); witr++){
+ if( (idx_itr = marker_idx_map.find(witr->first)) != marker_idx_map.end()){
+ mw._wt[idx_itr->second] = witr->second;
+ }
+ }
+
+ mpi_envelope me;
+ me.msg = &mw;
+ MPIBroadcast(MPIUtils::pack(me));
+
+ MPIStopBroadcast();
+
+}
+
+void Regression::MPIStopBroadcast() const{
+
+#ifdef HAVE_CXX_MPI
+ // send a "done broadcasting signal
+ unsigned int flag = 0;
+// MPI_Barrier(MPI_COMM_WORLD);
+ MPI_Bcast(&flag, 1, MPI_UNSIGNED, 0, MPI_COMM_WORLD);
+#endif
+}
+
+void Regression::runWeights(){
+
+ if(_targeted){
+ Model* m = 0;
+ // NOTE: I could do this via recursion, but I might get a crazy big stack!
+ while( (m = mgp->next()) ){
+ for(unsigned int i=0; i<m->markers.size(); i++){
+
+ Model* pm = 0;
+ _categ_mutex.lock();
+ if(categ_weight.find(m->markers[i]) == categ_weight.end()){
+ pm = new Model;
+ pm->markers.push_back(m->markers[i]);
+ pm->categorical = true;
+ pm->permute = false;
+ if(pre_lock_set.count(pm->getID()) == 0){
+ pre_lock_set.insert(pm->getID());
+ }else{
+ delete pm;
+ pm = 0;
+ }
+ }
+ _categ_mutex.unlock();
+
+ if(pm){
+ Result* r = run(*pm);
+
+ addWeight(pm->markers[0], r);
+
+ _categ_mutex.lock();
+ pre_lock_set.erase(pm->getID());
+ _categ_mutex.unlock();
+
+ if(r){
+ delete r;
+ }
+ delete pm;
+ }
+ }
+ } // end iterate over models
+
+ } else {
+ // Here, let's just iterate through the markers and send them!
+ const Marker* curr_m;
+ _marker_itr_mutex.lock();
+ while( (*wt_marker_itr) != ds_ptr->endMarker()){
+ curr_m = **wt_marker_itr;
+ ++(*wt_marker_itr);
+ _marker_itr_mutex.unlock();
+
+ Model mod;
+ mod.markers.push_back(curr_m);
+ mod.categorical = true;
+ mod.permute = false;
+
+ Result* r = run(mod);
+
+ addWeight(curr_m, r);
+
+ if(r){
+ delete r;
+ }
+
+ _marker_itr_mutex.lock();
+ }
+ _marker_itr_mutex.unlock();
+ }
+}
+
+
+void Regression::MPIStartBroadcast() const{
+
+ // OK, let's broadcast all of our data, so send the "let's broadcast" signal
+ mpi_bcast signal;
+ mpi_envelope me;
+ me.msg = &signal;
+ pair<unsigned int, const char*> msg = MPIUtils::pack(me);
+ sendAll(msg.first, msg.second);
+ delete[] msg.second;
+}
+
+const Regression::Model* Regression::getNextMPIModel(){
+ const Model* m = 0;
+
+ if(!model_queue.empty()){
+ m = model_queue.front();
+ model_queue.pop_front();
+
+ } else if(!weight_complete){
+ // If we have not generated all weights, let's find what we need to
+ if(_targeted){
+ // NOTE: I could do this via recursion, but I might get a crazy big stack!
+ while(model_queue.empty() && (m = mgp->next())){
+ for(unsigned int i=0; i<m->markers.size(); i++){
+ _categ_mutex.lock();
+ if(categ_weight.find(m->markers[i]) == categ_weight.end()){
+ Model *pm = new Model;
+ pm->markers.push_back(m->markers[i]);
+ pm->categorical = true;
+ pm->permute = false;
+ if(pre_lock_set.count(pm->getID()) == 0){
+ pre_lock_set.insert(pm->getID());
+ model_queue.push_back(pm);
+ }
+ }
+ _categ_mutex.unlock();
+ }
+ }
+
+ } else {
+ // Here, let's just iterate through the markers and send them!
+ const Marker* curr_m;
+ _marker_itr_mutex.lock();
+ if(*wt_marker_itr != ds_ptr->endMarker()){
+ curr_m = **wt_marker_itr;
+ ++(*wt_marker_itr);
+
+ _marker_itr_mutex.unlock();
+
+ Model* pm = new Model;
+ pm->markers.push_back(curr_m);
+ pm->categorical = true;
+ pm->permute = false;
+ model_queue.push_back(pm);
+ } else {
+ // I need to unlock the marker iterator, silly!
+ _marker_itr_mutex.unlock();
+ }
+ }
+
+ // now recurse and get the next model to send!
+ // It will do one of 2 things:
+ // 1) pluck off the model queue
+ // 2) send a "Real" model (from the model generator)
+ if(!model_queue.empty()) {
+ m = getNextMPIModel();
+ } else {
+ m = 0;
+ }
+
+ } else{
+ m = mgp->next();
+ }
+ // empty else statement means that there is really NOTHING else to run!
+
+ return m;
+}
+
+
+// MPI stuff here!
+pair<unsigned int, const char*> Regression::nextQuery(){
+ pair<unsigned int, const char*> retval(0,0);
+
+ // check to see if we need to start worker threads
+ if(start_regular_workers){
+ // Only start n_threads - 1 new threads!
+ // (keep one thread for processing results from slaves)
+ for(unsigned int i=0; i<n_threads - 1; i++){
+ boost::function<void()> f = boost::bind(&Regression::start, this);
+ master_workers.run(f);
+ }
+
+ start_regular_workers = false;
+ } else if (start_weight_workers){
+ for(unsigned int i=0; i<n_threads - 1; i++){
+ boost::function<void()> f = boost::bind(&Regression::runWeights, this);
+ master_workers.run(f);
+ }
+
+ start_weight_workers = false;
+ }
+
+ vector<const Model*> all_models;
+ const Model* m;
+ if(MPIUtils::threadsafe_mpi){
+ m = getNextMPIModel();
+ } else {
+ m = getNextMPIModel();
+ unsigned int i=0;
+ while(i < n_threads - 1 && m != 0){
+ all_models.push_back(m);
+ i++;
+ m = getNextMPIModel();
+ }
+ if(m != 0){
+ all_models.push_back(m);
+ }
+ if(m == 0 && all_models.size() != 0){
+ m = all_models[0];
+ }
+ }
+
+ if(m != 0){
+ if(MPIUtils::threadsafe_mpi){
+ retval = generateMsg(*m);
+ }else{
+ retval = generateMultiMsg(all_models);
+ }
+ } else {
+ // If I am here, I think that I can't generate more models, so let's see why!
+ if(!weight_complete){
+ // If we haven't completed the weights yet..
+
+ // If I am here, we have no more models to generate, so please
+ // wait for completion, send the weights, reset the model generator
+ // and set the weight_complete flag to true
+
+ collect();
+
+ // wait for worker threads to complete
+ master_workers.join_all();
+
+ weight_complete = true;
+ start_regular_workers = true;
+ MPIBroadcastWeights();
+ mgp->reset();
+ } else if(show_uni && !work_map.empty()){
+ // If I'm here, I might generate some post-locking models, so
+ // send a "please wait" message
+ retval = pair<unsigned int, const char*>(work_map.size(), 0);
+ } else if(output_itr != outcome_names.end()){
+
+ // wait for all currently processing threads to complete before we
+ // mess with the phenotypes
+ master_workers.join_all();
+
+ // At this point, I am the only working thread on the master node!
+
+ // Note the empty loop here - we will check and make sure that the
+ // phenotype is good and continue until we either run out or find
+ // a good one
+ while(++output_itr != outcome_names.end() && !resetPheno(*output_itr));
+
+ // If I'm here, I have another phenotype to run!
+ if(output_itr != outcome_names.end()){
+
+ collect();
+
+ // At this point, I am the only thread AT ALL!
+
+ MPIStartBroadcast();
+ MPIBroadcastPheno();
+ MPIStopBroadcast();
+ mgp->reset();
+
+ // Tell me which workers to start!
+ start_regular_workers = weight_complete = encoding != Encoding::WEIGHTED;
+ start_weight_workers = !start_regular_workers;
+ if(start_weight_workers && !_targeted){
+ _marker_itr_mutex.lock();
+
+ delete wt_marker_itr;
+ wt_marker_itr = new DataSet::const_marker_iterator(ds_ptr->beginMarker());
+ _marker_itr_mutex.unlock();
+ }
+
+ // recurse to get the next model
+ retval = nextQuery();
+ }
+ }
+ }
+
+
+ return retval;
+}
+
+void Regression::processResponse(unsigned int bufsz, const char* in_buf){
+ // Turn this into a msg_id + Result
+ mpi_response resp;
+ MPIUtils::unpack(bufsz, in_buf, resp);
+
+ for(unsigned int msg_result = 0; msg_result< resp.results.size(); msg_result++){
+
+ unsigned int msg = resp.results[msg_result].first;
+ Result* r = resp.results[msg_result].second;
+
+ // Get the Model associated with the message
+ const Model* m = 0;
+ map<unsigned int, const Model*>::iterator witr = work_map.find(msg);
+ if(witr != work_map.end()){
+ m = witr->second;
+ work_map.erase(witr);
+ }
+
+ bool is_result = (r != 0);
+
+ _categ_mutex.lock();
+ set<string>::iterator pl_itr = pre_lock_set.find(m->getID());
+ if(pl_itr != pre_lock_set.end()){
+ is_result = false;
+ pre_lock_set.erase(pl_itr);
+ }
+ _categ_mutex.unlock();
+
+ // if this is found in the lock map, it's not a result!
+ pair<multimap<string, int*>::iterator, multimap<string, int*>::iterator> lm_range = work_lock_map.equal_range(m->getID());
+ is_result = is_result && (lm_range.first == lm_range.second);
+ // decrement any locks we found!
+ while(lm_range.first != lm_range.second){
+ --(*((lm_range.first)->second));
+ work_lock_map.erase(lm_range.first++);
+ }
+
+ // if this was a categorical test, add it as appropriate:
+ if(m->categorical && m->markers.size() == 1 && m->traits.size() == 0){
+ addWeight(m->markers[0], r);
+ is_result = false;
+ delete r;
+ r = 0;
+ } else if (!is_result && show_uni && m->markers.size() + m->traits.size() == 1){
+ // if this is true, then the result should be added to the univariate
+ // results
+ if(m->markers.size() == 1){
+ addUnivar(m->markers[0], r);
+ } else {
+ addUnivar(m->traits[0], r);
+ }
+ }
+
+ // Also, see if anything needs to be placed in the result list
+ for(map<Result*, int*>::iterator it = post_lock_map.begin(); it != post_lock_map.end(); ){
+ if(*(it->second) == 0){
+ delete it->second;
+ if(show_uni){
+ map<Result*, const Model*>::iterator plm_itr = post_lock_models.find(it->first);
+ if(plm_itr != post_lock_models.end()){
+ //this really should always be the case!! If not, we had
+ // something very bad happen
+ addUnivariate(*(it->first), *(plm_itr->second));
+ // make sure to delete the model before erasing it from
+ // the post_lock_model map!
+ delete plm_itr->second;
+ post_lock_models.erase(plm_itr);
+ } else {
+ Logger::log_err("WARNING: Unexpected error in displaying univariate models using MPI.");
+ }
+ }
+ addResult(it->first);
+ post_lock_map.erase(it++);
+ } else {
+ ++it;
+ }
+ }
+
+ vector<Model*> pl_needed;
+ // check for post-locks needed, and add them to the queue
+ if(show_uni && m->markers.size() + m->traits.size() > 1){
+ Model *uni_m;
+ for (unsigned int i = 0; i < m->markers.size(); i++) {
+ _univar_mmutex.lock();
+ map<const Marker*, Result*>::const_iterator m_itr =
+ _marker_uni_result.find(m->markers[i]);
+ // If this is the case, we have not seen this marker before
+ if (m_itr == _marker_uni_result.end()) {
+ uni_m = new Model();
+ uni_m->markers.push_back(m->markers[i]);
+ uni_m->permute = false;
+ pl_needed.push_back(uni_m);
+ }
+ _univar_mmutex.unlock();
+ }
+
+ for (unsigned int i = 0; i < m->traits.size(); i++) {
+ _univar_tmutex.lock();
+ map<string, Result*>::const_iterator t_itr =
+ _trait_uni_result.find(m->traits[i]);
+ // If this is the case, we have not seen this marker before
+ if (t_itr == _trait_uni_result.end()) {
+ uni_m = new Model();
+ uni_m->traits.push_back(m->traits[i]);
+ uni_m->permute = false;
+ pl_needed.push_back(uni_m);
+ }
+ _univar_tmutex.unlock();
+ }
+
+ // in this case, it's safe to add the univariate results, b/c we
+ // have already calculated them!
+ if(pl_needed.size() == 0){
+ addUnivariate(*r, *m);
+ }
+ }
+
+ int* val_ptr = 0;
+ for(unsigned int i=0; i<pl_needed.size(); i++){
+ if(!val_ptr){
+ val_ptr = new int(pl_needed.size());
+ post_lock_map.insert(make_pair(r, val_ptr));
+ post_lock_models.insert(make_pair(r,m));
+ }
+ // I know that the post-lock models can't need a pre-lock, phew!
+ Model* plmod = pl_needed[i];
+ work_lock_map.insert(make_pair(plmod->getID(), val_ptr));
+ // Only add this to the model once, please!
+ if(work_lock_map.count(plmod->getID()) == 1){
+ model_queue.push_back(plmod);
+ } else {
+ delete plmod;
+ }
+ // if I needed post-locks, I'm not ready to push the result!
+ is_result = false;
+ }
+
+
+ if(is_result){
+ //is a result and I don't need any post-locks, add the result to the list
+ addResult(r);
+ }
+
+ // now we're done with this model, so delete it, but only if we don't need
+ // it later!
+ if(pl_needed.size() == 0){
+ delete m;
+ }
+ }
+}
+
+void Regression::processBroadcast(){
+ // I know I'm going to get a broadcast message here, but first I'm going
+ // to receive the size
+
+ // We're probably going to modify some of our static data, so let's
+ // get a "write lock" set up.
+
+ boost::unique_lock<boost::shared_mutex> w_lock(_mpi_mutex);
+
+#ifdef HAVE_CXX_MPI
+ unsigned int bcast_sz = 0;
+ char* buf = 0;
+
+// MPI_Barrier(MPI_COMM_WORLD);
+ MPI_Bcast(&bcast_sz, 1, MPI_UNSIGNED, 0, MPI_COMM_WORLD);
+ while(bcast_sz > 0){
+ buf = new char[bcast_sz];
+ MPI_Bcast(buf, bcast_sz, MPI_CHAR, 0, MPI_COMM_WORLD);
+ mpi_envelope env;
+ MPIUtils::unpack(bcast_sz, buf, env);
+ delete[] buf;
+
+ if(typeid(*env.msg) == typeid(mpi_pheno)){
+ mpi_pheno* mph = dynamic_cast<mpi_pheno*>(env.msg);
+ // reset the phenotype here
+ _curr_pheno.clear();
+ _curr_pheno = mph->_pheno;
+ _curr_pheno_name = mph->_name;
+ } else if(typeid(*env.msg) == typeid(mpi_marker)) {
+ mpi_marker* mm = dynamic_cast<mpi_marker*>(env.msg);
+ _marker_data.push_back(make_pair(mm->data, 0.5f));
+ _marker_desc.push_back(mm->description);
+ } else if(typeid(*env.msg) == typeid(mpi_trait)) {
+ mpi_trait* mt = dynamic_cast<mpi_trait*>(env.msg);
+ _trait_data.push_back(mt->data);
+ _trait_desc.push_back(mt->description);
+ } else if(typeid(*env.msg) == typeid(mpi_weight)) {
+ mpi_weight* mw = dynamic_cast<mpi_weight*>(env.msg);
+ // set up weight mapping here
+ for(unsigned int i=0; i<mw->_wt.size(); i++) {
+ _marker_data[i].second = mw->_wt[i];
+ }
+ } else if(typeid(*env.msg) == typeid(mpi_permu)) {
+ mpi_permu* mp = dynamic_cast<mpi_permu*>(env.msg);
+ initPermutations(mp->n_permu, mp->permu_size, _permu_data, mp->rng_seed);
+ } else if(typeid(*env.msg) == typeid(mpi_covars)) {
+ mpi_covars* mc = dynamic_cast<mpi_covars*>(env.msg);
+ // set up the covariates here
+ // NOTE: the traits MUST be loaded first!
+ n_const_covars = mc->const_covars.size();
+ for(unsigned int i=0; i<mc->covars.size(); i++) {
+ _covar_data.push_back(_trait_data[mc->covars[i]]);
+ }
+ for(unsigned int i=0; i<mc->const_covars.size(); i++) {
+ _covar_data.push_back(_trait_data[mc->const_covars[i]]);
+ }
+
+ } else if(typeid(*env.msg) == typeid(mpi_extra)) {
+ mpi_extra* me = dynamic_cast<mpi_extra*>(env.msg);
+ _extra_data = me->class_data;
+ }
+
+ if(env.msg){
+ delete env.msg;
+ }
+
+ MPI_Bcast(&bcast_sz, 1, MPI_UNSIGNED, 0, MPI_COMM_WORLD);
+
+ }
+
+#endif
+
+ // And we're done, so go ahead and release our lock
+ w_lock.unlock();
+
+}
+
+Regression::Result* Regression::runMPIModel(const mpi_query* mq, calc_fn& func){
+ // Make sure to get a "read lock" on the data
+ boost::shared_lock<boost::shared_mutex> r_lock(_mpi_mutex);
+
+ // run a query (model) here
+ calc_matrix* calc_mat = getCalcMatrix(*mq, 0);
+
+ Result* r = 0;
+
+ if(calc_mat){
+ r = func(calc_mat->outcome, calc_mat->data, calc_mat->n_cols,
+ calc_mat->n_sampl, 0, calc_mat->red_vars, true, _extra_data);
+
+ if(mq->permute && r && _permu_data.size()){
+ // If I have permutations, I probably want to use them!!
+ genPermuData perm_fn = boost::bind(&Regression::getCalcMatrix, boost::cref(*mq), _1);
+ runPermutations(r, perm_fn, _permu_data, func, _extra_data);
+ }
+
+ if(r){
+ r->prefix = _curr_pheno_name + _extra_data->sep + calc_mat->prefix + r->prefix;
+ }
+ for(unsigned int i=0; i<r->sig_perms.size(); i++){
+ r->sig_perms[i]->prefix = _curr_pheno_name + _extra_data->sep + r->sig_perms[i]->prefix;
+ }
+ }
+
+ r_lock.unlock();
+
+ if(calc_mat){
+ delete calc_mat;
+ }
+
+ return r;
+
+}
+
+void Regression::runMPIQuerySingleThread(const mpi_query* mq, deque<pair<unsigned int, Result*> >& output_queue, boost::mutex& result_mutex, calc_fn& func){
+ Result* r = runMPIModel(mq, func);
+
+ result_mutex.lock();
+ output_queue.push_back(make_pair(mq->msg_id, r));
+ result_mutex.unlock();
+}
+
+void Regression::runMPIQueryMultiThread(const mpi_query* mq, deque<pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv, calc_fn& func){
+
+ Result* r = runMPIModel(mq, func);
+
+
+ mpi_response resp;
+ resp.results.push_back(make_pair(mq->msg_id, r));
+
+ boost::unique_lock<boost::mutex> cv_lock(result_mutex);
+ result_queue.push_back(MPIUtils::pack(resp));
+ cv.notify_one();
+ cv_lock.unlock();
+
+ if(r){
+ delete r;
+ }
+
+ delete mq;
+}
+
+
+void Regression::calculate_MPI(unsigned int bufsz, const char* in_buf, deque<pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv, calc_fn& func){
+
+
+ if(bufsz == 0){
+ // if we got a message of size 0, we just want to wait for everything to finish
+ _mpi_threads.join_all();
+ }else{
+ mpi_envelope env;
+ MPIUtils::unpack(bufsz, in_buf, env);
+
+ pair<unsigned int, const char*> retval(0,0);
+
+ if(typeid(*env.msg) == typeid(mpi_query)){
+ boost::function<void()> f = boost::bind(&runMPIQueryMultiThread, dynamic_cast<mpi_query*>(env.msg), boost::ref(result_queue), boost::ref(result_mutex), boost::ref(cv), boost::ref(func));
+ _mpi_threads.run(f);
+ } else if(typeid(*env.msg) == typeid(mpi_multiquery)){
+ mpi_multiquery* mmq = dynamic_cast<mpi_multiquery*>(env.msg);
+ deque<pair<unsigned int, Result*> > out_queue;
+ for(unsigned int i=0; i<mmq->all_queries.size(); i++){
+ boost::function<void()> f = boost::bind(&runMPIQuerySingleThread, &mmq->all_queries[i], boost::ref(out_queue), boost::ref(result_mutex), boost::ref(func));
+ _mpi_threads.run(f);
+ }
+ // this is so ridiculously ineffecient it's not even funny!
+ _mpi_threads.join_all();
+ // now put everything in a single output
+ result_mutex.lock();
+ mpi_response mr;
+ for(unsigned int i=0; i<out_queue.size();i++){
+ mr.results.push_back(out_queue[i]);
+ }
+ result_queue.push_back(MPIUtils::pack(mr));
+ for(unsigned int i=0; i<out_queue.size();i++){
+ delete out_queue[i].second;
+ }
+ result_mutex.unlock();
+ delete mmq;
+ } else {
+ if(typeid(*env.msg) == typeid(mpi_bcast)){
+ // OK, I need to prepare for broadcast here!
+ processBroadcast();
+ } else if(typeid(*env.msg) == typeid(mpi_clean)){
+
+ // Get a "write lock" on our data, please!
+ boost::unique_lock<boost::shared_mutex> w_lock(_mpi_mutex);
+
+ // Clean up all those static variables!
+ _marker_data.clear();
+ _marker_desc.clear();
+ _trait_desc.clear();
+ _trait_data.clear();
+ _covar_data.clear();
+
+ for(deque<gsl_permutation*>::const_iterator pitr=_permu_data.begin(); pitr != _permu_data.end(); pitr++){
+ gsl_permutation_free(*pitr);
+ }
+ _permu_data.clear();
+ _curr_pheno.resize(0);
+ if(_extra_data){
+ delete _extra_data;
+ _extra_data = 0;
+ }
+
+ w_lock.unlock();
+ }
+
+ // NOTE: DO NOT delete the message if we pass it to a thread!!
+ if(env.msg){
+ delete env.msg;
+ }
+ }
+ }
+
+}
+
+
+
+//###########################################################################
+// Begin Model Generator functions
+//###########################################################################
+
+Regression::Model* Regression::TargetedModelGenerator::nextModel() {
+
+ Model* m = 0;
+ // models are given one per line here
+ while(_mitr != _mend && (m == 0 || (m->markers.size() == 0 && m->traits.size() == 0))){
+ m = Regression::parseModelStr(*_mitr, _ds);
+ if(m->markers.size() == 0 && m->traits.size() == 0){
+ Logger::log_err("WARNING: Model '" + *_mitr + "' has elements not in the dataset, ignoring");
+ delete m;
+ m = 0;
+ }
+ ++_mitr;
+ }
+
+ return m;
+}
+
+void Regression::TargetedModelGenerator::resetGenerator() {
+ _mitr = _mbegin;
+}
+
+Regression::Model* Regression::OneSidedModelGenerator::nextModel() {
+
+ Model* m = 0;
+
+ // We want Env vars
+ if (_traits) {
+ // we want exhaustive EnvxEnv
+ if (_nomarker) {
+ if (_ti2 == _tall_set.end() && _titr != _t_set.end()) {
+ _t_processed.insert(*(_titr++));
+ if (_titr != _t_set.end()) {
+ _ti2 = _tall_set.begin();
+ }
+ }
+
+ // If ti2 == end ==> _titr == end
+ if (_ti2 != _tall_set.end()) {
+ if (*_titr != *_ti2 && _t_processed.find(*_ti2) == _t_processed.end()) {
+ m = new Model();
+ m->traits.push_back(*_titr);
+ m->traits.push_back(*_ti2);
+ ++_ti2;
+ } else {
+ //If we're here, we have already seen this model!
+ ++_ti2;
+ m = next();
+ }
+ }
+
+ // We want exhaustive SNPxSNPxEnv models
+ } else {
+ // A little change from the BasicModelGenerator - here we
+ // want to iterate over mi1, then mi2, then traits
+ // (Basic iterated over traits, then mi1, then mi2)
+
+ if (_titr == _t_set.end()) {
+ // reset the traits and increment mi2
+ if (_mi2 != _ds.endMarker() && ++_mi2 == _ds.endMarker()) {
+ _titr = _t_set.begin();
+ // OK, increment mi1 and add it to the "processed" list
+ if (_mi1 != _m_set.end()) {
+ _m_processed.insert(*(_mi1++));
+
+ if (_mi1 != _m_set.end()) {
+ _mi2 = _ds.beginMarker();
+ } else {
+ // If I'm here, we're done iterating!
+ _titr = _t_set.end();
+ }
+ }
+ }
+ }
+
+ if (_mi1 != _m_set.end()) {
+ if (*_mi1 != *_mi2 && _m_processed.find(*_mi2) == _m_processed.end()) {
+ m = new Model();
+ m->markers.push_back(*_mi1);
+ m->markers.push_back(*_mi2);
+ m->traits.push_back(*_titr);
+ ++_mi2;
+ } else {
+ ++_mi2;
+ m = next();
+ }
+
+ }
+ }
+ // OK, we just want SNPxSNP models
+ } else {
+
+ if (_mi2 == _ds.endMarker() && _mi1 != _m_set.end()) {
+ _m_processed.insert(*(_mi1++));
+ if(_mi1 != _m_set.end()){
+ _mi2 = _ds.beginMarker();
+ }
+ }
+
+ if (_mi2 != _ds.beginMarker()) {
+ if(*_mi2 != *_mi1 && _m_processed.find(*_mi2) == _m_processed.end()){
+ m = new Model();
+ m->markers.push_back(*_mi1);
+ m->markers.push_back(*_mi2);
+ ++_mi2;
+ } else {
+ ++_mi2;
+ m = next();
+ }
+ }
+
+ }
+
+ // NOTE: m == 0 if no more models can be generated!
+ // IN targeted mode, m != 0, but m->markers.size() == 0 && m->traits.size() == 0 in the case of a "bad" model
+ return m;
+
+}
+
+void Regression::OneSidedModelGenerator::resetGenerator() {
+ //_m_set(m_set),
+ // _t_set(trait), _tall_set(all_traits),
+ _mi1 = _m_set.begin();
+ _mi2 = _ds.beginMarker();
+ _titr = _t_set.begin();
+ _ti2 = _tall_set.begin();
+}
+
+
+}
+}
diff --git a/method_lib/analysis/Regression.h b/method_lib/analysis/Regression.h
new file mode 100644
index 0000000..5fe17fc
--- /dev/null
+++ b/method_lib/analysis/Regression.h
@@ -0,0 +1,1147 @@
+/*
+ * Regression.h
+ *
+ * Created on: Jan 8, 2014
+ * Author: jrw32
+ */
+
+#ifndef METHODS_ANALYSIS_REGRESSION_H
+#define METHODS_ANALYSIS_REGRESSION_H
+
+#include <set>
+#include <vector>
+#include <string>
+#include <iostream>
+#include <fstream>
+#include <map>
+#include <cstdio>
+#include <deque>
+#include <utility>
+#include <limits>
+#include <queue>
+
+#include <boost/program_options.hpp>
+#include <boost/thread.hpp>
+#include <boost/dynamic_bitset.hpp>
+#include <boost/multi_array.hpp>
+#include <boost/function.hpp>
+
+#include <boost/serialization/binary_object.hpp>
+#include <boost/serialization/string.hpp>
+#include <boost/serialization/vector.hpp>
+#include <boost/serialization/utility.hpp>
+#include "util/MPIUtils.h"
+
+#define BOOST_IOSTREAMS_USE_DEPRECATED
+#include <boost/iostreams/stream.hpp>
+#include <boost/iostreams/device/file_descriptor.hpp>
+
+#include <gsl/gsl_matrix.h>
+#include <gsl/gsl_rng.h>
+#include <gsl/gsl_randist.h>
+#include <gsl/gsl_permutation.h>
+
+#include "Correction.h"
+#include "Encoding.h"
+#include "MPIProcess.h"
+
+#include "data/DataSet.h"
+#include "util/ThreadPool.h"
+
+namespace PLATO{
+
+namespace Data{
+class Marker;
+}
+
+namespace Analysis{
+
+/*!
+ * \brief A base class for any regression analysis - really any statistical test
+ */
+class Regression : public virtual MPIProcess {
+
+public:
+ class ExtraData{
+ public:
+ bool interactions;
+ bool run_full_permu;
+ Analysis::EncodingModel encoding;
+ unsigned int const_covars;
+ unsigned int base_covars;
+ float permu_thresh;
+ unsigned int n_extra_df_col;
+ unsigned int* extra_df_col;
+ std::string sep;
+
+
+ ExtraData(unsigned int n=0) : base_covars(0), n_extra_df_col(n), extra_df_col(0) {
+ if(n>0){
+ extra_df_col = new unsigned int[n];
+ }
+ }
+
+ ExtraData(const ExtraData& o){
+ interactions = o.interactions;
+ run_full_permu = o.run_full_permu;
+ const_covars = o.const_covars;
+ base_covars = o.base_covars;
+ sep = o.sep;
+ encoding = o.encoding;
+ permu_thresh = o.permu_thresh;
+ n_extra_df_col = o.n_extra_df_col;
+ extra_df_col = new unsigned int[n_extra_df_col];
+ std::memcpy(extra_df_col,o.extra_df_col,sizeof(unsigned int)*n_extra_df_col);
+ }
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & interactions;
+ ar & run_full_permu;
+ ar & const_covars;
+ ar & base_covars;
+ ar & sep;
+ ar & encoding;
+ ar & permu_thresh;
+ ar & n_extra_df_col;
+ if(Archive::is_loading::value){
+ extra_df_col = new unsigned int[n_extra_df_col];
+ }
+
+ ar & boost::serialization::make_binary_object(extra_df_col, n_extra_df_col * sizeof(unsigned int));
+ }
+
+ virtual ~ExtraData(){
+ if(extra_df_col){
+ delete[] extra_df_col;
+ }
+ }
+ };
+
+protected:
+ /*!
+ * \brief A class that holds all data needed to process a single regression
+ */
+ class Model{
+ public:
+ Model() : categorical(false), permute(true), id(""), n_vars(0){}
+ Model(const std::vector<std::string>& tv) : traits(tv) {}
+
+ std::string getID() const{
+ if(n_vars != markers.size() + traits.size() || id.empty()){
+ id = "";
+ n_vars = 0;
+ for(unsigned int i=0; i<markers.size(); i++){
+ id += (++n_vars > 1 ? " " : "") + markers[i]->getID();
+ }
+ for(unsigned int i=0; i<traits.size(); i++){
+ id += (++n_vars > 1 ? " " : "") + traits[i];
+ }
+
+ if(categorical){
+ id += "_categ";
+ }
+ }
+
+ return id;
+ }
+
+ std::vector<const PLATO::Data::Marker*> markers;
+ std::vector<std::string> traits;
+ bool categorical;
+ bool permute;
+
+ private:
+ mutable std::string id;
+ mutable unsigned int n_vars;
+
+ };
+
+ class ModelGenerator{
+ public:
+
+ // use this for exhaustive
+ ModelGenerator(const Data::DataSet& ds) : _ds(ds) {}
+ virtual ~ModelGenerator() {}
+ Model* next() {
+ _mg_mutex.lock();
+ Model* m = nextModel();
+ _mg_mutex.unlock();
+ return m;
+ }
+ void reset(){
+ _mg_mutex.lock();
+ resetGenerator();
+ _mg_mutex.unlock();
+ }
+
+ protected:
+ virtual Model* nextModel() = 0;
+ virtual void resetGenerator() = 0;
+
+ const Data::DataSet& _ds;
+
+ private:
+ boost::mutex _mg_mutex;
+ };
+
+ template <class M_iter>
+ class BasicModelGenerator : public ModelGenerator{
+
+ public:
+ BasicModelGenerator(const PLATO::Data::DataSet& ds,
+ const M_iter& begin, const M_iter& end,
+ const std::set<std::string>& trait, bool pw,
+ bool nomarker) : ModelGenerator(ds),
+ _mbegin(begin), _mi1(begin), _mi2(begin), _mend(end), _tbegin(trait.begin()),
+ _titr(trait.begin()), _tend(trait.end()), _ti2(trait.begin()),
+ _pairwise(pw), _traits(trait.size()> 0), _nomarker(nomarker) {
+
+ if(_mi2 != _mend){
+ ++_mi2;
+ }
+
+ if(_ti2 != _tend){
+ ++_ti2;
+ }
+ }
+ virtual ~BasicModelGenerator() {}
+
+ protected:
+ virtual Model* nextModel();
+ virtual void resetGenerator();
+
+ private:
+
+ const M_iter _mbegin;
+ M_iter _mi1;
+ M_iter _mi2;
+ const M_iter _mend;
+
+ const std::set<std::string>::const_iterator _tbegin;
+ std::set<std::string>::const_iterator _titr;
+ const std::set<std::string>::const_iterator _tend;
+ std::set<std::string>::const_iterator _ti2;
+
+ bool _pairwise;
+ bool _traits;
+ bool _nomarker;
+ };
+
+ class TargetedModelGenerator : public ModelGenerator{
+ public:
+ // use this for targeted
+ TargetedModelGenerator(const Data::DataSet& ds, const std::deque<std::string>& models) :
+ ModelGenerator(ds), _mbegin(models.begin()), _mitr(models.begin()), _mend(models.end()) {}
+ virtual ~TargetedModelGenerator() {}
+
+ protected:
+
+ virtual Model* nextModel();
+ virtual void resetGenerator();
+ private:
+
+ const std::deque<std::string>::const_iterator _mbegin;
+ std::deque<std::string>::const_iterator _mitr;
+ const std::deque<std::string>::const_iterator _mend;
+ };
+
+ class OneSidedModelGenerator : public ModelGenerator{
+
+ public:
+ OneSidedModelGenerator(const Data::DataSet& ds,
+ const std::set<const Data::Marker*>& m_set,
+ const std::set<std::string>& trait,
+ const std::set<std::string>& all_traits,
+ bool nomarker ) : ModelGenerator(ds), _m_set(m_set),
+ _t_set(trait), _tall_set(all_traits),
+ _mi1(m_set.begin()), _mi2(ds.beginMarker()),
+ _titr(trait.begin()), _ti2(all_traits.begin()),
+ _traits(trait.size() > 0), _nomarker(nomarker){}
+ virtual ~OneSidedModelGenerator() {}
+
+ protected:
+ virtual Model* nextModel();
+ virtual void resetGenerator();
+
+ private:
+ const std::set<const Data::Marker*>& _m_set;
+ const std::set<std::string>& _t_set;
+ const std::set<std::string>& _tall_set;
+
+ std::set<const Data::Marker*>::const_iterator _mi1;
+ Data::DataSet::const_marker_iterator _mi2;
+
+ std::set<std::string>::const_iterator _titr;
+ std::set<std::string>::const_iterator _ti2;
+
+ std::set<std::string> _t_processed;
+ std::set<const Data::Marker*> _m_processed;
+
+ // NOTE: we ALWAYS want pairwise with this generator!
+ bool _traits;
+ bool _nomarker;
+ };
+
+ /*!
+ * \brief A class that holds the result of the regression and can be used
+ * to print the results.
+ */
+ class Result{
+ public:
+ Result(unsigned short n = 0) : coeffs(0), p_vals(0), stderr(0),
+ submodel(0), p_val(std::numeric_limits<float>::quiet_NaN()),
+ log_likelihood(0), r_squared(0), permu_idx(0),
+ n_dropped(0), n_vars(n), converged(true) {
+ if(n > 0){
+ coeffs = new float[n];
+ p_vals = new float[n];
+ stderr = new float[n];
+ }
+ }
+ ~Result(){
+ if(coeffs){delete[] coeffs;}
+ if(p_vals){delete[] p_vals;}
+ if(stderr){delete[] stderr;}
+ if(submodel){delete submodel;}
+ for(unsigned int i=0; i<sig_perms.size(); i++){
+ delete sig_perms[i];
+ }
+ }
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ // get all the primitives first
+ ar & p_val;
+ ar & log_likelihood;
+ ar & r_squared;
+ ar & n_dropped;
+ ar & permu_idx;
+ ar & df;
+ ar & n_vars;
+ ar & converged;
+
+ // now, the STL types
+ ar & prefix;
+ ar & suffix;
+ // NOTE: do NOT synchronize the unimodel!!
+ // It will always come back empty
+
+ ar & perm_pvals;
+ ar & sig_perms;
+
+ // now, the arrays of data - be sure to allocate them!
+ if(Archive::is_loading::value && n_vars > 0){
+ coeffs = new float[n_vars];
+ p_vals = new float[n_vars];
+ stderr = new float[n_vars];
+ }
+
+
+ for(unsigned int i=0; i<n_vars; i++){
+ ar & coeffs[i];
+ ar & p_vals[i];
+ ar & stderr[i];
+ }
+
+ ar & submodel;
+ }
+
+ float* coeffs;
+ float* p_vals;
+ float* stderr;
+
+ Result* submodel;
+ std::vector<Result*> unimodel;
+
+ std::vector<float> perm_pvals;
+ std::vector<Result*> sig_perms;
+
+ // A string to print before anything (variable IDs, MAF, etc)
+ std::string prefix;
+ // A string to print AFTER all of the variables, but BEFORE p-value
+ std::string suffix;
+
+ float p_val;
+ float log_likelihood;
+ float r_squared;
+
+ // For permutations, (one plus) the index that created this significant result
+ unsigned short permu_idx;
+
+ unsigned short n_dropped;
+
+ // the degrees of freedom in this model
+ unsigned short df;
+
+ // # of coefficients int the model
+ unsigned short n_vars;
+
+ // Did we converge (logistic regression only)?
+ bool converged;
+
+ bool operator<(const Result& o) const {return p_val < o.p_val;}
+
+ };
+
+ // This structure contains all the data we need to run a regression using the
+ // calculate function (with the exception of the extraData)
+ struct calc_matrix{
+ unsigned int n_cols;
+ unsigned int n_sampl;
+ unsigned int red_vars;
+ std::string prefix;
+ double* outcome;
+ double* data;
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & n_cols;
+ ar & n_sampl;
+ ar & red_vars;
+ ar & prefix;
+ if(Archive::is_loading::value){
+ outcome = new double[n_sampl];
+ data = new double[n_sampl * n_cols];
+ }
+ float out_v;
+ for(unsigned int i=0; i<n_sampl; i++){
+ if(!Archive::is_loading::value){
+ out_v = outcome[i];
+ }
+ ar & out_v;
+ outcome[i] = out_v;
+ }
+ // yes, I know that data is conceptually a 2-D matrix, but
+ // we're just passing pointers and data around!
+ for(unsigned int i=0; i<n_sampl*n_cols; i++){
+ if(!Archive::is_loading::value){
+ out_v = data[i];
+ }
+ ar & out_v;
+ data[i] = out_v;
+ }
+ }
+
+ calc_matrix() : n_cols(0), n_sampl(0), red_vars(0), outcome(0), data(0) {}
+
+ ~calc_matrix(){
+ if(outcome){delete[] outcome;}
+ if(data){delete[] data;}
+ }
+
+ };
+
+public:
+
+
+ /*
+ * A base class for ALL MPI messages sent
+ */
+ struct mpi_data{
+
+ virtual ~mpi_data(){}
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){}
+ };
+
+
+ struct mpi_permu : public mpi_data{
+
+ unsigned long int rng_seed;
+ unsigned int n_permu;
+ unsigned int permu_size;
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & rng_seed;
+ ar & n_permu;
+ ar & permu_size;
+ }
+
+ };
+
+ struct mpi_trait : public mpi_data{
+
+ std::vector<float> data;
+ std::string description;
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & data;
+ ar & description;
+ }
+
+ };
+
+ struct mpi_marker : public mpi_data{
+
+ boost::dynamic_bitset<> data;
+ std::string description;
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & description;
+
+ // serialize the data as a vector of blocks
+ std::vector<boost::dynamic_bitset<>::block_type> tmp_data;
+ if(!Archive::is_loading::value){
+ size = data.size();
+ tmp_data.reserve(data.num_blocks());
+ boost::to_block_range(data,std::back_inserter(tmp_data));
+ }
+ ar & size;
+ ar & tmp_data;
+
+ if(Archive::is_loading::value){
+ data.resize(size);
+ boost::from_block_range(tmp_data.begin(), tmp_data.end(), data);
+ }
+
+ }
+
+ private:
+ unsigned int size;
+
+ };
+
+ struct mpi_weight : public mpi_data {
+
+ //std::vector<unsigned int> _idx;
+ std::vector<float> _wt;
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ //ar & _idx;
+ ar & _wt;
+ }
+
+ };
+
+ struct mpi_extra : public mpi_data {
+
+ const ExtraData* class_data;
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & class_data;
+ }
+
+ };
+
+ /*!
+ * A structure that holds everything we need to run an MPI query
+ */
+ struct mpi_query : public mpi_data {
+ unsigned int msg_id;
+ std::vector<unsigned int> marker_idx;
+ std::vector<unsigned int> trait_idx;
+ bool categorical;
+ bool permute;
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & msg_id;
+ ar & marker_idx;
+ ar & trait_idx;
+ ar & categorical;
+ ar & permute;
+ }
+ };
+
+ struct mpi_multiquery : public mpi_data {
+ std::vector<mpi_query> all_queries;
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & all_queries;
+ }
+ };
+
+ struct mpi_covars : public mpi_data {
+ std::vector<unsigned int> covars;
+ std::vector<unsigned int> const_covars;
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & covars;
+ ar & const_covars;
+ }
+
+ };
+
+ struct mpi_pheno : public mpi_data {
+ std::vector<float> _pheno;
+ std::string _name;
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ ar & _name;
+ ar & _pheno;
+ }
+ };
+
+ /*
+ * A simple class indicating "prepare for broadcast"
+ */
+ struct mpi_bcast : public mpi_data {
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ }
+ };
+
+ /*
+ * A simple struct indicating "clean up the static variables"
+ */
+ struct mpi_clean : public mpi_data {
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<mpi_data>(*this);
+ }
+ };
+
+ /*
+ * An envelope class that holds a single base pointer to an mpi_data member
+ * Note that this member will be determined polymorphically based on the
+ * specific pointer being serialized
+ */
+ struct mpi_envelope{
+ mpi_data* msg;
+
+ mpi_envelope() : msg(0) {}
+ // please delete the data yourself!
+ ~mpi_envelope() {}
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & msg;
+ }
+ };
+
+ /*!
+ * A structure that holds the response to a query
+ */
+ struct mpi_response{
+
+ std::vector<std::pair<unsigned int, Result*> > results;
+
+ template <class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & results;
+ }
+
+ };
+
+
+public:
+
+ Regression() : _use_mpi(false), _lowmem(false), class_data(0), n_perms(0),
+ mgp(0), _targeted(false), msg_id(0), weight_complete(true), wt_marker_itr(0){}
+ virtual ~Regression();
+
+ boost::program_options::options_description& addOptions(boost::program_options::options_description& opts);
+ void parseOptions(const boost::program_options::variables_map& vm);
+
+ //! iterate through and run the regressions we want.
+ void runRegression(const PLATO::Data::DataSet& ds);
+
+ static Model* parseModelStr(const std::string& model_str, const PLATO::Data::DataSet& ds);
+
+protected:
+
+ virtual boost::program_options::options_description getExtraOptions() = 0;
+
+ /*! \brief Runs the regression calculation
+ * This function actually runs the regression (or appropriate statistical
+ * test) calculation based on the raw data passed in.
+ * \param result A n_rows length vector containing the output vector
+ * \param data A n_rows x n_cols matrix containing the independent values
+ * for the regression. Note that the data should be in the following order:
+ * - intercept (a column of all 1's)
+ * - covariates
+ * - main effects
+ * - interactions
+ * Also note that the data is arranged linearly in memory, with the following
+ * relationship: data[i][j] = data[i*(n_cols + offset) + j]
+ * \param n_rows The number of rows in the dataset
+ * \param n_cols The number of independent variables in the dataset
+ * \param offset The number of extra columns in the data not included in the
+ * particular model that we are testing.
+ * \param n_covars The number of covariates in the "reduced" model to test
+ * significance against. Note that if n_covars > covar_names.size() + 1, then
+ * this method will call calculate again. For an example, see the definition
+ * in LinearRegression.
+ * \param run_null Should we run the null model (set to false only if a permutation)
+ */
+ typedef Result* (calc_fn)(const double*, const double*, unsigned int,
+ unsigned int, unsigned int, unsigned int, bool, const Regression::ExtraData*);
+
+ // get the (static) function that actually does the regression
+ virtual calc_fn& getCalcFn() const = 0;
+
+ // get class data that we need for the regression
+ virtual const ExtraData* getExtraData() const;
+ virtual bool initData() = 0;
+
+ virtual void printResults();
+ virtual void printVarHeader(const std::string& var_name, std::ofstream& of) const;
+ // Use this to print extra column information, like convergence..
+ virtual void printExtraHeader(std::ofstream& of) {}
+ virtual std::string printExtraResults(const Result& r) {return "";}
+
+ static unsigned int findDF(const gsl_matrix* P, unsigned int reduced_vars,
+ unsigned int n_dropped, unsigned int* extra_cols, unsigned int n_extra_cols);
+
+ virtual void processResponse(unsigned int bufsz, const char* in_buf);
+ virtual std::pair<unsigned int, const char*> nextQuery();
+
+ static void calculate_MPI(unsigned int bufsz, const char* in_buf,
+ std::deque<std::pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv,
+ calc_fn& func);
+
+private:
+ Result* run(const Model& m);
+
+ /*! \brief A function to be used for threading
+ * This function takes a ModelGenerator and iterates through it, constantly
+ * adding results to the result deque.
+ */
+ void start();
+ void runWeights();
+
+ float addWeight(const Data::Marker* m, const Result* r);
+ float getCategoricalWeight(const PLATO::Data::Marker* m);
+ void addResult(Result* r);
+ calc_matrix* getCalcMatrix(const Model& m, const gsl_permutation* permu = 0);
+
+ bool resetPheno(const std::string& pheno);
+ Result* addUnivar(const Data::Marker* m, Result* r);
+ Result* addUnivar(const std::string& s, Result* r);
+ void addUnivariate(Result& r, const Model& m);
+
+ void printMarkerHeader(const std::string& var_name, std::ofstream& of);
+ void printHeader(unsigned int n_snp, unsigned int n_trait, std::ofstream& of, bool permu=false);
+
+ void printResult(const Result& r, std::ostream& of);
+ void printResultLine(const Result& r, std::ostream& of);
+
+ const Model* getNextMPIModel();
+
+ std::pair<unsigned int, const char*> generateMsg(const Model& m);
+ std::pair<unsigned int, const char*> generateMultiMsg(std::vector<const Model*>& m);
+
+ static void processBroadcast();
+ void initMPI();
+ void MPIBroadcast(std::pair<unsigned int, const char*> msg) const;
+ void MPIBroadcastPheno();
+ void MPIBroadcastMarker(const Data::Marker* m);
+ void MPIBroadcastTrait(const std::string& t);
+ void MPIBroadcastWeights() const;
+ void MPIStartBroadcast() const;
+ void MPIStopBroadcast() const;
+
+public:
+ typedef boost::function1<calc_matrix*, const gsl_permutation*> genPermuData;
+
+private:
+
+ static void initPermutations(unsigned int n_perm, unsigned int sz,
+ std::deque<gsl_permutation*>& perm_list, unsigned long int permu_seed);
+ static std::string getMarkerDesc(const Data::Marker* m, const std::string& sep_str);
+ static void permuteData(const std::vector<float>& pheno, float*& pheno_perm,
+ const std::deque<std::vector<float> >& covars, std::vector<float*>& covar_perm,
+ unsigned int permuCovars, const gsl_permutation* permu);
+ static unsigned int getNumCols(unsigned int n_loci, unsigned int n_trait,
+ unsigned int n_covar, bool interact, bool categorical);
+ static bool addDataRow(boost::multi_array_ref<double, 2>& out_data,
+ const std::vector<float>& covar_vals, const std::vector<unsigned char>& geno_vals,
+ const std::vector<float>& geno_weight, const std::vector<float>& trait_vals,
+ const EncodingModel& enc, bool interact, bool categorical,
+ unsigned int& n_samples, unsigned int& n_missing);
+ static calc_matrix* getCalcMatrix(const mpi_query& mq, const gsl_permutation* permu);
+ static Result* runMPIModel(const mpi_query* mq, calc_fn& func);
+ static void runMPIQuerySingleThread(const mpi_query* mq,
+ std::deque<std::pair<unsigned int, Result*> >& ouptut_queue,
+ boost::mutex& result_mutex, calc_fn& func);
+
+ static void runMPIQueryMultiThread(const mpi_query* mq,
+ std::deque<std::pair<unsigned int, const char*> >& result_queue,
+ boost::mutex& result_mutex, boost::condition_variable& cv, calc_fn& func);
+
+
+ static void runPermutations(Result* r, genPermuData& perm_fn,
+ const std::deque<gsl_permutation*>& permus, calc_fn& calculate, const ExtraData* ed);
+
+ /*static void runMPIQuery(const mpi_query* mq,
+ std::deque<std::pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv,
+ calc_fn& func);*/
+
+private:
+ //------------------------------------------------
+ // General running parameters
+
+ //! filename of output
+ std::string out_fn;
+
+ //! are we threaded?
+ bool _threaded;
+ //! or using MPI?
+ bool _use_mpi;
+
+ //! Do we want to reduce our memory footprint (print to file, keeping
+ // only the p-values, then sort and print individual lines)
+ bool _lowmem;
+ boost::iostreams::stream<boost::iostreams::file_descriptor> tmp_f;
+
+ unsigned int n_threads;
+
+ //! list of results
+ std::deque<Result*> results;
+ //! list of p-values (used in lowmem setting)
+ std::deque<float> result_pvals;
+
+ mutable ExtraData* class_data;
+
+ //! Encoding scheme for the SNPs in the regression
+ EncodingModel encoding;
+
+ //------------------------------------------------
+ // Permutation-related variables
+
+ // number of permutations to calculate p-values - set to 0 to disable
+ // permutation testing.
+ unsigned int n_perms;
+
+ unsigned long int permu_seed;
+
+ // Significance level below which to save all data for a permutation
+ float permu_sig;
+
+ // do we want to run full submodels for our
+ bool full_permu;
+
+ // the actual vector of permutations
+ std::deque<gsl_permutation*> permutations;
+
+ // Filename for all detailed permutation results
+ std::string permu_detail_fn;
+ //
+ std::string permu_pval_fn;
+
+ std::ofstream permu_detail_f;
+ boost::iostreams::stream<boost::iostreams::file_descriptor> permu_detail_tmpf;
+
+ std::ofstream permu_pval_f;
+
+ // a min-heap of permutation p-values.
+ std::priority_queue<float, std::deque<float>, std::greater<float> > permu_pval_heap;
+
+ // deque of significant pvalues (used in lowmem setting)
+ std::deque<float> sig_permu_pvals;
+
+ // deque of significant results (used not in lowmem setting)
+ std::deque<Result*> sig_permus;
+
+ //------------------------------------------------
+ // Data variables
+
+ // vector of all covariates
+ std::deque<std::vector<float> > _covars;
+
+ const Data::DataSet* ds_ptr;
+
+ //------------------------------------------------
+ // Result Reporting Variables
+
+ //! raw p-value cutoff for displaying models
+ float cutoff_p;
+
+ //! a set of correction methods to apply to the p-values
+ std::set<CorrectionModel> corr_methods;
+
+ // univariate results by marker and trait
+ std::map<const PLATO::Data::Marker*, Result*> _marker_uni_result;
+ std::map<std::string, Result*> _trait_uni_result;
+
+ // we'll need to delete all of these univariate models
+ std::deque<Result*> _uni_results;
+
+ std::map<const PLATO::Data::Marker*, float> categ_weight;
+
+ // mapping of column IDs to extra degrees of freedom (this comes from the weighted encoding)
+ std::map<unsigned int, unsigned int> _extra_df_map;
+
+ //------------------------------------------------
+ // Model generation variables
+
+ // Model generator to use
+ ModelGenerator* mgp;
+
+
+ //! a file of models to use
+ std::vector<std::string> model_files;
+ //! a list of models from the model files
+ std::deque<std::string> _models;
+ //! List of traits to include
+ std::set<std::string> incl_traits;
+ //! List of traits to exclude
+ std::set<std::string> excl_traits;
+ //! List of markers to include
+ std::set<std::string> incl_marker_name;
+ //! covariates to use in the regression
+ std::set<std::string> covar_names;
+ //! covariates to use in the regression DO NOT PERMUTE!
+ std::set<std::string> const_covar_names;
+
+ //! build models with traits as well?
+ bool include_traits;
+ //! generate one-sided pairwise models?
+ bool _onesided;
+ //! include interactions?
+ bool interactions;
+ //! exclude markers? (only use covariates?)
+ bool exclude_markers;
+ //! autogenerate pairwise models
+ bool pairwise;
+ //! Show univariate models
+ bool show_uni;
+
+ //! Is this a targeted model?
+ bool _targeted;
+
+ //-----------------------------------------------
+ // Threading variables
+
+ boost::mutex _result_mutex;
+ boost::mutex _marker_itr_mutex;
+ boost::mutex _categ_mutex;
+ boost::mutex _univar_mmutex;
+ boost::mutex _univar_tmutex;
+
+ //-----------------------------------------------
+ // MPI Variables
+
+ // The following data structures are needed for MPI to work properly
+ //! A mapping of id -> models for all things currently running
+ std::map<unsigned int, const Model*> work_map;
+ //! mapping of results to locks that they are waiting on to add them to the
+ //! result list.
+ std::map<Result*, int*> post_lock_map;
+ //! mapping for results->generating models for post lock results
+ std::map<Result*, const Model*> post_lock_models;
+ //! A mapping of currently working (or queued) model IDs to the locks they have acquired
+ std::multimap<std::string, int*> work_lock_map;
+
+ // a set of models currently being processed.
+ // NOTE: synchronize this with _categ_mutex!
+ std::set<std::string> pre_lock_set;
+
+ //! a queue of models that need to be run
+ std::deque<const Model*> model_queue;
+
+ // current message ID
+ unsigned int msg_id;
+
+ // have we computed all weights?
+ bool weight_complete;
+
+ // Do we need to start worker threads for weight calculations?
+ bool start_weight_workers;
+
+ // Do we need to start worker threads for "regular" calculations?
+ bool start_regular_workers;
+
+ // All of the worker threads on the master node should go into this thread group
+ Utility::ThreadPool master_workers;
+
+ // Iterator over the markers to calculate weights in a non-targeted
+ // configuration
+ Data::DataSet::const_marker_iterator* wt_marker_itr;
+
+ // mapping of Marker ptr to index
+ std::map<const Data::Marker*, unsigned int> marker_idx_map;
+
+ // mapping of trait to index
+ std::map<const std::string, unsigned int> trait_idx_map;
+
+ // Static variables (used only in the slaves!)
+ // a deque of marker data and the "weight"
+ static std::deque<std::pair<boost::dynamic_bitset<>, float> > _marker_data;
+ static std::deque<std::string> _marker_desc;
+ static std::deque<std::string> _trait_desc;
+ static std::deque<std::vector<float> > _trait_data;
+ static std::deque<std::vector<float> > _covar_data;
+ static unsigned int n_const_covars;
+ static std::deque<gsl_permutation*> _permu_data;
+ static std::vector<float> _curr_pheno;
+ static std::string _curr_pheno_name;
+ static const ExtraData* _extra_data;
+ static boost::shared_mutex _mpi_mutex;
+ static Utility::ThreadPool _mpi_threads;
+
+ //------------------------------------------------
+ // Structures for sorting results
+
+ struct result_sorter{
+ inline bool operator() (const Result* const & x, const Result* const& y) const{
+ return (x && y) ? x->p_val < y->p_val : x < y;
+ }
+ };
+
+ class pval_sorter{
+ public:
+ pval_sorter(const std::deque<float>& v) : _v(v) {}
+
+ bool operator() (size_t i, size_t j){
+ return _v[i] < _v[j];
+ }
+
+ private:
+ const std::deque<float>& _v;
+ };
+
+protected:
+ //! A string of the outcome name
+ std::set<std::string> outcome_names;
+ //! Do we want to do a pheWAS??
+ bool _phewas;
+ // Iterator for the current outcome being looked at
+ std::set<std::string>::const_iterator output_itr;
+
+ //! separator to use while printing output
+ std::string sep;
+
+ // vector of all phenotypes
+ std::vector<float> _pheno;
+
+ //! output stream to print results to
+ std::ofstream out_f;
+};
+
+template <class M_iter>
+Regression::Model* Regression::BasicModelGenerator<M_iter>::nextModel() {
+
+ Model* m = 0;
+
+ // We must want exhaustive pairwise models
+ if (_pairwise) {
+
+ // We want Env vars
+ if (_traits) {
+ // we want exhaustive EnvxEnv
+ if (_nomarker) {
+ if (++_ti2 == _tend && _titr != _tend && ++_titr != _tend) {
+ _ti2 = _titr;
+ ++_ti2;
+ }
+ if (_titr != _tend && _ti2 != _tend) {
+ m = new Model();
+ m->traits.push_back(*_titr);
+ m->traits.push_back(*_ti2);
+ }
+
+ // We want exhaustive SNPxSNPxEnv models
+ } else {
+
+ if (_mi2 == _mend) {
+ if (_mi1 != _mend && ++_mi1 != _mend) {
+ _mi2 = _mi1;
+ if (++_mi2 ==_mend) {
+ _mi1 = _mbegin;
+ _mi2 = _mi1;
+ ++_titr;
+ }
+ }
+ }
+ if (_titr != _tend) {
+ m = new Model();
+ m->markers.push_back(*_mi1);
+ m->markers.push_back(*_mi2);
+ m->traits.push_back(*_titr);
+ ++_mi2;
+ }
+ }
+ // OK, we just want SNPxSNP models
+ } else {
+
+ if (_mi2 == _mend) {
+ if (_mi1 != _mend && ++_mi1 != _mend){
+ _mi2 = _mi1;
+ ++_mi2;
+ }
+ }
+ if (_mi2 != _mend) {
+ m = new Model();
+ m->markers.push_back(*_mi1);
+ m->markers.push_back(*_mi2);
+ ++_mi2;
+ }
+
+ }
+ // We want Marker x Trait models (i.e. GxE)
+ } else if (!_nomarker && _traits) { // Note: !_pairwise == true here
+ if (_mi1 == _mend) {
+ _mi1 = _mbegin;
+ ++_titr;
+ }
+ if (_mi1 != _mend && _titr != _tend) {
+ m = new Model();
+ m->markers.push_back(*_mi1);
+ m->traits.push_back(*_titr);
+ ++_mi1;
+ }
+ // Must want single variable models
+ } else {
+ // Env only
+ if (_nomarker) {
+ if (_titr != _tend) {
+ m = new Model();
+ m->traits.push_back(*_titr);
+ ++_titr;
+ }
+ // SNP only
+ } else {
+ if (_mi1 != _mend) {
+ m = new Model();
+ m->markers.push_back(*_mi1);
+ ++_mi1;
+ }
+ }
+ }
+
+ // NOTE: m == 0 if no more models can be generated!
+ return m;
+
+}
+
+template <class M_iter>
+void Regression::BasicModelGenerator<M_iter>::resetGenerator() {
+ _mi1 = _mbegin;
+ _mi2 = _mbegin;
+ _titr = _tbegin;
+ _ti2 = _tbegin;
+
+ if(_mi2 != _mend){
+ ++_mi2;
+ }
+
+ if(_ti2 != _tend){
+ ++_ti2;
+ }
+}
+
+}
+}
+
+#endif /* REGRESSION_H_ */
diff --git a/method_lib/data/BiallelicSample.cpp b/method_lib/data/BiallelicSample.cpp
new file mode 100644
index 0000000..de7a57d
--- /dev/null
+++ b/method_lib/data/BiallelicSample.cpp
@@ -0,0 +1,103 @@
+/*
+ * BiallelicSample.cpp
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#include "BiallelicSample.h"
+
+#include "Marker.h"
+
+#include <algorithm>
+
+using std::string;
+using std::pair;
+using std::make_pair;
+using boost::dynamic_bitset;
+
+namespace PLATO {
+namespace Data{
+
+BiallelicSample::BiallelicSample(const string& famid, const string& id, unsigned int n_genos) :
+ Sample(famid, id) {
+ //_genotype.resize(2*n_genos);
+ // We want to initialize to all missing, so we'll precompute our mask, which
+ // should be 10101010...
+ dynamic_bitset<>::block_type mask = 0;
+ for(unsigned int i=0; i<dynamic_bitset<>::bits_per_block; i+=2){
+ mask <<= 2;
+ mask |= 2;
+ }
+
+ // now, just tack on the masks an appropriate number of times
+ for(unsigned int i=0; i<2*n_genos; i+=dynamic_bitset<>::bits_per_block){
+ _genotype.append(mask);
+ }
+ _genotype.resize(2*n_genos);
+
+}
+
+void BiallelicSample::appendGenotype(unsigned char geno1, unsigned char geno2){
+
+ // If either is "missing", then both are missing!
+ if(geno1 == missing_allele || geno2 == missing_allele){
+ appendMissingGenotype();
+ }else{
+ if(geno1 && !geno2){
+ std::swap(geno1, geno2);
+ }
+ // Note: this can still be "missing" if we give [1,0], so this will take
+ // Binary PED without modification.
+ _genotype.push_back(geno1);
+ _genotype.push_back(geno2);
+
+ }
+}
+
+void BiallelicSample::appendMissingGenotype(){
+ _genotype.push_back(1);
+ _genotype.push_back(0);
+}
+
+void BiallelicSample::setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2){
+ unsigned int pos = m.getIndex();
+
+ // If either is "missing", then both are missing!
+ if(geno1 == missing_allele || geno2 == missing_allele){
+ _genotype.set(2*pos);
+ _genotype.reset(2*pos + 1);
+ }else{
+ if(geno1 && !geno2){
+ std::swap(geno1, geno2);
+ }
+ // Note: this can still be "missing" if we give [1,0], so this will take
+ // Binary PED without modification.
+ _genotype.set(2*pos, geno1);
+ _genotype.set(2*pos + 1, geno2);
+
+ }
+}
+
+void BiallelicSample::setMissingGenotype(const Marker& m){
+ unsigned int pos = m.getIndex();
+ _genotype.set(2*pos);
+ _genotype.reset(2*pos + 1);
+}
+
+bool BiallelicSample::isMissing(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ return _genotype[2*pos] && (!_genotype[2*pos + 1]);
+}
+
+pair<unsigned char, unsigned char> BiallelicSample::getGeno(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ if(isMissing(m)){
+ return missing_geno;
+ }else{
+ return make_pair(_genotype[2*pos], _genotype[2*pos + 1]);
+ }
+}
+
+}
+}
diff --git a/method_lib/data/BiallelicSample.h b/method_lib/data/BiallelicSample.h
new file mode 100644
index 0000000..71bca50
--- /dev/null
+++ b/method_lib/data/BiallelicSample.h
@@ -0,0 +1,43 @@
+/*
+ * BiallelicSample.h
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#ifndef DATA_BIALLELIC_SAMPLE_H
+#define DATA_BIALLELIC_SAMPLE_H
+
+#include "Sample.h"
+
+#include <boost/dynamic_bitset.hpp>
+
+
+namespace PLATO{
+namespace Data{
+
+class BiallelicSample : public Sample {
+
+public:
+ BiallelicSample(const std::string& famid, const std::string& id, unsigned int n_genos);
+
+ virtual void appendGenotype(unsigned char geno1, unsigned char geno2);
+ virtual void appendMissingGenotype();
+ virtual void setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2);
+ virtual void setMissingGenotype(const Marker& m);
+ virtual bool isMissing(const Marker&) const;
+ virtual std::pair<unsigned char, unsigned char> getGeno(const Marker&) const;
+
+ virtual ~BiallelicSample(){}
+
+private:
+
+ boost::dynamic_bitset<> _genotype;
+ unsigned int _max_pos;
+
+};
+
+}
+}
+
+#endif /* BIALLELICSAMPLE_H_ */
diff --git a/method_lib/data/DataSet.cpp b/method_lib/data/DataSet.cpp
new file mode 100644
index 0000000..a064566
--- /dev/null
+++ b/method_lib/data/DataSet.cpp
@@ -0,0 +1,233 @@
+#include "DataSet.h"
+
+#include <algorithm>
+#include <limits>
+#include <vector>
+#include <sstream>
+
+#include <boost/algorithm/string.hpp>
+
+#include "util/InputManager.h"
+
+#include "Marker.h"
+#include "Sample.h"
+#include "Family.h"
+
+using std::vector;
+using std::deque;
+using std::string;
+using std::map;
+using std::pair;
+
+using PLATO::Utility::InputManager;
+
+namespace PLATO{
+namespace Data{
+
+DataSet::~DataSet(){
+ vector<Marker*>::iterator m_it = _markers.begin();
+ while(m_it != _markers.end()){
+ delete *m_it;
+ ++m_it;
+ }
+ _markers.clear();
+
+ vector<Sample*>::iterator s_it = _samples.begin();
+ while(s_it != _samples.end()){
+ delete *s_it;
+ ++s_it;
+ }
+ _samples.clear();
+
+ vector<Family*>::iterator f_it = _families.begin();
+ while(f_it != _families.end()){
+ delete *f_it;
+ ++f_it;
+ }
+ _families.clear();
+
+}
+
+Marker* DataSet::addMarker(const std::string& chrom, unsigned int loc, const std::string& id){
+ // maybe do some sanity checks here...
+
+ Marker* new_marker = new Marker(chrom, loc, id, _marker_idx++);
+
+ _markers.push_back(new_marker);
+
+ if(id != "." && id != ""){
+ _marker_map[id] = new_marker;
+ }
+
+ _marker_pos_map[std::make_pair(InputManager::chrStringToInt(chrom), loc)] = new_marker;
+ return new_marker;
+}
+
+Sample* DataSet::addSample(const std::string& famid, const std::string& id, unsigned int n_genos){
+ Sample* new_samp = Sample::create(*this,famid,id,n_genos);
+
+ _sample_idx_map[new_samp] = _samples.size();
+ _samples.push_back(new_samp);
+ _sample_map[std::make_pair(famid, id)] = new_samp;
+
+ // Now, add a NaN for everything in the trait map
+ map<string, pair<bool, deque<float> > >::iterator t_itr = _trait_map.begin();
+ while(t_itr != _trait_map.end()){
+ (*t_itr).second.second.push_back(std::numeric_limits<float>::quiet_NaN());
+ ++t_itr;
+ }
+
+
+ return new_samp;
+}
+
+Sample* DataSet::addSample(const std::string& id, unsigned int n_genos){
+ return addSample(id, id, n_genos);
+}
+
+Family* DataSet::addFamily(const std::string& id){
+ Family* new_fam = new Family(id);
+
+ _families.push_back(new_fam);
+ _family_map[id] = new_fam;
+
+ return new_fam;
+}
+
+Sample* DataSet::getSample(const string& id){
+ map<pair<string, string>,Sample*>::const_iterator s_itr = _sample_map.find(std::make_pair(id, id));
+ return s_itr == _sample_map.end() ? 0 : (*s_itr).second;
+}
+
+const Sample* DataSet::getSample(const string& id) const{
+ map<pair<string, string>,Sample*>::const_iterator s_itr = _sample_map.find(std::make_pair(id, id));
+ return s_itr == _sample_map.end() ? 0 : (*s_itr).second;
+}
+
+Sample* DataSet::getSample(const string& fid, const string& iid){
+ map<pair<string, string>,Sample*>::const_iterator s_itr = _sample_map.find(std::make_pair(fid, iid));
+ return s_itr == _sample_map.end() ? 0 : (*s_itr).second;
+}
+
+const Sample* DataSet::getSample(const string& fid, const string& iid) const{
+ map<pair<string, string>,Sample*>::const_iterator s_itr = _sample_map.find(std::make_pair(fid, iid));
+ return s_itr == _sample_map.end() ? 0 : (*s_itr).second;
+}
+
+Marker* DataSet::getMarker(const std::string& id){
+ MarkerIDMap::const_iterator m_itr = _marker_map.find(id);
+ Marker* m = 0;
+ if(m_itr != _marker_map.end()){
+ m = (*m_itr).second;
+ }else{
+ // try to find with chr:pos instead!
+ vector<string> chr_pos;
+ boost::algorithm::split(chr_pos, id, boost::is_any_of(":"), boost::token_compress_off);
+ if(chr_pos.size() == 2){
+ unsigned int pos;
+ std::stringstream pos_ss(chr_pos[1]);
+ pos_ss >> pos;
+ if(pos_ss.eof()){
+ m = getMarker(chr_pos[0], pos);
+ }
+ }
+ }
+ return m;
+}
+
+const Marker* DataSet::getMarker(const std::string& id) const{
+ map<string,Marker*>::const_iterator m_itr = _marker_map.find(id);
+ const Marker* m = 0;
+ if(m_itr != _marker_map.end()){
+ m = (*m_itr).second;
+ }else{
+ // try to find with chr:pos instead!
+ vector<string> chr_pos;
+ boost::algorithm::split(chr_pos, id, boost::is_any_of(":"), boost::token_compress_off);
+ if(chr_pos.size() == 2){
+ unsigned int pos;
+ std::stringstream pos_ss(chr_pos[1]);
+ pos_ss >> pos;
+ if(pos_ss.eof()){
+ m = getMarker(chr_pos[0], pos);
+ }
+ }
+ }
+ return m;
+}
+
+Family* DataSet::getFamily(const std::string& id){
+ map<string,Family*>::const_iterator f_itr = _family_map.find(id);
+ return f_itr == _family_map.end() ? 0 : (*f_itr).second;
+}
+
+const Family* DataSet::getFamily(const std::string& id) const{
+ map<string,Family*>::const_iterator f_itr = _family_map.find(id);
+ return f_itr == _family_map.end() ? 0 : (*f_itr).second;
+}
+
+Marker* DataSet::getMarker(const std::string& chrom, unsigned int loc){
+ map<pair<unsigned short, unsigned int>,Marker*>::const_iterator m_itr =
+ _marker_pos_map.find(std::make_pair(InputManager::chrStringToInt(chrom), loc));
+ return m_itr == _marker_pos_map.end() ? 0 : (*m_itr).second;
+}
+
+const Marker* DataSet::getMarker(const std::string& chrom, unsigned int loc) const{
+ map<pair<unsigned short, unsigned int>,Marker*>::const_iterator m_itr =
+ _marker_pos_map.find(std::make_pair(InputManager::chrStringToInt(chrom), loc));
+ return m_itr == _marker_pos_map.end() ? 0 : (*m_itr).second;
+}
+
+bool DataSet::addTrait(const std::string& trait, const Sample* samp, float val){
+ map<const Sample*, unsigned int>::const_iterator s_itr = _sample_idx_map.find(samp);
+
+ // Could not find the position of the given sample - something is bad here!
+ if(s_itr == _sample_idx_map.end()){
+ return false;
+ }
+
+ map<string, pair<bool, deque<float> > >::iterator itr = _trait_map.find(trait);
+
+ //If the mapping isn't found for the given trait, add a completely NaN entry
+ if(itr == _trait_map.end()){
+ itr = _trait_map.insert(_trait_map.end(), make_pair(trait, make_pair(true,
+ deque<float> (_samples.size(),
+ std::numeric_limits<float>::quiet_NaN()))));
+ }
+
+ (*itr).second.second[(*s_itr).second] = val;
+ return true;
+}
+
+float DataSet::getTrait(const std::string& trait, const Sample* samp) const{
+ map<const Sample*, unsigned int>::const_iterator s_itr = _sample_idx_map.find(samp);
+ map<string, pair<bool, deque<float> > >::const_iterator itr = _trait_map.find(trait);
+
+ if(s_itr == _sample_idx_map.end() || itr == _trait_map.end()){
+ return std::numeric_limits<float>::quiet_NaN();
+ }
+
+ return (*itr).second.second[(*s_itr).second];
+}
+
+bool DataSet::setTraitEnabled(const std::string& trait, bool isEnabled){
+ map<string, pair<bool, deque<float> > >::iterator m_itr = _trait_map.find(trait);
+
+ if(m_itr != _trait_map.end()){
+ (*m_itr).second.first = isEnabled;
+ return true;
+ }
+ // return false if the given trait is not found
+ return false;
+}
+
+void DataSet::sortMarkers() {
+ std::sort(_markers.begin(), _markers.end(), std::less<Marker*>());
+}
+
+void DataSet::sortSamples() {
+ std::sort(_samples.begin(), _samples.end(), std::less<Sample*>());
+}
+
+}
+}
diff --git a/method_lib/data/DataSet.h b/method_lib/data/DataSet.h
new file mode 100644
index 0000000..9054b69
--- /dev/null
+++ b/method_lib/data/DataSet.h
@@ -0,0 +1,228 @@
+#ifndef DATA_DATASET_H
+#define DATA_DATASET_H
+
+#include <deque>
+#include <map>
+#include <string>
+#include <vector>
+#include <algorithm>
+
+#include <boost/iterator/iterator_facade.hpp>
+#include <boost/algorithm/string.hpp>
+
+#include "Sample.h"
+#include "Marker.h"
+
+namespace PLATO{
+
+namespace Data{
+
+class Family;
+
+class DataSet{
+
+public:
+ DataSet() : _marker_idx(0), _biallelic(false), _phased(false) {}
+ ~DataSet();
+
+ template <class T>
+ class const_iterator : public boost::iterator_facade<const_iterator<T>, const T* const, boost::forward_traversal_tag>{
+
+ public:
+ const_iterator(
+ const typename std::vector<T*>::const_iterator& itr,
+ const typename std::vector<T*>::const_iterator& end) :
+ _itr(itr), _end(end) {}
+
+ private:
+ friend class boost::iterator_core_access;
+
+ // Iterate only over enabled samples
+ void increment() { while(++_itr != _end && !((*(_itr))->isEnabled()));}
+ bool equal(const const_iterator& other) const { return _itr == other._itr;}
+ const T* const & dereference() const { return _tmp = *_itr;}
+
+ mutable T const* _tmp;
+ typename std::vector<T*>::const_iterator _itr;
+ typename std::vector<T*>::const_iterator _end;
+ };
+
+ template <class T>
+ class iterator : public boost::iterator_facade<iterator<T>, T*, boost::forward_traversal_tag>{
+
+ public:
+ iterator(const typename std::vector<T*>::iterator& itr,
+ const typename std::vector<T*>::iterator& end) :
+ _itr(itr), _end(end) {}
+
+ // Make sure I can convert an iterator<T> to a const_iterator<T>
+ operator const_iterator<T>() const {
+ return const_iterator<T>(_itr, _end);
+ }
+
+ private:
+ friend class boost::iterator_core_access;
+
+ // Iterate only over enabled samples
+ void increment() { while( !(++_itr == _end) && !((*(_itr))->isEnabled()));}
+ bool equal(const iterator& other) const { return _itr == other._itr;}
+ T* & dereference() const { return (*_itr);}
+
+ typename std::vector<T*>::iterator _itr;
+ typename std::vector<T*>::iterator _end;
+ };
+
+ class const_trait_iterator: public boost::iterator_facade<
+ const_trait_iterator, const std::string&,
+ boost::forward_traversal_tag> {
+
+ public:
+ const_trait_iterator(std::map<std::string, std::pair<bool, std::deque<float> > >::const_iterator itr,
+ std::map<std::string, std::pair<bool, std::deque<float> > >::const_iterator end) :
+ _itr(itr), _end(end) {}
+
+ private:
+ friend class boost::iterator_core_access;
+
+ void increment() { while(_itr != _end && ++_itr != _end && !(*_itr).second.first);}
+ bool equal(const const_trait_iterator& other) const { return _itr == other._itr; }
+ const std::string& dereference() const { return (*_itr).first;}
+
+ std::map<std::string, std::pair<bool, std::deque<float> > >::const_iterator _itr;
+ std::map<std::string, std::pair<bool, std::deque<float> > >::const_iterator _end;
+ };
+
+ class trait_iterator: public boost::iterator_facade<
+ trait_iterator, const std::string&,
+ boost::forward_traversal_tag> {
+
+ public:
+ trait_iterator(std::map<std::string, std::pair<bool, std::deque<float> > >::iterator itr,
+ std::map<std::string, std::pair<bool, std::deque<float> > >::iterator end) :
+ _itr(itr), _end(end) {}
+
+ operator const_trait_iterator() const{
+ return const_trait_iterator(_itr, _end);
+ }
+ private:
+ friend class boost::iterator_core_access;
+
+ void increment() { while(_itr != _end && !(*_itr).second.first) {++_itr;}}
+ bool equal(const trait_iterator& other) const { return _itr == other._itr; }
+ const std::string& dereference() const { return (*_itr).first;}
+
+ std::map<std::string, std::pair<bool, std::deque<float> > >::iterator _itr;
+ std::map<std::string, std::pair<bool, std::deque<float> > >::iterator _end;
+ };
+
+ typedef const_iterator<Sample> const_sample_iterator;
+ typedef const_iterator<Marker> const_marker_iterator;
+ typedef const_iterator<Family> const_family_iterator;
+
+ typedef iterator<Sample> sample_iterator;
+ typedef iterator<Marker> marker_iterator;
+ typedef iterator<Family> family_iterator;
+
+ void setBiallelic(bool enabled=true){_biallelic = enabled;}
+ void setPhased(bool enabled=true){_phased = enabled;}
+ bool isPhased() const {return _phased;}
+ bool isBiallelic() const {return _biallelic;}
+
+
+ const_sample_iterator beginSample() const{
+ return const_sample_iterator(_samples.begin(), _samples.end());}
+ const_marker_iterator beginMarker() const{
+ return const_marker_iterator(_markers.begin(), _markers.end());}
+ const_family_iterator beginFamily() const{
+ return const_family_iterator(_families.begin(), _families.end());}
+ const_trait_iterator beginTrait() const{
+ return const_trait_iterator(_trait_map.begin(), _trait_map.end());}
+
+ const_sample_iterator endSample() const{
+ return const_sample_iterator(_samples.end(), _samples.end());}
+ const_marker_iterator endMarker() const{
+ return const_marker_iterator(_markers.end(), _markers.end());}
+ const_family_iterator endFamily() const{
+ return const_family_iterator(_families.end(), _families.end());}
+ const_trait_iterator endTrait() const{
+ return const_trait_iterator(_trait_map.end(), _trait_map.end());}
+
+
+ sample_iterator beginSample() {
+ return sample_iterator(_samples.begin(), _samples.end());}
+ marker_iterator beginMarker() {
+ return marker_iterator(_markers.begin(), _markers.end());}
+ family_iterator beginFamily() {
+ return family_iterator(_families.begin(), _families.end());}
+ trait_iterator beginTrait() {
+ return trait_iterator(_trait_map.begin(), _trait_map.end());}
+
+ sample_iterator endSample() {
+ return sample_iterator(_samples.end(), _samples.end());}
+ marker_iterator endMarker() {
+ return marker_iterator(_markers.end(), _markers.end());}
+ family_iterator endFamily() {
+ return family_iterator(_families.end(), _families.end());}
+ trait_iterator endTrait() {
+ return trait_iterator(_trait_map.end(), _trait_map.end());}
+
+ Marker* addMarker(const std::string& chrom, unsigned int loc, const std::string& id);
+ Sample* addSample(const std::string& famid, const std::string& id, unsigned int n_genos=0);
+ Sample* addSample(const std::string& id, unsigned int n_genos=0);
+ Family* addFamily(const std::string& id);
+ bool addTrait(const std::string& trait, const Sample* samp, float val);
+ float getTrait(const std::string& trait, const Sample* samp) const;
+ bool setTraitEnabled(const std::string& trait, bool isEnabled=true);
+ bool isTrait(const std::string& trait) const { return _trait_map.find(trait) != _trait_map.end();}
+
+ const Sample* getSample(const std::string& id) const;
+ const Sample* getSample(const std::string& fid, const std::string& id) const;
+ const Marker* getMarker(const std::string& id) const;
+ const Family* getFamily(const std::string& id) const;
+ const Marker* getMarker(const std::string& chrom, unsigned int loc) const;
+
+ Sample* getSample(const std::string& id);
+ Sample* getSample(const std::string& fid, const std::string& id);
+ Marker* getMarker(const std::string& id);
+ Family* getFamily(const std::string& id);
+ Marker* getMarker(const std::string& chrom, unsigned int loc);
+
+ unsigned int num_loci() const {return _markers.size();}
+ unsigned int num_pedigrees() const {return _families.size();}
+ unsigned int num_inds() const {return _samples.size();}
+
+ void sortMarkers();
+ void sortSamples();
+
+private:
+ DataSet(const DataSet& other);
+ DataSet& operator=(const DataSet& other);
+
+private:
+ template<typename T>
+ struct ci_less:std::binary_function<T,T,bool>
+ { bool operator() (const T& s1,const T& s2) const { return boost::ilexicographical_compare(s1,s2); }};
+
+ typedef std::map<std::string, Marker*, ci_less<std::string> > MarkerIDMap;
+
+ std::vector<Marker*> _markers;
+ std::vector<Sample*> _samples;
+ std::vector<Family*> _families;
+ MarkerIDMap _marker_map;
+ std::map<std::pair<unsigned short, unsigned int>, Marker*> _marker_pos_map;
+ std::map<std::pair<std::string, std::string>, Sample*> _sample_map;
+ std::map<std::string, Family*> _family_map;
+
+ std::map<const Sample*, unsigned int> _sample_idx_map;
+ std::map<std::string, std::pair<bool, std::deque<float> > > _trait_map;
+
+ unsigned int _marker_idx;
+
+ bool _biallelic;
+ bool _phased;
+
+};
+
+}
+}
+#endif
diff --git a/debian/docs b/method_lib/data/Family.cpp
similarity index 100%
rename from debian/docs
rename to method_lib/data/Family.cpp
diff --git a/method_lib/data/Family.h b/method_lib/data/Family.h
new file mode 100644
index 0000000..81b0371
--- /dev/null
+++ b/method_lib/data/Family.h
@@ -0,0 +1,96 @@
+#ifndef DATA_FAMILY_H
+#define DATA_FAMILY_H
+
+#include <deque>
+#include <vector>
+#include <string>
+#include <algorithm>
+
+#include <boost/iterator/iterator_facade.hpp>
+
+namespace PLATO{
+namespace Data{
+
+class Sample;
+
+class Family{
+public:
+
+ class const_member_iterator : public boost::iterator_facade<const_member_iterator, const Sample*, boost::forward_traversal_tag>{
+ public:
+ const_member_iterator(std::deque<Sample*>::const_iterator si,
+ const std::deque<Sample*>& samples,
+ const std::vector<bool>& enabled, bool all=true)
+ : _si(si), _samples(samples), _enabled(enabled), _all(all) {
+ while(_si != _samples.end() && (_all || !_enabled[_si - _samples.begin() + 1])){
+ ++_si;
+ }
+
+ }
+
+ // we need this b/c of the reference items in the class object... boo!
+ const_member_iterator& operator=(const_member_iterator other){
+ std::swap(*this, other);
+ return *this;
+ }
+
+ private:
+ friend class boost::iterator_core_access;
+
+ void increment(){
+ // NOTE: the increment is in the
+ while(_si != _samples.end() && ++_si != _samples.end()
+ && (_all || !_enabled[_si - _samples.begin() + 1]));
+ }
+ bool equal(const const_member_iterator& o) const {return _si == o._si;}
+
+ const Sample*& dereference() const { return _tmp = (*_si);}
+
+ mutable const Sample* _tmp;
+ std::deque<Sample*>::const_iterator _si;
+ const std::deque<Sample*>& _samples;
+ const std::vector<bool>& _enabled;
+ bool _all;
+ };
+
+public:
+ Family(const std::string& fid) : _fam_id(fid) {_founder.push_back(true);}
+
+private:
+ Family(const Family& o);
+ Family& operator=(const Family& o);
+
+public:
+
+ void addFounder(Sample* mem) {addMember(mem, true);}
+ void addNonFounder(Sample* mem) {addMember(mem, false);};
+
+ void setEnabled(bool enabled=true){_founder[0] = enabled;}
+
+ bool isEnabled() const {return _founder[0];}
+ const std::string& getFamID() const {return _fam_id;}
+
+ const_member_iterator beginMembers(bool nonfounders=true) const{
+ return const_member_iterator(_members.begin(), _members, _founder, nonfounders);
+ }
+
+ const_member_iterator endMembers() const{
+ return const_member_iterator(_members.end(), _members, _founder);
+ }
+
+
+
+private:
+ void addMember(Sample* mem, bool found){_members.push_back(mem); _founder.push_back(found);}
+
+ std::deque<Sample*> _members;
+ // 1st bit is if the family is enabled as a whole
+ std::vector<bool> _founder;
+
+ std::string _fam_id;
+
+};
+
+}
+}
+#endif
diff --git a/method_lib/data/Marker.cpp b/method_lib/data/Marker.cpp
new file mode 100644
index 0000000..a495c78
--- /dev/null
+++ b/method_lib/data/Marker.cpp
@@ -0,0 +1,118 @@
+#include "Marker.h"
+
+#include "DataSet.h"
+#include "Sample.h"
+
+#include <algorithm>
+
+using std::string;
+using std::find;
+using std::vector;
+
+using PLATO::Utility::InputManager;
+
+namespace PLATO{
+namespace Data{
+
+string Marker::_missing_allele = "0";
+
+Marker::Marker(const string& chr, unsigned int loc, const string& id, unsigned int idx) :
+ _chr(InputManager::chrStringToInt(chr) | ENABLED_MASK), _loc(loc), _idx(idx), _id(id){
+ _ref_idx = _alt_idx = static_cast<unsigned char>(-1);
+}
+
+unsigned int Marker::addAllele(const string& allele){
+ vector<string>::const_iterator allele_itr = find(_alleles.begin(), _alleles.end(), allele);
+ unsigned int idx = allele_itr - _alleles.begin();
+ if(allele_itr == _alleles.end()){
+ _alleles.push_back(allele);
+ if(_alleles.size() == 1){
+ _ref_idx = 0;
+ }else if(_alleles.size() == 2){
+ _alt_idx = 1;
+ }
+ }
+ return idx;
+}
+
+bool Marker::setRefAllele(const string& allele){
+ bool to_ret = false;
+ vector<string>::const_iterator itr = find(_alleles.begin(), _alleles.end(), allele);
+ if(itr != _alleles.end()){
+ to_ret = setRefAlleleIdx(itr - _alleles.begin());
+ }
+ return to_ret;
+}
+
+bool Marker::setRefAlleleIdx(unsigned char idx){
+ bool to_ret = false;
+ if(idx < _alleles.size()){
+ unsigned char old_ref = _ref_idx;
+ _ref_idx = idx;
+ if(_ref_idx == _alt_idx){
+ _alt_idx = old_ref;
+ }
+ to_ret = true;
+ }
+ return to_ret;
+}
+
+/*
+bool Marker::setAltAllele(const string& allele){
+ bool to_ret = false;
+ vector<string>::const_iterator itr = find(_alleles.begin(), _alleles.end(), allele);
+ if(_alleles.size() > 1 && itr != _alleles.end()){
+ unsigned int old_alt = _alt_idx;
+ _alt_idx = itr - _alleles.begin();
+ if(_ref_idx == _alt_idx){
+ _ref_idx = old_alt;
+ }
+ to_ret = true;
+ }
+ return to_ret;
+}
+*/
+
+float Marker::calcMAF(const DataSet& ds) const{
+ float af = calcRefAF(ds);
+ return _maf = std::min(af, 1-af);
+}
+
+float Marker::calcRefAF(const DataSet& ds) const{
+ DataSet::const_sample_iterator si = ds.beginSample();
+ int n_sample = 0;
+ int n_ref_allele = 0;
+ while(si != ds.endSample()){
+ n_ref_allele += 2-(*si)->getAdditiveGeno(*this);
+ ++n_sample;
+ ++si;
+ }
+
+ float af = n_ref_allele / static_cast<float>(2 * n_sample);
+
+ return af;
+}
+
+unsigned char Marker::majorAlleleIdx(const DataSet& ds) const{
+ vector<unsigned int> af_sum(_alleles.size(),0);
+
+ DataSet::const_sample_iterator si = ds.beginSample();
+ std::pair<unsigned char, unsigned char> geno;
+
+ while(si != ds.endSample()){
+ geno = (*si)->getGeno(*this);
+ if(geno.first != Sample::missing_allele){
+ ++af_sum[geno.first];
+ }
+ if(geno.second != Sample::missing_allele){
+ ++af_sum[geno.second];
+ }
+ ++si;
+ }
+
+ return std::distance(af_sum.begin(), std::max_element(af_sum.begin(), af_sum.end()));
+
+}
+
+}
+}
diff --git a/method_lib/data/Marker.h b/method_lib/data/Marker.h
new file mode 100644
index 0000000..8070905
--- /dev/null
+++ b/method_lib/data/Marker.h
@@ -0,0 +1,170 @@
+#ifndef DATA_MARKER_H
+#define DATA_MARKER_H
+
+#include <string>
+#include <vector>
+
+#include "util/InputManager.h"
+#include "Sample.h"
+
+namespace PLATO{
+namespace Data{
+
+class DataSet;
+
+class Marker{
+
+public:
+ Marker(const std::string& chrom, unsigned int loc, const std::string& id, unsigned int idx);
+
+ /*!
+ * Adds an allele to the Marker. Returns the index of the given allele.
+ * (Note: runs in O(n) time)
+ */
+ unsigned int addAllele(const std::string& allele);
+ /*!
+ * Sets the given allele as the referent allele. Returns false if the given
+ * allele is not found in the Marker
+ */
+ // NOTE: if we allow this, we have to go through and recode all the samples!
+ //bool setRefAllele(const std::string& allele);
+
+ /*!
+ * Sets the given allele as the alternate allele (in biallelic analysis).
+ * Returns false if only one allele is available or if the given allele is
+ * not found in the allele list.
+ */
+ // see note above
+ //bool setAltAllele(const std::string& allele);
+
+ bool setMAF(float maf){return -1 != (_maf = (maf >= 0 && maf <= 1) ? maf : -1);}
+
+ void setEnabled(bool enabled=true) {_chr = getChrom() | (ENABLED_MASK * enabled); }
+
+ bool issetMAF() const {return _maf >= 0 && _maf <= 1;};
+ float getMAF() const {return _maf;}
+ float calcMAF(const DataSet& ds) const;
+ /*!
+ * Calculates the allele frequency of the referent allele
+ */
+ float calcRefAF(const DataSet& ds) const;
+ /*!
+ * Finds the index of the major allele
+ */
+ unsigned char majorAlleleIdx(const DataSet& ds) const;
+
+ /*!
+ * Returns the reference allele, or "0" if no reference allele is available.
+ * Note that the first allele added is by default the reference allele.
+ */
+ const std::string& getRefAllele() const{
+ return _ref_idx == Sample::missing_allele ? _missing_allele : _alleles[_ref_idx];
+ }
+
+ /*!
+ * Returns the alternate allele; the first available allele (as added) which
+ * is not the reference allele. Returns "0" if no available allele
+ */
+ const std::string& getAltAllele() const{
+ return _alt_idx == Sample::missing_allele ? _missing_allele : _alleles[_alt_idx];
+ }
+
+ const std::string& getAllele(unsigned char idx) const{
+ return idx >= _alleles.size() ? _missing_allele : _alleles[idx];
+ }
+
+ bool setRefAllele(const std::string& allele);
+ bool setRefAlleleIdx(unsigned char idx);
+
+ unsigned char getRefIdx() const{
+ return _ref_idx;
+ }
+
+ unsigned char getAltIdx() const{
+ return _alt_idx;
+ }
+
+ unsigned int getNumAlleles() const {
+ return _alleles.size();
+ }
+
+ /*!
+ * Returns the index into the chromosome array
+ */
+ unsigned int getIndex() const {return _idx;}
+
+ /*!
+ * Returns the chromosome
+ */
+ unsigned short getChrom() const {return _chr & ~(ENABLED_MASK);}
+
+ /*!
+ * Returns the chromosome string
+ */
+ const std::string& getChromStr() const {return PLATO::Utility::InputManager::chrIntToString(getChrom());}
+
+ /*!
+ * Returns the location
+ */
+ unsigned int getLoc() const {return _loc;}
+
+ /*!
+ * Returns the ID (usually an RSID)
+ */
+ const std::string& getID() const {return _id;}
+
+ /*!
+ * Sort by chromosome, then position
+ */
+ bool operator<(const Marker& o) const {
+ return (getChrom() == o.getChrom()) ? (_loc < o._loc) : (getChrom() < o.getChrom());
+ }
+
+ bool isEnabled() const {return _chr & ENABLED_MASK; }
+
+ static const std::string& getMissingAllele() {return _missing_allele;}
+
+
+
+private:
+
+
+ // NOTE: the most significant bit of _chr is the enabled bit
+ unsigned short _chr;
+ unsigned char _ref_idx;
+ unsigned char _alt_idx;
+ unsigned int _loc;
+ // NOTE: this must NEVER change!! It is the index into the genotype memory array!
+ const unsigned int _idx;
+ mutable float _maf;
+ std::string _id;
+ std::vector<std::string> _alleles;
+
+ static std::string _missing_allele;
+ static const unsigned short ENABLED_MASK = 1 << (sizeof(unsigned short)*8 - 1);
+
+};
+
+}
+}
+
+// define an ordering for Marker pointers
+namespace std{
+template<>
+struct less<PLATO::Data::Marker*> {
+ bool operator()(const PLATO::Data::Marker* x,
+ const PLATO::Data::Marker* y) const {
+ return (y != 0 && x != 0) ? (*x) < (*y) : y < x;
+ }
+};
+
+template<>
+struct less<const PLATO::Data::Marker*> {
+ bool operator()(const PLATO::Data::Marker* x,
+ const PLATO::Data::Marker* y) const {
+ return (y != 0 && x != 0) ? (*x) < (*y) : y < x;
+ }
+};
+}
+
+#endif
diff --git a/method_lib/data/PhasedBiallelicSample.cpp b/method_lib/data/PhasedBiallelicSample.cpp
new file mode 100644
index 0000000..b94c73b
--- /dev/null
+++ b/method_lib/data/PhasedBiallelicSample.cpp
@@ -0,0 +1,77 @@
+/*
+ * PhasedBiallelicSample.cpp
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#include "PhasedBiallelicSample.h"
+
+#include "Marker.h"
+
+using std::string;
+using std::pair;
+using std::make_pair;
+
+namespace PLATO{
+namespace Data{
+
+PhasedBiallelicSample::PhasedBiallelicSample(const string& famid, const string& id, unsigned int n_genos) :
+ Sample(famid, id) {
+
+ _genotype.resize(2*n_genos);
+ _missing.resize(2*n_genos);
+ // set everything to missing
+ _missing.set();
+}
+
+void PhasedBiallelicSample::appendGenotype(unsigned char geno1, unsigned char geno2){
+
+ _missing.push_back(geno1 == missing_allele);
+ _missing.push_back(geno2 == missing_allele);
+
+ _genotype.push_back(geno1);
+ _genotype.push_back(geno2);
+}
+
+void PhasedBiallelicSample::appendMissingGenotype(){
+ // If either is "missing", then both are missing!
+ _missing.push_back(true);
+ _missing.push_back(true);
+
+ _genotype.push_back(0);
+ _genotype.push_back(0);
+}
+
+void PhasedBiallelicSample::setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2){
+ unsigned int pos = m.getIndex();
+
+ _missing.set(2*pos, (geno1 == missing_allele));
+ _missing.set(2*pos + 1, (geno2 == missing_allele));
+
+ _genotype.set(2*pos, geno1);
+ _genotype.set(2*pos + 1, geno2);
+}
+
+void PhasedBiallelicSample::setMissingGenotype(const Marker& m){
+ unsigned int pos = m.getIndex();
+ // If either is "missing", then both are missing!
+ _missing.set(2*pos);
+ _missing.set(2*pos + 1);
+
+ // NOTE: we don't care what the genotype is at this point!
+}
+
+bool PhasedBiallelicSample::isMissing(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ return _missing[2*pos] || _missing[2*pos + 1];
+}
+
+pair<unsigned char, unsigned char> PhasedBiallelicSample::getGeno(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ return make_pair(_missing[2*pos] ? missing_allele : _genotype[2*pos],
+ _missing[2*pos+1] ? missing_allele : _genotype[2*pos+1] );
+}
+
+}
+}
diff --git a/method_lib/data/PhasedBiallelicSample.h b/method_lib/data/PhasedBiallelicSample.h
new file mode 100644
index 0000000..ed09e89
--- /dev/null
+++ b/method_lib/data/PhasedBiallelicSample.h
@@ -0,0 +1,42 @@
+/*
+ * PhasedBiallelicSample.h
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#ifndef DATA_PHASED_BIALLELICSAMPLE_H
+#define DATA_PHASED_BIALLELICSAMPLE_H
+
+#include "Sample.h"
+
+#include <boost/dynamic_bitset.hpp>
+
+namespace PLATO {
+namespace Data{
+
+class PhasedBiallelicSample : public Sample {
+
+public:
+ PhasedBiallelicSample(const std::string& famid, const std::string& id, unsigned int n_genos);
+
+ virtual void appendGenotype(unsigned char geno1, unsigned char geno2);
+ virtual void appendMissingGenotype();
+ virtual void setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2);
+ virtual void setMissingGenotype(const Marker& m);
+ virtual bool isMissing(const Marker&) const;
+ virtual std::pair<unsigned char, unsigned char> getGeno(const Marker&) const;
+
+ virtual ~PhasedBiallelicSample(){}
+
+private:
+
+ boost::dynamic_bitset<> _genotype;
+ boost::dynamic_bitset<> _missing;
+
+};
+
+}
+}
+
+#endif /* PHASEDBIALLELICSAMPLE_H_ */
diff --git a/method_lib/data/PhasedPolyallelicSample.cpp b/method_lib/data/PhasedPolyallelicSample.cpp
new file mode 100644
index 0000000..ad28dd9
--- /dev/null
+++ b/method_lib/data/PhasedPolyallelicSample.cpp
@@ -0,0 +1,58 @@
+/*
+ * PhasedPolyallelicSample.cpp
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#include "PhasedPolyallelicSample.h"
+
+#include "Marker.h"
+
+using std::string;
+using std::pair;
+
+namespace PLATO{
+namespace Data{
+
+PhasedPolyallelicSample::PhasedPolyallelicSample(const string& famid, const string& id, unsigned int n_genos) :
+ Sample(famid, id) {
+ for(unsigned int i=0; i<2*n_genos; i++){
+ _genotype.push_back(missing_allele);
+ }
+}
+
+void PhasedPolyallelicSample::appendGenotype(unsigned char geno1, unsigned char geno2){
+ _genotype.push_back(geno1);
+ _genotype.push_back(geno2);
+}
+
+void PhasedPolyallelicSample::appendMissingGenotype(){
+ _genotype.push_back(missing_allele);
+ _genotype.push_back(missing_allele);
+}
+
+void PhasedPolyallelicSample::setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2){
+ unsigned int pos = m.getIndex();
+ _genotype[2*pos] = geno1;
+ _genotype[2*pos + 1] = geno2;
+}
+
+void PhasedPolyallelicSample::setMissingGenotype(const Marker& m){
+ unsigned int pos = m.getIndex();
+ _genotype[2*pos] = missing_allele;
+ _genotype[2*pos + 1] = missing_allele;
+}
+
+bool PhasedPolyallelicSample::isMissing(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ return _genotype[2*pos] == missing_allele || _genotype[2*pos + 1] == missing_allele;
+}
+
+pair<unsigned char, unsigned char> PhasedPolyallelicSample::getGeno(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ return std::make_pair(_genotype[2*pos], _genotype[2*pos + 1]);
+}
+
+}
+}
diff --git a/method_lib/data/PhasedPolyallelicSample.h b/method_lib/data/PhasedPolyallelicSample.h
new file mode 100644
index 0000000..f57aed0
--- /dev/null
+++ b/method_lib/data/PhasedPolyallelicSample.h
@@ -0,0 +1,39 @@
+/*
+ * PhasedPolyallelicSample.h
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#ifndef DATA_PHASED_POLYALLELIC_SAMPLE_H
+#define DATA_PHASED_POLYALLELIC_SAMPLE_H
+
+#include "Sample.h"
+
+#include <deque>
+
+namespace PLATO {
+namespace Data{
+
+class PhasedPolyallelicSample : public Sample {
+public:
+ PhasedPolyallelicSample(const std::string& famid, const std::string& id, unsigned int n_genos);
+
+ virtual void appendGenotype(unsigned char geno1, unsigned char geno2);
+ virtual void appendMissingGenotype();
+ virtual void setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2);
+ virtual void setMissingGenotype(const Marker& m);
+ virtual bool isMissing(const Marker&) const;
+ virtual std::pair<unsigned char, unsigned char> getGeno(const Marker&) const;
+
+ virtual ~PhasedPolyallelicSample(){}
+
+private:
+
+ std::deque<unsigned char> _genotype;
+};
+
+}
+}
+
+#endif /* PHASEDPOLYALLELICSAMPLE_H_ */
diff --git a/method_lib/data/PolyallelicSample.cpp b/method_lib/data/PolyallelicSample.cpp
new file mode 100644
index 0000000..1ca10c8
--- /dev/null
+++ b/method_lib/data/PolyallelicSample.cpp
@@ -0,0 +1,71 @@
+/*
+ * PolyallelicSample.cpp
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#include "PolyallelicSample.h"
+
+#include "Marker.h"
+
+using std::string;
+using std::pair;
+using std::make_pair;
+
+namespace PLATO{
+namespace Data{
+
+PolyallelicSample::PolyallelicSample(const string& famid, const string& id, unsigned int n_genos) :
+ Sample(famid, id) {
+ for(unsigned int i=0; i<2*n_genos; i++){
+ _genotype.push_back(missing_allele);
+ }
+}
+
+void PolyallelicSample::appendGenotype(unsigned char geno1, unsigned char geno2){
+
+ // If either is "missing", then both are missing!
+ if(geno1 == missing_allele || geno2 == missing_allele){
+ appendMissingGenotype();
+ }else{
+ _genotype.push_back(geno1);
+ _genotype.push_back(geno2);
+ }
+}
+
+void PolyallelicSample::appendMissingGenotype(){
+ _genotype.push_back(missing_allele);
+ _genotype.push_back(missing_allele);
+}
+
+void PolyallelicSample::setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2){
+
+ // If either is "missing", then both are missing!
+ if(geno1 == missing_allele || geno2 == missing_allele){
+ setMissingGenotype(m);
+ }else{
+ unsigned int pos = m.getIndex();
+ _genotype[2*pos] = geno1;
+ _genotype[2*pos + 1] = geno2;
+ }
+}
+
+void PolyallelicSample::setMissingGenotype(const Marker& m){
+ unsigned int pos = m.getIndex();
+ _genotype[2*pos] = missing_allele;
+ _genotype[2*pos + 1] = missing_allele;
+}
+
+bool PolyallelicSample::isMissing(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ return _genotype[2*pos] == missing_allele || _genotype[2*pos + 1] == missing_allele;
+}
+
+pair<unsigned char, unsigned char> PolyallelicSample::getGeno(const Marker& m) const{
+ unsigned int pos = m.getIndex();
+ return make_pair(_genotype[2*pos], _genotype[2*pos + 1]);
+}
+
+}
+}
diff --git a/method_lib/data/PolyallelicSample.h b/method_lib/data/PolyallelicSample.h
new file mode 100644
index 0000000..c9bd58e
--- /dev/null
+++ b/method_lib/data/PolyallelicSample.h
@@ -0,0 +1,38 @@
+/*
+ * PolyallelicSample.h
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#ifndef DATA_POLYALLELIC_SAMPLE_H
+#define DATA_POLYALLELIC_SAMPLE_H
+
+#include "Sample.h"
+
+namespace PLATO{
+namespace Data{
+
+class PolyallelicSample : public Sample {
+public:
+ PolyallelicSample(const std::string& famid, const std::string& id, unsigned int n_genos);
+
+ virtual void appendGenotype(unsigned char geno1, unsigned char geno2);
+ virtual void appendMissingGenotype();
+ virtual void setGenotype(const Marker& m, unsigned char geno1, unsigned char geno2);
+ virtual void setMissingGenotype(const Marker& m);
+ virtual bool isMissing(const Marker&) const;
+ virtual std::pair<unsigned char, unsigned char> getGeno(const Marker&) const;
+
+ virtual ~PolyallelicSample(){}
+
+private:
+
+ std::deque<unsigned char> _genotype;
+
+};
+
+}
+}
+
+#endif /* POLYALLELICSAMPLE_H_ */
diff --git a/method_lib/data/Sample.cpp b/method_lib/data/Sample.cpp
new file mode 100644
index 0000000..53d4b8b
--- /dev/null
+++ b/method_lib/data/Sample.cpp
@@ -0,0 +1,57 @@
+#include "Sample.h"
+
+#include <limits>
+
+#include "Marker.h"
+#include "DataSet.h"
+
+#include "PhasedBiallelicSample.h"
+#include "BiallelicSample.h"
+#include "PolyallelicSample.h"
+#include "PhasedPolyallelicSample.h"
+
+using std::string;
+using std::set;
+
+namespace PLATO{
+namespace Data{
+
+const unsigned char Sample::missing_allele = static_cast<unsigned char>(-1);
+const std::pair<unsigned char, unsigned char> Sample::missing_geno = std::make_pair(Sample::missing_allele, Sample::missing_allele);
+
+Sample::Sample(const string& famid, const string& id) :
+ _famid(famid), _id(id), _mom(NULL), _dad(NULL),
+ _pheno(std::numeric_limits<float>::quiet_NaN()),
+ _sex_known(false), _affected_known(false), _founder(true), _enabled(true){
+}
+
+Sample* Sample::create(const DataSet& ds, const string& famid, const string& id, unsigned int n_genos){
+ if(ds.isPhased()){
+ if(ds.isBiallelic()){
+ return new PhasedBiallelicSample(famid, id, n_genos);
+ }else{
+ return new PhasedPolyallelicSample(famid, id, n_genos);
+ }
+ }else{
+ if(ds.isBiallelic()){
+ return new BiallelicSample(famid, id, n_genos);
+ }else{
+ return new PolyallelicSample(famid, id, n_genos);
+ }
+ }
+}
+
+unsigned char Sample::getAdditiveGeno(const Marker& m) const{
+ unsigned char geno = missing_allele;
+
+ std::pair<unsigned char, unsigned char> allele_pair = getGeno(m);
+
+ if(allele_pair.first != missing_allele && allele_pair.second != missing_allele){
+ geno = (allele_pair.first != m.getRefIdx()) + (allele_pair.second != m.getRefIdx());
+ }
+
+ return geno;
+}
+
+}
+}
diff --git a/method_lib/data/Sample.h b/method_lib/data/Sample.h
new file mode 100644
index 0000000..c9f396e
--- /dev/null
+++ b/method_lib/data/Sample.h
@@ -0,0 +1,129 @@
+#ifndef DATA_SAMPLE_H
+#define DATA_SAMPLE_H
+
+#include <deque>
+#include <string>
+#include <set>
+
+#include <boost/unordered_set.hpp>
+
+#include <utility>
+
+namespace PLATO{
+namespace Data{
+
+class DataSet;
+class Marker;
+
+class Sample{
+
+public:
+ virtual ~Sample(){}
+
+ typedef boost::unordered_set<Sample*>::const_iterator const_child_iterator;
+
+protected:
+ Sample(const std::string& famid, const std::string& id);
+
+public:
+ static Sample* create(const DataSet& ds, const std::string& famid, const std::string& id, unsigned int n_genos=0);
+ //static Sample* create(const std::string& id, unsigned int n_genos=0){return create(id, id, n_genos);}
+
+private:
+ // No copying or assignment!!
+ Sample(const Sample&);
+ Sample& operator=(const Sample&);
+
+public:
+ bool operator<(const Sample& o) const{
+ return std::make_pair(_id, _famid) < std::make_pair(o._id, o._famid);
+ }
+
+ virtual void appendGenotype(unsigned char geno1, unsigned char geno2) = 0;
+ virtual void setGenotype(const Marker&, unsigned char geno1, unsigned char geno2) = 0;
+ virtual void setMissingGenotype(const Marker&) = 0;
+ virtual void appendMissingGenotype() = 0;
+ virtual bool isMissing(const Marker&) const = 0;
+ virtual std::pair<unsigned char, unsigned char> getGeno(const Marker&) const = 0;
+
+ unsigned char getAdditiveGeno(const Marker&) const;
+
+ bool addMother(Sample* mom) {return mom == (_mom = (_mom == NULL) ? mom : _mom);}
+ bool addFather(Sample* dad) {return dad == (_dad = (_dad == NULL) ? dad : _dad);}
+ bool addChild(Sample* child) {return _children.insert(child).second;}
+
+ void setFounder(bool founder){_founder = founder;}
+ void setAffected(bool affected){_affected_known = true; _pheno = _affected = affected;}
+ void setGender(bool is_male){_sex_known = true; _male = is_male;}
+ void setPheno(float pheno){_pheno = pheno;}
+
+ const std::string& getFID() const {return _famid;}
+ const std::string& getID() const {return _id;}
+
+ Sample* getFather() const {return _dad;}
+ Sample* getMother() const {return _mom;}
+
+ const_child_iterator beginChild() const {return _children.begin();}
+ const_child_iterator endChild() const {return _children.end();}
+
+ bool isFounder() const {return _founder;}
+ bool isGenderKnown() const {return _sex_known;}
+ bool isMale() const {return _sex_known && _male;}
+ bool isFemale() const {return _sex_known && !_male;}
+ bool isAffected() const {return _affected_known && _affected;}
+ bool isAffectedKnown() const {return _affected_known;}
+
+ float getPheno() const {return _pheno;}
+
+ void setEnabled(bool enabled=true){_enabled = enabled;}
+ bool isEnabled() const {return _enabled;}
+
+private:
+
+ //! Family ID
+ std::string _famid;
+ //! Individual ID
+ std::string _id;
+
+ Sample* _mom;
+ Sample* _dad;
+ boost::unordered_set<Sample*> _children;
+
+ float _pheno;
+
+ bool _sex_known;
+ bool _affected_known;
+ bool _male;
+ bool _affected;
+ bool _founder;
+ bool _enabled;
+
+
+public:
+ static const unsigned char missing_allele;
+ static const std::pair<unsigned char, unsigned char> missing_geno;
+};
+
+}
+}
+
+// define an ordering for Sample pointers
+namespace std{
+template<>
+struct less<PLATO::Data::Sample*> {
+ bool operator()(const PLATO::Data::Sample* x,
+ const PLATO::Data::Sample* y) const {
+ return (y != 0 && x != 0) ? (*x) < (*y) : y < x;
+ }
+};
+
+template<>
+struct less<const PLATO::Data::Sample*> {
+ bool operator()(const PLATO::Data::Sample* x,
+ const PLATO::Data::Sample* y) const {
+ return (y != 0 && x != 0) ? (*x) < (*y) : y < x;
+ }
+};
+}
+
+#endif
diff --git a/method_lib/util/CommandLineParser.h b/method_lib/util/CommandLineParser.h
new file mode 100644
index 0000000..12467be
--- /dev/null
+++ b/method_lib/util/CommandLineParser.h
@@ -0,0 +1,347 @@
+/*
+ * CommandLineParser.hpp
+ *
+ * Created on: Nov 20, 2013
+ * Author: jrw32
+ */
+
+#ifndef UTILITY_COMMANDLINEPARSER_H
+#define UTILITY_COMMANDLINEPARSER_H
+
+#include <boost/program_options.hpp>
+
+#include <boost/detail/workaround.hpp>
+
+#include <boost/function.hpp>
+#include <boost/bind.hpp>
+
+#include <vector>
+#include <string>
+
+namespace PLATO{
+namespace Utility{
+
+
+template<class charT>
+class custom_command_line_parser : public boost::program_options::detail::cmdline {
+public:
+ /** Creates a command line parser for the specified arguments
+ list. The 'args' parameter should not include program name.
+ */
+ custom_command_line_parser(const std::vector<
+ std::basic_string<charT> >& args);
+ /** Creates a command line parser for the specified arguments
+ list. The parameters should be the same as passed to 'main'.
+ */
+ custom_command_line_parser(int argc, const charT* const argv[]);
+
+ /** Sets options descriptions to use. */
+ custom_command_line_parser& options(const boost::program_options::options_description& desc);
+ /** Sets positional options description to use. */
+ custom_command_line_parser& positional(
+ const boost::program_options::positional_options_description& desc);
+
+ /** Sets the command line style. */
+ custom_command_line_parser& style(int);
+ /** Sets the extra parsers. */
+ custom_command_line_parser& extra_parser(boost::program_options::ext_parser);
+
+ /** Parses the options and returns the result of parsing.
+ Throws on error.
+ */
+ boost::program_options::basic_parsed_options<charT> run();
+
+ /** Specifies that unregistered options are allowed and should
+ be passed though. For each command like token that looks
+ like an option but does not contain a recognized name, an
+ instance of basic_option<charT> will be added to result,
+ with 'unrecognized' field set to 'true'. It's possible to
+ collect all unrecognized options with the 'collect_unrecognized'
+ funciton.
+ */
+ custom_command_line_parser& allow_unregistered();
+
+ using boost::program_options::detail::cmdline::style_parser;
+
+ custom_command_line_parser& extra_style_parser(style_parser s);
+
+private:
+ const boost::program_options::options_description* m_desc;
+};
+
+typedef custom_command_line_parser<char> CommandLineParser;
+typedef custom_command_line_parser<wchar_t> UnicodeCommandLineParser;
+
+template<class charT>
+custom_command_line_parser<charT>::
+custom_command_line_parser(const std::vector<
+ std::basic_string<charT> >& xargs)
+ : boost::program_options::detail::cmdline(boost::program_options::to_internal(xargs))
+{}
+
+
+template<class charT>
+custom_command_line_parser<charT>::
+custom_command_line_parser(int argc, const charT* const argv[])
+: boost::program_options::detail::cmdline(
+ // Explicit template arguments are required by gcc 3.3.1
+ // (at least mingw version), and do no harm on other compilers.
+ boost::program_options::to_internal(boost::program_options::detail::make_vector<charT, const charT* const*>(argv+1, argv+argc+!argc)))
+{}
+
+
+template<class charT>
+custom_command_line_parser<charT>&
+custom_command_line_parser<charT>::options(const boost::program_options::options_description& desc)
+{
+ boost::program_options::detail::cmdline::set_options_description(desc);
+ m_desc = &desc;
+ return *this;
+}
+
+template<class charT>
+custom_command_line_parser<charT>&
+custom_command_line_parser<charT>::positional(
+ const boost::program_options::positional_options_description& desc)
+{
+ boost::program_options::detail::cmdline::set_positional_options(desc);
+ return *this;
+}
+
+template<class charT>
+custom_command_line_parser<charT>&
+custom_command_line_parser<charT>::style(int xstyle)
+{
+ boost::program_options::detail::cmdline::style(xstyle);
+ return *this;
+}
+
+template<class charT>
+custom_command_line_parser<charT>&
+custom_command_line_parser<charT>::extra_parser(boost::program_options::ext_parser ext)
+{
+ boost::program_options::detail::cmdline::set_additional_parser(ext);
+ return *this;
+}
+
+template<class charT>
+custom_command_line_parser<charT>&
+custom_command_line_parser<charT>::allow_unregistered()
+{
+ boost::program_options::detail::cmdline::allow_unregistered();
+ return *this;
+}
+
+template<class charT>
+custom_command_line_parser<charT>&
+custom_command_line_parser<charT>::extra_style_parser(style_parser s)
+{
+ boost::program_options::detail::cmdline::extra_style_parser(s);
+ return *this;
+}
+
+template<class charT>
+boost::program_options::basic_parsed_options<charT>
+custom_command_line_parser<charT>::run()
+{
+ using namespace boost::program_options;
+ using namespace boost::program_options::command_line_style;
+ using std::vector;
+ using std::string;
+
+ parsed_options super_result(m_desc);
+
+ // The parsing is done by having a set of 'style parsers'
+ // and trying then in order. Each parser is passed a vector
+ // of unparsed tokens and can consume some of them (by
+ // removing elements on front) and return a vector of options.
+ //
+ // We try each style parser in turn, untill some input
+ // is consumed. The returned vector of option may contain the
+ // result of just syntactic parsing of token, say --foo will
+ // be parsed as option with name 'foo', and the style parser
+ // is not required to care if that option is defined, and how
+ // many tokens the value may take.
+ // So, after vector is returned, we validate them.
+ assert(m_desc);
+
+ vector<style_parser> style_parsers;
+
+ if (m_style_parser)
+ style_parsers.push_back(m_style_parser);
+
+ if (m_additional_parser)
+ style_parsers.push_back(
+ boost::bind(&cmdline::handle_additional_parser, this, _1));
+
+ if (m_style & allow_long)
+ style_parsers.push_back(
+ boost::bind(&cmdline::parse_long_option, this, _1));
+
+ if ((m_style & allow_long_disguise))
+ style_parsers.push_back(
+ boost::bind(&cmdline::parse_disguised_long_option, this, _1));
+
+ if ((m_style & allow_short) && (m_style & allow_dash_for_short))
+ style_parsers.push_back(
+ boost::bind(&cmdline::parse_short_option, this, _1));
+
+ if ((m_style & allow_short) && (m_style & allow_slash_for_short))
+ style_parsers.push_back(boost::bind(&cmdline::parse_dos_option, this, _1));
+
+ style_parsers.push_back(boost::bind(&cmdline::parse_terminator, this, _1));
+
+ vector<option> result;
+ while(!args.empty())
+ {
+ bool ok = false;
+ for(unsigned i = 0; i < style_parsers.size(); ++i)
+ {
+ unsigned current_size = args.size();
+ vector<option> next = style_parsers[i](args);
+
+ // Check that option names
+ // are valid, and that all values are in place.
+ if (!next.empty())
+ {
+ vector<string> e;
+ for(unsigned k = 0; k < next.size()-1; ++k) {
+ finish_option(next[k], e, style_parsers);
+ }
+ // For the last option, pass the unparsed tokens
+ // so that they can be added to next.back()'s values
+ // if appropriate.
+ finish_option(next.back(), args, style_parsers);
+ for (unsigned j = 0; j < next.size(); ++j)
+ result.push_back(next[j]);
+ }
+
+ if (args.size() != current_size) {
+ ok = true;
+ break;
+ }
+ }
+
+ if (!ok) {
+ while(!args.empty()){
+ option opt;
+ opt.value.push_back(args[0]);
+ opt.original_tokens.push_back(args[0]);
+ result.push_back(opt);
+ args.erase(args.begin());
+ }
+ }
+ }
+
+ /* If an key option is followed by a positional option,
+ can can consume more tokens (e.g. it's multitoke option),
+ give those tokens to it. */
+ vector<option> result2;
+ for (unsigned i = 0; i < result.size(); ++i)
+ {
+ result2.push_back(result[i]);
+ option& opt = result2.back();
+
+ if (opt.string_key.empty())
+ continue;
+
+ const option_description* xd =
+ m_desc->find_nothrow(opt.string_key,
+ is_style_active(allow_guessing),
+ is_style_active(long_case_insensitive),
+ is_style_active(short_case_insensitive));
+ if (!xd)
+ continue;
+
+ unsigned min_tokens = xd->semantic()->min_tokens();
+ unsigned max_tokens = xd->semantic()->max_tokens();
+ if (min_tokens < max_tokens && opt.value.size() < max_tokens)
+ {
+ // This option may grab some more tokens.
+ // We only allow to grab tokens that are not already
+ // recognized as key options.
+
+ int can_take_more = max_tokens - opt.value.size();
+ unsigned j = i+1;
+ for (; can_take_more && j < result.size(); --can_take_more, ++j)
+ {
+ option& opt2 = result[j];
+ if (!opt2.string_key.empty())
+ break;
+
+ if (opt2.position_key == INT_MAX)
+ {
+ // We use INT_MAX to mark positional options that
+ // were found after the '--' terminator and therefore
+ // should stay positional forever.
+ break;
+ }
+
+ assert(opt2.value.size() == 1);
+
+ opt.value.push_back(opt2.value[0]);
+
+ assert(opt2.original_tokens.size() == 1);
+
+ opt.original_tokens.push_back(opt2.original_tokens[0]);
+ }
+ i = j-1;
+ }
+ }
+ result.swap(result2);
+
+
+ // Assign position keys to positional options.
+ int position_key = 0;
+ for(unsigned i = 0; i < result.size(); ++i) {
+ if (result[i].string_key.empty())
+ result[i].position_key = position_key++;
+ }
+
+ if (m_positional)
+ {
+ unsigned position = 0;
+ for (unsigned i = 0; i < result.size(); ++i) {
+ option& opt = result[i];
+ if (opt.position_key != -1) {
+ if (position >= m_positional->max_total_count())
+ {
+ boost::throw_exception(too_many_positional_options_error());
+ }
+ opt.string_key = m_positional->name_for_position(position);
+ ++position;
+ }
+ }
+ }
+
+ // set case sensitive flag
+ for (unsigned i = 0; i < result.size(); ++i) {
+ if (result[i].string_key.size() > 2 ||
+ (result[i].string_key.size() > 1 && result[i].string_key[0] != '-'))
+ {
+ // it is a long option
+ result[i].case_insensitive = is_style_active(long_case_insensitive);
+ }
+ else
+ {
+ // it is a short option
+ result[i].case_insensitive = is_style_active(short_case_insensitive);
+ }
+ }
+
+ super_result.options = result;
+
+ return super_result;
+
+
+
+ // Presense of parsed_options -> wparsed_options conversion
+ // does the trick.
+ //return basic_parsed_options<charT>(super_result);
+}
+
+}
+}
+
+#endif /* COMMANDLINEPARSER_HPP_ */
+
diff --git a/method_lib/util/DataLoader.cpp b/method_lib/util/DataLoader.cpp
new file mode 100644
index 0000000..f6f4b9b
--- /dev/null
+++ b/method_lib/util/DataLoader.cpp
@@ -0,0 +1,1340 @@
+/*
+ * DataLoader.cpp
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#include "DataLoader.h"
+
+#include "data/DataSet.h"
+#include "data/Family.h"
+#include "data/Sample.h"
+#include "data/Marker.h"
+
+#include "Logger.h"
+#include "InputManager.h"
+#include "ICompressedFile.h"
+
+#include <iostream>
+#include <fstream>
+#include <sstream>
+#include <stdexcept>
+#include <map>
+#include <set>
+#include <limits>
+#include <deque>
+#include <algorithm>
+
+#include <boost/algorithm/string.hpp>
+#include <boost/lexical_cast.hpp>
+#include <boost/filesystem.hpp>
+#include <boost/regex.hpp>
+
+using std::multimap;
+using std::map;
+using std::set;
+using std::string;
+using std::ifstream;
+using std::stringstream;
+using std::vector;
+using std::deque;
+using std::find;
+using std::pair;
+
+using PLATO::Data::Marker;
+using PLATO::Data::Sample;
+using PLATO::Data::DataSet;
+using PLATO::Data::Family;
+using PLATO::Utility::Logger;
+
+namespace po=boost::program_options;
+namespace fs=boost::filesystem;
+using po::value;
+using po::bool_switch;
+using boost::regex;
+using boost::regex_match;
+using boost::algorithm::split;
+
+namespace PLATO{
+namespace Utility{
+
+// Define the "Group Separator" string as the separation between FID and IID!
+// Do this b/c it's legal ASCII, but darn near impossible to include on the cmd line
+const string DataLoader::sampl_field_sep = "\x1d";
+
+DataLoader::DataLoader() : _map_others(false), _ped_genotype(true),
+ _ped_missing_geno("0"), input(UNKNOWN) {}
+
+po::options_description& DataLoader::addOptions(po::options_description& opts){
+ po::options_description data_opts("Data Input Options");
+
+ po::options_description plink_opts("PLINK file input options");
+
+ plink_opts.add_options()
+ ("file", value<string>(&file_base), "Filename base for reading PED/MAP files")
+ ("ped", value<string>(&ped_fn), "Filename of a PED file")
+ ("map", value<string>(&map_fn), "Filename of a MAP file")
+ ("bfile",value<string>(&bfile_base), "Filename base for reading BED/BIM/FAM files")
+ ("bed", value<string>(&bed_fn), "Filename of a BED file")
+ ("bim", value<string>(&bim_fn), "Filename of a BIM file")
+ ("fam", value<string>(&fam_fn), "Filename of a FAM file")
+ ("tfile",value<string>(&tfile_base), "Filename base for reading TPED/TFAM files")
+ ("tped", value<string>(&tped_fn), "Filename of a TPED file")
+ ("tfam", value<string>(&tfam_fn), "Filename of a TFAM file")
+ ("lfile", value<string>(&lfile_base), "Filename base for reading LGEN/MAP/FAM files")
+ ("lgen", value<string>(&lgen_fn), "Filename of an LGEN file")
+ ("no-sex", bool_switch(&_ped_no_gender), "PED file does not contain gender")
+ ("no-parents", bool_switch(&_ped_no_parents), "PED file does not contain parental information")
+ ("no-fid", bool_switch(&_ped_no_fid), "PED file does not contain fid")
+ ("no-pheno", bool_switch(&_ped_no_pheno), "PED file does not contain phenotype information")
+ ("map3", bool_switch(&_map_no_distance), "Specify 3-column MAP file format (no genetic distance)")
+ ("map-ref", bool_switch(&_map_ref), "Map file contains referent allele information")
+ ("map-alt", bool_switch(&_map_alt), "Map file contains alternate allele information")
+ ("control0", bool_switch(&_ped_control0), "Case/Control status is encoded as 0/1, not 1/2")
+ ("quant", bool_switch(&_quant), "Phenotype is a quantitative value, not case/control status (unparseable is converted to missing)")
+ ;
+
+ data_opts.add(plink_opts);
+
+ po::options_description beagle_opts("BEAGLE file input options");
+
+ beagle_opts.add_options()
+ ("beagle-prefix", value<string>(&beagle_prefix), "Prefix for all BEAGLE files")
+ ("beagle-suffix", value<string>(&beagle_suffix)->default_value("bgl"), "Suffix for all BEAGLE genotype files")
+ ("marker-suffix", value<string>(&marker_suffix)->default_value("markers"), "Suffix for all BEAGLE marker files")
+ ("beagle-files", value<vector<string> >(&beagle_fns)->composing(), "Comma-separated list of all BEAGLE genotype files")
+ ("marker-files", value<vector<string> >(&marker_fns)->composing(), "Comma-separated list of all BEAGLE marker files")
+ ("beagle-chroms", value<vector<string> >(&chroms)->composing(), "Comma-separated list of chromosomes corresponding to genotype/marker files")
+ ("trio", bool_switch(&bgl_trio), "Genotype data given is trio data")
+ ("pair", bool_switch(&bgl_pair), "Genotype data given is pair data")
+ ("bgl-phased", bool_switch(&bgl_phased), "Genotype data is phased")
+ ("bgl-poly", bool_switch(&bgl_poly), "Genotype data is polyallelic")
+ ("beagle-missing", value<string>(&bgl_missing_allele)->default_value("0"), "String for missing allele")
+ ;
+
+ data_opts.add(beagle_opts);
+
+ po::options_description vcf_opts("VCF file input options");
+
+ vcf_opts.add_options()
+ ("vcf-file", value<string>(&vcf_fn), "VCF file to load")
+ ("no-filter-marker", bool_switch(&no_filter_marker), "Load markers that fail a filter in the FILTER field")
+ ("no-filter-geno", bool_switch(&no_filter_geno), "Load genotypes that fail a filter in the FT annotation field")
+ ("vcf-phased", bool_switch(&vcf_phased), "Flag indicating that the VCF file is phased")
+ ("vcf-poly", bool_switch(&vcf_poly), "Flag indicating that the VCF file is polyalleleic")
+ ;
+
+ data_opts.add(vcf_opts);
+
+ po::options_description filter_opts("Pre-filtering options");
+ filter_opts.add_options()
+ ("chrom", value<vector<string> >(&chrom_list)->composing(), "Chromosome(s) to include")
+ ("bp-window", value<vector<string> >(&bp_window)->composing(), "Base pair window(s) to include")
+ ("incl-marker", value<vector<string> >(&incl_marker_str)->composing(), "Marker ID(s) to include")
+ ("excl-marker", value<vector<string> >(&excl_marker_str)->composing(), "Marker ID(s) to exclude")
+ ("incl-marker-fn", value<vector<string> >(&incl_marker_fns)->composing(), "File containing marker ID(s) to include")
+ ("excl-marker-fn", value<vector<string> >(&excl_marker_fns)->composing(), "File containing marker ID(s) to exclude")
+ ("incl-sample", value<vector<string> >(&incl_sample_str)->composing(), "Sample(s) to include")
+ ("excl-sample", value<vector<string> >(&excl_sample_str)->composing(), "Sample(s) to exclude")
+ ;
+
+ data_opts.add(filter_opts);
+
+ return opts.add(data_opts);
+}
+
+void DataLoader::parseOptions(const po::variables_map& vm){
+ if(vm.count("file")){
+ if(ped_fn.size() == 0){
+ ped_fn = file_base + ".ped";
+ }
+ if(map_fn.size() == 0){
+ map_fn = file_base + ".map";
+ }
+ }
+
+ if(vm.count("bfile")){
+ if(bed_fn.size() == 0){
+ bed_fn = bfile_base + ".bed";
+ }
+ if(bim_fn.size() == 0){
+ bim_fn = bfile_base + ".bim";
+ }
+ if(fam_fn.size() == 0){
+ fam_fn = bfile_base + ".fam";
+ }
+ }
+
+ if(vm.count("tfile")){
+ if(tped_fn.size() == 0){
+ tped_fn = tfile_base + ".tped";
+ }
+ if(tfam_fn.size() == 0){
+ tfam_fn = tfile_base + ".tfam";
+ }
+ }
+
+ if(vm.count("lfile")){
+ if(lgen_fn.size() == 0){
+ lgen_fn = lfile_base + ".lgen";
+ }
+ if(map_fn.size() == 0){
+ map_fn = lfile_base + ".map";
+ }
+ if(fam_fn.size() == 0){
+ fam_fn = lfile_base + ".fam";
+ }
+ }
+
+ _fns_provided[0] = beagle_fns.size() > 0;
+ _fns_provided[1] = marker_fns.size() > 0;
+ _fns_provided[2] = chroms.size() > 0;
+
+ if(_fns_provided.any()){
+ if(_fns_provided.count() != _fns_provided.size()){
+ Logger::log_err("ERROR: If you provide filenames for BEAGLE files, you must provide all genotype, marker, and chromosome files", true);
+ }
+
+ vector<string> tmp_fnvec;
+ InputManager::parseInput(beagle_fns, tmp_fnvec);
+ beagle_fns = tmp_fnvec;
+ tmp_fnvec.clear();
+ InputManager::parseInput(marker_fns, tmp_fnvec);
+ marker_fns = tmp_fnvec;
+ tmp_fnvec.clear();
+ InputManager::parseInput(chroms, tmp_fnvec);
+ chroms = tmp_fnvec;
+
+ if(beagle_fns.size() != marker_fns.size() || marker_fns.size() != chroms.size()){
+ Logger::log_err("ERROR: genotypes, markers, and chromosome lists must be the same size", true);
+ }
+ if(beagle_prefix.size() > 0){
+ Logger::log_err("WARNING: beagle files were given along with a beagle prefix, ignoring the prefix directive");
+ beagle_prefix = "";
+ }
+
+ } else if(beagle_prefix.size() > 0){
+
+ // OK, we need to build the file lists from directory listings
+ // also, we need to make sure that the chromosomes match!
+
+ // first, build a file object from the prefix (to include any directories)
+ fs::path prefix_dir = fs::absolute(beagle_prefix).parent_path();
+ if(!fs::is_directory(prefix_dir)){
+ Logger::log_err("ERROR: could not find the directory containing BEAGLE files", true);
+ }
+
+ set<string> beagle_chroms;
+ set<string> marker_chroms;
+ // now, list all files in the directory of the above path
+ fs::directory_iterator end_itr;
+
+ regex esc("[\\^\\.\\$\\|\\(\\)\\[\\]\\*\\+\\?\\/\\\\]");
+ const string rep("\\\\\\1&");
+ string bgl_prefix_regex = boost::regex_replace(fs::path(beagle_prefix).filename().string() + ".", esc, rep,boost::match_default | boost::format_sed);
+ string bgl_suffix_regex = boost::regex_replace("." + beagle_suffix, esc, rep, boost::match_default | boost::format_sed);
+ string bgl_marker_regex = boost::regex_replace("." + marker_suffix, esc, rep, boost::match_default | boost::format_sed);
+
+ regex bgl_re(bgl_prefix_regex + "(.*)" + bgl_suffix_regex + "\\.?(z|gz|bz)?");
+ regex marker_re(bgl_prefix_regex + "(.*)" + bgl_marker_regex + "\\.?(z|gz|bz)?");
+
+ boost::smatch match_obj;
+
+ for(fs::directory_iterator dir_itr(prefix_dir); dir_itr != end_itr; dir_itr++){
+ if(fs::is_regular_file(dir_itr->status())){
+ // check for regex of beagle file
+ if(regex_match(dir_itr->path().filename().string(), match_obj, bgl_re)){
+ beagle_chroms.insert(match_obj[1]);
+ // check for regex of marker file
+ } else if (regex_match(dir_itr->path().filename().string(), match_obj, marker_re)){
+ marker_chroms.insert(match_obj[1]);
+ }
+ }
+ }
+
+ if(!(beagle_chroms == marker_chroms)){
+ Logger::log_err("ERROR: Chromosomes for marker and genotype files do not match", true);
+ } else if(beagle_chroms.size() == 0){
+ Logger::log_err("ERROR: could not find BEAGLE genotype or marker files", true);
+ }else {
+
+ chroms.clear();
+ chroms.reserve(beagle_chroms.size());
+ chroms.insert(chroms.begin(), beagle_chroms.begin(), beagle_chroms.end());
+ beagle_fns.clear();
+ beagle_fns.reserve(beagle_chroms.size());
+ marker_fns.clear();
+ marker_fns.reserve(beagle_chroms.size());
+ for(unsigned int i=0; i<chroms.size(); i++){
+ beagle_fns.push_back(beagle_prefix + "." + chroms[i] + "." + beagle_suffix);
+ marker_fns.push_back(beagle_prefix + "." + chroms[i] + "." + marker_suffix);
+ }
+ }
+ }
+
+ // decide what the style of input we're reading
+ if(ped_fn.size() && map_fn.size()){
+ input = PED;
+ }else if(bed_fn.size() && bim_fn.size() && fam_fn.size()){
+ input = BED;
+ }else if(tped_fn.size() && tfam_fn.size()){
+ input = TPED;
+ }else if(lgen_fn.size() && map_fn.size() && fam_fn.size()){
+ input = LGEN;
+ }else if(beagle_fns.size()){
+ input = BEAGLE;
+ }else if(vcf_fn.size()){
+ input = VCF;
+ }
+
+ // load up some pre-filters, please!
+ if(chrom_list.size() > 0){
+ vector<string> all_chroms;
+ InputManager::parseInput(chrom_list,all_chroms);
+ for(unsigned int i=0; i<all_chroms.size(); i++){
+ unsigned short chr = InputManager::chrStringToInt(all_chroms[i]);
+ if(chr != 0){
+ chrom_ids.insert(chr);
+ }
+ }
+ // no sense taking up unneeded space
+ chrom_list.clear();
+ }
+
+ if(bp_window.size() > 0){
+ vector<string> all_window;
+ InputManager::parseInput(bp_window, all_window);
+
+ // fix this, please!!!
+ vector<string> single_window;
+ for(unsigned int i=0; i<all_window.size(); i++){
+ boost::algorithm::split(single_window, all_window[i], boost::is_any_of("-"));
+ if(single_window.size() != 2){
+ Logger::log_err("WARNING: Base pair window '" + all_window[i] +
+ "' does not have exactly one dash (-), ignoring.");
+ } else {
+ unsigned int start = std::numeric_limits<unsigned int>::max();
+ unsigned int stop = std::numeric_limits<unsigned int>::max();
+ bool good = true;
+ if(single_window[0] != ""){
+ stringstream(single_window[0].c_str()) >> start;
+ if(start == std::numeric_limits<unsigned int>::max()){
+ good = false;
+ Logger::log_err("WARNING: could not parse '" + single_window[0] + "', ignoring window.");
+ }
+ } else {
+ start = 0;
+ }
+
+ if(single_window[1] != ""){
+ stringstream(single_window[1].c_str()) >> stop;
+ if(stop == std::numeric_limits<unsigned int>::max()){
+ good = false;
+ Logger::log_err("WARNING: could not parse '" + single_window[0] + "', ignoring window.");
+ }
+ }
+
+ if(good){
+ bp_window_set.insert(std::make_pair(start, stop));
+ }
+ }
+ }
+
+ if(!bp_window_set.empty()){
+ // OK, now make sure everything is not overlapping
+ set<pair<unsigned int, unsigned int> >::iterator bp_it = bp_window_set.begin();
+ set<pair<unsigned int, unsigned int> >::iterator bp_next = ++bp_window_set.begin();
+
+ while(bp_next != bp_window_set.end()){
+ if((*bp_it).second >= (*bp_next).first){
+ // insert a new element (which I KNOW will go in between
+ // bp_it and bp_next!
+ bp_window_set.insert(std::make_pair((*bp_it).first, (*bp_next).second));
+ // erase and increment bp_it and bp_next
+ bp_window_set.erase(bp_it++);
+ bp_window_set.erase(bp_next++);
+ // NOTE: at this point bp_it will point to the newly inserted
+ // element, and bp_next will point to the next element!
+ } else{
+ ++bp_next;
+ ++bp_it;
+ }
+ }
+ }
+ }
+
+ readSampleList(incl_sample_str, incl_sample_set);
+ readSampleList(excl_sample_str, excl_sample_set);
+
+ InputManager::parseInput(incl_marker_str, incl_marker_set);
+ readMarkerFile(incl_marker_fns, incl_marker_set);
+ InputManager::parseInput(excl_marker_str, excl_marker_set);
+ readMarkerFile(excl_marker_fns, excl_marker_set);
+}
+
+void DataLoader::read(DataSet& ds){
+
+ ds_ptr = &ds;
+
+ // first, reading PED/MAP files
+ switch(input){
+ case PED:
+ readMap(map_fn);
+ readPed(ped_fn);
+ break;
+ case BED:
+ // the PED file no longer contains genotype information
+ _ped_genotype = false;
+ // the BIM file contains ref and alt information
+ _map_ref = _map_alt = true;
+
+ // NOTE: all the options dictating the map file format are still in play!
+ readMap(bim_fn);
+ readPed(fam_fn);
+ readBinPed(bed_fn);
+ break;
+ case TPED:
+ // No genotype information in the PED
+ _ped_genotype = false;
+
+ readPed(tfam_fn);
+ readTPed(tped_fn);
+ break;
+ case LGEN:
+ _ped_genotype = false;
+ readMap(map_fn);
+ readPed(fam_fn);
+ readLGen(lgen_fn);
+ break;
+ case BEAGLE:
+ readBeagle();
+ break;
+ case VCF:
+ readVCF();
+ break;
+ default:
+ Logger::log_err("Unknown input type", true);
+ }
+
+}
+
+
+void DataLoader::readMap(const string& fn){
+
+ ifstream input(fn.c_str());
+
+ if(!input.is_open()){
+ throw std::invalid_argument("Error opening map file: " + fn);
+ }
+
+ string line;
+
+ while(getline(input, line)){
+
+ stringstream s(line);
+
+ Marker* newMarker=parseMap(s);
+
+ // We return -1 if it's a line to ignore
+ if(newMarker != reinterpret_cast<Marker*>(-1)){
+ _marker_incl.push_back(newMarker != 0);
+ }
+
+ }
+
+ input.close();
+
+}
+
+void DataLoader::readPed(const string& fn){
+ // a listing of ID -> mother's ID (and father's ID, accordingly)
+ map<string, string> mom_map;
+ map<string, string> dad_map;
+
+ // a listing of ID -> samples
+ map<string, Sample*> id_map;
+
+ // a multiset of family ID -> individual ID
+ multimap<string, string> family_map;
+
+ ifstream input(fn.c_str());
+
+ if(!input.is_open()){
+ throw std::invalid_argument("Error opening pedfile: " + fn);
+ }
+
+ string line;
+
+ int lineno = -1;
+ while(getline(input, line)){
+ ++lineno;
+
+ stringstream s(line);
+
+ string fid;
+ s >> fid;
+
+ // skip empty lines and those beginning with #
+ if(fid.length() == 0 || fid[0] == '#'){
+ continue;
+ }
+
+ string iid;
+ string dad_id;
+ string mom_id;
+ string sex;
+ string pheno;
+
+ if(!_ped_no_fid){
+ s >> iid;
+ }else{
+ iid = fid;
+ fid = "";
+ }
+
+ if(!_ped_no_parents){
+ s >> dad_id;
+ s >> mom_id;
+ }
+
+ if(!_ped_no_gender){
+ s >> sex;
+ }
+
+ if(!_ped_no_pheno){
+ s >> pheno;
+ }
+
+ bool use = filterSample(iid, fid);
+
+ // check for filters at this point, before we add the sample
+ if(use){
+ Sample* samp;
+ if(!_ped_no_fid){
+ samp = ds_ptr->addSample(fid, iid, _marker_incl.count());
+ family_map.insert(std::make_pair(fid, iid));
+ }else{
+ samp = ds_ptr->addSample(iid, _marker_incl.count());
+ }
+
+ if(!_ped_no_gender){
+ if(sex == "1"){
+ samp->setGender(true);
+ }else if(sex == "2"){
+ samp->setGender(false);
+ }// anything other than 1/2 is unknown gender
+ }
+
+ if(!_ped_no_pheno){
+ if(_quant){
+ float f;
+ if(stringstream(pheno) >> f){
+ samp->setPheno(f);
+ }
+ } else {
+ // kept this way to preserve "unknown" status
+ if(pheno == (_ped_control0 ? "0" : "1")){
+ samp->setAffected(false);
+ }else if(pheno == (_ped_control0 ? "1" : "2")){
+ samp->setAffected(true);
+ }
+ }
+ }
+
+ if(!_ped_no_parents){
+ mom_map[iid] = mom_id;
+ dad_map[iid] = dad_id;
+ }
+
+ if (_ped_genotype) {
+ // Now, load up the genotypes
+ DataSet::marker_iterator mi = ds_ptr->beginMarker();
+ DataSet::marker_iterator mi_end = ds_ptr->endMarker();
+ for (unsigned int i = 0; i < _marker_incl.size(); i++) {
+ string g1, g2;
+ s >> g1;
+ s >> g2;
+ if (_marker_incl[i]) {
+ if (mi == mi_end) {
+ //This is a problem!!
+ Logger::log_err("Error: marker not loaded!", true);
+ }
+
+ parseSample(*mi, samp, g1, g2, false);
+
+ // Advance the marker
+ ++mi;
+ }
+ }
+ if (mi != mi_end) {
+ Logger::log_err("Error: not enough markers!", true);
+ }
+ }
+
+ }
+
+ _sample_incl.push_back(use);
+
+ }
+
+ input.close();
+
+ // If we had family IDs, add them now
+ multimap<string, string>::const_iterator fam_itr = family_map.begin();
+ Family* curr_fam_ptr = 0;
+ while(fam_itr != family_map.end()){
+ // Make sure the sample was created first
+ map<string, Sample*>::const_iterator samp_itr = id_map.find((*fam_itr).second);
+
+ if (samp_itr != id_map.end()){
+ if(!curr_fam_ptr || curr_fam_ptr->getFamID() != (*fam_itr).first) {
+ curr_fam_ptr = ds_ptr->addFamily((*fam_itr).first);
+ }
+
+ // Check for founder status of the current ID.
+ map<string, string>::const_iterator mom_itr = mom_map.find((*fam_itr).second);
+ map<string, string>::const_iterator dad_itr = dad_map.find((*fam_itr).second);
+
+ //If both are not found, then we have a founder!
+ if((mom_itr == mom_map.end() || id_map.find((*mom_itr).second) == id_map.end()) &&
+ (dad_itr == dad_map.end() || id_map.find((*dad_itr).second) == id_map.end())){
+ curr_fam_ptr->addFounder((*samp_itr).second);
+ }else{
+ curr_fam_ptr->addNonFounder((*samp_itr).second);
+ }
+ }
+ ++fam_itr;
+ }
+
+ // If we had parental information, add it here
+ map<string, string>::const_iterator mom_itr = mom_map.begin();
+ while(mom_itr != mom_map.end()){
+ // Get the mother and child samples from the ID map
+ map<string, Sample*>::const_iterator mom_id_itr = id_map.find((*mom_itr).second);
+ map<string, Sample*>::const_iterator kid_id_itr = id_map.find((*mom_itr).first);
+
+ if(mom_id_itr != id_map.end() && kid_id_itr != id_map.end()){
+ (*mom_id_itr).second->addChild((*kid_id_itr).second);
+ (*kid_id_itr).second->addMother((*mom_id_itr).second);
+ }
+ ++mom_itr;
+ }
+
+ map<string, string>::const_iterator dad_itr = dad_map.begin();
+ while(dad_itr != dad_map.end()){
+ // Get the mother and child samples from the ID map
+ map<string, Sample*>::const_iterator dad_id_itr = id_map.find((*dad_itr).second);
+ map<string, Sample*>::const_iterator kid_id_itr = id_map.find((*dad_itr).first);
+
+ if(dad_id_itr != id_map.end() && kid_id_itr != id_map.end()){
+ (*dad_id_itr).second->addChild((*kid_id_itr).second);
+ (*kid_id_itr).second->addFather((*dad_id_itr).second);
+ }
+ ++dad_itr;
+ }
+}
+
+void DataLoader::readBinPed(const string& fn){
+
+ ifstream BIT(fn.c_str(), std::ios::in | std::ios::binary);
+
+ if(!BIT.good()){
+ Logger::log_err<std::invalid_argument>("Error opening genotype bitfile: " + fn, true);
+ }
+
+ char byte_val;
+ char magic[2];
+ //header
+ BIT.read(magic, 2);
+
+ bool snp_major = false;
+ if(magic[0] == 108 && magic[1] == 27){
+ BIT.read(&byte_val, 1);
+ snp_major = static_cast<bool>(byte_val);
+ } else {
+ //throw std::invalid_argument("Incorrect magic number in Binary PED file: " + fn);
+ // Maybe just warn here - assume v0.99 BED
+ Logger::log_err("WARNING: BED magic number not found, assuming v0.99 BED file");
+ BIT.seekg(0);
+ }
+
+ const unsigned char GENO_1 = 2;
+ const unsigned char GENO_2 = 1;
+
+ if(snp_major){
+ // OK, pad the sample size to a multiple of 4 (just "ignore" those samples)
+ while(_sample_incl.size() % 4 != 0){
+ _sample_incl.push_back(false);
+ }
+ DataSet::marker_iterator mi = ds_ptr->beginMarker();
+ for(unsigned int m = 0; m < _marker_incl.size(); m++){
+ if(!_marker_incl[m]){
+ // If I'm not including this marker, seek the appropriate number
+ // of bytes.
+ BIT.seekg(_sample_incl.size() / 4, BIT.cur);
+ } else {
+ DataSet::sample_iterator si = ds_ptr->beginSample();
+ // I KNOW that _sample_incl.size() is a multiple of 4!
+ for (unsigned int s = 0; s * 4 < _sample_incl.size(); s++) {
+ char ch;
+ BIT.read(&ch, 1);
+ if (!BIT.good()) {
+ Logger::log_err("Problem with the bed file - unexpected EOF.", true);
+ }
+
+ for (int i = 0; i < 4; i++) {
+ if (_sample_incl[s * 4 + i]) {
+ if (si == ds_ptr->endSample()) {
+ Logger::log_err("Problem with the bed file - not enough samples.", true);
+ }
+ if ((ch & GENO_2) && !(ch & GENO_1)) {
+ (*si)->setMissingGenotype(**mi);
+ } else {
+ (*si)->setGenotype(**mi, (ch & GENO_1) >> 1, ch
+ & GENO_2);
+ }
+
+ ++si;
+ }
+ // shift bits two places and go again!
+ ch >>= 2;
+ }
+ }
+ ++mi;
+ }
+ }
+ } else {
+ while(_marker_incl.size() % 4 != 0){
+ _marker_incl.push_back(false);
+ }
+ DataSet::sample_iterator si = ds_ptr->beginSample();
+ // OK, must be individual-major then!
+ for (unsigned int s = 0; s < _sample_incl.size(); s++) {
+ if(!_sample_incl[s]){
+ BIT.seekg(_marker_incl.size() / 4, BIT.cur);
+ } else {
+ if (si == ds_ptr->endSample()) {
+ Logger::log_err("Problem with the bed file - not enough samples.", true);
+ }
+
+ // I KNOW that _marker_incl.size() is a multiple of 4!
+ DataSet::marker_iterator mi = ds_ptr->beginMarker();
+ for (unsigned int m = 0; m * 4 < _marker_incl.size(); s++) {
+ char ch;
+ BIT.read(&ch, 1);
+ if (!BIT.good()) {
+ Logger::log_err("Problem with the bed file - unexpected EOF.", true);
+ }
+
+ for (int i = 0; i < 4; i++) {
+ if (_marker_incl[m * 4 + i]) {
+ if ((ch & GENO_2) && !(ch & GENO_1)) {
+ (*si)->setMissingGenotype(**mi);
+ } else {
+ (*si)->setGenotype(**mi,(ch & GENO_2) >> 1, ch & GENO_1);
+ }
+ }
+ // shift bits two places and go again!
+ ch >>= 2;
+ if(mi != ds_ptr->endMarker()){
+ ++mi;
+ }
+ }
+ }
+ ++si;
+ }
+ }
+
+ }
+
+ BIT.close();
+
+}
+
+void DataLoader::readTPed(const string& fn){
+ // We'll assume that we've already read the "tfam", which is really just a
+ // "ped" with no genotype information.
+ ifstream input(fn.c_str());
+
+ if(!input.is_open()){
+ Logger::log_err<std::invalid_argument>("Error opening TPEDfile: " + fn, true);
+ }
+
+ string line;
+
+ int lineno = -1;
+ while(getline(input, line)){
+ ++lineno;
+
+ stringstream s(line);
+ Marker* newMarker = parseMap(s);
+
+ if(newMarker != reinterpret_cast<Marker*>(-1)){
+ _marker_incl.push_back(newMarker != 0);
+
+ if(newMarker){
+ DataSet::sample_iterator si = ds_ptr->beginSample();
+ for(unsigned int i=0; i<_sample_incl.size(); i++){
+ // now, go through and parse each sample.
+ string g1, g2;
+ if(!s.good()){
+ throw std::logic_error("Error: not enough samples in TPed");
+ }
+ s >> g1;
+ s >> g2;
+
+
+ if(_sample_incl[i]){
+ if(si == ds_ptr->endSample()){
+ throw std::logic_error("Error: too many samples in TPed");
+ }
+
+ parseSample(newMarker, *si, g1, g2);
+ ++si;
+ }
+ }
+ }
+ }
+
+
+ }
+}
+
+void DataLoader::readLGen(const std::string& fn){
+ ifstream input(fn.c_str());
+
+ if(!input.is_open()){
+ Logger::log_err<std::invalid_argument>("Error opening LGEN file: " + fn, true);
+ }
+
+ string line;
+
+ int lineno = 0;
+ while(getline(input, line)){
+ ++lineno;
+
+ boost::algorithm::trim(line);
+ if(line[0] != '#'){
+ stringstream s(line);
+ string fid, iid, mid, g1, g2;
+
+ if(!_ped_no_fid){
+ s >> fid;
+ }
+ s >> iid >> mid >> g1 >> g2;
+ Sample* samp;
+ if(!_ped_no_fid){
+ samp = ds_ptr->getSample(fid, iid);
+ } else {
+ samp = ds_ptr->getSample(iid);
+ }
+ if(!samp){
+ Logger::log_err("ERROR: Sample not found on line " + boost::lexical_cast<string>(lineno), true);
+ }
+ Marker* mark = ds_ptr->getMarker(mid);
+ if(!mark){
+ Logger::log_err("ERROR: Marker not found on line " + boost::lexical_cast<string>(lineno), true);
+ }
+
+ parseSample(mark, samp, g1, g2, false);
+ }
+
+ }
+
+ input.close();
+}
+
+void DataLoader::readBeagle(){
+
+ string currChrom;
+ ICompressedFile genof;
+ ICompressedFile markerf;
+ _map_others = _map_ref = _map_alt = true;
+ _ped_missing_geno = bgl_missing_allele;
+ _map_no_distance = true;
+
+ ds_ptr->setBiallelic(!bgl_poly);
+ ds_ptr->setPhased(bgl_phased);
+
+ // read all the marker files first
+ for(unsigned int i=0; i<chroms.size(); i++){
+ currChrom = chroms[i];
+ markerf.open(marker_fns[i].c_str());
+
+ string markerline;
+ while(getline(markerf, markerline)){
+ boost::algorithm::trim(markerline);
+ if(markerline.size() > 0 && markerline[0] != '#'){
+ stringstream s(currChrom + " " + markerline);
+ Marker* m = parseMap(s);
+ if(m != reinterpret_cast<Marker*>(-1)){
+ _marker_incl.push_back(m);
+ }
+ }
+ }
+ markerf.close();
+
+ }
+
+ map<string, Sample*> incl_ids;
+ vector<Sample*> curr_samps;
+
+ // now read all the genotype information
+ Sample* samp = 0;
+ bool affect = false;
+ for(unsigned int i=0; i<chroms.size(); i++){
+ genof.open(beagle_fns[i].c_str());
+ curr_samps.clear();
+ string line;
+ int lineno = 0;
+ while(getline(genof, line)){
+ boost::algorithm::trim(line);
+ if(line.size() > 0 && line[0] != '#'){
+
+ ++lineno;
+ stringstream s(line);
+
+ // On the 1st line, we MUST have the ID line
+ if(lineno == 1){
+ if(line[0] != 'I' && line[0] != 'i'){
+ Logger::log_err("ERROR: PLATO requires the ID line in all BEAGLE files", true);
+ }
+
+ unsigned int fam_sz = 2 + bgl_trio;
+ string id1, id2; // these better match!!
+ s >> id1 >> id2; // 1st 2 are "I id", which we don't care about
+ while( (s >> id1 >> id2) ){
+ if(id1 != id2){
+ Logger::log_err("ERROR: consecutive IDs do not match in " + beagle_fns[i], true);
+ }
+
+ if(i == 0){
+ // Append either a Sample pointer or null pointer
+ // to the list of curent samples
+ curr_samps.push_back(filterSample(id1) ? ds_ptr->addSample(id1, _marker_incl.count()) : 0);
+ // Map the id to the sample pointer (make sure to
+ // account for the null pointer, which indicates
+ // we excluded this sample from analysis!)
+ incl_ids[id1] = curr_samps[curr_samps.size() - 1];
+
+ if(bgl_pair || bgl_trio){
+ if(curr_samps.size() % (fam_sz) == 0){
+ Family* f = ds_ptr->addFamily(boost::lexical_cast<string>(curr_samps.size() / fam_sz));
+ if(curr_samps[curr_samps.size() - fam_sz] && samp){
+ curr_samps[curr_samps.size() - fam_sz]->addChild(samp);
+ samp->addMother(curr_samps[curr_samps.size() - fam_sz]);
+ }
+ if(samp){
+ f->addNonFounder(samp);
+ }
+ if(curr_samps[curr_samps.size() - fam_sz]){
+ f->addFounder(curr_samps[curr_samps.size() - fam_sz]);
+ }
+
+ if(bgl_trio){
+ if(curr_samps[curr_samps.size() - 2]){
+ if(samp){
+ samp->addFather(curr_samps[curr_samps.size() - 2]);
+ curr_samps[curr_samps.size() - 2]->addChild(samp);
+ }
+ f->addFounder(curr_samps[curr_samps.size() - 2]);
+ }
+ }
+ }
+ } else if (samp) {
+ ds_ptr->addFamily(id1)->addFounder(samp);
+ }
+
+
+ } else{
+ map<string, Sample*>::const_iterator id_itr = incl_ids.find(id1);
+ if(id_itr == incl_ids.end()){
+ Logger::log_err("ERROR: ID '" + id1 + "' in file '"
+ + beagle_fns[i] + "' not found in first genotype file", true);
+ } else{
+ curr_samps.push_back((*id_itr).second);
+ }
+
+ }
+ }
+ }
+
+ // load up the affection status
+ if(i==0 && !affect && (line[0] == 'A' || line[0] == 'a')){
+ string a1, a2;
+ s >> a1 >> a2; // ignore the 1st 2 strings - we don't need them!
+ for(unsigned int j=0; j<curr_samps.size(); j++){
+ s >> a1 >> a2;
+ if(a1 != a2){
+ Logger::log_err("WARNING: discordant affection status, making unknown");
+ } else if(curr_samps[j]){
+ if(a1 == "1"){
+ curr_samps[j]->setAffected(false);
+ } else if(a1 == "2"){
+ curr_samps[j]->setAffected(true);
+ }
+ }
+ }
+
+ } else if(i==0 && (line[0] == 'T' || line[0] == 't' || line[0] == 'A' || line[0] == 'a')){
+ string miss_val = "";
+ if(line[0] == 'a' || line[0] == 'A'){
+ Logger::log_err("WARNING: multiple affection statuses seen, loading as a trait");
+ miss_val = "0";
+ }
+ string trait_id, t1, t2;
+ s >> trait_id;
+ s >> trait_id;
+
+ for(unsigned int j=0; j<curr_samps.size(); j++){
+ s >> t1 >> t2;
+ float tval = std::numeric_limits<float>::quiet_NaN();
+ if(t1 != t2){
+ Logger::log_err("WARNING: discordant trait values, making unknown");
+ } else if (!(stringstream(t1) >> tval)){
+ tval = std::numeric_limits<float>::quiet_NaN();
+ }
+ if(curr_samps[j]){
+ ds_ptr->addTrait(trait_id,curr_samps[j],tval);
+ }
+ }
+
+ } else if (line[0] == 'M' || line[0] == 'm'){
+ string mid, g1, g2;
+ s >> mid; // ignore the "M"
+ s >> mid;
+
+ Marker* curr_mark = ds_ptr->getMarker(mid);
+ if(curr_mark != 0){
+ for(unsigned int j=0; j<curr_samps.size(); j++){
+ s >> g1 >> g2;
+ if(curr_samps[j]){
+ parseSample(curr_mark, curr_samps[j], g1, g2, false, bgl_phased);
+ }
+ }
+
+ } else {
+ Logger::log_err("WARNING: unknown marker found on line " +
+ boost::lexical_cast<string>(lineno) + " of '" +
+ beagle_fns[i] + "', ignoring");
+ }
+ } else if (i == 0 && lineno != 1 && !(line[0] == 'a' || line[0] == 'A' || line[0] == 'T' || line[0] == 't')){
+ Logger::log_err("WARNING: unknown line identifier on line " +
+ boost::lexical_cast<string>(lineno) + " of '" + beagle_fns[i] +
+ "': PLATO only recognizes 'A', 'T', and 'M' lines");
+ }
+ }
+ }
+ genof.close();
+ }
+
+}
+
+void DataLoader::readVCF(){
+
+ Logger::log_err("INFO: The VCF loader in PLATO only uses some of the "
+ "information in a VCF file: details may be lost. "
+ "Please keep the original VCF file for completeness.");
+
+ ICompressedFile vcf_f(vcf_fn.c_str());
+
+ // have we already warned about flags and VCF inconsistencies?
+ bool poly_warn = vcf_poly;
+ bool phase_warn = false;
+
+ string geno_sep = vcf_phased ? "|" : "/";
+ string alt_geno_sep = vcf_phased ? "/" : "|";
+
+ ds_ptr->setBiallelic(!vcf_poly);
+ ds_ptr->setPhased(vcf_phased);
+
+ string curr_line;
+ deque<Sample*> samp_list;
+ vector<bool> incl_sample;
+
+ unsigned int lineno = 0;
+ unsigned int n_fields;
+ while(getline(vcf_f, curr_line)){
+ ++lineno;
+ vector<string> fields;
+ if(curr_line.size() > 2 && curr_line[0] == '#' && curr_line[1] != '#'){
+ // In this case, we are looking at the "#CHROM" line (we hope!)
+ split(fields, curr_line, boost::is_any_of("\t"));
+ n_fields = fields.size();
+
+ // Sanity check here! Note that I never use the "QUAL" or "INFO"
+ // fields, so I'm not going to check for them!
+ if(n_fields < 9 || fields[0] != "#CHROM" || fields[1] != "POS" ||
+ fields[2] != "ID" || fields[3] != "REF" || fields[4] != "ALT" ||
+ fields[6] != "FILTER" || fields[8] != "FORMAT"){
+ Logger::log_err("ERROR: VCF header line is malformed, please check your VCF input.", true);
+ }
+
+ // by default, include all samples
+ incl_sample.resize(n_fields - 9, true);
+
+ for(unsigned int i=9; i<n_fields; i++){
+ if(filterSample(fields[i])){
+ samp_list.push_back(ds_ptr->addSample(fields[i], 0));
+ }else{
+ incl_sample[i] = false;
+ }
+ }
+
+ } else if(curr_line.size() > 2 && curr_line[0] != '#'){
+ // In this case, we're looking at a marker
+
+ split(fields, curr_line, boost::is_any_of("\t"));
+ if(fields.size() != n_fields){
+ Logger::log_err("ERROR: Mismatched number of fields on line "
+ + boost::lexical_cast<string>(lineno), true);
+ }
+
+ string chr, id, ref, alt, filter, format;
+ unsigned int bploc = 0;
+ int g1, g2;
+ chr = fields[0];
+ bploc = boost::lexical_cast<unsigned int>(fields[1]);
+ id = fields[2];
+ ref = fields[3];
+ alt = fields[4];
+ filter = fields[6];
+ format = fields[8];
+
+ // check for inclusion based on the marker-level data
+ bool use = filterMarker(chr, bploc, id);
+ use &= (no_filter_marker || filter == "." || filter == "PASS");
+
+ if(use){
+ Marker* m = ds_ptr->addMarker(chr,bploc,id);
+ m->addAllele(ref);
+ vector<string> alt_list;
+ split(alt_list, alt, boost::is_any_of(","));
+ if(!poly_warn && alt_list.size() > 1){
+ Logger::log_err("WARNING: VCF appears polyallelic, but "
+ "--vcf-poly was not given. Alternate alleles will "
+ "be collapsed to the first alternate.");
+ poly_warn = true;
+ }
+ for(unsigned int i=0; i<alt_list.size(); i++){
+ m->addAllele(alt_list[i]);
+ }
+
+ // parse the format string
+ unsigned int gt_idx;
+ unsigned int ft_idx;
+
+ vector<string> format_list;
+ split(format_list, format, boost::is_any_of(":"));
+ gt_idx = (find(format_list.begin(), format_list.end(), "GT") - format_list.begin());
+ ft_idx = (find(format_list.begin(), format_list.end(), "FT") - format_list.begin());
+ ft_idx = (ft_idx == format_list.size()) ? static_cast<unsigned int>(-1) : ft_idx;
+
+ if(gt_idx == format_list.size()){
+ Logger::log_err("ERROR: No 'GT' format on line " +
+ boost::lexical_cast<string>(lineno) +
+ ", cannot continue.", true);
+ }
+
+ deque<Sample*>::const_iterator si = samp_list.begin();
+ for(unsigned int i=0; i<n_fields-9; i++){
+ if(incl_sample[i]){
+ // parse the individual call
+ vector<string> geno_list;
+ split(geno_list, fields[i+9], boost::is_any_of(":"));
+
+ if(no_filter_geno || ft_idx == static_cast<unsigned int>(-1) ||
+ geno_list[ft_idx] == "PASS"){
+ vector<string> call_list;
+ split(call_list, geno_list[gt_idx], boost::is_any_of(geno_sep));
+ if(call_list.size() == 1){
+ split(call_list, geno_list[gt_idx], boost::is_any_of(alt_geno_sep));
+ if(!phase_warn && call_list.size() != 1){
+ Logger::log_err("WARNING: VCF phasing is "
+ "inconsistent with arguments passed "
+ "to the loader, genotype data may "
+ "have unexpected results.");
+ }
+ }
+
+
+ if(call_list.size() != 2){
+ Logger::log_err("WARNING: Non-diploid found on line " +
+ boost::lexical_cast<string>(lineno) + ", setting to missing");
+ (*si)->appendMissingGenotype();
+ } else {
+ // If we can't convert to an integer, set to -1 (missing genotype)
+ (*si)->appendGenotype(
+ static_cast<unsigned char>((stringstream(call_list[0]) >> g1) ? g1 : -1),
+ static_cast<unsigned char>((stringstream(call_list[1]) >> g2) ? g2 : -1));
+ }
+ } else {
+ (*si)->appendMissingGenotype();
+ }
+ ++si;
+ }
+
+ } // end iterating over genotypes
+
+ } // end if(use)
+
+ } // end if (header) else if (regular line)
+ } // end while(getline)
+
+ vcf_f.close();
+
+
+}
+
+Marker* DataLoader::parseMap(stringstream& ss) const {
+ string chr;
+ ss >> chr;
+
+ // skip empty lines or those that begin with "#"
+ if (chr.size() == 0 || chr[0] == '#') {
+ return reinterpret_cast<Marker*>(-1);
+ }
+ string id;
+ int bploc;
+ int distance;
+ string ref;
+ string alt;
+
+ ss >> id;
+ if (!_map_no_distance) {
+ ss >> distance;
+ }
+ ss >> bploc;
+ if (_map_ref) {
+ ss >> ref;
+ }
+ if (_map_alt) {
+ ss >> alt;
+ }
+
+ // check for conditions of use here!
+ bool use = filterMarker(chr, bploc, id);
+
+ Marker* m = 0;
+ if (use) {
+ m = ds_ptr->addMarker(chr, static_cast<unsigned int> (bploc),
+ id);
+
+ if (_map_ref) {
+ m->addAllele(ref);
+ //m->setRefAllele(ref);
+ }
+ if (_map_alt) {
+ m->addAllele(alt);
+ //m->setAltAllele(alt);
+ }
+ if(_map_others) {
+ while(ss >> alt){
+ m->addAllele(alt);
+ }
+ }
+ }
+ return m;
+}
+
+void DataLoader::parseSample(Marker* m, Sample* s, const string& g1, const string& g2, bool append, bool phased) const{
+
+ if ((g1 == _ped_missing_geno) + (g2 == _ped_missing_geno) >= (1 + phased)) {
+ if(append){
+ s->appendMissingGenotype();
+ } else {
+ s->setMissingGenotype(*m);
+ }
+ } else {
+ unsigned char g_idx1 = (g1 == _ped_missing_geno) ? Sample::missing_allele :
+ static_cast<unsigned char> (m->addAllele(g1));
+ unsigned char g_idx2 = (g2 == _ped_missing_geno) ? Sample::missing_allele :
+ static_cast<unsigned char> (m->addAllele(g2));
+
+ if(append){
+ s->appendGenotype(g_idx1, g_idx2);
+ } else {
+ s->setGenotype(*m, g_idx1, g_idx2);
+ }
+ }
+
+}
+
+bool DataLoader::filterMarker(const string& chrom, int bploc, const string& id) const{
+ // do not use if bploc <= 0
+ bool toret = bploc > 0;
+
+ // do not use if chromosome is not in the given chrom list
+ toret = toret && (chrom_ids.empty() || chrom_ids.count(InputManager::chrStringToInt(chrom)));
+
+ // do not use if not found in the given include list
+ toret = toret && (incl_marker_set.empty() || incl_marker_set.count(id));
+
+ // do not use if found in the given exclude list
+ toret = toret && (excl_marker_set.empty() || !excl_marker_set.count(id));
+
+ // do not use if it falls outside the given base pair range
+ if(toret && !bp_window_set.empty()){
+ // at this point, assume false - prove me wrong!
+ toret = false;
+
+ // get the element strictly larger than the current base pair
+ set<pair<unsigned int, unsigned int> >::const_iterator bp_itr =
+ bp_window_set.upper_bound(pair<unsigned int, unsigned int>(bploc, bploc));
+
+ // subtract one (now, the 1st element of the pair is <= bploc)
+ // and make sure that the second element is >= bploc
+ if(bp_itr != bp_window_set.begin()){
+ --bp_itr;
+ if(static_cast<unsigned int>(bploc) <= (*bp_itr).second){
+ toret = true;
+ }
+ }
+ }
+
+ return toret;
+}
+
+bool DataLoader::filterSample(const string& id, const string& fid) const{
+
+ // Make sure we are in the include list
+ bool toret = (incl_sample_set.empty() || incl_sample_set.count(id + sampl_field_sep + fid));
+
+ // Make sure we aren't in the exclude list!
+ toret = toret && (excl_sample_set.empty() || !excl_sample_set.count(id + sampl_field_sep + fid));
+
+ return toret;
+}
+
+void DataLoader::readSampleList(const vector<string>& in_list, set<string>& out_set) const{
+ vector<string> all_samps;
+ InputManager::parseInput(in_list, all_samps);
+
+ for(unsigned int i=0; i<all_samps.size(); i++){
+ stringstream ss(all_samps[i]);
+ string id, fid;
+ if(ss >> id){
+ fid = id;
+ if(ss >> fid){
+ Logger::log_err("WARNING: Sample '" + all_samps[i] +
+ "' has more than an 'FID IID', "
+ "ignoring everything after 2nd space!");
+ }
+ }
+ out_set.insert(id + sampl_field_sep + fid);
+ }
+}
+
+void DataLoader::readMarkerFile(const vector<string>& fn_list, set<string>& out_set) const{
+ string marker_id;
+ for(unsigned int i=0; i<fn_list.size(); i++){
+ ifstream f(fn_list[i].c_str());
+ while(f >> marker_id){
+ out_set.insert(marker_id);
+ }
+ }
+}
+
+}
+}
diff --git a/method_lib/util/DataLoader.h b/method_lib/util/DataLoader.h
new file mode 100644
index 0000000..b190878
--- /dev/null
+++ b/method_lib/util/DataLoader.h
@@ -0,0 +1,184 @@
+/*
+ * DataLoader.h
+ *
+ * Created on: Nov 11, 2013
+ * Author: jrw32
+ */
+
+#ifndef UTILITY_DATA_LOADER_H
+#define UTILITY_DATA_LOADER_H
+
+#include <string>
+
+#include <bitset>
+
+#include <boost/dynamic_bitset.hpp>
+#include <boost/program_options.hpp>
+
+namespace PLATO {
+
+namespace Data{
+
+class DataSet;
+class Marker;
+class Sample;
+}
+
+namespace Utility{
+class DataLoader {
+
+public:
+ enum input_style{
+ UNKNOWN,
+ PED,
+ BED,
+ TPED,
+ LGEN,
+ BEAGLE,
+ VCF
+ };
+
+ DataLoader();
+ virtual ~DataLoader() {}
+
+ boost::program_options::options_description& addOptions(boost::program_options::options_description& opts);
+ void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ //void setDataSet(PLATO::Data::DataSet& ds){ds_ptr = &ds;}
+ void read(Data::DataSet& ds);
+
+private:
+ void readPed(const std::string& fn);
+ void readMap(const std::string& fn);
+ void readBinPed(const std::string& fn);
+ void readTPed(const std::string& fn);
+ void readLGen(const std::string& fn);
+
+ void readBeagle();
+
+ void readVCF();
+
+ PLATO::Data::Marker* parseMap(std::stringstream& ss) const;
+ void parseSample(PLATO::Data::Marker* m, PLATO::Data::Sample* samp,
+ const std::string& s1, const std::string& s2,
+ bool append = true, bool phased=false) const;
+
+ /*!
+ * \brief Determines wheter to use the given marker
+ * Enables a pre-filter for loading the given marker based solely on the
+ * chromosome, base pair and ID. Returns true if the given marker passes
+ * all pre-filter steps.
+ */
+ bool filterMarker(const std::string& chrom, int bploc, const std::string& id) const;
+
+ /*!
+ * \brief Determines wheter to use the given marker
+ * Enables a pre-filter for loading the given marker based solely on the
+ * chromosome, base pair and ID. Returns true if the given marker passes
+ * all pre-filter steps.
+ */
+ bool filterSample(const std::string& id, const std::string& fid="") const;
+
+ void readSampleList(const std::vector<std::string>& in_list, std::set<std::string>& out_set) const;
+ void readMarkerFile(const std::vector<std::string>& fn_list, std::set<std::string>& out_set) const;
+
+ // does the map file contain a distance column?
+ bool _map_no_distance;
+ // does the map file contain a referent allele column?
+ bool _map_ref;
+ // does the map file contain an alternate allele column?
+ bool _map_alt;
+ // does the map file contain even more alleles?
+ bool _map_others;
+
+ // does the ped file contain genotype information (false when reading fam)?
+ bool _ped_genotype;
+ // does the ped file have fids?
+ bool _ped_no_fid;
+ // does the ped file have parental ids?
+ bool _ped_no_parents;
+ // does the ped file have gender?
+ bool _ped_no_gender;
+ // does the ped file have phenotype?
+ bool _ped_no_pheno;
+ // is the control value in the phenotype "1" (-> case is "2")
+ // or is the control "0" (-> case is "1")
+ bool _ped_control0;
+ // is the phenotype value quantitative (float)?
+ bool _quant;
+
+ // bitset dictating the inclusion/exclusion of markers in the dataset
+ boost::dynamic_bitset<> _marker_incl;
+
+ // bitset indicating inclusion/exclusion of samples in the dataset
+ boost::dynamic_bitset<> _sample_incl;
+
+ std::string _ped_missing_geno;
+
+ // the actual DataSet we're working with
+ PLATO::Data::DataSet* ds_ptr;
+
+ enum input_style input;
+
+ //options
+ std::string file_base;
+ std::string ped_fn;
+ std::string map_fn;
+ std::string bfile_base;
+ std::string bim_fn;
+ std::string bed_fn;
+ std::string fam_fn;
+ std::string tfile_base;
+ std::string tped_fn;
+ std::string tfam_fn;
+ std::string lfile_base;
+ std::string lgen_fn;
+
+ // BEAGLE options
+ std::string beagle_prefix;
+ std::string beagle_suffix;
+ std::string marker_suffix;
+
+ std::string bgl_missing_allele;
+
+ std::vector<std::string> beagle_fns;
+ std::vector<std::string> marker_fns;
+ std::vector<std::string> chroms;
+
+ std::bitset<3> _fns_provided;
+
+ bool bgl_trio;
+ bool bgl_pair;
+ bool bgl_phased;
+ bool bgl_poly;
+
+ std::string vcf_fn;
+ bool no_filter_marker;
+ bool no_filter_geno;
+ bool vcf_phased;
+ bool vcf_poly;
+
+ std::vector<std::string> chrom_list;
+ std::vector<std::string> bp_window;
+ std::vector<std::string> incl_marker_str;
+ std::vector<std::string> excl_marker_str;
+ std::vector<std::string> incl_marker_fns;
+ std::vector<std::string> excl_marker_fns;
+ std::vector<std::string> incl_sample_str;
+ std::vector<std::string> excl_sample_str;
+
+ std::set<unsigned short> chrom_ids;
+ std::set<std::pair<unsigned int, unsigned int> > bp_window_set;
+ std::set<std::string> incl_sample_set;
+ std::set<std::string> excl_sample_set;
+ std::set<std::string> incl_marker_set;
+ std::set<std::string> excl_marker_set;
+
+ static const std::string sampl_field_sep;
+};
+
+}
+}
+
+#endif /* DATALOADER_H_ */
diff --git a/method_lib/util/GSLUtils.cpp b/method_lib/util/GSLUtils.cpp
new file mode 100644
index 0000000..eba8acb
--- /dev/null
+++ b/method_lib/util/GSLUtils.cpp
@@ -0,0 +1,105 @@
+#include "GSLUtils.h"
+
+#include <vector>
+#include <set>
+#include <limits>
+#include <cmath>
+
+#include <gsl/gsl_linalg.h>
+#include <gsl/gsl_blas.h>
+
+using std::vector;
+using std::fabs;
+using std::set;
+
+namespace PLATO{
+namespace Utility{
+
+unsigned int GSLUtils::checkColinear(const gsl_matrix* X, gsl_matrix* P){
+ unsigned int n_rows = X->size1;
+ unsigned int n_cols = X->size2;
+
+ gsl_matrix* A = gsl_matrix_alloc(n_rows, n_cols);
+ gsl_matrix* V = gsl_matrix_alloc(n_cols, n_cols);
+ gsl_vector* S = gsl_vector_calloc(n_cols);
+ gsl_vector* __ws_v = gsl_vector_alloc(n_cols);
+ gsl_matrix* __ws_m = gsl_matrix_alloc(n_cols, n_cols);
+
+ gsl_matrix_memcpy(A, X);
+
+ gsl_linalg_SV_decomp_mod (A, __ws_m, V, S, __ws_v);
+
+ // OK, now we look for all singular values less than machine epsilon
+ // (we'll use float epsilon for double precision - lots of willge room there)
+ unsigned int n_indep = n_cols;
+ set<unsigned int> idx_set;
+ while(gsl_vector_get(S,n_indep - 1) < std::numeric_limits<float>::epsilon()){
+ // If we're here, the "n_indep - 1" column of V is a linear combination
+ // of columns that adds to 0, so we want the last non-zero coefficient
+
+ unsigned int p_idx = n_cols;
+
+ // At the end of this (empty) loop, p_idx will be the index of the column
+ // to drop
+ while(--p_idx > 0){
+ double val = fabs(gsl_matrix_get(V,p_idx,n_indep-1));
+ if(val > std::numeric_limits<float>::epsilon() && idx_set.count(p_idx) == 0){
+ break;
+ }
+ }
+
+ idx_set.insert(p_idx);
+ --n_indep;
+ }
+
+ vector<unsigned int> idx_permu(idx_set.begin(), idx_set.end());
+
+ gsl_matrix* _P_ret = gsl_matrix_alloc(n_cols,n_cols);
+
+ // P is our permutation matrix
+ gsl_matrix_set_identity(_P_ret);
+
+ if(n_indep != n_cols){
+
+ // OK, let's construct a permutation matrix by walking from the front of
+ // the idx_permu vector and creating a temporary permutation matrix
+ // and left-multiplying by P (which is now the identity)
+ gsl_matrix* P_tmp = gsl_matrix_alloc(n_cols, n_cols);
+ gsl_matrix* _P_work = gsl_matrix_calloc(n_cols, n_cols);
+
+ for(unsigned int i=0; i<idx_permu.size(); i++){
+ unsigned int p_idx = idx_permu[i];
+ gsl_matrix_set_identity(P_tmp);
+
+ // Now, we want to transpose the (p_idx) and (n_cols - i - 1) columns
+ // so we set (p_idx, p_idx) = (n_cols-i-1,n_cols-i-1) = 0
+ // and (p_idx,n_cols-i-1) = (n_cols-i-1,p_idx) = 1
+ gsl_matrix_set(P_tmp, p_idx,p_idx, 0);
+ gsl_matrix_set(P_tmp, n_cols-i-1,n_cols-i-1, 0);
+ gsl_matrix_set(P_tmp, n_cols-i-1,p_idx, 1);
+ gsl_matrix_set(P_tmp, p_idx,n_cols-i-1, 1);
+
+ // Now, set P = P * P_tmp
+ gsl_blas_dgemm(CblasNoTrans, CblasNoTrans, 1.0, _P_ret, P_tmp, 0.0, _P_work);
+ std::swap(_P_ret, _P_work);
+ }
+ gsl_matrix_free(P_tmp);
+ gsl_matrix_free(_P_work);
+ }
+
+ // copy _P_ret into our return variable
+ gsl_matrix_memcpy(P, _P_ret);
+ gsl_matrix_free(_P_ret);
+
+ gsl_matrix_free(A);
+ gsl_matrix_free(V);
+ gsl_vector_free(S);
+ gsl_vector_free(__ws_v);
+ gsl_matrix_free(__ws_m);
+
+ return n_cols - n_indep;
+}
+
+
+}
+}
diff --git a/method_lib/util/GSLUtils.h b/method_lib/util/GSLUtils.h
new file mode 100644
index 0000000..e2b7c18
--- /dev/null
+++ b/method_lib/util/GSLUtils.h
@@ -0,0 +1,43 @@
+#ifndef UTILITY_GSL_UTILS_H
+#define UTILITY_GSL_UTILS_H
+
+#include<gsl/gsl_matrix.h>
+
+/*!
+ * \brief A class of Utility functions for the GNU scientific Library (GSL)
+ */
+
+namespace PLATO{
+namespace Utility{
+
+class GSLUtils{
+
+public:
+
+ /*
+ * \brief A function to check the colinearity of the columns of a given matrix
+ * This function will check if the columns in the given matrix are colinear
+ * or not. Also, as a secondary parameter, it will return a permutation
+ * matrix that will move all linearly dependent columns to the end of the
+ * matrix.
+ *
+ * Note that X must have at least as many rows as columns, and P should
+ * be a square matrix with same number of columns as X
+ *
+ * In order to get the indices of the colinear columns, you can take the vector
+ * v = [0 1 2 3 ...] and calculate a = Pv. Then the last k entries of a are
+ * the indices of the colinear columns (here k is the return value of this
+ * function)
+ *
+ * \param X the matrix to check
+ * \param P the permutation matrix to be returned
+ * \return the number of colinear columns
+ */
+ static unsigned int checkColinear(const gsl_matrix*, gsl_matrix* P);
+};
+
+}
+}
+
+
+#endif
diff --git a/method_lib/util/ICompressedFile.cpp b/method_lib/util/ICompressedFile.cpp
new file mode 100644
index 0000000..3324586
--- /dev/null
+++ b/method_lib/util/ICompressedFile.cpp
@@ -0,0 +1,61 @@
+/*
+ * ICompressdFile.cpp
+ *
+ * Created on: Apr 30, 2014
+ * Author: jrw32
+ */
+
+#include "ICompressedFile.h"
+
+#include <string>
+
+#include <boost/algorithm/string.hpp>
+#include <boost/iostreams/filter/gzip.hpp>
+#include <boost/iostreams/filter/bzip2.hpp>
+
+namespace PLATO {
+namespace Utility {
+
+ICompressedFile::ICompressedFile() : std::istream(0) {}
+
+ICompressedFile::ICompressedFile(const char* fn, std::ios_base::openmode mode)
+ : std::istream(0) {
+ this->open(fn, mode);
+}
+
+void ICompressedFile::open(const char* fn, std::ios_base::openmode mode){
+ int extPos = std::string(fn).find_last_of('.');
+ std::string ext = std::string(fn).substr(extPos+1);
+
+ bool isgz = (boost::iequals(ext, "gz") || boost::iequals(ext, "z"));
+ bool isbz = boost::iequals(ext, "bz");
+
+ _base_f.open(fn, mode | ((isgz || isbz) ? std::ios_base::binary : std::ios_base::in));
+
+ if(_base_f.rdstate() != std::ios_base::failbit && (isgz || isbz)){
+
+ if(isgz){
+ _infile.push(boost::iostreams::gzip_decompressor());
+ } else if(isbz){
+ _infile.push(boost::iostreams::bzip2_decompressor());
+ }
+
+ _infile.push(_base_f);
+
+ this->rdbuf(_infile.rdbuf());
+ } else {
+ this->rdbuf(_base_f.rdbuf());
+ this->setstate(_base_f.rdstate());
+ }
+
+}
+
+
+void ICompressedFile::close(){
+ _infile.reset();
+}
+
+
+}
+
+}
diff --git a/method_lib/util/ICompressedFile.h b/method_lib/util/ICompressedFile.h
new file mode 100644
index 0000000..24352df
--- /dev/null
+++ b/method_lib/util/ICompressedFile.h
@@ -0,0 +1,45 @@
+/*
+ * ICompressdFile.h
+ *
+ * Created on: Apr 30, 2014
+ * Author: jrw32
+ */
+
+#ifndef UTILITY_ICOMPRESSEDFILE_H
+#define UTILITY_ICOMPRESSEDFILE_H
+
+#include <istream>
+#include <fstream>
+#include <boost/iostreams/filtering_stream.hpp>
+
+namespace PLATO {
+namespace Utility {
+
+/*!
+ * \brief A class to read in compressed files automatically based on extension
+ * This class, which has the same interface as an ifstream (so can be used
+ * interchangeably) will automatically decompress
+ */
+class ICompressedFile : public std::istream {
+public:
+ ICompressedFile();
+ explicit ICompressedFile(const char* fn, std::ios_base::openmode mode = std::ios_base::in);
+ virtual ~ICompressedFile() {}
+
+ void open(const char* fn, std::ios_base::openmode mode = std::ios_base::in);
+ void close();
+
+private:
+ void openCompressed(const char* fn);
+
+ boost::iostreams::filtering_stream<boost::iostreams::input> _infile;
+ std::ifstream _base_f;
+
+
+};
+
+}
+
+}
+
+#endif /* ICOMPRESSDFILE_H_ */
diff --git a/method_lib/util/InputManager.cpp b/method_lib/util/InputManager.cpp
new file mode 100644
index 0000000..23f7582
--- /dev/null
+++ b/method_lib/util/InputManager.cpp
@@ -0,0 +1,76 @@
+#include "InputManager.h"
+
+#include <boost/lexical_cast.hpp>
+#include <boost/tokenizer.hpp>
+
+namespace po=boost::program_options;
+
+using std::string;
+using std::map;
+
+namespace PLATO{
+namespace Utility{
+
+InputManager::IChromMap InputManager::s_chr_map;
+map<unsigned short, string> InputManager::s_chrint_map;
+const string InputManager::s_missing_chr_str("");
+
+po::options_description& InputManager::addOptions(po::options_description& opts){
+ po::options_description global("Chromosome Mapping Options");
+ global.add_options()
+ ("chroms", po::value<unsigned short>()->default_value(22),
+ "Number of autosomal chromosomes")
+ ("extra-chroms", po::value<string>()->default_value("X,Y,XY,M-MT"),
+ "Comma-separated list of extra chromosomes to include. For each chromosome, a dash separates aliases.");
+
+ opts.add(global);
+
+ return opts;
+}
+
+void InputManager::parseGlobalOptions(const po::variables_map& vm){
+
+ unsigned short curr_chr = 0;
+ unsigned short max_chrom = vm["chroms"].as<unsigned short>();
+
+ s_chr_map.clear();
+ // Add chromosome numbers to the map
+ while(curr_chr < max_chrom){
+ ++curr_chr;
+ string chr_str = boost::lexical_cast<string>(curr_chr);
+
+ s_chr_map[chr_str] = curr_chr;
+ // let's also add "chr" to our map
+ s_chr_map[string("chr") + chr_str] = curr_chr;
+
+ // let's add the int -> chromosome map, too!
+ s_chrint_map[curr_chr] = chr_str;
+ }
+
+ // Add the extra chromosomes
+ boost::char_separator<char> chr_sep(",");
+ boost::char_separator<char> alias_sep("-");
+ boost::tokenizer < boost::char_separator<char> > tok(vm["extra-chroms"].as<string>(), chr_sep);
+ for (boost::tokenizer<boost::char_separator<char> >::iterator beg =
+ tok.begin(); beg != tok.end(); ++beg) {
+
+ ++curr_chr;
+
+ boost::tokenizer < boost::char_separator<char> > alias_tok(*beg, alias_sep);
+ s_chrint_map[curr_chr] = *(alias_tok.begin());
+
+ // let's allow this to be referenced by the chromosome number (i.e., "23" is the same as "X")
+ s_chr_map[boost::lexical_cast<string>(curr_chr)] = curr_chr;
+ // let's also add "chrN" to our map
+ s_chr_map[string("chr") + boost::lexical_cast<string>(curr_chr)] = curr_chr;
+
+ for (boost::tokenizer<boost::char_separator<char> >::iterator a_beg =
+ alias_tok.begin(); a_beg != alias_tok.end(); ++a_beg) {
+ s_chr_map[*a_beg] = curr_chr;
+ }
+
+ }
+}
+
+}
+}
diff --git a/method_lib/util/InputManager.h b/method_lib/util/InputManager.h
new file mode 100644
index 0000000..c2cdb56
--- /dev/null
+++ b/method_lib/util/InputManager.h
@@ -0,0 +1,91 @@
+#ifndef UTILITY_INPUT_MANAGER_H
+#define UTILITY_INPUT_MANAGER_H
+
+#include <string>
+#include <sstream>
+#include <map>
+
+#include <boost/program_options.hpp>
+#include <boost/algorithm/string.hpp>
+#include <boost/tokenizer.hpp>
+#include <boost/lexical_cast.hpp>
+
+namespace PLATO{
+namespace Utility{
+
+
+/*!
+ * Class that manages the input to PLATO
+ */
+class InputManager{
+
+private:
+ template<typename T>
+ struct ci_less:std::binary_function<T,T,bool>
+ { bool operator() (const T& s1,const T& s2) const { return boost::ilexicographical_compare(s1,s2); }};
+
+ typedef std::map<std::string, unsigned short, ci_less<std::string> > IChromMap;
+
+public:
+
+ /*!
+ * Converts a string into a chromosome number (i.e. X -> 23, Y -> 24, etc)
+ */
+ static unsigned short chrStringToInt(const std::string& chr_str){
+ IChromMap::const_iterator itr = s_chr_map.find(chr_str);
+ return itr == s_chr_map.end() ? 0 : (*itr).second;
+ }
+
+ static const std::string& chrIntToString(unsigned int chr_int){
+ std::map<unsigned short, std::string>::const_iterator itr = s_chrint_map.find(static_cast<unsigned short>(chr_int));
+ return itr == s_chrint_map.end() ? s_missing_chr_str : (*itr).second;
+ }
+
+ /*!
+ * Adds some options relevant to parsing input
+ */
+ static boost::program_options::options_description& addOptions(boost::program_options::options_description& opts);
+
+ /*!
+ * Parse options related to the chromosome structure you're working with
+ */
+ static void parseGlobalOptions(const boost::program_options::variables_map& vm);
+
+ /*!
+ * Parse a vector of separated strings
+ */
+ template <class I, class O>
+ static void parseInput(const I& cont_in, O& cont_out, const std::string& sep=",");
+
+private:
+
+ //! A mapping of strings -> chromosome numbers
+ static IChromMap s_chr_map;
+ static std::map<unsigned short, std::string> s_chrint_map;
+ static const std::string s_missing_chr_str;
+
+};
+
+template <class I, class O>
+void InputManager::parseInput(const I& cont_in, O& cont_out, const std::string& sep){
+ typename I::const_iterator itr = cont_in.begin();
+ while(itr != cont_in.end()){
+
+ boost::char_separator<char> tok_sep(sep.c_str());
+
+ boost::tokenizer<boost::char_separator<char> > tok(boost::lexical_cast<std::string>(*itr), tok_sep);
+ boost::tokenizer<boost::char_separator<char> >::iterator t_itr = tok.begin();
+ while(t_itr != tok.end()){
+ cont_out.insert(cont_out.end(), boost::lexical_cast<typename O::value_type>(*t_itr));
+ ++t_itr;
+ }
+
+ ++itr;
+ }
+}
+
+}
+}
+
+
+#endif
diff --git a/method_lib/util/Logger.cpp b/method_lib/util/Logger.cpp
new file mode 100644
index 0000000..c5e9c56
--- /dev/null
+++ b/method_lib/util/Logger.cpp
@@ -0,0 +1,51 @@
+#include "Logger.h"
+
+using std::string;
+using std::ofstream;
+using std::ostream;
+using std::endl;
+
+namespace PLATO{
+namespace Utility{
+
+string Logger::logfn = "plato.log";
+Logger* Logger::_log = 0;
+
+Logger::Logger() : logstream(logfn.c_str()){}
+
+Logger::~Logger(){
+ logstream.close();
+}
+
+void Logger::setLogFile(const string& fn){
+ if(_log){
+ _log->resetFile(fn);
+ } else {
+ logfn = fn;
+ }
+}
+
+void Logger::resetFile(const string& fn){
+ _log_mutex.lock();
+ if(fn != logfn){
+ logfn = fn;
+ logstream.close();
+ logstream.open(logfn.c_str());
+ }
+ _log_mutex.unlock();
+}
+
+void Logger::print(const string& msg, ostream& out){
+ _log_mutex.lock();
+ logstream << msg << endl;
+ out << msg << endl;
+ _log_mutex.unlock();
+
+}
+
+Logger& Logger::getLogger(){return *((_log == 0) ? _log = new Logger() : _log);}
+
+void Logger::log(const std::string& msg){getLogger().print(msg, std::cout);}
+
+}
+}
diff --git a/method_lib/util/Logger.h b/method_lib/util/Logger.h
new file mode 100644
index 0000000..475aa63
--- /dev/null
+++ b/method_lib/util/Logger.h
@@ -0,0 +1,53 @@
+#ifndef UTIL_LOGGER_H
+#define UTIL_LOGGER_H
+
+#include <string>
+#include <iostream>
+#include <fstream>
+#include <stdexcept>
+
+#include <boost/thread.hpp>
+
+namespace PLATO{
+namespace Utility{
+
+class Logger{
+private:
+ Logger();
+ ~Logger();
+ Logger(const Logger&);
+ Logger& operator=(const Logger&);
+
+public:
+ static Logger& getLogger();
+ static void setLogFile(const std::string& fn);
+
+ static void log(const std::string& msg);
+ template <class E>
+ static void log_err(const std::string& msg, bool fatal = false);
+ static void log_err(const std::string& msg, bool fatal = false){log_err<std::logic_error>(msg, fatal);}
+
+private:
+ void print(const std::string& msg, std::ostream& out);
+ void resetFile(const std::string& fn);
+
+ static std::string logfn;
+ static Logger* _log;
+
+ // We need to make the log thread-safe
+ boost::mutex _log_mutex;
+ std::ofstream logstream;
+};
+
+template <class E>
+void Logger::log_err(const std::string& msg, bool fatal){
+ getLogger().print(msg, std::cerr);
+ if(fatal){
+ throw E(msg);
+ }
+}
+
+}
+}
+
+#endif
diff --git a/method_lib/util/MPIUtils.cpp b/method_lib/util/MPIUtils.cpp
new file mode 100644
index 0000000..cc374ee
--- /dev/null
+++ b/method_lib/util/MPIUtils.cpp
@@ -0,0 +1,16 @@
+/*
+ * MPIUtils.cpp
+ *
+ * Created on: Aug 18, 2014
+ * Author: jrw32
+ */
+
+#include "MPIUtils.h"
+
+namespace PLATO{
+namespace Utility{
+
+bool MPIUtils::threadsafe_mpi = false;
+
+}
+}
diff --git a/method_lib/util/MPIUtils.h b/method_lib/util/MPIUtils.h
new file mode 100644
index 0000000..3daaf49
--- /dev/null
+++ b/method_lib/util/MPIUtils.h
@@ -0,0 +1,53 @@
+#ifndef UTIL_MPIUTILS_H
+#define UTIL_MPIUTILS_H
+
+#include <sstream>
+#include <utility>
+#include <boost/archive/binary_iarchive.hpp>
+#include <boost/archive/binary_oarchive.hpp>
+
+namespace PLATO{
+namespace Utility{
+
+class MPIUtils{
+
+public:
+ template<class T>
+ static std::pair<unsigned int, const char *> pack(const T& data);
+
+ template<class T>
+ static void unpack(unsigned int, const char*, T& data);
+
+
+ static bool threadsafe_mpi;
+
+};
+
+template <class T>
+std::pair<unsigned int, const char*> MPIUtils::pack(const T& data){
+ std::stringstream ss_out;
+ boost::archive::binary_oarchive oa(ss_out);
+
+ oa << data;
+ unsigned int bufsz = ss_out.tellp();
+ ss_out.seekg(0);
+ char* buf_out = new char[bufsz];
+ ss_out.read(buf_out,bufsz);
+
+ return std::pair<unsigned int, const char*>(bufsz, buf_out);
+}
+
+template <class T>
+void MPIUtils::unpack(unsigned int bufsz, const char* in_buf, T& data){
+ std::stringstream ss_resp;
+ ss_resp.write(in_buf, bufsz);
+ ss_resp.seekg(0);
+ boost::archive::binary_iarchive ia_resp(ss_resp);
+ ia_resp >> data;
+}
+
+}
+}
+
+
+#endif
diff --git a/method_lib/util/Missing.cpp b/method_lib/util/Missing.cpp
new file mode 100644
index 0000000..760f740
--- /dev/null
+++ b/method_lib/util/Missing.cpp
@@ -0,0 +1,70 @@
+#include "Missing.h"
+
+#include <cmath>
+
+#include "data/DataSet.h"
+#include "data/Marker.h"
+#include "data/Sample.h"
+
+using std::string;
+
+using PLATO::Data::DataSet;
+using PLATO::Data::Marker;
+using PLATO::Data::Sample;
+
+namespace PLATO{
+namespace Utility{
+
+double Missing::sampleMissing(const DataSet& ds, const Sample& s){
+ unsigned int n_marker = 0;
+ unsigned int n_missing = 0;
+
+ DataSet::const_marker_iterator mi = ds.beginMarker();
+ while(mi != ds.endMarker()){
+ if(s.getAdditiveGeno(**mi) == Sample::missing_allele){
+ ++n_missing;
+ }
+ ++mi;
+ ++n_marker;
+ }
+
+ return n_missing / static_cast<double>(n_marker);
+
+}
+
+double Missing::markerMissing(const DataSet& ds, const Marker& m){
+ unsigned int n_sample = 0;
+ unsigned int n_missing = 0;
+
+ DataSet::const_sample_iterator si = ds.beginSample();
+ while(si != ds.endSample()){
+ if((*si)->getAdditiveGeno(m) == Sample::missing_allele){
+ ++n_missing;
+ }
+ ++n_sample;
+ ++si;
+ }
+
+ return n_missing / static_cast<double>(n_sample);
+
+}
+
+double Missing::traitMissing(const DataSet& ds, const string& t){
+ unsigned int n_sample = 0;
+ unsigned int n_missing = 0;
+
+ DataSet::const_sample_iterator si = ds.beginSample();
+ while(si != ds.endSample()){
+ if(std::isnan(ds.getTrait(t, *si))){
+ ++n_missing;
+ }
+ ++n_sample;
+ ++si;
+ }
+
+ return n_missing / static_cast<double>(n_sample);
+
+}
+
+}
+}
diff --git a/method_lib/util/Missing.h b/method_lib/util/Missing.h
new file mode 100644
index 0000000..cbb4afc
--- /dev/null
+++ b/method_lib/util/Missing.h
@@ -0,0 +1,29 @@
+#ifndef UTILITY_MISSING_H
+#define UTILITY_MISSING_H
+
+#include <string>
+
+namespace PLATO{
+
+namespace Data{
+class DataSet;
+class Marker;
+class Sample;
+}
+
+
+namespace Utility{
+/*!
+ * \brief A class to calculate the missingness by sample or by marker
+ */
+class Missing{
+public:
+ static double markerMissing(const Data::DataSet& ds, const Data::Marker& m);
+ static double sampleMissing(const Data::DataSet& ds, const Data::Sample& s);
+ static double traitMissing(const Data::DataSet& ds, const std::string& t);
+};
+
+}
+}
+
+#endif
diff --git a/method_lib/util/OutputPLINK.cpp b/method_lib/util/OutputPLINK.cpp
new file mode 100644
index 0000000..0004c6f
--- /dev/null
+++ b/method_lib/util/OutputPLINK.cpp
@@ -0,0 +1,40 @@
+/*
+ * OutputPLINK.cpp
+ *
+ * Created on: Dec 3, 2013
+ * Author: jrw32
+ */
+
+#include "OutputPLINK.h"
+
+#include "data/Marker.h"
+#include "data/Sample.h"
+
+#include "InputManager.h"
+
+using PLATO::Data::Marker;
+using PLATO::Data::Sample;
+
+namespace PLATO {
+namespace Utility {
+
+void OutputPLINK::printPEDHeader(std::ostream& ped_f, const Sample& s) const {
+ ped_f << s.getFID() << "\t" << s.getID() << "\t"
+ << (s.getFather() == 0 ? "0" : s.getFather()->getID()) << "\t"
+ << (s.getMother() == 0 ? "0" : s.getMother()->getID()) << "\t"
+ << (s.isGenderKnown() ? (s.isFemale() + 1) : 0) << "\t"
+ << (s.isAffectedKnown() ? (s.isAffected() + 1) : -9);
+}
+
+void OutputPLINK::printMAPInfo(std::ostream& map_f, const Marker& m, bool print_alleles) const {
+ map_f << InputManager::chrIntToString(m.getChrom()) << "\t"
+ << m.getID() << "\t" << 0 << "\t" << m.getLoc();
+
+ if(print_alleles){
+ map_f << "\t" << m.getRefAllele() << "\t" << m.getAltAllele();
+ }
+
+}
+
+}
+}
diff --git a/method_lib/util/OutputPLINK.h b/method_lib/util/OutputPLINK.h
new file mode 100644
index 0000000..65df142
--- /dev/null
+++ b/method_lib/util/OutputPLINK.h
@@ -0,0 +1,37 @@
+/*
+ * OutputPLINK.h
+ *
+ * Created on: Dec 3, 2013
+ * Author: jrw32
+ */
+
+#ifndef UTILITY_OUTPUTPLINK_H
+#define UTILITY_OUTPUTPLINK_H
+
+#include <ostream>
+
+namespace PLATO {
+
+namespace Data{
+class Marker;
+class Sample;
+}
+
+namespace Utility{
+class OutputPLINK {
+public:
+ OutputPLINK(){}
+ ~OutputPLINK(){}
+
+protected:
+
+ void printPEDHeader(std::ostream&, const PLATO::Data::Sample&) const;
+ void printMAPInfo(std::ostream&, const PLATO::Data::Marker&, bool print_alleles=false) const;
+
+
+};
+
+}
+}
+
+#endif /* OUTPUTPLINK_H_ */
diff --git a/method_lib/util/ThreadPool.cpp b/method_lib/util/ThreadPool.cpp
new file mode 100644
index 0000000..7dbea23
--- /dev/null
+++ b/method_lib/util/ThreadPool.cpp
@@ -0,0 +1,110 @@
+/*
+ * ThreadPool.cpp
+ *
+ * Created on: Jul 29, 2014
+ * Author: jrw32
+ */
+
+#include "ThreadPool.h"
+
+#include <boost/bind.hpp>
+
+namespace PLATO{
+namespace Utility{
+
+void ThreadPool::run(boost::function<void()>& f){
+ // if everything is running, create a new thread
+ pool_mutex.lock();
+ tasks.push(f);
+
+ if(tasks.size() - available == 1 && tg.size() < max_threads){
+ createThread();
+ pool_mutex.unlock();
+
+ // give the newly created thread a chance to run
+ boost::this_thread::yield();
+
+ pool_mutex.lock();
+ }
+
+ // Add to the list of available threads
+ if(available){
+ notifier.notify_one();
+ }
+ pool_mutex.unlock();
+}
+
+ThreadPool::~ThreadPool(){
+ pool_mutex.lock();
+ running = false;
+ notifier.notify_all();
+ pool_mutex.unlock();
+
+ tg.join_all();
+
+}
+
+void ThreadPool::createThread(){
+ // no need to lock here, this is only called in the run() method
+ // and is within a lock there.
+ ++available;
+ tg.create_thread( boost::bind( &ThreadPool::pool_main, this) );
+}
+
+void ThreadPool::join_all(){
+
+ boost::unique_lock<boost::mutex> lock(pool_mutex);
+
+ // juist wait until we have all threads available for processing
+ while (available < tg.size() || !tasks.empty()) {
+ notifier.wait(lock);
+ }
+}
+
+
+void ThreadPool::pool_main(){
+
+// pool_mutex.lock();
+// ++available;
+// pool_mutex.unlock();
+
+ while (running) {
+ // Wait on condition variable while the task is empty and the pool is
+ // still running.
+ boost::unique_lock<boost::mutex> lock(pool_mutex);
+ while (tasks.empty() && running) {
+ notifier.wait(lock);
+ }
+ // If pool is no longer running, break out.
+ if (running){
+ // Copy task locally and remove from the queue. This is done within
+ // its own scope so that the task object is destructed immediately
+ // after running the task. This is useful in the event that the
+ // function contains shared_ptr arguments bound via bind.
+ boost::function<void()> task = tasks.front();
+ tasks.pop();
+ --available;
+ lock.unlock();
+
+ task();
+
+ // Task has finished, so increment count of available threads.
+ lock.lock();
+ ++available;
+ // only send a notification if there's nothing to do
+ if(tasks.empty()){
+ notifier.notify_all();
+ }
+ lock.unlock();
+ }
+ } // while running
+
+ // thread is exiting, so task is unavailable
+ pool_mutex.lock();
+ --available;
+ pool_mutex.unlock();
+}
+
+}
+}
+
diff --git a/method_lib/util/ThreadPool.h b/method_lib/util/ThreadPool.h
new file mode 100644
index 0000000..f3b98e7
--- /dev/null
+++ b/method_lib/util/ThreadPool.h
@@ -0,0 +1,68 @@
+/*
+ * ThreadPool.h
+ *
+ * Created on: Jul 29, 2014
+ * Author: jrw32
+ */
+
+#ifndef UTILITY_THREADPOOL_H
+#define UTILITY_THREADPOOL_H
+
+#include <limits>
+#include <deque>
+#include <queue>
+#include <boost/thread.hpp>
+#include <boost/function.hpp>
+
+namespace PLATO{
+namespace Utility{
+
+
+class ThreadPool{
+public:
+ ThreadPool(unsigned int max=std::numeric_limits<unsigned int>::max())
+ : max_threads(max < 1 ? 1 : max), available(0), running(true), exiting(false) {}
+ ~ThreadPool();
+
+ /*!
+ * Wait for all threads in the pool to stop (stopping the ASIO service as well)
+ */
+ void join_all();
+
+ /*!
+ * Run a given function inside a thread
+ */
+ void run(boost::function<void ()>& f);
+
+ unsigned int setThreads(unsigned int max){
+ return (max_threads = max < tg.size() ? tg.size() : max);
+ }
+
+
+private:
+
+ void pool_main();
+
+ /*!
+ * Create and start a new thread
+ */
+ void createThread();
+
+ unsigned int max_threads;
+
+ boost::mutex pool_mutex;
+ unsigned int available;
+ std::queue<boost::function<void()> > tasks;
+ boost::condition_variable notifier;
+ boost::thread_group tg;
+ bool running;
+ bool exiting;
+
+
+};
+
+}
+}
+
+
+#endif /* THREADPOOL_H_ */
diff --git a/missing b/missing
new file mode 100755
index 0000000..28055d2
--- /dev/null
+++ b/missing
@@ -0,0 +1,376 @@
+#! /bin/sh
+# Common stub for a few missing GNU programs while installing.
+
+scriptversion=2009-04-28.21; # UTC
+
+# Copyright (C) 1996, 1997, 1999, 2000, 2002, 2003, 2004, 2005, 2006,
+# 2008, 2009 Free Software Foundation, Inc.
+# Originally by Fran,cois Pinard <pinard at iro.umontreal.ca>, 1996.
+
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2, or (at your option)
+# any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+# As a special exception to the GNU General Public License, if you
+# distribute this file as part of a program that contains a
+# configuration script generated by Autoconf, you may include it under
+# the same distribution terms that you use for the rest of that program.
+
+if test $# -eq 0; then
+ echo 1>&2 "Try \`$0 --help' for more information"
+ exit 1
+fi
+
+run=:
+sed_output='s/.* --output[ =]\([^ ]*\).*/\1/p'
+sed_minuso='s/.* -o \([^ ]*\).*/\1/p'
+
+# In the cases where this matters, `missing' is being run in the
+# srcdir already.
+if test -f configure.ac; then
+ configure_ac=configure.ac
+else
+ configure_ac=configure.in
+fi
+
+msg="missing on your system"
+
+case $1 in
+--run)
+ # Try to run requested program, and just exit if it succeeds.
+ run=
+ shift
+ "$@" && exit 0
+ # Exit code 63 means version mismatch. This often happens
+ # when the user try to use an ancient version of a tool on
+ # a file that requires a minimum version. In this case we
+ # we should proceed has if the program had been absent, or
+ # if --run hadn't been passed.
+ if test $? = 63; then
+ run=:
+ msg="probably too old"
+ fi
+ ;;
+
+ -h|--h|--he|--hel|--help)
+ echo "\
+$0 [OPTION]... PROGRAM [ARGUMENT]...
+
+Handle \`PROGRAM [ARGUMENT]...' for when PROGRAM is missing, or return an
+error status if there is no known handling for PROGRAM.
+
+Options:
+ -h, --help display this help and exit
+ -v, --version output version information and exit
+ --run try to run the given command, and emulate it if it fails
+
+Supported PROGRAM values:
+ aclocal touch file \`aclocal.m4'
+ autoconf touch file \`configure'
+ autoheader touch file \`config.h.in'
+ autom4te touch the output file, or create a stub one
+ automake touch all \`Makefile.in' files
+ bison create \`y.tab.[ch]', if possible, from existing .[ch]
+ flex create \`lex.yy.c', if possible, from existing .c
+ help2man touch the output file
+ lex create \`lex.yy.c', if possible, from existing .c
+ makeinfo touch the output file
+ tar try tar, gnutar, gtar, then tar without non-portable flags
+ yacc create \`y.tab.[ch]', if possible, from existing .[ch]
+
+Version suffixes to PROGRAM as well as the prefixes \`gnu-', \`gnu', and
+\`g' are ignored when checking the name.
+
+Send bug reports to <bug-automake at gnu.org>."
+ exit $?
+ ;;
+
+ -v|--v|--ve|--ver|--vers|--versi|--versio|--version)
+ echo "missing $scriptversion (GNU Automake)"
+ exit $?
+ ;;
+
+ -*)
+ echo 1>&2 "$0: Unknown \`$1' option"
+ echo 1>&2 "Try \`$0 --help' for more information"
+ exit 1
+ ;;
+
+esac
+
+# normalize program name to check for.
+program=`echo "$1" | sed '
+ s/^gnu-//; t
+ s/^gnu//; t
+ s/^g//; t'`
+
+# Now exit if we have it, but it failed. Also exit now if we
+# don't have it and --version was passed (most likely to detect
+# the program). This is about non-GNU programs, so use $1 not
+# $program.
+case $1 in
+ lex*|yacc*)
+ # Not GNU programs, they don't have --version.
+ ;;
+
+ tar*)
+ if test -n "$run"; then
+ echo 1>&2 "ERROR: \`tar' requires --run"
+ exit 1
+ elif test "x$2" = "x--version" || test "x$2" = "x--help"; then
+ exit 1
+ fi
+ ;;
+
+ *)
+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
+ # We have it, but it failed.
+ exit 1
+ elif test "x$2" = "x--version" || test "x$2" = "x--help"; then
+ # Could not run --version or --help. This is probably someone
+ # running `$TOOL --version' or `$TOOL --help' to check whether
+ # $TOOL exists and not knowing $TOOL uses missing.
+ exit 1
+ fi
+ ;;
+esac
+
+# If it does not exist, or fails to run (possibly an outdated version),
+# try to emulate it.
+case $program in
+ aclocal*)
+ echo 1>&2 "\
+WARNING: \`$1' is $msg. You should only need it if
+ you modified \`acinclude.m4' or \`${configure_ac}'. You might want
+ to install the \`Automake' and \`Perl' packages. Grab them from
+ any GNU archive site."
+ touch aclocal.m4
+ ;;
+
+ autoconf*)
+ echo 1>&2 "\
+WARNING: \`$1' is $msg. You should only need it if
+ you modified \`${configure_ac}'. You might want to install the
+ \`Autoconf' and \`GNU m4' packages. Grab them from any GNU
+ archive site."
+ touch configure
+ ;;
+
+ autoheader*)
+ echo 1>&2 "\
+WARNING: \`$1' is $msg. You should only need it if
+ you modified \`acconfig.h' or \`${configure_ac}'. You might want
+ to install the \`Autoconf' and \`GNU m4' packages. Grab them
+ from any GNU archive site."
+ files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}`
+ test -z "$files" && files="config.h"
+ touch_files=
+ for f in $files; do
+ case $f in
+ *:*) touch_files="$touch_files "`echo "$f" |
+ sed -e 's/^[^:]*://' -e 's/:.*//'`;;
+ *) touch_files="$touch_files $f.in";;
+ esac
+ done
+ touch $touch_files
+ ;;
+
+ automake*)
+ echo 1>&2 "\
+WARNING: \`$1' is $msg. You should only need it if
+ you modified \`Makefile.am', \`acinclude.m4' or \`${configure_ac}'.
+ You might want to install the \`Automake' and \`Perl' packages.
+ Grab them from any GNU archive site."
+ find . -type f -name Makefile.am -print |
+ sed 's/\.am$/.in/' |
+ while read f; do touch "$f"; done
+ ;;
+
+ autom4te*)
+ echo 1>&2 "\
+WARNING: \`$1' is needed, but is $msg.
+ You might have modified some files without having the
+ proper tools for further handling them.
+ You can get \`$1' as part of \`Autoconf' from any GNU
+ archive site."
+
+ file=`echo "$*" | sed -n "$sed_output"`
+ test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
+ if test -f "$file"; then
+ touch $file
+ else
+ test -z "$file" || exec >$file
+ echo "#! /bin/sh"
+ echo "# Created by GNU Automake missing as a replacement of"
+ echo "# $ $@"
+ echo "exit 0"
+ chmod +x $file
+ exit 1
+ fi
+ ;;
+
+ bison*|yacc*)
+ echo 1>&2 "\
+WARNING: \`$1' $msg. You should only need it if
+ you modified a \`.y' file. You may need the \`Bison' package
+ in order for those modifications to take effect. You can get
+ \`Bison' from any GNU archive site."
+ rm -f y.tab.c y.tab.h
+ if test $# -ne 1; then
+ eval LASTARG="\${$#}"
+ case $LASTARG in
+ *.y)
+ SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'`
+ if test -f "$SRCFILE"; then
+ cp "$SRCFILE" y.tab.c
+ fi
+ SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'`
+ if test -f "$SRCFILE"; then
+ cp "$SRCFILE" y.tab.h
+ fi
+ ;;
+ esac
+ fi
+ if test ! -f y.tab.h; then
+ echo >y.tab.h
+ fi
+ if test ! -f y.tab.c; then
+ echo 'main() { return 0; }' >y.tab.c
+ fi
+ ;;
+
+ lex*|flex*)
+ echo 1>&2 "\
+WARNING: \`$1' is $msg. You should only need it if
+ you modified a \`.l' file. You may need the \`Flex' package
+ in order for those modifications to take effect. You can get
+ \`Flex' from any GNU archive site."
+ rm -f lex.yy.c
+ if test $# -ne 1; then
+ eval LASTARG="\${$#}"
+ case $LASTARG in
+ *.l)
+ SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'`
+ if test -f "$SRCFILE"; then
+ cp "$SRCFILE" lex.yy.c
+ fi
+ ;;
+ esac
+ fi
+ if test ! -f lex.yy.c; then
+ echo 'main() { return 0; }' >lex.yy.c
+ fi
+ ;;
+
+ help2man*)
+ echo 1>&2 "\
+WARNING: \`$1' is $msg. You should only need it if
+ you modified a dependency of a manual page. You may need the
+ \`Help2man' package in order for those modifications to take
+ effect. You can get \`Help2man' from any GNU archive site."
+
+ file=`echo "$*" | sed -n "$sed_output"`
+ test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
+ if test -f "$file"; then
+ touch $file
+ else
+ test -z "$file" || exec >$file
+ echo ".ab help2man is required to generate this page"
+ exit $?
+ fi
+ ;;
+
+ makeinfo*)
+ echo 1>&2 "\
+WARNING: \`$1' is $msg. You should only need it if
+ you modified a \`.texi' or \`.texinfo' file, or any other file
+ indirectly affecting the aspect of the manual. The spurious
+ call might also be the consequence of using a buggy \`make' (AIX,
+ DU, IRIX). You might want to install the \`Texinfo' package or
+ the \`GNU make' package. Grab either from any GNU archive site."
+ # The file to touch is that specified with -o ...
+ file=`echo "$*" | sed -n "$sed_output"`
+ test -z "$file" && file=`echo "$*" | sed -n "$sed_minuso"`
+ if test -z "$file"; then
+ # ... or it is the one specified with @setfilename ...
+ infile=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'`
+ file=`sed -n '
+ /^@setfilename/{
+ s/.* \([^ ]*\) *$/\1/
+ p
+ q
+ }' $infile`
+ # ... or it is derived from the source name (dir/f.texi becomes f.info)
+ test -z "$file" && file=`echo "$infile" | sed 's,.*/,,;s,.[^.]*$,,'`.info
+ fi
+ # If the file does not exist, the user really needs makeinfo;
+ # let's fail without touching anything.
+ test -f $file || exit 1
+ touch $file
+ ;;
+
+ tar*)
+ shift
+
+ # We have already tried tar in the generic part.
+ # Look for gnutar/gtar before invocation to avoid ugly error
+ # messages.
+ if (gnutar --version > /dev/null 2>&1); then
+ gnutar "$@" && exit 0
+ fi
+ if (gtar --version > /dev/null 2>&1); then
+ gtar "$@" && exit 0
+ fi
+ firstarg="$1"
+ if shift; then
+ case $firstarg in
+ *o*)
+ firstarg=`echo "$firstarg" | sed s/o//`
+ tar "$firstarg" "$@" && exit 0
+ ;;
+ esac
+ case $firstarg in
+ *h*)
+ firstarg=`echo "$firstarg" | sed s/h//`
+ tar "$firstarg" "$@" && exit 0
+ ;;
+ esac
+ fi
+
+ echo 1>&2 "\
+WARNING: I can't seem to be able to run \`tar' with the given arguments.
+ You may want to install GNU tar or Free paxutils, or check the
+ command line arguments."
+ exit 1
+ ;;
+
+ *)
+ echo 1>&2 "\
+WARNING: \`$1' is needed, and is $msg.
+ You might have modified some files without having the
+ proper tools for further handling them. Check the \`README' file,
+ it often tells you about the needed prerequisites for installing
+ this package. You may also peek at any GNU archive site, in case
+ some other package would contain this missing \`$1' program."
+ exit 1
+ ;;
+esac
+
+exit 0
+
+# Local variables:
+# eval: (add-hook 'write-file-hooks 'time-stamp)
+# time-stamp-start: "scriptversion="
+# time-stamp-format: "%:y-%02m-%02d.%02H"
+# time-stamp-time-zone: "UTC"
+# time-stamp-end: "; # UTC"
+# End:
diff --git a/process/AlleleFreqFilter.cpp b/process/AlleleFreqFilter.cpp
new file mode 100644
index 0000000..5f81787
--- /dev/null
+++ b/process/AlleleFreqFilter.cpp
@@ -0,0 +1,64 @@
+#include "AlleleFreqFilter.h" //////CHANGE TO REAL MODULE NAME
+
+#include "data/DataSet.h"
+#include "data/Marker.h"
+
+#include "util/Logger.h"
+#include "util/Missing.h"
+
+#include <boost/lexical_cast.hpp>
+
+using std::string;
+
+using PLATO::Data::DataSet;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string AlleleFreqFilter::stepname = AlleleFreqFilter::doRegister("filter-maf");
+
+//PrintSummary()
+//used to output results after processing the data
+void AlleleFreqFilter::PrintSummary(){
+ //output for process goes here
+ //
+ Utility::Logger::log("Allele Frequency Filter: Dropped " + boost::lexical_cast<string>(_n_filtered) + " Markers.\n");
+}
+
+//process()
+//main method to get the process going and to the work
+void AlleleFreqFilter::process(DataSet& ds){
+
+ _n_filtered = 0;
+ DataSet::marker_iterator mi = ds.beginMarker();
+ float curr_maf = 0;
+ while(mi != ds.endMarker()){
+ curr_maf = (*mi)->issetMAF() ? (*mi)->getMAF() : (*mi)->calcMAF(ds);
+ if(curr_maf < _min_thresh || curr_maf > _max_thresh){
+ (*mi)->setEnabled(false);
+ ++_n_filtered;
+ }
+ ++mi;
+ }
+}
+
+po::options_description& AlleleFreqFilter::appendOptions(po::options_description& opts){
+ po::options_description subopts("Sample Call Rate Options");
+
+ subopts.add_options()
+ ("min", po::value<double>(&_min_thresh)->default_value(0.05, "0.05"),"Drop markers with MAF below this")
+ ("max", po::value<double>(&_max_thresh)->default_value(1, "1.0"),"Drop markers with MAF above this")
+ ;
+
+ opts.add(subopts);
+ return opts;
+}
+
+void AlleleFreqFilter::parseOptions(const po::variables_map& vm){
+ // no need to do anything here!
+}
+
+}
+}
diff --git a/process/AlleleFreqFilter.h b/process/AlleleFreqFilter.h
new file mode 100644
index 0000000..1396342
--- /dev/null
+++ b/process/AlleleFreqFilter.h
@@ -0,0 +1,39 @@
+#ifndef PROCESSLIB_ALLELEFREQ_FILTER_H //change to actual process name
+#define PROCESSLIB_ALLELEFREQ_FILTER_H //change to actual process name
+
+#include <string>
+
+#include "Process.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class AlleleFreqFilter : public ProcessImpl<AlleleFreqFilter>{
+private:
+ const static std::string stepname;
+
+public:
+ AlleleFreqFilter() : ProcessImpl<AlleleFreqFilter>(stepname, "Filter the dataset based on minor allele frequency") {};
+ virtual ~AlleleFreqFilter(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void PrintSummary();
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+
+ double _min_thresh;
+ double _max_thresh;
+ int _n_filtered;
+ bool _noconvert;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/AutoRegression.cpp b/process/AutoRegression.cpp
new file mode 100644
index 0000000..0f920f7
--- /dev/null
+++ b/process/AutoRegression.cpp
@@ -0,0 +1,212 @@
+#include "AutoRegression.h"
+
+#include <limits>
+#include <utility>
+#include <cmath>
+#include <cstring>
+#include <numeric>
+#include <algorithm>
+
+#include <boost/lexical_cast.hpp>
+#include <boost/serialization/export.hpp>
+
+#include <gsl/gsl_cdf.h>
+#include <gsl/gsl_multifit.h>
+#include <gsl/gsl_blas.h>
+
+#include "util/Logger.h"
+#include "util/GSLUtils.h"
+#include "util/InputManager.h"
+
+using PLATO::Data::DataSet;
+using PLATO::Analysis::Regression;
+using PLATO::Analysis::Encoding;
+using PLATO::Utility::Logger;
+using PLATO::Utility::InputManager;
+
+using std::vector;
+using std::string;
+using std::set;
+using std::deque;
+using std::pair;
+
+using boost::array;
+
+namespace po=boost::program_options;
+
+
+BOOST_CLASS_EXPORT(PLATO::ProcessLib::AutoRegression::ExtraData)
+
+namespace PLATO{
+namespace ProcessLib{
+
+const std::string AutoRegression::stepname = AutoRegression::doRegister("regress-auto");
+const std::string AutoRegression::MPIname = AutoRegression::registerMPI("regress-auto");
+
+po::options_description& AutoRegression::appendOptions(po::options_description& opts){
+ Regression::addOptions(opts);
+
+ opts.add(LogisticRegression::getExtraOptions());
+ opts.add(LinearRegression::getExtraOptions());
+ opts.add(getExtraOptions());
+
+ return opts;
+}
+
+po::options_description AutoRegression::getExtraOptions(){
+ po::options_description autoreg_opts("Auto Regression Options");
+
+ autoreg_opts.add_options()
+ ("linear", po::value<vector<string> >(&linear_traits)->composing(), "Outcomes to force linear regression")
+ ("logistic", po::value<vector<string> >(&logistic_traits)->composing(), "Outcomes to force logistic regression")
+ ;
+
+ return autoreg_opts;
+}
+
+void AutoRegression::parseOptions(const po::variables_map& vm){
+ Regression::parseOptions(vm);
+
+ if(vm.count("linear")){
+ InputManager::parseInput(vm["linear"].as<vector<string> >(), linear_set);
+ }
+
+ if(vm.count("logistic")){
+ InputManager::parseInput(vm["logistic"].as<vector<string> >(), logistic_set);
+ }
+
+ // make sure the 2 sets are mutually exclusive
+ set<string> tmp_set;
+ std::set_intersection(linear_set.begin(), linear_set.end(),
+ logistic_set.begin(), logistic_set.end(),
+ std::inserter(tmp_set, tmp_set.begin()));
+
+ if(tmp_set.size() > 0){
+ Logger::log_err("ERROR: --linear and --logistic must be mututally exclusive", true);
+ }
+
+ std::set_union(linear_set.begin(), linear_set.end(),
+ logistic_set.begin(), logistic_set.end(),
+ std::inserter(tmp_set, tmp_set.begin()));
+
+ set<string> tmp_set2;
+ std::set_intersection(tmp_set.begin(), tmp_set.end(),
+ outcome_names.begin(), outcome_names.end(),
+ std::inserter(tmp_set2, tmp_set2.begin()));
+
+ if(tmp_set.size() != tmp_set2.size() && !_phewas){
+ Logger::log_err("ERROR: Outcomes given in --linear and --logistic must also be given in --outcomes (or use --phewas)", true);
+ }
+
+}
+
+void AutoRegression::printVarHeader(const std::string& var_name, std::ofstream& of) const{
+ LogisticRegression::printVarHeader(var_name, of);
+}
+
+bool AutoRegression::initData(){
+
+ // make sure the class_data is initialized, please!
+ getExtraData();
+
+ bool good_pheno = true;
+
+ // first, check to see if this is in either linear or logistic
+ if(linear_set.count(*output_itr)){
+ analysis_type = class_data->analysis_type = LINEAR;
+ } else if(logistic_set.count(*output_itr)){
+ analysis_type = class_data->analysis_type = LOGISTIC;
+ } else {
+ set<float> uniq_pheno;
+ for(unsigned int i=0; i<_pheno.size() && uniq_pheno.size() <= 2; i++){
+ if(!std::isnan(_pheno[i])){
+ uniq_pheno.insert(_pheno[i]);
+ }
+ }
+
+ if(uniq_pheno.size() > 2){
+ analysis_type = class_data->analysis_type = LINEAR;
+ } else if(uniq_pheno.size() == 2){
+ analysis_type = class_data->analysis_type = LOGISTIC;
+ } else {
+ Utility::Logger::log_err("ERROR: Desired phenotype has only " +
+ boost::lexical_cast<string>(uniq_pheno.size()) +
+ " unique value(s); Regression will almost certainly fail!", outcome_names.size() <= 1);
+ good_pheno = false;
+ }
+ }
+
+ //transform the phenotype from [0,1]
+ if(good_pheno && analysis_type == LOGISTIC){
+ good_pheno = LogisticRegression::initData();
+ } else if(good_pheno && analysis_type == LINEAR){
+ good_pheno = LinearRegression::initData();
+ }
+
+ return good_pheno;
+}
+
+Regression::calc_fn& AutoRegression::getCalcFn() const{
+ return AutoRegression::calculate;
+}
+
+const Regression::ExtraData* AutoRegression::getExtraData() const{
+ if(!class_data){
+ class_data = new ExtraData(*LogisticRegression::getExtraData());
+ class_data->analysis_type = LINEAR;
+ }
+
+ return class_data;
+}
+
+Regression::Result* AutoRegression::calculate(
+ const double* Y, const double* data,
+ unsigned int n_cols, unsigned int n_rows, unsigned int offset,
+ unsigned int n_covars, bool run_null, const Regression::ExtraData* other_data){
+
+ const ExtraData* extra_data = dynamic_cast<const ExtraData*>(other_data);
+ if(!extra_data){
+ // something went VERY wrong here!
+ return 0;
+ }
+
+ Result* r = 0;
+ string analysis;
+ // use the approprate calculate method
+ if(extra_data->analysis_type == 0){
+ analysis="linear";
+ r = LinearRegression::calculate(Y, data, n_cols, n_rows, offset, n_covars, run_null, other_data);
+ } else if (extra_data->analysis_type == 1){
+ analysis="logistic";
+ r = LogisticRegression::calculate(Y, data, n_cols, n_rows, offset, n_covars, run_null, other_data);
+ }
+
+ // add the analysis type to the result
+ if(r){
+ r->prefix += analysis + extra_data->sep + r->prefix;
+ }
+
+ return r;
+
+}
+
+void AutoRegression::process(DataSet& ds){
+ Regression::runRegression(ds);
+}
+
+void AutoRegression::printExtraHeader(std::ofstream& of){
+ of << "Analysis_Type" << sep;
+ LogisticRegression::printExtraHeader(of);
+}
+
+string AutoRegression::printExtraResults(const Result& r){
+ return boost::lexical_cast<string>(r.converged) + sep;
+}
+
+void AutoRegression::calculate_MPI(unsigned int bufsz, const char* buf,
+ deque<pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv){
+ Regression::calculate_MPI(bufsz, buf, result_queue, result_mutex, cv, AutoRegression::calculate);
+}
+
+}
+}
diff --git a/process/AutoRegression.h b/process/AutoRegression.h
new file mode 100644
index 0000000..34829c9
--- /dev/null
+++ b/process/AutoRegression.h
@@ -0,0 +1,111 @@
+#ifndef PROCESSLIB_AUTOREGRESSION_H
+#define PROCESSLIB_AUTOREGRESSION_H
+
+#include "Process.h"
+#include "analysis/Regression.h"
+#include "LinearRegression.h"
+#include "LogisticRegression.h"
+#include "MPIProcess.h"
+
+#include <boost/array.hpp>
+#include <boost/archive/binary_iarchive.hpp>
+#include <boost/archive/binary_oarchive.hpp>
+#include <boost/archive/text_iarchive.hpp>
+#include <boost/archive/text_oarchive.hpp>
+#include <boost/serialization/serialization.hpp>
+
+#include <utility>
+
+namespace PLATO{
+namespace ProcessLib{
+
+class AutoRegression : public ProcessImpl<AutoRegression>,
+ public virtual Analysis::Regression, public MPIProcessImpl<AutoRegression>,
+ private virtual LinearRegression, private virtual LogisticRegression{
+
+private:
+ const static std::string stepname;
+ const static std::string MPIname;
+
+public:
+ AutoRegression() : LinearRegression(), LogisticRegression(), ProcessImpl<AutoRegression>(stepname, "Run Auto Regression"),
+ MPIProcessImpl<AutoRegression>(MPIname), class_data(0) {};
+ virtual ~AutoRegression(){if(class_data){delete class_data;}};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+
+ virtual const std::string& getMPIName() const{ return MPIProcessImpl<AutoRegression>::getMPIName(); }
+
+ using MPIProcessImpl<AutoRegression>::registerMPI;
+ using ProcessImpl<AutoRegression>::doRegister;
+ using ProcessImpl<AutoRegression>::create;
+
+ virtual const std::string& getName() const{ return ProcessImpl<AutoRegression>::getName(); }
+ virtual const std::string& getDesc() const{ return ProcessImpl<AutoRegression>::getDesc(); }
+
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+ virtual boost::program_options::options_description getExtraOptions();
+
+ virtual calc_fn& getCalcFn() const;
+ virtual const Regression::ExtraData* getExtraData() const;
+
+ virtual void printVarHeader(const std::string& var_name, std::ofstream& of) const;
+ virtual bool initData();
+
+ static Result* calculate(const double* Y, const double* data,
+ unsigned int n_cols, unsigned int n_rows, unsigned int offset,
+ unsigned int n_covars, bool run_null, const Regression::ExtraData* other_data);
+
+ virtual void printExtraHeader(std::ofstream& of);
+ virtual std::string printExtraResults(const Result& r);
+
+private:
+ static boost::array<double, 4> linkFunction(double v);
+ static std::pair<float, float> calcPVal(Result* r, Result* submodel, unsigned int df, float null_ll);
+
+ template<class Archive>
+ static void* loadExtraData(const Archive& ar);
+
+public:
+ static void calculate_MPI(unsigned int bufsz, const char* buf,
+ std::deque<std::pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv);
+
+public:
+
+ enum AnalysisType {LINEAR, LOGISTIC};
+
+ class ExtraData : public LogisticRegression::ExtraData {
+ public:
+
+ AnalysisType analysis_type;
+
+ ExtraData(unsigned int n=0) : LogisticRegression::ExtraData(n) {}
+ ExtraData(const Regression::ExtraData& o) : LogisticRegression::ExtraData(o) {}
+ virtual ~ExtraData() {}
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<LogisticRegression::ExtraData>(*this);
+ ar & analysis_type;
+ }
+ };
+
+private:
+ mutable ExtraData* class_data;
+ AnalysisType analysis_type;
+
+ std::vector<std::string> linear_traits;
+ std::vector<std::string> logistic_traits;
+
+ std::set<std::string> linear_set;
+ std::set<std::string> logistic_set;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/BatchProcess.cpp b/process/BatchProcess.cpp
new file mode 100644
index 0000000..087c073
--- /dev/null
+++ b/process/BatchProcess.cpp
@@ -0,0 +1,95 @@
+/*
+ * BatchProcess.cpp
+ *
+ * Created on: Nov 26, 2013
+ * Author: jrw32
+ */
+
+#include "BatchProcess.h"
+
+#include <fstream>
+#include <vector>
+
+#include <boost/algorithm/string.hpp>
+
+#include "data/DataSet.h"
+
+namespace po=boost::program_options;
+
+using std::string;
+using std::ifstream;
+using std::vector;
+
+using PLATO::Data::DataSet;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const std::string BatchProcess::stepname = BatchProcess::doRegister("batch");
+
+po::options_description& BatchProcess::appendOptions(po::options_description& opts){
+ po::options_description batch_opts("Batch Processing Options");
+
+ batch_opts.add_options()
+ ("file,f", po::value<string>(&batch_fn)->required(),"Batch filename");
+
+ return opts.add(batch_opts);
+}
+
+void BatchProcess::process(DataSet& ds){
+ // open up that batch file...
+ ifstream input(batch_fn.c_str());
+
+ if(!input.is_open()){
+ throw std::invalid_argument("Error opening batch file: " + batch_fn);
+ }
+
+ string line;
+
+ ProcessFactory& fact = ProcessFactory::getFactory();
+ vector<Process*> process_list;
+
+ while(getline(input, line)){
+ vector<string> cmd_args;
+ boost::split(cmd_args,line,boost::is_any_of(" \t"));
+
+ // ignore empty lines and lines that begin with "#"
+ if(cmd_args.size() > 0 && cmd_args[0].size() > 0 && cmd_args[0][0] != '#'){
+ string cmd = cmd_args[0];
+ cmd_args.erase(cmd_args.begin());
+
+ Process* p = fact.Create(cmd);
+ if(p == 0){
+ throw std::invalid_argument("Error: unrecognized command: " + cmd);
+ }
+ po::options_description subopts;
+ p->addOptions(subopts);
+
+ // now, parse the remaining options, stopping at the name of the next command
+ po::variables_map subvm;
+ po::parsed_options subparsed = po::command_line_parser(cmd_args).options(subopts).run();
+ po::store(subparsed, subvm);
+ po::notify(subvm);
+
+ p->parseOptions(subvm);
+
+ process_list.push_back(p);
+ }
+ }
+
+ // Now that we have all of our processes ready to go, let's run them!
+ for(unsigned int i=0; i<process_list.size(); i++){
+ process_list[i]->run(ds);
+ }
+
+ // OK, now delete all of our processes
+ for(unsigned int i=0; i<process_list.size(); i++){
+ delete process_list[i];
+ }
+ process_list.clear();
+
+
+}
+
+}
+}
diff --git a/process/BatchProcess.h b/process/BatchProcess.h
new file mode 100644
index 0000000..672c28c
--- /dev/null
+++ b/process/BatchProcess.h
@@ -0,0 +1,39 @@
+/*
+ * BatchProcess.h
+ *
+ * Created on: Nov 26, 2013
+ * Author: jrw32
+ */
+
+#ifndef PROCESSLIB_BATCHPROCESS_H
+#define PROCESSLIB_BATCHPROCESS_H
+
+#include "Process.h"
+
+#include <string>
+
+namespace PLATO{
+namespace ProcessLib {
+
+class BatchProcess : public ProcessImpl<BatchProcess> {
+private:
+ const static std::string stepname;
+
+public:
+ BatchProcess() : ProcessImpl<BatchProcess>(stepname, "Execute commands from a file") {}
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm) {}
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ std::string batch_fn;
+
+};
+
+}
+}
+
+#endif /* BATCHPROCESS_H_ */
diff --git a/process/ConcordanceProcess.cpp b/process/ConcordanceProcess.cpp
new file mode 100644
index 0000000..5893ff4
--- /dev/null
+++ b/process/ConcordanceProcess.cpp
@@ -0,0 +1,324 @@
+/*
+ * ConcordanceProcess.cpp
+ *
+ * Created on: Nov 26, 2013
+ * Author: jrw32
+ */
+
+#include "ConcordanceProcess.h"
+
+#include <map>
+#include <fstream>
+#include <iostream>
+
+#include "data/DataSet.h"
+#include "data/Marker.h"
+#include "data/Sample.h"
+
+#include "util/Logger.h"
+
+using std::string;
+using std::map;
+using std::ofstream;
+using std::endl;
+using std::pair;
+
+using PLATO::Utility::DataLoader;
+using PLATO::Utility::Logger;
+using PLATO::Data::DataSet;
+using PLATO::Data::Sample;
+using PLATO::Data::Marker;
+
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const std::string ConcordanceProcess::stepname = ConcordanceProcess::doRegister("concordance");
+
+po::options_description& ConcordanceProcess::appendOptions(po::options_description& opts){
+ DataLoader::addOptions(opts);
+
+ po::options_description concord_opts("Concordance Options");
+
+ concord_opts.add_options()
+ ("prefix", po::value<string>(&_prefix)->default_value("concordance"), "Prefix for concordance files")
+ ("error", po::value<string>(&_error_fn)->default_value("error"), "Suffix for concordance error file")
+ ("sample", po::value<string>(&_sample_fn)->default_value("sample"), "Suffix for sample concordance file")
+ ("marker", po::value<string>(&_marker_fn)->default_value("marker"), "Suffix for marker concordance file")
+ ("marker-mismatch", po::value<string>(&_mmismatch_fn)->default_value("marker-mismatch"), "Suffix for marker mismatch file")
+ ("sample-mismatch", po::value<string>(&_smismatch_fn)->default_value("sample-mismatch"), "Suffix for sample mismatch file")
+ ("extension", po::value<string>(&_ext)->default_value("txt"), "Extension for concordance files")
+ ("inc-missing", po::bool_switch(&_incl_missing), "Consider missing genotypes in the concordance checks")
+ ("sep", po::value<string>(&_sep)->default_value("\t", "<TAB>"), "Separator for output files")
+ ;
+
+ return (opts.add(concord_opts));
+}
+
+void ConcordanceProcess::parseOptions(const po::variables_map& vm){
+ DataLoader::parseOptions(vm);
+
+ if(_mmismatch_fn != ""){
+ _mmismatch_fn = _prefix + "." + _mmismatch_fn + "." + _ext;
+ }
+ if(_smismatch_fn != ""){
+ _smismatch_fn = _prefix + "." + _smismatch_fn + "." + _ext;
+ }
+ if(_error_fn != ""){
+ _error_fn = _prefix + "." + _error_fn + "." + _ext;
+ }
+ if(_sample_fn != ""){
+ _sample_fn = _prefix + "." + _sample_fn + "." + _ext;
+ }
+ if(_marker_fn != ""){
+ _marker_fn = _prefix + "." + _marker_fn + "." + _ext;
+ }
+}
+
+void ConcordanceProcess::process(DataSet& ds){
+ DataSet alt_ds;
+ read(alt_ds);
+
+ // OK, now I can check the concordance between ds and alt_ds!
+
+ // Check to make sure that the phasing agrees!
+ if(ds.isPhased() != alt_ds.isPhased()){
+ Logger::log_err("ERROR: Cannot compare datasets with mismatched phasing", true);
+ }
+
+ // these give the correspondence between markers and samples in either dataset
+ map<const Sample*, const Sample*> sample_map;
+ map<const Marker*, const Marker*> marker_map;
+
+ // gives a map of samples -> (# errors, # checked)
+ // note that we don't need a similar marker file b/c we'll print it on the fly
+ map<const Sample*, pair<unsigned int, unsigned int> > sample_count;
+
+ // First, find all of the matching markers and samples
+ // let's sort all the markers and samples to make it easier on us
+ ds.sortMarkers();
+ alt_ds.sortMarkers();
+ ds.sortSamples();
+ alt_ds.sortSamples();
+
+ ofstream* m_mismatch_f = 0;
+ if(_mmismatch_fn != ""){
+ m_mismatch_f = new ofstream(_mmismatch_fn.c_str());
+ (*m_mismatch_f) << "Chr" << _sep << "ID" << _sep << "bploc" << _sep
+ << "in_base" << endl;
+ }
+ DataSet::const_marker_iterator mi = ds.beginMarker();
+ DataSet::const_marker_iterator ami = alt_ds.beginMarker();
+ DataSet::const_marker_iterator me = ds.endMarker();
+ DataSet::const_marker_iterator ame = alt_ds.endMarker();
+
+ while(mi != me || ami != ame){
+ if(ami == ame || **mi < **ami){
+ outputMarkerMismatch(m_mismatch_f, *mi, true);
+ ++mi;
+ } else if (mi == me || **ami < **mi){
+ outputMarkerMismatch(m_mismatch_f, *ami, false);
+ ++ami;
+ } else {
+ marker_map[*mi] = *ami;
+ ++mi;
+ ++ami;
+ }
+ }
+ if(m_mismatch_f){
+ m_mismatch_f->close();
+ delete m_mismatch_f;
+ }
+
+ ofstream* s_mismatch_f = 0;
+ if(_smismatch_fn != ""){
+ s_mismatch_f = new ofstream(_smismatch_fn.c_str());
+ (*s_mismatch_f) << "FID" << _sep << "IID" << _sep << "Sex" << _sep
+ << "Status" << _sep << "in_base" << endl;
+ }
+ DataSet::const_sample_iterator si = ds.beginSample();
+ DataSet::const_sample_iterator asi = alt_ds.beginSample();
+ DataSet::const_sample_iterator se = ds.endSample();
+ DataSet::const_sample_iterator ase = alt_ds.endSample();
+
+ while(si != se || asi != ase){
+ if(asi == ase || si == se){
+ outputSampleMismatch(s_mismatch_f, ((asi == ase) ? *si : *asi), asi == ase);
+ (asi == ase) ? ++si : ++asi;
+ } else if (**si < **asi){
+ outputSampleMismatch(s_mismatch_f, *si, true);
+ ++si;
+ } else if (**asi < **si){
+ outputSampleMismatch(s_mismatch_f, *asi, false);
+ ++asi;
+ } else {
+ sample_map[*si] = *asi;
+ sample_count[*si] = std::make_pair(0,0);
+ ++si;
+ ++asi;
+ }
+
+ }
+ if(s_mismatch_f){
+ s_mismatch_f->close();
+ delete s_mismatch_f;
+ }
+
+ // At this point, we have the markers and samples ready to go. Let's start
+ // a concordance check!
+ ofstream* error_f = 0;
+ ofstream* sample_f = 0;
+ ofstream* marker_f = 0;
+
+ if(_error_fn != ""){
+ error_f = new ofstream(_error_fn.c_str());
+ (*error_f) << "FID" << _sep << "IID" << _sep << "Chr" << _sep
+ << "rsID" << _sep << "bploc" << _sep << "Original_Genotype"
+ << _sep << "New_Genotype" << endl;
+ }
+
+ if(_sample_fn != ""){
+ sample_f = new ofstream(_sample_fn.c_str());
+ (*sample_f) << "FID" << _sep << "IID" << _sep << "Sex" << _sep
+ << "Status" << _sep << "Errors" << _sep << "Total_Compared"
+ << _sep << "%Concordance" << endl;
+ }
+
+ if(_marker_fn != ""){
+ marker_f = new ofstream(_marker_fn.c_str());
+ (*marker_f) << "Chr" << _sep << "rsID" << _sep << "bploc" << _sep << "Errors"
+ << _sep << "Total_Compared" << _sep << "%Concordance" << endl;
+ }
+
+ map<const Marker*, const Marker*>::const_iterator mmi = marker_map.begin();
+ bool err = false;
+ bool cmp = false;
+ while(mmi != marker_map.end()){
+ map<const Sample*, const Sample*>::const_iterator ssi = sample_map.begin();
+ map<const Sample*, pair<unsigned int, unsigned int> >::iterator sci = sample_count.begin();
+ unsigned int n_err = 0;
+ unsigned int n_comp = 0;
+ while(ssi != sample_map.end()){
+ unsigned char res = match(error_f, (*mmi).first, (*ssi).first,
+ (*mmi).second, (*ssi).second, ds.isPhased());
+
+ cmp = _incl_missing || (res & 2);
+ err = cmp && (res & 1);
+
+ n_err += err;
+ n_comp += cmp;
+ (*sci).second.first += err;
+ (*sci).second.second += cmp;
+
+ ++sci;
+ ++ssi;
+ }
+
+ if(marker_f){
+ printMarker(*marker_f, *((*mmi).first));
+ (*marker_f) << _sep << n_err << _sep << n_comp << _sep
+ << 100 * (n_comp - n_err) / static_cast<float>(n_comp) << endl;
+ }
+
+ ++mmi;
+ }
+
+
+ if(error_f){
+ error_f->close();
+ delete error_f;
+ }
+
+ if(marker_f){
+ marker_f->close();
+ delete marker_f;
+ }
+
+ if(sample_f){
+ // Before we close, let's go ahead and output the sample concordance file
+ map<const Sample*, pair<unsigned int, unsigned int> >::const_iterator sc_itr = sample_count.begin();
+ while(sc_itr != sample_count.end()){
+
+ printSample(*sample_f, *((*sc_itr).first));
+ (*sample_f) << _sep
+ << (*sc_itr).second.first << _sep
+ << (*sc_itr).second.second << _sep
+ << 100 * ((*sc_itr).second.second - (*sc_itr).second.first) / static_cast<float>((*sc_itr).second.second) << endl;
+
+ ++sc_itr;
+ }
+
+ sample_f->close();
+ delete sample_f;
+ }
+}
+
+unsigned char ConcordanceProcess::match(ofstream* error_f, const Marker* m, const Sample* s,
+ const Marker* a_m, const Sample* a_s, bool phased) const{
+
+ pair<unsigned char, unsigned char> g1 = s->getGeno(*m);
+ pair<unsigned char, unsigned char> g2 = a_s->getGeno(*a_m);
+
+ bool err = false;
+ bool present = !(s->isMissing(*m) || a_s->isMissing(*a_m));
+
+ const string& a11 = m->getAllele(g1.first);
+ const string& a12 = m->getAllele(g1.second);
+ const string& a21 = a_m->getAllele(g2.first);
+ const string& a22 = a_m->getAllele(g2.second);
+
+ if(phased){
+ err = ((a11 != a21) || (a12 != a22));
+ } else {
+ if(a11 == a21){
+ err = (a12 != a22);
+ } else if (a11 == a22){
+ err = (a12 != a21);
+ } else {
+ err = true;
+ }
+ }
+
+ if(err && error_f){
+ printSample(*error_f, *s, false);
+ (*error_f) << _sep;
+ printMarker(*error_f, *m);
+ (*error_f) << _sep << a11 << (phased ? "|" : "/") << a12 << _sep
+ << a21 << (phased ? "|" : "/") << a22 << endl;
+ }
+
+ unsigned char ret= (present * 2) | (err * 1);
+
+ return ret;
+}
+
+void ConcordanceProcess::outputMarkerMismatch(ofstream* f, const Marker* m, bool in_base) const {
+ if(f){
+ printMarker(*f, *m);
+ (*f) << _sep << in_base << endl;
+ }
+}
+void ConcordanceProcess::outputSampleMismatch(std::ofstream* f, const Data::Sample* s, bool in_base) const {
+ if(f){
+ printSample(*f, *s);
+ (*f) << _sep << in_base << endl;
+ }
+}
+
+void ConcordanceProcess::printMarker(ofstream& f, const Marker& m) const {
+ f << m.getChromStr() << _sep << m.getID() << _sep << m.getLoc();
+}
+
+void ConcordanceProcess::printSample(ofstream& f, const Sample& s, bool extra_data) const{
+ f << s.getFID() << _sep << s.getID();
+
+ if(extra_data){
+ f << _sep << (s.isGenderKnown() ? (s.isMale() ? "M" : "F") : "U") << _sep
+ << (s.isAffectedKnown() ? (s.isAffected() ? "Y" : "N") : "U");
+ }
+}
+
+}
+}
diff --git a/process/ConcordanceProcess.h b/process/ConcordanceProcess.h
new file mode 100644
index 0000000..a4939c2
--- /dev/null
+++ b/process/ConcordanceProcess.h
@@ -0,0 +1,63 @@
+/*
+ * ConcordanceProcess.h
+ *
+ * Created on: Nov 26, 2013
+ * Author: jrw32
+ */
+
+#ifndef PROCESSLIB_CONCORDNACEPROCESS_H
+#define PROCESSLIB_CONCORDANCEPROCESS_H
+
+#include "Process.h"
+#include "util/DataLoader.h"
+
+#include <iosfwd>
+
+namespace PLATO{
+namespace ProcessLib {
+
+class ConcordanceProcess : public ProcessImpl<ConcordanceProcess>, public Utility::DataLoader {
+
+private:
+ const static std::string stepname;
+
+public:
+ ConcordanceProcess() : ProcessImpl<ConcordanceProcess>(stepname, "Command to check concordance") {};
+ virtual ~ConcordanceProcess(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ // check to see if the genotypes match at a given point
+ // return value & 1 gives if they did not match
+ // return value & 2 gives if none were missing
+ unsigned char match(std::ofstream* error_f, const Data::Marker* m, const Data::Sample* s,
+ const Data::Marker* a_m, const Data::Sample* a_s, bool phased) const;
+
+ void outputMarkerMismatch(std::ofstream* f, const Data::Marker* m, bool in_base) const;
+ void outputSampleMismatch(std::ofstream* f, const Data::Sample* s, bool in_base) const;
+
+ void printMarker(std::ofstream& f, const Data::Marker& m) const;
+ void printSample(std::ofstream& f, const Data::Sample& s, bool extra_data=true) const;
+
+private:
+ std::string _prefix;
+ std::string _mmismatch_fn;
+ std::string _smismatch_fn;
+ std::string _error_fn;
+ std::string _sample_fn;
+ std::string _marker_fn;
+ std::string _ext;
+ std::string _sep;
+
+ bool _incl_missing;
+};
+
+}
+}
+
+#endif /* ConcordanceProcess_H_ */
diff --git a/process/ExampleModule.cpp b/process/ExampleModule.cpp
new file mode 100644
index 0000000..cca1ba8
--- /dev/null
+++ b/process/ExampleModule.cpp
@@ -0,0 +1,58 @@
+#include "ExampleModule.h" //////CHANGE TO REAL MODULE NAME
+
+#include "data/DataSet.h"
+
+#include <iostream>
+
+using std::cout;
+using std::endl;
+using std::string;
+
+using PLATO::Data::DataSet;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string ExampleModule::stepname = ExampleModule::doRegister("example");
+
+//PrintSummary()
+//used to output results after processing the data
+void ExampleModule::PrintSummary(){
+ //output for process goes here
+ //
+ cout << "Hi, I'm in the ExampleModule PrintSummary method\n";
+}
+
+//process()
+//main method to get the process going and to the work
+void ExampleModule::process(DataSet& ds){
+ //main processing of step goes here.
+ cout << "Hi, I'm in the ExampleModule process method\n";
+ cout << "I'm going to process " << ds.num_loci() << " markers, " << ds.num_pedigrees() << " families, and " << ds.num_inds() << " samples!\n";
+
+}
+
+po::options_description& ExampleModule::appendOptions(po::options_description& opts){
+ po::options_description subopts("Example Options");
+
+ subopts.add_options()
+ ("arg", po::value<string>(&arg_string),"Example string argument")
+ ("switch", po::bool_switch(&arg_bool), "Example switch");
+
+ opts.add(subopts);
+ return opts;
+}
+
+void ExampleModule::parseOptions(const po::variables_map& vm){
+ cout << "Parsing the options for the example module" << endl;
+ cout << "NOTE: all variables should be set already, this is just meant "
+ << "to do sophisticated post-processing beyond setting variables\n";
+ cout << "You values are:\n";
+ cout << "\targ: " << arg_string << std::endl;
+ cout << "\tswitch: " << arg_bool << std::endl;
+}
+
+}
+}
diff --git a/process/ExampleModule.h b/process/ExampleModule.h
new file mode 100644
index 0000000..89f5114
--- /dev/null
+++ b/process/ExampleModule.h
@@ -0,0 +1,36 @@
+#ifndef PROCESSLIB_EXAMPLEMODULE_H //change to actual process name
+#define PROCESSLIB_EXAMPLEMODULE_H //change to actual process name
+
+#include <string>
+
+#include "Process.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class ExampleModule : public ProcessImpl<ExampleModule>{
+private:
+ const static std::string stepname;
+
+public:
+ ExampleModule() : ProcessImpl<ExampleModule>(stepname, "Example Command - please remove in released version") {};
+ virtual ~ExampleModule(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void PrintSummary();
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ std::string arg_string;
+ bool arg_bool;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/InputProcess.cpp b/process/InputProcess.cpp
new file mode 100644
index 0000000..ff08cf9
--- /dev/null
+++ b/process/InputProcess.cpp
@@ -0,0 +1,33 @@
+/*
+ * InputProcess.cpp
+ *
+ * Created on: Nov 26, 2013
+ * Author: jrw32
+ */
+
+#include "InputProcess.h"
+
+using PLATO::Utility::DataLoader;
+using PLATO::Data::DataSet;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const std::string InputProcess::stepname = InputProcess::doRegister("load-data");
+
+void InputProcess::process(DataSet& ds){
+ read(ds);
+}
+
+po::options_description& InputProcess::appendOptions(po::options_description& opts){
+ return DataLoader::addOptions(opts);
+}
+
+void InputProcess::parseOptions(const po::variables_map& vm){
+ DataLoader::parseOptions(vm);
+}
+
+}
+}
diff --git a/process/InputProcess.h b/process/InputProcess.h
new file mode 100644
index 0000000..32fa8b8
--- /dev/null
+++ b/process/InputProcess.h
@@ -0,0 +1,37 @@
+/*
+ * InputProcess.h
+ *
+ * Created on: Nov 26, 2013
+ * Author: jrw32
+ */
+
+#ifndef PROCESSLIB_INPUTPROCESS_H
+#define PROCESSLIB_INPUTPROCESS_H
+
+#include "Process.h"
+#include "util/DataLoader.h"
+
+namespace PLATO{
+namespace ProcessLib {
+
+class InputProcess : public ProcessImpl<InputProcess>, private Utility::DataLoader {
+
+private:
+ const static std::string stepname;
+
+public:
+ InputProcess() : ProcessImpl<InputProcess>(stepname, "Command to load data into PLATO"), DataLoader() {};
+ virtual ~InputProcess(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+};
+
+}
+}
+
+#endif /* INPUTPROCESS_H_ */
diff --git a/process/LinearRegression.cpp b/process/LinearRegression.cpp
new file mode 100644
index 0000000..dc6ce96
--- /dev/null
+++ b/process/LinearRegression.cpp
@@ -0,0 +1,283 @@
+#include "LinearRegression.h"
+
+#include <limits>
+#include <utility>
+#include <cmath>
+#include <set>
+#include <algorithm>
+
+#include <gsl/gsl_cdf.h>
+#include <gsl/gsl_multifit.h>
+#include <gsl/gsl_statistics.h>
+#include <gsl/gsl_blas.h>
+
+#include "util/Logger.h"
+#include "util/GSLUtils.h"
+
+using PLATO::Data::DataSet;
+using PLATO::Analysis::Regression;
+using PLATO::Analysis::Encoding;
+using PLATO::Utility::Logger;
+
+using std::vector;
+using std::string;
+using std::fabs;
+using std::log;
+using std::exp;
+using std::set;
+using std::pair;
+using std::map;
+using std::deque;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const std::string LinearRegression::stepname = LinearRegression::doRegister("linear");
+const std::string LinearRegression::MPIName = LinearRegression::registerMPI("linear");
+
+
+po::options_description& LinearRegression::appendOptions(po::options_description& opts){
+ Regression::addOptions(opts);
+
+ opts.add(getExtraOptions());
+
+ return opts;
+}
+
+po::options_description LinearRegression::getExtraOptions(){
+ return po::options_description("Linear Regression Options");
+}
+
+void LinearRegression::parseOptions(const po::variables_map& vm){
+ Regression::parseOptions(vm);
+}
+
+bool LinearRegression::initData(){
+
+ bool good_pheno = false;
+
+ // NOTE: an empty loop where I test if a phenotype is nonmissing (i.e. not NAN)
+ // AND assign that result to good_pheno
+ for(unsigned int i=0; i<_pheno.size() && !(good_pheno = std::isfinite(_pheno[i])); i++);
+
+ if(!good_pheno){
+ Logger::log_err("ERROR: Given phenotype is completely missing", outcome_names.size() <= 1);
+ }
+ return good_pheno;
+}
+
+Regression::calc_fn& LinearRegression::getCalcFn() const{
+ return (LinearRegression::calculate);
+}
+
+Regression::Result* LinearRegression::calculate(
+ const double* Y, const double* data,
+ unsigned int n_cols, unsigned int n_rows, unsigned int offset,
+ unsigned int n_covars, bool run_null, const Regression::ExtraData* extra_data){
+
+ //const extraData* extra_data = (const extraData*) (other_data);
+
+ // Note: n_cols is the number of columns in the data vector, which is
+ // 1 + # of predictor variables
+
+ // Find the number of predictor variables in the reduced model
+
+ unsigned int reduced_vars = n_covars + 1;
+ Result* r = new Result(n_cols - 1 - extra_data->base_covars);
+
+ // If this is the case, we need to find the result for running the regression
+ // on the reduced model
+ if(reduced_vars != 1){
+
+ // If this is the case, we have a situation where the reduced model is
+ // not quite down to our covariates, so our "new_covars" should be
+ // the size of the covariates
+ unsigned int new_covars = n_covars > extra_data->base_covars ? extra_data->base_covars : 0;
+
+ // the offset is now the old offset + difference in the number of added variables
+ if(run_null || offset == 0){
+ r->submodel = calculate(Y, data, reduced_vars, n_rows,
+ offset + n_cols - (reduced_vars), new_covars, run_null, extra_data);
+ }
+
+ }
+
+ // We want to calculate the best fit for X*b = y
+
+ gsl_matrix_const_view data_mv = gsl_matrix_const_view_array_with_tda(data, n_rows, n_cols, offset + n_cols);
+
+ gsl_matrix* P = gsl_matrix_alloc(n_cols, n_cols);
+ r->n_dropped = Utility::GSLUtils::checkColinear(&data_mv.matrix, P);
+
+ gsl_matrix* A = gsl_matrix_alloc(n_rows, n_cols);
+
+ // Now, we're done with all of the SVD nonsense, we can set
+ // A = X * P (remember, X is our original data, but it's const!)
+ gsl_blas_dgemm(CblasNoTrans, CblasNoTrans, 1.0, &data_mv.matrix, P, 0.0, A);
+
+ unsigned int n_indep = n_cols - r->n_dropped;
+
+ // Now, let's make X a view of only the first linearly independent columns
+ // of A
+ gsl_matrix_const_view X = gsl_matrix_const_submatrix(A,0,0,n_rows, n_indep);
+
+ // At this point, we have our X matrix set appropriately
+ // Let's set up our other data
+ gsl_vector_const_view y_vec = gsl_vector_const_view_array(Y, n_rows);
+
+ // First, let's make sure to initialize everything to 0, please!
+ gsl_vector* beta = gsl_vector_calloc(n_cols);
+
+ // now, get the proper sized array
+ gsl_vector_view bv = gsl_vector_subvector(beta, 0, n_indep);
+ gsl_vector* resid = gsl_vector_alloc(n_rows);
+
+ // Again, let's make that covariance matrix all 0's!
+ gsl_matrix* cov_mat = gsl_matrix_calloc(n_cols, n_cols);
+
+ // We only want the leading n_indep x n_indep matrix here
+ gsl_matrix_view cov_view = gsl_matrix_submatrix(cov_mat,0,0,n_indep, n_indep);
+ gsl_matrix* cov = &cov_view.matrix;
+
+ double chisq;
+
+ gsl_multifit_linear_workspace* ws = gsl_multifit_linear_alloc(n_rows, n_indep);
+
+ gsl_multifit_linear(&X.matrix, &y_vec.vector, &bv.vector, cov, &chisq, ws);
+ gsl_multifit_linear_residuals(&X.matrix, &y_vec.vector, &bv.vector, resid);
+
+ // OK, now we have our coefficients! It's that easy!
+ // Well, sort of... now we have to un-permute everything if we had some issues
+ // with colinearity
+
+ // Note: to unpermute, multiply by P transpose!
+ // Also, we need to unpermute both the rows AND columns of cov_mat
+ //bv = gsl_vector_view_array(r->beta_vec, n_cols);
+ gsl_matrix* _cov_work = gsl_matrix_calloc(n_cols, n_cols);
+ // permute columns
+ gsl_blas_dgemm(CblasNoTrans, CblasTrans, 1.0, cov_mat, P, 0.0, _cov_work);
+ // permute rows
+ gsl_blas_dgemm(CblasTrans, CblasNoTrans, 1.0, P, _cov_work, 0.0, cov_mat);
+ gsl_matrix_free(_cov_work);
+
+ gsl_vector* _bv_work = gsl_vector_alloc(n_cols);
+ gsl_vector_memcpy(_bv_work, beta);
+ gsl_blas_dgemv(CblasTrans, 1.0, P, _bv_work, 0.0, beta);
+
+ // create a set of all of the removed indices
+ // I'm going to re-use _bv_work from earlier to save a few bytes of memory
+/* gsl_vector* idx_permu = gsl_vector_calloc(n_cols);
+ for(unsigned int i=0; i<n_cols; i++){
+ gsl_vector_set(_bv_work, i, i);
+ }
+ gsl_blas_dgemv(CblasNoTrans, 1.0, P, _bv_work, 0.0, idx_permu);
+ set<unsigned int> permu_idx_set(idx_permu->data + n_indep, idx_permu->data + n_cols);
+
+ gsl_vector_free(idx_permu);
+*/ gsl_vector_free(_bv_work);
+
+ unsigned int idx_offset = 1+extra_data->base_covars;
+ for(unsigned int i=0; i<n_cols-idx_offset; i++){
+ double c = gsl_vector_get(beta, i+idx_offset);
+ double se = sqrt(gsl_matrix_get(cov_mat, i+idx_offset, i+idx_offset));
+
+ if(se > 0){
+
+ r->coeffs[i] = c;
+ r->stderr[i] = se;
+ // t-val = | beta / stderr |
+ if(extra_data->encoding == Encoding::WEIGHTED){
+ // this assumes that as df -> /inf, T -> Norm, and Norm^2 = ChiSq
+ r->p_vals[i] = gsl_cdf_chisq_Q( pow( c/se , 2) , 2);
+ }else{
+ r->p_vals[i] = 2*gsl_cdf_tdist_Q(fabs(c / se),n_rows-n_cols+1);
+ }
+ } else {
+ // If this is true, this column was dropped from analysis!
+ r->coeffs[i] = std::numeric_limits<float>::quiet_NaN();
+ r->stderr[i] = std::numeric_limits<float>::quiet_NaN();
+ r->p_vals[i] = std::numeric_limits<float>::quiet_NaN();
+ }
+
+ }
+
+ // We want to see if there are extra degrees of freedom, which can happen in
+ // the case of the "categorical" model
+ // we have an extra df per marker in the categorically encoded model
+ // We only have markers if we are not excluding markers and the
+ // number of columns is at least as many as the number of covariates
+ // (i.e. this isn;t the "null" model)
+
+ // first, start off with just the number of independent columns
+ r->df = findDF(P, reduced_vars, r->n_dropped, extra_data->extra_df_col, extra_data->n_extra_df_col);
+
+ Result* curr_res = r;
+
+ double tss = gsl_stats_tss(Y, 1, n_rows);
+ string extraSuff = "";
+
+ unsigned int df = 0;
+ while(curr_res){
+ df += curr_res->df;
+ pair<float, float> pv_rsq = calcPVal(r, curr_res, chisq, tss, n_rows, df);
+
+ if(curr_res == r){
+ r->p_val = pv_rsq.first;
+ r->r_squared = pv_rsq.second;
+ } else if(curr_res->n_vars > 0) {
+ extraSuff = boost::lexical_cast<string>(pv_rsq.first) + extra_data->sep;
+ break;
+ }
+
+ curr_res = curr_res->submodel;
+ }
+
+ r->suffix += extraSuff;
+
+ // I have no idea if the log_likelihood is correct!!
+ r->log_likelihood = 0.5 * (-n_rows * (log(2*M_PI)+1 - log(n_rows) + log(chisq)));
+ //double pv_test = gsl_cdf_chisq_Q(r->log_likelihood,1);
+
+ // Make sure to clean up after yourself!
+
+ gsl_vector_free(beta);
+ gsl_matrix_free(A);
+ gsl_matrix_free(P);
+ gsl_vector_free(resid);
+ gsl_matrix_free(cov_mat);
+ gsl_multifit_linear_free(ws);
+
+ return r;
+}
+
+pair<float, float> LinearRegression::calcPVal(Result* r, Result* curr_res, double chisq, double tss, unsigned int n_rows, unsigned int df){
+ pair<float, float> pv_rsq;
+ pv_rsq.first = 1;
+ pv_rsq.second = 1 - chisq/tss;
+
+ double null_rss = tss;
+ if(curr_res->submodel){
+ null_rss *= 1 - curr_res->submodel->r_squared;
+ }
+
+ if(df != 0){
+ double F=((null_rss - chisq) * (n_rows - df))/(chisq * (df));
+ pv_rsq.first = gsl_cdf_fdist_Q(std::max(0.0, F),df,n_rows-df);
+ }
+
+ return pv_rsq;
+
+}
+
+void LinearRegression::process(DataSet& ds){
+ runRegression(ds);
+}
+
+void LinearRegression::calculate_MPI(unsigned int bufsz, const char* buf, deque<pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv){
+ Regression::calculate_MPI(bufsz, buf, result_queue, result_mutex, cv, LinearRegression::calculate);
+}
+
+}
+}
diff --git a/process/LinearRegression.h b/process/LinearRegression.h
new file mode 100644
index 0000000..7bd7aa6
--- /dev/null
+++ b/process/LinearRegression.h
@@ -0,0 +1,52 @@
+#ifndef PROCESSLIB_LINEARREGRESSION_H
+#define PROCESSLIB_LINEARREGRESSION_H
+
+#include "Process.h"
+#include "analysis/Regression.h"
+#include "MPIProcess.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class LinearRegression : public ProcessImpl<LinearRegression>,
+ public virtual Analysis::Regression, public MPIProcessImpl<LinearRegression> {
+
+ friend class AutoRegression;
+
+private:
+ const static std::string stepname;
+ const static std::string MPIName;
+
+public:
+ LinearRegression() : ProcessImpl<LinearRegression>(stepname, "Run Linear Regression"),
+ MPIProcessImpl<LinearRegression>(stepname) {};
+ virtual ~LinearRegression(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual bool initData();
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+ virtual boost::program_options::options_description getExtraOptions();
+
+ virtual calc_fn& getCalcFn() const;
+
+ static Result* calculate(const double* result, const double* data,
+ unsigned int n_cols, unsigned int n_rows, unsigned int offset,
+ unsigned int n_covars, bool run_null, const Regression::ExtraData* extra_data);
+
+private:
+ static std::pair<float, float> calcPVal(Result* r, Result* submodel, double chisq, double tss,
+ unsigned int n_rows, unsigned int n_indep);
+public:
+ static void calculate_MPI(unsigned int bufsz, const char* buf,
+ std::deque<std::pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv);
+
+
+};
+
+}
+}
+
+#endif
diff --git a/process/LogisticRegression.cpp b/process/LogisticRegression.cpp
new file mode 100644
index 0000000..66e07c0
--- /dev/null
+++ b/process/LogisticRegression.cpp
@@ -0,0 +1,475 @@
+#include "LogisticRegression.h"
+
+#include <limits>
+#include <utility>
+#include <cmath>
+#include <cstring>
+#include <numeric>
+
+#include <boost/lexical_cast.hpp>
+#include <boost/serialization/export.hpp>
+
+#include <gsl/gsl_cdf.h>
+#include <gsl/gsl_multifit.h>
+#include <gsl/gsl_blas.h>
+
+#include "util/Logger.h"
+#include "util/GSLUtils.h"
+
+using PLATO::Data::DataSet;
+using PLATO::Analysis::Regression;
+using PLATO::Analysis::Encoding;
+using PLATO::Utility::Logger;
+
+using std::vector;
+using std::string;
+using std::set;
+using std::numeric_limits;
+using std::fabs;
+using std::log;
+using std::exp;
+using std::pow;
+using std::pair;
+using std::map;
+using std::deque;
+
+using boost::array;
+
+namespace po=boost::program_options;
+
+
+BOOST_CLASS_EXPORT(PLATO::ProcessLib::LogisticRegression::ExtraData)
+
+namespace PLATO{
+namespace ProcessLib{
+
+const std::string LogisticRegression::stepname = LogisticRegression::doRegister("logistic");
+const std::string LogisticRegression::MPIname = LogisticRegression::registerMPI("logistic");
+
+po::options_description& LogisticRegression::appendOptions(po::options_description& opts){
+ Regression::addOptions(opts);
+
+ opts.add(getExtraOptions());
+
+ return opts;
+}
+
+po::options_description LogisticRegression::getExtraOptions(){
+ po::options_description logreg_opts("Logistic Regression Options");
+
+ logreg_opts.add_options()
+ ("odds-ratio", po::bool_switch(&show_odds), "Display odds ratios")
+ ("max-iterations", po::value<unsigned int>(&maxIterations)->default_value(30), "Maximum number of iterations in the logistic regression")
+ ;
+
+ return logreg_opts;
+}
+
+void LogisticRegression::parseOptions(const po::variables_map& vm){
+ Regression::parseOptions(vm);
+}
+
+void LogisticRegression::printVarHeader(const std::string& var_name, std::ofstream& of) const{
+ if(!show_odds){
+ Regression::printVarHeader(var_name, of);
+ }else{
+ of << var_name << "_Pval" << sep
+ << var_name << "_OR" << sep
+ << var_name << "_SE" << sep;
+ }
+}
+
+bool LogisticRegression::initData(){
+
+ bool good_pheno = true;
+ //transform the phenotype from [0,1]
+ set<float> uniq_pheno;
+ for(unsigned int i=0; i<_pheno.size(); i++){
+ if(!std::isnan(_pheno[i])){
+ uniq_pheno.insert(_pheno[i]);
+ }
+ }
+
+ if(uniq_pheno.size() > 2){
+ Utility::Logger::log_err("WARNING: Desired phenotype has more than 2 unique values; logistic regression may not be appropriate");
+ }
+
+ if(uniq_pheno.size() < 2){
+ Utility::Logger::log_err("ERROR: Desired phenotype has only " +
+ boost::lexical_cast<string>(uniq_pheno.size()) +
+ " unique value(s); logistic regression will almost certainly fail!", outcome_names.size() <= 1);
+ good_pheno = false;
+ }
+
+ float min_pheno = *(uniq_pheno.begin());
+ float max_pheno = *(uniq_pheno.rbegin());
+ float pheno_dist = max_pheno - min_pheno;
+
+ // scale everything between 0 and 1
+ for(unsigned int i=0; i<_pheno.size(); i++){
+ _pheno[i] = (_pheno[i] - min_pheno) / pheno_dist;
+ }
+
+ return good_pheno;
+}
+
+Regression::calc_fn& LogisticRegression::getCalcFn() const{
+ return (LogisticRegression::calculate);
+}
+
+const Regression::ExtraData* LogisticRegression::getExtraData() const{
+ if(!class_data){
+ class_data = new ExtraData(*Regression::getExtraData());
+ class_data->show_odds = show_odds;
+ class_data->maxIterations = maxIterations;
+ }
+
+ return class_data;
+}
+
+Regression::Result* LogisticRegression::calculate(
+ const double* Y, const double* data,
+ unsigned int n_cols, unsigned int n_rows, unsigned int offset,
+ unsigned int n_covars, bool run_null, const Regression::ExtraData* other_data){
+
+ const ExtraData* extra_data = dynamic_cast<const ExtraData*>(other_data);
+ if(!extra_data){
+ // something went VERY wrong here!
+ return 0;
+ }
+
+ // Note: n_cols is the number of columns in the data vector, which is
+ // 1 + # of predictor variables
+
+ // Find the number of predictor variables in the reduced model
+
+ unsigned int reduced_vars = n_covars + 1;
+ Result* r = new Result(n_cols - 1 - extra_data->base_covars);
+
+ // If this is the case, we need to find the result for running the regression
+ // on the reduced model
+ if(reduced_vars != 1){
+
+ // If this is the case, we have a situation where the reduced model is
+ // not quite down to our covariates, so our "new_covars" should be
+ // the size of the covariates
+ unsigned int new_covars = n_covars > extra_data->base_covars ? extra_data->base_covars : 0;
+
+ // the offset is now the old offset + difference in the number of added variables
+ if(run_null || offset == 0){
+ r->submodel = calculate(Y, data, reduced_vars, n_rows,
+ offset + n_cols - reduced_vars, new_covars, run_null, other_data);
+ }
+ }
+
+
+ // val is the value of the logit function
+ // deriv is the derivative of the logit
+ // log_val and log_val_c are log(val) and log(1-val), respectively.
+ // NOTE: the reason we do them here is to prevent underflow; for large values
+ // of the exponent, we need to use approximations for log_val and log_val_c
+ //double val, deriv, log_val, log_val_c;
+
+ // This is the current estimate of the parameters
+ // Note: position 0 is reserved for the intercept
+
+ gsl_vector* beta = gsl_vector_calloc(n_cols);
+
+ gsl_vector* weight = gsl_vector_calloc(n_rows);
+
+ // weight vector used for IRLS procedure
+ //double weight[n_rows];
+
+ gsl_matrix_const_view data_mat = gsl_matrix_const_view_array_with_tda(data, n_rows, n_cols, offset + n_cols);
+
+ gsl_matrix* P = gsl_matrix_alloc(n_cols, n_cols);
+ // First, let's check for colinearity!
+ r->n_dropped = Utility::GSLUtils::checkColinear(&data_mat.matrix, P);
+
+ unsigned int n_indep = n_cols - r->n_dropped;
+
+ // gsl weight vector for IRLS procedure
+ //gsl_vector_view w = gsl_vector_view_array(weight, n_rows);
+
+ // Right-hand side of the IRLS equation. Defined to be X*w_t + S_t^-1*(y-mu_t)
+ // Or, in our parlance: rhs_i = (X*beta_t)_i + 1/deriv * (y_i - val)
+ gsl_vector* rhs = gsl_vector_alloc(n_rows);
+
+ // I need these to work with the default values
+ gsl_multifit_linear_workspace *ws = gsl_multifit_linear_alloc(n_rows, n_indep);
+ gsl_matrix* cov_mat = gsl_matrix_calloc(n_cols, n_cols);
+ gsl_matrix_set_all(cov_mat, -1);
+ gsl_matrix_view cov_view = gsl_matrix_submatrix(cov_mat, 0, 0, n_indep, n_indep);
+ gsl_matrix* cov = &cov_view.matrix;
+ gsl_matrix* A = gsl_matrix_calloc(n_rows, n_cols);
+ double tmp_chisq;
+
+ // Let's perform our permutation ans set A = data * P
+ gsl_blas_dgemm(CblasNoTrans, CblasNoTrans, 1.0, &data_mat.matrix, P, 0.0, A);
+
+ // this is the previous beta vector, for checking convergence
+ gsl_vector* b_prev = gsl_vector_alloc(n_indep);
+ // make this b_prev nonzero to begin
+ gsl_vector_set_all(b_prev, 1.0);
+ gsl_vector_view b = gsl_vector_subvector(beta, 0, n_indep);
+ gsl_matrix_const_view X = gsl_matrix_const_submatrix(A, 0, 0, n_rows, n_indep);
+
+ double LLp = numeric_limits<double>::infinity(); // stores previous value of LL to check for convergence
+ double LLn, LL = 0;
+
+ LLn = 0;
+
+ // Add up all the values in Y
+ double sum_Y = std::accumulate(&Y[0],&Y[n_rows],0.0);
+
+ // get the exponent (and derivative, log and 1-log values) for the
+ // null model (i.e., best fit of the intercept parameter)
+ array<double, 4> null_v = linkFunction(log(sum_Y / (n_rows - sum_Y)));
+
+ for(unsigned int i=0; i<n_rows; i++){
+ LLn -= 2 *(Y[i] * null_v[2] + (1-Y[i]) * null_v[3]);
+ }
+
+ unsigned int numIterations = 0;
+
+ // set the tolerances in single precision, but do work in double precision!
+ double TOL= numeric_limits<float>::epsilon();
+ double MAX_vec = numeric_limits<float>::max();
+ // 2*numeric_limits<double>::epsilon() ??
+
+ // check for the following:
+ // 1) convergence of the likelihood
+ // 1a) convergence of the beta vector (distance stored in b_prev)
+ // 2) divergence of one (or more) coefficients
+ // 3) maximum number of iterations
+ while ((fabs(LLp - LL) > TOL*LLn || gsl_blas_dasum(b_prev) > TOL*n_cols*gsl_blas_dasum(&b.vector)) &&
+ gsl_blas_dasum(&b.vector) < MAX_vec &&
+ ++numIterations < extra_data->maxIterations ) {
+
+ // save the old beta vector in b_prev
+ gsl_vector_memcpy(b_prev, &b.vector);
+
+ // First, let's initialize the RHS to X*beta_t (rhs = 1 * X * b + 0* rhs)
+ gsl_blas_dgemv(CblasNoTrans, 1, &X.matrix, &b.vector, 0, rhs);
+
+ LLp = LL;
+ LL = 0;
+
+ // add to LL for each row
+ for (unsigned int i = 0; i < n_rows; i++) {
+
+
+ // calculate the value of the exponent for the individual
+ double v = gsl_vector_get(rhs, i);
+
+ // At this point, v is the value of the exponent
+
+ array<double, 4> v_arr = linkFunction(v);
+
+ // calculate LL for this ind and add to running total
+ LL -= 2 *(Y[i] * v_arr[2] + (1-Y[i]) * v_arr[3]);
+
+ // get the weight and update the rhs for IRLS
+ //weight[i] = v_arr[1];
+ gsl_vector_set(weight, i, v_arr[1] );
+ gsl_vector_set(rhs, i, v + 1/v_arr[1] * (Y[i] - v_arr[0]));
+
+ }
+
+ // Look, magic!
+ gsl_multifit_wlinear(&X.matrix, weight, rhs, &b.vector, cov, &tmp_chisq, ws);
+
+ // check for NaNs here
+ if(std::isfinite(gsl_blas_dasum(&b.vector))){
+ // get the difference between the old beta and the new beta
+ gsl_vector_sub(b_prev, &b.vector);
+ } else {
+ // terminate the iteration, giving us the previous beta
+ gsl_vector_memcpy(&b.vector, b_prev);
+ // and set the "difference" to 0
+ gsl_vector_set_zero(b_prev);
+ // set loglikelihood to NaN
+ LL = std::numeric_limits<double>::quiet_NaN();
+ }
+
+ LL += 0;
+
+ } // complete iteration
+
+
+
+
+ // nonconvergence happens if:
+ // -Log likelihood is not finite (inf or NaN)
+ // too many iteratons
+ // The current log likelihood is less than the null model
+ // a submodel did not converge
+ if(!std::isfinite(LL) ||
+ numIterations >= extra_data->maxIterations ||
+ LL-LLn > 0 ||
+ (r->submodel && !r->submodel->converged)){
+ r->converged = false;
+ }
+
+ // OK, now time to unpermute everything!
+ // Note: to unpermute, multiply by P transpose!
+ // Also, we need to unpermute both the rows AND columns of cov_mat
+ //b = gsl_vector_view_array(r->beta_vec, n_cols);
+ gsl_matrix* _cov_work = gsl_matrix_calloc(n_cols, n_cols);
+ // permute columns
+ gsl_blas_dgemm(CblasNoTrans, CblasTrans, 1.0, cov_mat, P, 0.0, _cov_work);
+ // permute rows
+ gsl_blas_dgemm(CblasTrans, CblasNoTrans, 1.0, P, _cov_work, 0.0, cov_mat);
+ gsl_matrix_free(_cov_work);
+
+ gsl_vector* _bv_work = gsl_vector_alloc(n_cols);
+ gsl_vector_memcpy(_bv_work, beta);
+ gsl_blas_dgemv(CblasTrans, 1.0, P, _bv_work, 0.0, beta);
+
+ // create a set of all of the removed indices
+ // I'm going to re-use _bv_work from earlier to save a few bytes of memory
+/* gsl_vector* idx_permu = gsl_vector_calloc(n_cols);
+ for(unsigned int i=0; i<n_cols; i++){
+ gsl_vector_set(_bv_work, i, i);
+ }
+ gsl_blas_dgemv(CblasNoTrans, 1.0, P, _bv_work, 0.0, idx_permu);
+ set<unsigned int> permu_idx_set(idx_permu->data + n_indep, idx_permu->data + n_cols);
+
+ gsl_vector_free(idx_permu);
+*/
+ gsl_vector_free(_bv_work);
+
+ unsigned int idx_offset = 1 + extra_data->base_covars;
+ for (unsigned int i = 0; i < n_cols - idx_offset; i++) {
+ double c = gsl_vector_get(beta, i + idx_offset);
+ double se = gsl_matrix_get(cov_mat, i + idx_offset, i + idx_offset);
+
+ if (se >= 0) {
+
+ r->coeffs[i] = extra_data->show_odds ? exp(c) : c;
+ r->stderr[i] = sqrt(se);
+
+ // use the wald statistic to get p-values for each coefficient
+ r->p_vals[i] = gsl_cdf_chisq_Q( pow( c / r->stderr[i] , 2) ,1 + (extra_data->encoding == Encoding::WEIGHTED));
+ } else {
+ // If this is true, this column was dropped from analysis!
+ r->coeffs[i] = std::numeric_limits<float>::quiet_NaN();
+ r->stderr[i] = std::numeric_limits<float>::quiet_NaN();
+ r->p_vals[i] = std::numeric_limits<float>::quiet_NaN();
+ }
+
+ }
+
+ r->df = findDF(P, reduced_vars, r->n_dropped, extra_data->extra_df_col, extra_data->n_extra_df_col);
+ r->log_likelihood = std::isfinite(LL) ? LL : -std::numeric_limits<float>::infinity();
+
+ Result* curr_res = r;
+
+ string extraSuff = "";
+
+ unsigned int df = 0;
+ while (curr_res) {
+ df += curr_res->df;
+ pair<float, float> pv_rsq = calcPVal(r, curr_res, df, LLn);
+
+ if (curr_res == r) {
+ r->p_val = r->converged ? pv_rsq.first : 1.0f;
+ r->r_squared = pv_rsq.second;
+ } else if (curr_res->n_vars > 0) {
+ extraSuff = boost::lexical_cast<string>(pv_rsq.first) + extra_data->sep;
+ break;
+ }
+
+ curr_res = curr_res->submodel;
+ }
+
+
+ r->suffix += extraSuff;
+
+ gsl_vector_free(weight);
+ gsl_vector_free(beta);
+ gsl_vector_free(b_prev);
+ gsl_vector_free(rhs);
+ gsl_matrix_free(cov_mat);
+ gsl_matrix_free(P);
+ gsl_multifit_linear_free(ws);
+ gsl_matrix_free(A);
+
+ return r;
+}
+
+void LogisticRegression::process(DataSet& ds){
+ runRegression(ds);
+}
+
+void LogisticRegression::printExtraHeader(std::ofstream& of){
+ of << "Converged" << sep;
+}
+
+string LogisticRegression::printExtraResults(const Result& r){
+ static bool warned=false;
+ if(!warned && !r.converged){
+ Logger::log_err("WARNING: One or more logistic regression models did not converge");
+ warned = true;
+ }
+ return boost::lexical_cast<string>(r.converged) + sep;
+}
+
+array<double, 4> LogisticRegression::linkFunction(double v){
+ // returns val, deriv (val * 1-val), log(val), 1-log(val)
+
+ array<double, 4> retval;
+ // max_val is the maximum value of v above that will not result in
+ // loss of precision. (with a factor of 2 in there for good luck)
+ static const double max_val = -log(numeric_limits<double>::epsilon());
+
+ if (v > max_val) {
+ retval[0] = 1;
+ retval[1] = exp(-v);
+ // log(f(x)) obtained by Taylor series expansion of log(x) at x=1
+ // note that f(x) - 1 = -exp(-x)/(1+exp(-x)) ~= -exp(-x)
+ // Also, that shows the log(1-f(x)) ~= exp(-x)
+ retval[2] = -exp(-v);
+ retval[3] = -v;
+ } else {
+ // we won't underflow here
+ retval[0] = 1 / (1 + exp(-v));
+ retval[2] = log(retval[0]);
+ // however, we might underflow when calculating derivatives and log
+ if (-v > max_val) {
+ // the traditional derivative WILL underflow
+ retval[1] = exp(v);
+ retval[3] = -exp(v);
+ } else {
+ retval[1] = retval[0] * (1 - retval[0]);
+ retval[3] = log(1 - retval[0]);
+ }
+ }
+ return retval;
+}
+
+pair<float, float> LogisticRegression::calcPVal(Result* r, Result* curr_res, unsigned int df, float null_ll){
+ pair<float, float> pv_rsq(1,1);
+ double LLn = null_ll;
+
+ if(curr_res->submodel){
+ LLn = curr_res->submodel->log_likelihood;
+ }
+
+ if (std::isfinite(r->log_likelihood) && r->log_likelihood-LLn <= 0){
+ if(df != 0){
+ pv_rsq.first = gsl_cdf_chisq_Q(fabs(LLn - r->log_likelihood), df);
+ }
+ }
+
+ return pv_rsq;
+
+}
+
+void LogisticRegression::calculate_MPI(unsigned int bufsz, const char* buf,
+ deque<pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv){
+ Regression::calculate_MPI(bufsz, buf, result_queue, result_mutex, cv, LogisticRegression::calculate);
+}
+
+}
+}
diff --git a/process/LogisticRegression.h b/process/LogisticRegression.h
new file mode 100644
index 0000000..ef5281d
--- /dev/null
+++ b/process/LogisticRegression.h
@@ -0,0 +1,101 @@
+#ifndef PROCESSLIB_LOGISTICREGRESSION_H
+#define PROCESSLIB_LOGISTICREGRESSION_H
+
+#include "Process.h"
+#include "analysis/Regression.h"
+#include "MPIProcess.h"
+
+#include <boost/array.hpp>
+#include <boost/archive/binary_iarchive.hpp>
+#include <boost/archive/binary_oarchive.hpp>
+#include <boost/archive/text_iarchive.hpp>
+#include <boost/archive/text_oarchive.hpp>
+#include <boost/serialization/serialization.hpp>
+
+#include <utility>
+
+namespace PLATO{
+namespace ProcessLib{
+
+class LogisticRegression : public ProcessImpl<LogisticRegression>,
+ public virtual Analysis::Regression, public MPIProcessImpl<LogisticRegression> {
+
+ friend class AutoRegression;
+
+private:
+ const static std::string stepname;
+ const static std::string MPIname;
+
+public:
+ LogisticRegression() : ProcessImpl<LogisticRegression>(stepname, "Run Logistic Regression"),
+ MPIProcessImpl<LogisticRegression>(MPIname), class_data(0) {};
+ virtual ~LogisticRegression(){if(class_data){delete class_data;}};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+ virtual boost::program_options::options_description getExtraOptions();
+
+ virtual calc_fn& getCalcFn() const;
+ virtual const Regression::ExtraData* getExtraData() const;
+
+ static Result* calculate(const double* Y, const double* data,
+ unsigned int n_cols, unsigned int n_rows, unsigned int offset,
+ unsigned int n_covars, bool run_null, const Regression::ExtraData* other_data);
+
+ virtual void printVarHeader(const std::string& var_name, std::ofstream& of) const;
+ virtual bool initData();
+
+ virtual void printExtraHeader(std::ofstream& of);
+ virtual std::string printExtraResults(const Result& r);
+
+private:
+ static boost::array<double, 4> linkFunction(double v);
+ static std::pair<float, float> calcPVal(Result* r, Result* submodel, unsigned int df, float null_ll);
+
+ template<class Archive>
+ static void* loadExtraData(const Archive& ar);
+
+public:
+ static void calculate_MPI(unsigned int bufsz, const char* buf,
+ std::deque<std::pair<unsigned int, const char*> >& result_queue, boost::mutex& result_mutex, boost::condition_variable& cv);
+
+private:
+ bool show_odds;
+ unsigned int maxIterations;
+
+public:
+ class ExtraData : public Regression::ExtraData {
+ public:
+ bool show_odds;
+ unsigned int maxIterations;
+
+ ExtraData(unsigned int n=0) : Regression::ExtraData(n) {}
+ ExtraData(const Regression::ExtraData& o) : Regression::ExtraData(o) {
+ const ExtraData* lo = dynamic_cast<const ExtraData*>(&o);
+ if(lo){
+ show_odds = lo->show_odds;
+ maxIterations = lo->maxIterations;
+ }
+ }
+ virtual ~ExtraData() {}
+
+ template<class Archive>
+ void serialize(Archive& ar, const unsigned int){
+ ar & boost::serialization::base_object<Regression::ExtraData>(*this);
+ ar & show_odds;
+ ar & maxIterations;
+ }
+ };
+
+private:
+ mutable ExtraData* class_data;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/MarkerMissingFilter.cpp b/process/MarkerMissingFilter.cpp
new file mode 100644
index 0000000..00710b1
--- /dev/null
+++ b/process/MarkerMissingFilter.cpp
@@ -0,0 +1,62 @@
+#include "MarkerMissingFilter.h" //////CHANGE TO REAL MODULE NAME
+
+#include "data/DataSet.h"
+#include "data/Marker.h"
+
+#include "util/Logger.h"
+#include "util/Missing.h"
+
+#include <boost/lexical_cast.hpp>
+
+using std::string;
+
+using PLATO::Data::DataSet;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string MarkerMissingFilter::stepname = MarkerMissingFilter::doRegister("filter-marker-call");
+
+//PrintSummary()
+//used to output results after processing the data
+void MarkerMissingFilter::PrintSummary(){
+ //output for process goes here
+ //
+ Utility::Logger::log("Marker Call Filter: Dropped " + boost::lexical_cast<string>(_n_filtered) + " Markers.\n");
+}
+
+//process()
+//main method to get the process going and to the work
+void MarkerMissingFilter::process(DataSet& ds){
+
+ _n_filtered = 0;
+ DataSet::marker_iterator mi = ds.beginMarker();
+ while(mi != ds.endMarker()){
+ if(1 - Utility::Missing::markerMissing(ds, **mi) < _thresh){
+ (*mi)->setEnabled(false);
+ }
+ ++_n_filtered;
+
+ ++mi;
+ }
+}
+
+po::options_description& MarkerMissingFilter::appendOptions(po::options_description& opts){
+ po::options_description subopts("Sample Call Rate Options");
+
+ subopts.add_options()
+ ("threshold", po::value<double>(&_thresh)->default_value(0.99, "0.99"),"Drop all markers with a call rate below this threshold")
+ ;
+
+ opts.add(subopts);
+ return opts;
+}
+
+void MarkerMissingFilter::parseOptions(const po::variables_map& vm){
+ // no need to do anything here!
+}
+
+}
+}
diff --git a/process/MarkerMissingFilter.h b/process/MarkerMissingFilter.h
new file mode 100644
index 0000000..6cafe6c
--- /dev/null
+++ b/process/MarkerMissingFilter.h
@@ -0,0 +1,37 @@
+#ifndef PROCESSLIB_MARKERMISSING_FILTER_H //change to actual process name
+#define PROCESSLIB_MARKERMISSING_FILTER_H //change to actual process name
+
+#include <string>
+
+#include "Process.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class MarkerMissingFilter : public ProcessImpl<MarkerMissingFilter>{
+private:
+ const static std::string stepname;
+
+public:
+ MarkerMissingFilter() : ProcessImpl<MarkerMissingFilter>(stepname, "Filter the dataset based on marker call rate") {};
+ virtual ~MarkerMissingFilter(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void PrintSummary();
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+
+ double _thresh;
+ int _n_filtered;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/OutputBED.cpp b/process/OutputBED.cpp
new file mode 100644
index 0000000..7f2ae7a
--- /dev/null
+++ b/process/OutputBED.cpp
@@ -0,0 +1,192 @@
+/*
+ * OutputBED.cpp
+ *
+ * Created on: Dec 3, 2013
+ * Author: jrw32
+ */
+
+#include "OutputBED.h"
+
+#include <fstream>
+
+#include "data/DataSet.h"
+#include "data/Sample.h"
+#include "data/Marker.h"
+
+namespace po=boost::program_options;
+
+using std::string;
+using std::ofstream;
+
+using PLATO::Data::DataSet;
+using PLATO::Data::Sample;
+using PLATO::Data::Marker;
+
+namespace PLATO{
+namespace ProcessLib {
+
+const string OutputBED::stepname = OutputBED::doRegister("output-bed");
+
+po::options_description& OutputBED::appendOptions(po::options_description& opts){
+ po::options_description bed_opts("Binary PED output options");
+
+ bed_opts.add_options()
+ ("file,f", po::value<string>(&base_fn)->default_value("plato"), "Base filename for BED/BIM/FAM files")
+ ("bed", po::value<string>(&bed_fn), "Filename for BED file")
+ ("bim", po::value<string>(&bim_fn), "Filename for BIM file")
+ ("fam", po::value<string>(&fam_fn), "Filename for FAM file")
+ ("individual-major", po::bool_switch(&_ind_major), "Output BED in individual-major mode");
+
+ return opts.add(bed_opts);
+}
+
+void OutputBED::parseOptions(const po::variables_map& vm){
+ if(bed_fn.size() == 0){
+ bed_fn = base_fn + ".bed";
+ }
+
+ if(bim_fn.size() == 0){
+ bim_fn = base_fn + ".bim";
+ }
+
+ if(fam_fn.size() == 0){
+ fam_fn = base_fn + ".fam";
+ }
+}
+
+void OutputBED::process(DataSet& ds){
+
+ ofstream bed_f(bed_fn.c_str(), std::ios::out | std::ios::binary);
+ ofstream bim_f(bim_fn.c_str());
+ ofstream fam_f(fam_fn.c_str());
+
+ if(!(bed_f.good() && bim_f.good() && fam_f.good())){
+ throw std::logic_error("Could not open BED/BIM/FAM files");
+ }
+
+ // Let's print the bim file first
+ DataSet::const_marker_iterator m_itr = ds.beginMarker();
+ DataSet::const_marker_iterator m_end = ds.endMarker();
+
+ while(m_itr != m_end){
+ printMAPInfo(bim_f, **m_itr, true);
+ bim_f << std::endl;
+ ++m_itr;
+ }
+
+ bim_f.close();
+
+ // Now, for the fam file
+ DataSet::const_sample_iterator s_itr = ds.beginSample();
+ DataSet::const_sample_iterator s_end = ds.endSample();
+ while(s_itr != s_end){
+ printPEDHeader(fam_f, **s_itr);
+ fam_f << std::endl;
+ ++s_itr;
+ }
+
+ fam_f.close();
+
+ // yech! now for the BED file
+
+ // We'll constantly use this unsigned char and write a byte at a time
+ char ch = 0;
+
+ //First, print the magic number
+ ch = 108;
+ bed_f.write(&ch, 1);
+ ch = 27;
+ bed_f.write(&ch, 1);
+
+ // Now, are we individual-major or snp-major?
+ ch = !_ind_major;
+ bed_f.write(&ch, 1);
+
+ ch = 0;
+
+ if(_ind_major){
+ s_itr = ds.beginSample();
+ while(s_itr != s_end){
+
+ unsigned int n_mark=4;
+ m_itr = ds.beginMarker();
+
+ while(m_itr != m_end){
+
+ ch |= (getBinaryGeno(**s_itr, **m_itr) << ((4 - n_mark)*2)) ;
+
+ if(--n_mark == 0){
+ bed_f.write(&ch, 1);
+ ch = 0;
+ n_mark = 4;
+ }
+
+ ++m_itr;
+ }
+
+ if(n_mark != 4){
+ bed_f.write(&ch, 1);
+ }
+
+ ++s_itr;
+ }
+ } else {
+
+ m_itr = ds.beginMarker();
+ while (m_itr != m_end) {
+
+ unsigned int n_samp = 4;
+ s_itr = ds.beginSample();
+ while (s_itr != s_end) {
+
+ ch |= (getBinaryGeno(**s_itr, **m_itr) << ((4 - n_samp)*2)) ;
+
+ if (--n_samp == 0) {
+ bed_f.write(&ch, 1);
+ // probably unnecessary, but I like it
+ ch = 0;
+ n_samp = 4;
+ }
+
+ ++s_itr;
+ }
+
+ if (n_samp != 4) {
+ bed_f.write(&ch, 1);
+ }
+
+ ++m_itr;
+ }
+ }
+
+ bed_f.close();
+
+}
+
+unsigned char OutputBED::getBinaryGeno(const Sample& s, const Marker& m) const {
+
+ unsigned char g_char = s.getAdditiveGeno(m);
+
+ switch(g_char){
+ case 0:
+ // homozygous referent (00)
+ g_char = 0;
+ break;
+ case 1:
+ // heterozygous (10)
+ g_char = 2;
+ break;
+ case 2:
+ // homozygous alternate (11)
+ g_char = 3;
+ break;
+ default:
+ // missing (01)
+ g_char = 1;
+ }
+
+ return g_char;
+}
+
+}
+}
diff --git a/process/OutputBED.h b/process/OutputBED.h
new file mode 100644
index 0000000..8d65969
--- /dev/null
+++ b/process/OutputBED.h
@@ -0,0 +1,47 @@
+/*
+ * OutputBED.h
+ *
+ * Created on: Dec 3, 2013
+ * Author: jrw32
+ */
+
+#ifndef PROCESSLIB_OUTPUTBED_H
+#define PROCESSLIB_OUTPUTBED_H
+
+#include "Process.h"
+#include "util/OutputPLINK.h"
+
+namespace PLATO{
+namespace ProcessLib {
+
+class OutputBED : public ProcessImpl<OutputBED>, private Utility::OutputPLINK {
+private:
+ const static std::string stepname;
+
+public:
+ OutputBED() : ProcessImpl<OutputBED>(stepname, "Output dataset in BED/BIM/FAM format"){}
+ virtual ~OutputBED() {}
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+
+ unsigned char getBinaryGeno(const Data::Sample& s, const Data::Marker& m) const;
+
+private:
+ std::string base_fn;
+ std::string bed_fn;
+ std::string bim_fn;
+ std::string fam_fn;
+
+ bool _ind_major;
+};
+
+}
+}
+
+#endif /* OUTPUTBED_H_ */
diff --git a/process/OutputBeagle.cpp b/process/OutputBeagle.cpp
new file mode 100644
index 0000000..3b2d4bd
--- /dev/null
+++ b/process/OutputBeagle.cpp
@@ -0,0 +1,200 @@
+#include "OutputBeagle.h" //////CHANGE TO REAL MODULE NAME
+
+#include "util/Logger.h"
+
+#include <fstream>
+
+using std::string;
+using std::ofstream;
+using std::endl;
+
+using PLATO::Data::DataSet;
+using PLATO::Data::Family;
+using PLATO::Data::Sample;
+using PLATO::Utility::Logger;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string OutputBeagle::stepname = OutputBeagle::doRegister("output-beagle");
+
+po::options_description& OutputBeagle::appendOptions(po::options_description& opts){
+ po::options_description subopts("BEAGLE Output Options");
+
+ subopts.add_options()
+ ("prefix", po::value<string>(&_prefix)->default_value("output"), "Prefix for output data")
+ ("suffix", po::value<string>(&_suffix)->default_value("bgl"), "Suffix for genotype data")
+ ("marker-suffix", po::value<string>(&_marker_suff)->default_value("markers"), "Suffix for marker data")
+ ("incl-traits", po::bool_switch(&_incl_trait), "Include traits in the genotype output data")
+ ("pair", po::bool_switch(&_pair), "Data to output is pair data")
+ ("trio", po::bool_switch(&_trio), "Data to output is trio data")
+ ("missing", po::value<string>(&_miss_val)->default_value("0"), "Character to print for missing data")
+ ;
+
+ opts.add(subopts);
+ return opts;
+}
+
+void OutputBeagle::parseOptions(const po::variables_map& vm){
+
+ if(_pair && _trio){
+ Logger::log_err("ERROR: Data cannot be both pair and trio data", true);
+ }
+
+}
+
+
+//process()
+//main method to get the process going and to the work
+void OutputBeagle::process(DataSet& ds){
+ //main processing of step goes here.
+
+ // make sure the markers are sorted
+ ds.sortMarkers();
+ string prevChr = "";
+
+ DataSet::const_marker_iterator mi = ds.beginMarker();
+ SampleGenerator* sg = getSampleGenerator(ds);
+ const Sample* s = 0;
+ ofstream genof;
+ ofstream markerf;
+
+ while(mi != ds.endMarker()){
+ if((*mi)->getChromStr() != prevChr){
+ prevChr = (*mi)->getChromStr();
+ if(genof){
+ genof.close();
+ }
+ if(markerf){
+ markerf.close();
+ }
+ genof.open((_prefix + "." + prevChr + "." + _suffix).c_str());
+ markerf.open((_prefix + "." + prevChr + "." + _marker_suff).c_str());
+
+ genof << "I" << _sep << "id";
+
+ sg->reset();
+ while( (s = sg->next()) != 0){
+ genof << _sep << s->getID() << _sep << s->getID();
+ }
+ genof << endl;
+
+ if(_incl_trait){
+ genof << "A" << _sep << "status";
+ sg->reset();
+ while( (s = sg->next()) != 0){
+ for(unsigned int i=0; i<2; i++){
+ genof << _sep << s->isAffectedKnown() * (s->isAffected() + 1);
+ }
+ }
+ genof << endl;
+
+ DataSet::const_trait_iterator ti = ds.beginTrait();
+ while(ti != ds.endTrait()){
+ genof << "T" << _sep << *ti;
+ sg->reset();
+ while( (s = sg->next()) != 0){
+ for(unsigned int i=0; i<2; i++){
+ genof << _sep << ds.getTrait(*ti, s);
+ }
+ }
+ genof << endl;
+ ++ti;
+ }
+ }
+ }
+
+ markerf << (*mi)->getID() << _sep << (*mi)->getLoc();
+ for(unsigned int i=0; i<(*mi)->getNumAlleles(); i++){
+ markerf << _sep << (*mi)->getAllele(i);
+ }
+ markerf << endl;
+
+ genof << "M" << _sep << (*mi)->getID();
+
+ sg->reset();
+ while( (s = sg->next()) != 0){
+ std::pair<unsigned char, unsigned char> geno = s->getGeno(**mi);
+ genof << _sep << (geno.first == Sample::missing_allele ?
+ _miss_val : (*mi)->getAllele(geno.first))
+ << _sep << (geno.second == Sample::missing_allele ?
+ _miss_val : (*mi)->getAllele(geno.second));
+ }
+ genof << endl;
+
+ ++mi;
+ }
+
+ genof.close();
+ markerf.close();
+ delete sg;
+
+}
+
+OutputBeagle::SampleGenerator* OutputBeagle::getSampleGenerator(const DataSet& ds){
+ if(_trio || _pair){
+ return new FamilySampleGenerator(ds, 1 + _trio);
+ } else {
+ return new BasicSampleGenerator(ds);
+ }
+}
+
+OutputBeagle::FamilySampleGenerator::FamilySampleGenerator(const DataSet& ds, unsigned int n_found)
+ : OutputBeagle::SampleGenerator(ds), _FOUNDERS(n_found), _curr_founder(0), _fi(ds.beginFamily()) {
+
+ // let's check to make sure everything is as it should be!
+ while(_fi != ds.endFamily()){
+ Family::const_member_iterator fmi = (*_fi)->beginMembers(false);
+
+ _curr_founder = 0;
+ while(_curr_founder < _FOUNDERS){
+ ++_curr_founder;
+ if(fmi == (*_fi)->endMembers()){
+ Logger::log_err("ERROR: Not enough founders found in family '"+ (*_fi)->getFamID() + "'", true);
+ }
+ ++fmi;
+ }
+
+ fmi = (*_fi)->beginMembers(false);
+ Sample::const_child_iterator ci = (*fmi)->beginChild();
+ unsigned int n_kids = 0;
+ while(ci != (*fmi)->endChild()){
+ ++n_kids;
+ ++ci;
+ }
+ if(n_kids != 1){
+ Logger::log_err("WARNING: Multiple children found in family '" + (*_fi)->getFamID() + "', taking only the first child.");
+ }
+
+ ++_fi;
+ }
+
+ _fi = ds.beginFamily();
+ _curr_founder = 0;
+
+}
+
+const Sample* OutputBeagle::FamilySampleGenerator::next(){
+ const Sample* toret = 0;
+
+ if(_curr_founder == _FOUNDERS){
+ toret = *((*((*_fi)->beginMembers(false)))->beginChild());
+ _curr_founder = 0;
+ ++_fi;
+ } else if(_fi == _ds.endFamily()) {
+ Family::const_member_iterator fmi = (*_fi)->beginMembers(false);
+ for(unsigned int i=0; i<_curr_founder; i++){
+ ++fmi;
+ }
+ toret = (*fmi);
+ ++_curr_founder;
+ }
+
+ return toret;
+}
+
+
+}
+}
diff --git a/process/OutputBeagle.h b/process/OutputBeagle.h
new file mode 100644
index 0000000..a3e38d6
--- /dev/null
+++ b/process/OutputBeagle.h
@@ -0,0 +1,95 @@
+#ifndef PROCESSLIB_OUTPUTBEAGLE_H
+#define PROCESSLIB_OUTPUTBEAGLE_H
+
+#include <string>
+
+#include "Process.h"
+
+#include "data/DataSet.h"
+#include "data/Family.h"
+
+namespace PLATO{
+
+namespace ProcessLib{
+
+class OutputBeagle : public ProcessImpl<OutputBeagle>{
+private:
+ const static std::string stepname;
+
+ /*! A sample generator that will iterate over the samples in the correct
+ * order (pair / trio data as appropriate)
+ *
+ */
+ class SampleGenerator{
+
+ public:
+ SampleGenerator(const Data::DataSet& ds) : _ds(ds) {}
+ virtual ~SampleGenerator() {}
+ virtual const Data::Sample* next() = 0;
+ virtual void reset() = 0;
+
+ protected:
+ const Data::DataSet& _ds;
+ };
+
+ class BasicSampleGenerator : public SampleGenerator{
+ public:
+ BasicSampleGenerator(const Data::DataSet& ds) : SampleGenerator(ds), _si(ds.beginSample()) {}
+ virtual ~BasicSampleGenerator() {}
+
+ virtual const Data::Sample* next() { return (_si == _ds.endSample()) ? 0 : (*(_si++));}
+ virtual void reset() { _si = _ds.beginSample();}
+
+ private:
+ Data::DataSet::const_sample_iterator _si;
+ };
+
+ class FamilySampleGenerator : public SampleGenerator{
+ public:
+ FamilySampleGenerator(const Data::DataSet& ds, unsigned int n_found);
+ virtual ~FamilySampleGenerator() {}
+
+ virtual const Data::Sample* next();
+ virtual void reset() {_fi = _ds.beginFamily(); _curr_founder = 0;}
+
+ private:
+ const unsigned int _FOUNDERS;
+ // This is the current founder (if == _FOUNDERS, we're on children!)
+ unsigned int _curr_founder;
+
+ Data::DataSet::const_family_iterator _fi;
+
+
+ };
+
+public:
+ OutputBeagle() : ProcessImpl<OutputBeagle>(stepname, "Example Command - please remove in released version"), _sep("\t") {};
+ virtual ~OutputBeagle(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ SampleGenerator* getSampleGenerator(const Data::DataSet& ds);
+
+private:
+ std::string _prefix;
+ std::string _suffix;
+ std::string _marker_suff;
+ std::string _sep;
+ std::string _miss_val;
+ bool _incl_trait;
+ bool _pair;
+ bool _trio;
+
+
+};
+
+}
+}
+
+#endif
diff --git a/process/OutputEigenstrat.cpp b/process/OutputEigenstrat.cpp
new file mode 100644
index 0000000..c86972e
--- /dev/null
+++ b/process/OutputEigenstrat.cpp
@@ -0,0 +1,102 @@
+#include "OutputEigenstrat.h"
+
+#include "data/DataSet.h"
+
+#include <fstream>
+
+using std::string;
+using std::ofstream;
+
+using PLATO::Data::DataSet;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string OutputEigenstrat::stepname = OutputEigenstrat::doRegister("output-eigenstrat");
+
+//PrintSummary()
+//used to output results after processing the data
+void OutputEigenstrat::PrintSummary(){
+ //output for process goes here
+ //
+
+}
+
+//process()
+//main method to get the process going and to the work
+void OutputEigenstrat::process(DataSet& ds){
+ //main processing of step goes here.
+
+ const static string sep = "\t";
+
+ // print out the marker (snp) file
+ ofstream snp_f(_snp_fn.c_str());
+ DataSet::const_marker_iterator mi = ds.beginMarker();
+ DataSet::const_marker_iterator me = ds.endMarker();
+ while(mi != me){
+ snp_f << (*mi)->getID() << sep << (*mi)->getChrom() << sep
+ << 0 << sep << (*mi)->getLoc() << std::endl;
+ ++mi;
+ }
+ snp_f.close();
+
+ // print out the individual file
+ ofstream indiv_f(_indiv_fn.c_str());
+ DataSet::const_sample_iterator si = ds.beginSample();
+ DataSet::const_sample_iterator se = ds.endSample();
+ while(si != se){
+ indiv_f << (*si)->getID() << sep
+ << ((*si)->isGenderKnown() ? ((*si)->isMale() ? "M" : "F") : "U") << sep
+ << ((*si)->isAffectedKnown() * ((*si)->isAffected() + 1)) << std::endl;
+ ++si;
+ }
+ indiv_f.close();
+
+ // print out the genotype file
+ ofstream geno_f(_geno_fn.c_str());
+ mi = ds.beginMarker();
+ while(mi != me){
+ si = ds.beginSample();
+ while(si != se){
+ geno_f << ((*si)->isMissing(**mi) ? missing_val : (*si)->getAdditiveGeno(**mi));
+ ++si;
+ }
+ geno_f << std::endl;
+ ++mi;
+ }
+ geno_f.close();
+
+}
+
+po::options_description& OutputEigenstrat::appendOptions(po::options_description& opts){
+ po::options_description subopts("Eigenstrat Output Options");
+
+ subopts.add_options()
+ ("prefix", po::value<string>(&_prefix)->default_value("plato"), "Prefix for output filenames")
+ ("genotype", po::value<string>(&_geno_fn),"Genotype file name")
+ ("snp", po::value<string>(&_snp_fn),"SNP file name")
+ ("indiv", po::value<string>(&_indiv_fn),"Individual file name")
+ ;
+
+ opts.add(subopts);
+ return opts;
+}
+
+void OutputEigenstrat::parseOptions(const po::variables_map& vm){
+ if(!vm.count("genotype")){
+ _geno_fn = _prefix + ".geno";
+ }
+
+ if(!vm.count("snp")){
+ _snp_fn = _prefix + ".snp";
+ }
+
+ if(!vm.count("indiv")){
+ _indiv_fn = _prefix + ".indiv";
+ }
+}
+
+}
+}
diff --git a/process/OutputEigenstrat.h b/process/OutputEigenstrat.h
new file mode 100644
index 0000000..7bd9909
--- /dev/null
+++ b/process/OutputEigenstrat.h
@@ -0,0 +1,40 @@
+#ifndef PROCESSLIB_OUTPUTEIGENSTRAT_H
+#define PROCESSLIB_OUTPUTEIGENSTRAT_H
+
+#include <string>
+
+#include "Process.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class OutputEigenstrat : public ProcessImpl<OutputEigenstrat>{
+private:
+ const static std::string stepname;
+
+ const static unsigned int missing_val = 9;
+
+public:
+ OutputEigenstrat() : ProcessImpl<OutputEigenstrat>(stepname, "Output in Eigenstrat format") {};
+ virtual ~OutputEigenstrat(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void PrintSummary();
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ std::string _prefix;
+ std::string _geno_fn;
+ std::string _snp_fn;
+ std::string _indiv_fn;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/OutputPED.cpp b/process/OutputPED.cpp
new file mode 100644
index 0000000..e59828a
--- /dev/null
+++ b/process/OutputPED.cpp
@@ -0,0 +1,105 @@
+/*
+ * OutputPED.cpp
+ *
+ * Created on: Nov 27, 2013
+ * Author: jrw32
+ */
+
+#include "OutputPED.h"
+
+#include <fstream>
+
+#include "data/DataSet.h"
+#include "data/Sample.h"
+#include "data/Marker.h"
+
+#include "util/InputManager.h"
+#include "util/Logger.h"
+
+namespace po=boost::program_options;
+
+using PLATO::Data::DataSet;
+using PLATO::Data::Sample;
+using PLATO::Data::Marker;
+using PLATO::Utility::InputManager;
+using PLATO::Utility::Logger;
+
+using std::string;
+using std::ofstream;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string OutputPED::stepname = OutputPED::doRegister("output-ped");
+
+po::options_description& OutputPED::appendOptions(po::options_description& opts){
+ po::options_description ped_opts("PED Outuput Options");
+
+ ped_opts.add_options()
+ ("file,f", po::value<string>(&base_fn)->default_value("plato"), "Base fileneme for ped and map files")
+ ("ped", po::value<string>(&ped_fn), "Filename of PED file")
+ ("map", po::value<string>(&map_fn), "Filename of MAP file");
+
+ return opts.add(ped_opts);
+}
+
+void OutputPED::parseOptions(const po::variables_map& vm){
+ if(ped_fn.size() == 0){
+ ped_fn = base_fn + ".ped";
+ }
+
+ if(map_fn.size() == 0){
+ map_fn = base_fn + ".map";
+ }
+}
+
+void OutputPED::process(DataSet& ds){
+
+ ofstream ped_f(ped_fn.c_str());
+ ofstream map_f(map_fn.c_str());
+
+ if(!ped_f.good() || !map_f.good()){
+ Logger::log_err("Unable to open PED/MAP file(s)", true);
+ }
+
+ // Let's print the map file first
+ DataSet::const_marker_iterator m_itr = ds.beginMarker();
+ DataSet::const_marker_iterator m_end = ds.endMarker();
+
+ while(m_itr != m_end){
+ printMAPInfo(map_f, **m_itr, false);
+ map_f << std::endl;
+ ++m_itr;
+ }
+
+ map_f.close();
+
+ // OK, now time to print out the PED file
+ DataSet::const_sample_iterator s_itr = ds.beginSample();
+ DataSet::const_sample_iterator s_end = ds.endSample();
+ while(s_itr != s_end){
+ printPEDHeader(ped_f, **s_itr);
+
+ DataSet::const_marker_iterator ms_itr = ds.beginMarker();
+ std::pair<unsigned char, unsigned char> geno;
+ while(ms_itr != m_end){
+ if((*s_itr)->isMissing(**ms_itr)){
+ ped_f << "\t0\t0";
+ } else {
+ geno = (*s_itr)->getGeno(**ms_itr);
+ ped_f << "\t" << (*ms_itr)->getAllele(geno.first)
+ << "\t" << (*ms_itr)->getAllele(geno.second);
+ }
+ ++ms_itr;
+ }
+
+ ped_f << std::endl;
+ ++s_itr;
+ }
+
+ ped_f.close();
+
+}
+
+}
+}
diff --git a/process/OutputPED.h b/process/OutputPED.h
new file mode 100644
index 0000000..1274ad4
--- /dev/null
+++ b/process/OutputPED.h
@@ -0,0 +1,40 @@
+/*
+ * OutputPED.h
+ *
+ * Created on: Nov 27, 2013
+ * Author: jrw32
+ */
+
+#ifndef PROCESSLIB_OUTPUTPED_H
+#define PROCESSLIB_OUTPUTPED_H
+
+#include "Process.h"
+#include "util/OutputPLINK.h"
+
+namespace PLATO{
+namespace ProcessLib {
+
+class OutputPED : public ProcessImpl<OutputPED>, private Utility::OutputPLINK {
+private:
+ const static std::string stepname;
+
+public:
+ OutputPED() : ProcessImpl<OutputPED>(stepname, "Output dataset in PED/MAP format"){}
+ virtual ~OutputPED() {}
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ std::string base_fn;
+ std::string ped_fn;
+ std::string map_fn;
+};
+
+}
+}
+
+#endif /* OUTPUTPED_H_ */
diff --git a/process/OutputTPED.cpp b/process/OutputTPED.cpp
new file mode 100644
index 0000000..0084afa
--- /dev/null
+++ b/process/OutputTPED.cpp
@@ -0,0 +1,106 @@
+/*
+ * OutputPED.cpp
+ *
+ * Created on: Nov 27, 2013
+ * Author: jrw32
+ */
+
+#include "OutputTPED.h"
+
+#include <fstream>
+
+#include "data/DataSet.h"
+#include "data/Sample.h"
+#include "data/Marker.h"
+
+#include "util/InputManager.h"
+
+namespace po=boost::program_options;
+
+using PLATO::Data::DataSet;
+using PLATO::Data::Sample;
+using PLATO::Data::Marker;
+using PLATO::Utility::InputManager;
+
+using std::string;
+using std::ofstream;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string OutputTPED::stepname = OutputTPED::doRegister("output-tped");
+
+po::options_description& OutputTPED::appendOptions(po::options_description& opts){
+ po::options_description ped_opts("TPED Output Options");
+
+ ped_opts.add_options()
+ ("file,f", po::value<string>(&base_fn)->default_value("plato"), "Base fileneme for transposed ped and map files")
+ ("tped", po::value<string>(&tped_fn), "Filename of TPED file")
+ ("tfam", po::value<string>(&tfam_fn), "Filename of TFAM file");
+
+ return opts.add(ped_opts);
+}
+
+void OutputTPED::parseOptions(const po::variables_map& vm){
+ if(tped_fn.size() == 0){
+ tped_fn = base_fn + ".tped";
+ }
+
+ if(tfam_fn.size() == 0){
+ tfam_fn = base_fn + ".tfam";
+ }
+}
+
+void OutputTPED::process(DataSet& ds){
+
+ ofstream tped_f(tped_fn.c_str());
+ ofstream tfam_f(tfam_fn.c_str());
+
+ if(!tped_f.good() || !tfam_f.good()){
+ throw std::logic_error("Unable to open TPED/TFAM file(s)");
+ }
+
+ // Print the TFAM file first
+ DataSet::const_sample_iterator s_itr = ds.beginSample();
+ DataSet::const_sample_iterator s_end = ds.endSample();
+ while(s_itr != s_end){
+ printPEDHeader(tfam_f, **s_itr);
+ tfam_f << std::endl;
+ ++s_itr;
+ }
+
+ tfam_f.close();
+
+ // OK, now for the TPED file
+ DataSet::const_marker_iterator m_itr = ds.beginMarker();
+ DataSet::const_marker_iterator m_end = ds.endMarker();
+
+ while(m_itr != m_end){
+
+ DataSet::const_sample_iterator sm_itr = ds.beginSample();
+ std::pair<unsigned char, unsigned char> geno;
+
+ printMAPInfo(tped_f, **m_itr, false);
+
+ while(sm_itr != s_end){
+ if((*sm_itr)->isMissing(**m_itr)){
+ tped_f << "\t0\t0";
+ } else {
+ geno = (*sm_itr)->getGeno(**m_itr);
+ tped_f << "\t" << (*m_itr)->getAllele(geno.first)
+ << "\t" << (*m_itr)->getAllele(geno.second);
+ }
+ ++sm_itr;
+ }
+
+ tped_f << std::endl;
+
+ ++m_itr;
+ }
+
+ tped_f.close();
+
+}
+
+}
+}
diff --git a/process/OutputTPED.h b/process/OutputTPED.h
new file mode 100644
index 0000000..cd6b86f
--- /dev/null
+++ b/process/OutputTPED.h
@@ -0,0 +1,40 @@
+/*
+ * OutputPED.h
+ *
+ * Created on: Nov 27, 2013
+ * Author: jrw32
+ */
+
+#ifndef PROCESSLIB_OUTPUTPED_H
+#define PROCESSLIB_OUTPUTPED_H
+
+#include "Process.h"
+#include "util/OutputPLINK.h"
+
+namespace PLATO{
+namespace ProcessLib {
+
+class OutputTPED : public ProcessImpl<OutputTPED>, private Utility::OutputPLINK {
+private:
+ const static std::string stepname;
+
+public:
+ OutputTPED() : ProcessImpl<OutputTPED>(stepname, "Output dataset in transposed PED/MAP format"){}
+ virtual ~OutputTPED() {}
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ std::string base_fn;
+ std::string tped_fn;
+ std::string tfam_fn;
+};
+
+}
+}
+
+#endif /* OUTPUTPED_H_ */
diff --git a/process/RecodeAlleles.cpp b/process/RecodeAlleles.cpp
new file mode 100644
index 0000000..09ef59f
--- /dev/null
+++ b/process/RecodeAlleles.cpp
@@ -0,0 +1,143 @@
+#include "RecodeAlleles.h" //////CHANGE TO REAL MODULE NAME
+
+#include "data/DataSet.h"
+
+#include "util/Logger.h"
+
+#include <fstream>
+#include <sstream>
+#include <iostream>
+#include <cstdlib>
+
+#include <boost/algorithm/string.hpp>
+
+using std::ifstream;
+using std::ofstream;
+using std::stringstream;
+using std::string;
+
+using PLATO::Data::DataSet;
+using PLATO::Data::Marker;
+using PLATO::Utility::Logger;
+
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string RecodeAlleles::stepname = RecodeAlleles::doRegister("recode-alleles");
+
+//PrintSummary()
+//used to output results after processing the data
+void RecodeAlleles::PrintSummary(){
+ //output for process goes here
+}
+
+po::options_description& RecodeAlleles::appendOptions(po::options_description& opts){
+ po::options_description subopts("Example Options");
+
+ subopts.add_options()
+ ("file", po::value<string>(&recode_fn),"File of markers and given referent allele")
+ ("input-map", po::bool_switch(&map_input), "Input file of markers is in (extended) map format")
+ ("map3", po::bool_switch(&map3), "Use 3-column map format for input and output")
+ ("auto", po::bool_switch(&auto_recode), "Automatically make the referent allele the major allele")
+ ("out", po::value<string>(&out_fn), "Output a file of markers along with their referent allele")
+ ("output-map", po::bool_switch(&map_output), "Print output in (extended) map format")
+ ;
+
+ opts.add(subopts);
+ return opts;
+}
+
+void RecodeAlleles::parseOptions(const po::variables_map& vm){
+ if(auto_recode && recode_fn.size() > 0){
+ Logger::log_err("WARNING: --file and --auto options both specified: --file will take precedence");
+ }
+
+ if(map_input && recode_fn.size() == 0){
+ Logger::log_err("WARNING: --input-map given without a --file option: ignoring --input-map option");
+ map_input = false;
+ }
+
+ if(map_output && out_fn.size() == 0){
+ Logger::log_err("WARNING: --output-map given without a --out option: ignoring --output-map");
+ }
+
+ if(map3 && !(map_input || map_output)){
+ Logger::log_err("WARNING: --map3 given without --map-input or --map-output: ignoring --map3");
+ }
+}
+
+//process()
+//main method to get the process going and to the work
+void RecodeAlleles::process(DataSet& ds){
+ if(auto_recode){
+ DataSet::marker_iterator mi = ds.beginMarker();
+ while(mi != ds.endMarker()){
+ (*mi)->setRefAlleleIdx((*mi)->majorAlleleIdx(ds));
+ ++mi;
+ }
+ }
+
+ if(recode_fn != ""){
+ ifstream rf(recode_fn.c_str());
+ string l;
+ while(getline(rf, l)){
+ boost::algorithm::trim(l);
+ if(l.size() > 0 && l[0] != '#'){
+ stringstream ss(l);
+ string chr, pos, id, ref;
+ if(map_input){
+ ss >> chr;
+ }
+ ss >> id;
+ if(map_input){
+ ss >> pos;
+ if(!map3){
+ // I'm just going to overwrite this, so no worries
+ // about creating a temp. variable here
+ ss >> ref;
+ }
+ }
+ ss >> ref;
+ Marker* m = ds.getMarker(id);
+ if(!m && map_input){
+ m = ds.getMarker(chr, atoi(pos.c_str()));
+ }
+ if(!m){
+ Logger::log_err("WARNING: could not find marker with ID: '" + id + "'");
+ } else if (!m->setRefAllele(ref)) {
+ Logger::log_err("WARNING: could not set reference allele '" + ref + "' for marker '" + id + "'");
+ }
+ }
+ }
+
+ rf.close();
+ }
+
+ if(out_fn != ""){
+ ofstream outf(out_fn.c_str());
+ DataSet::const_marker_iterator cmi = ds.beginMarker();
+ while(cmi != ds.endMarker()){
+
+ if(map_output){
+ outf << (*cmi)->getChromStr() << "\t";
+ }
+ outf << (*cmi)->getID() << "\t";
+ if(map_output){
+ outf << (*cmi)->getLoc() << "\t";
+ if(!map3){
+ outf << "0\t";
+ }
+ }
+ outf << (*cmi)->getRefAllele() << std::endl;
+
+ }
+
+ outf.close();
+ }
+}
+
+}
+}
diff --git a/process/RecodeAlleles.h b/process/RecodeAlleles.h
new file mode 100644
index 0000000..2ec838c
--- /dev/null
+++ b/process/RecodeAlleles.h
@@ -0,0 +1,40 @@
+#ifndef PROCESSLIB_RECODEALLELES_H //change to actual process name
+#define PROCESSLIB_RECODEALLELES_H //change to actual process name
+
+#include <string>
+
+#include "Process.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class RecodeAlleles : public ProcessImpl<RecodeAlleles>{
+private:
+ const static std::string stepname;
+
+public:
+ RecodeAlleles() : ProcessImpl<RecodeAlleles>(stepname, "Recode the referent / alternate alleles in markers") {};
+ virtual ~RecodeAlleles(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void PrintSummary();
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ std::string recode_fn;
+ std::string out_fn;
+ bool auto_recode;
+ bool map_input;
+ bool map3;
+ bool map_output;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/SampleMissingFilter.cpp b/process/SampleMissingFilter.cpp
new file mode 100644
index 0000000..0f258ae
--- /dev/null
+++ b/process/SampleMissingFilter.cpp
@@ -0,0 +1,60 @@
+#include "SampleMissingFilter.h" //////CHANGE TO REAL MODULE NAME
+
+#include "data/DataSet.h"
+
+#include "util/Logger.h"
+#include "util/Missing.h"
+
+#include <boost/lexical_cast.hpp>
+
+using std::string;
+
+using PLATO::Data::DataSet;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string SampleMissingFilter::stepname = SampleMissingFilter::doRegister("filter-sample-call");
+
+//PrintSummary()
+//used to output results after processing the data
+void SampleMissingFilter::PrintSummary(){
+ //output for process goes here
+ //
+ Utility::Logger::log("Sample Call Filter: Dropped " + boost::lexical_cast<string>(_n_filtered) + " Samples.\n");
+}
+
+//process()
+//main method to get the process going and to the work
+void SampleMissingFilter::process(DataSet& ds){
+
+ _n_filtered = 0;
+ DataSet::sample_iterator si = ds.beginSample();
+ while(si != ds.endSample()){
+ if(1 - Utility::Missing::sampleMissing(ds, **si) < _thresh){
+ (*si)->setEnabled(false);
+ }
+
+ ++si;
+ }
+}
+
+po::options_description& SampleMissingFilter::appendOptions(po::options_description& opts){
+ po::options_description subopts("Sample Call Rate Options");
+
+ subopts.add_options()
+ ("threshold", po::value<double>(&_thresh)->default_value(0.99, "0.99"),"Drop all samples with a call rate below this threshold")
+ ;
+
+ opts.add(subopts);
+ return opts;
+}
+
+void SampleMissingFilter::parseOptions(const po::variables_map& vm){
+ // no need to do anything here!
+}
+
+}
+}
diff --git a/process/SampleMissingFilter.h b/process/SampleMissingFilter.h
new file mode 100644
index 0000000..3b42485
--- /dev/null
+++ b/process/SampleMissingFilter.h
@@ -0,0 +1,37 @@
+#ifndef PROCESSLIB_SAMPLEMISSING_FILTER_H //change to actual process name
+#define PROCESSLIB_SAMPLEMISSING_FILTER_H //change to actual process name
+
+#include <string>
+
+#include "Process.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class SampleMissingFilter : public ProcessImpl<SampleMissingFilter>{
+private:
+ const static std::string stepname;
+
+public:
+ SampleMissingFilter() : ProcessImpl<SampleMissingFilter>(stepname, "Filter the dataset based on sample call rate") {};
+ virtual ~SampleMissingFilter(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void PrintSummary();
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+
+ double _thresh;
+ int _n_filtered;
+
+};
+
+}
+}
+
+#endif
diff --git a/process/TraitLoader.cpp b/process/TraitLoader.cpp
new file mode 100644
index 0000000..38efe5a
--- /dev/null
+++ b/process/TraitLoader.cpp
@@ -0,0 +1,136 @@
+#include "TraitLoader.h"
+
+#include <fstream>
+#include <sstream>
+#include <algorithm>
+#include <stdexcept>
+#include <set>
+
+#include <boost/algorithm/string.hpp>
+#include <boost/lexical_cast.hpp>
+
+#include "util/Logger.h"
+
+#include "data/DataSet.h"
+#include "data/Sample.h"
+
+namespace po = boost::program_options;
+
+using std::string;
+using std::vector;
+using std::stringstream;
+using std::ifstream;
+using std::set;
+
+using boost::algorithm::split;
+using boost::algorithm::is_any_of;
+
+using PLATO::Utility::Logger;
+using PLATO::Data::Sample;
+using PLATO::Data::DataSet;
+
+namespace PLATO {
+namespace ProcessLib {
+
+const std::string TraitLoader::stepname = TraitLoader::doRegister("load-trait");
+
+void TraitLoader::process(DataSet& ds) {
+ vector<string>::const_iterator fn_itr = trait_fns.begin();
+
+ while (fn_itr != trait_fns.end()) {
+
+ ifstream input((*fn_itr).c_str());
+
+ if (!input.is_open()) {
+ Logger::log_err("Error opening trait file: " + (*fn_itr), true);
+ }
+
+ string line;
+ getline(input, line);
+ vector<string> headers;
+ split(headers, line, is_any_of(" \n\t"), boost::token_compress_on);
+
+ vector<string> values;
+ values.reserve(headers.size());
+ int lineno = 1;
+ set<const Sample*> enabled_samples(ds.beginSample(), ds.endSample());
+
+ while (getline(input, line)) {
+ ++lineno;
+ split(values, line, is_any_of(" \n\t"), boost::token_compress_on);
+
+ Sample* s = 0;
+ if (no_fid) {
+ s = ds.getSample(values[0]);
+ } else {
+ s = ds.getSample(values[0], values[1]);
+ }
+
+ if (!s) {
+ string err("Extra sample found on line " + boost::lexical_cast<
+ string>(lineno));
+ ;
+ Logger::log_err(err, !(extra_samples || dummy_samples));
+ if (dummy_samples) {
+ if (no_fid) {
+ s = ds.addSample(values[0]);
+ } else {
+ s = ds.addSample(values[0], values[1]);
+ }
+ }
+
+ } else {
+ enabled_samples.erase(s);
+ }
+
+ if (s) {
+ for (unsigned int i = (1 + (!no_fid)); i < std::min(
+ values.size(), headers.size()); i++) {
+ float val;
+ if (values[i] != missing_val) {
+ if (!(stringstream(values[i]) >> val)) {
+ Logger::log_err("Unparseable value for '"
+ + headers[i] + "' on line "
+ + boost::lexical_cast<string>(lineno),
+ !ignore_error);
+ } else {
+ ds.addTrait(headers[i], s, val);
+ }
+ }
+ }
+ }
+ }
+
+ input.close();
+
+ if(enabled_samples.size() > 0){
+ Logger::log_err("Trait data not given in " + *fn_itr + " for some previously loaded samples.", require_complete);
+ }
+ ++fn_itr;
+ }
+
+}
+
+po::options_description& TraitLoader::appendOptions(
+ po::options_description& opts) {
+ po::options_description trait_opts("Trait Loading Options");
+
+ trait_opts.add_options()("file", po::value<vector<string> >(&trait_fns)->composing(),"Trait file to load")
+ ("missing", po::value<string>(&missing_val),"Missing value")
+ ("no-fid", po::bool_switch(&no_fid),"Trait file has no FamID column")
+ ("ignore-error",po::bool_switch(&ignore_error),"Treat any conversion errors as missing")
+ ("extra-samples", po::bool_switch(&extra_samples),"Ignore any samples that cannot be mapped to existing data")
+ ("dummy-samples", po::bool_switch(&dummy_samples),"Create samples for any that cannot be mapped to existing data")
+ ("require-complete", po::bool_switch(&require_complete), "Require trait data for all (enabled) samples loaded so far");
+
+ opts.add(trait_opts);
+
+ return opts;
+}
+
+void TraitLoader::parseOptions(const po::variables_map& vm) {
+}
+
+}
+}
+
diff --git a/process/TraitLoader.h b/process/TraitLoader.h
new file mode 100644
index 0000000..6a8fa72
--- /dev/null
+++ b/process/TraitLoader.h
@@ -0,0 +1,40 @@
+#ifndef PROCESSLIB_TRAITLOADER_H
+#define PROCESSLIB_TRAITLOADER_H
+
+#include "Process.h"
+
+#include <string>
+#include <vector>
+namespace PLATO{
+namespace ProcessLib {
+
+class TraitLoader : public ProcessImpl<TraitLoader> {
+
+private:
+ const static std::string stepname;
+
+public:
+ TraitLoader() : ProcessImpl<TraitLoader>(stepname, "Command to load numeric trait/covariate data into PLATO") {};
+ virtual ~TraitLoader(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+protected:
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+ std::vector<std::string> trait_fns;
+ std::string missing_val;
+
+ bool no_fid;
+ bool ignore_error;
+ bool extra_samples;
+ bool dummy_samples;
+ bool require_complete;
+};
+
+}
+}
+
+#endif /* INPUTPROCESS_H_ */
diff --git a/process/TraitMissingFilter.cpp b/process/TraitMissingFilter.cpp
new file mode 100644
index 0000000..5159140
--- /dev/null
+++ b/process/TraitMissingFilter.cpp
@@ -0,0 +1,60 @@
+#include "TraitMissingFilter.h" //////CHANGE TO REAL MODULE NAME
+
+#include "data/DataSet.h"
+
+#include "util/Logger.h"
+#include "util/Missing.h"
+
+#include <boost/lexical_cast.hpp>
+
+using std::string;
+
+using PLATO::Data::DataSet;
+
+namespace po=boost::program_options;
+
+namespace PLATO{
+namespace ProcessLib{
+
+const string TraitMissingFilter::stepname = TraitMissingFilter::doRegister("filter-trait-missing");
+
+//PrintSummary()
+//used to output results after processing the data
+void TraitMissingFilter::PrintSummary(){
+ //output for process goes here
+ //
+ Utility::Logger::log("Trait Missing Filter: Dropped " + boost::lexical_cast<string>(_n_filtered) + " Traits.\n");
+}
+
+//process()
+//main method to get the process going and to the work
+void TraitMissingFilter::process(DataSet& ds){
+
+ _n_filtered = 0;
+ DataSet::trait_iterator ti = ds.beginTrait();
+ while(ti != ds.endTrait()){
+ if(1 - Utility::Missing::traitMissing(ds, *ti) < _thresh){
+ ds.setTraitEnabled(*ti, false);
+ }
+
+ ++ti;
+ }
+}
+
+po::options_description& TraitMissingFilter::appendOptions(po::options_description& opts){
+ po::options_description subopts("Sample Call Rate Options");
+
+ subopts.add_options()
+ ("threshold", po::value<double>(&_thresh)->default_value(0.99, "0.99"),"Drop all traits with a missing rate below this threshold")
+ ;
+
+ opts.add(subopts);
+ return opts;
+}
+
+void TraitMissingFilter::parseOptions(const po::variables_map& vm){
+ // no need to do anything here!
+}
+
+}
+}
diff --git a/process/TraitMissingFilter.h b/process/TraitMissingFilter.h
new file mode 100644
index 0000000..d447a58
--- /dev/null
+++ b/process/TraitMissingFilter.h
@@ -0,0 +1,37 @@
+#ifndef PROCESSLIB_TRAITMISSING_FILTER_H //change to actual process name
+#define PROCESSLIB_TRAITMISSING_FILTER_H //change to actual process name
+
+#include <string>
+
+#include "Process.h"
+
+namespace PLATO{
+namespace ProcessLib{
+
+class TraitMissingFilter : public ProcessImpl<TraitMissingFilter>{
+private:
+ const static std::string stepname;
+
+public:
+ TraitMissingFilter() : ProcessImpl<TraitMissingFilter>(stepname, "Filter the traits based on missingness rate") {};
+ virtual ~TraitMissingFilter(){};
+
+ virtual void parseOptions(const boost::program_options::variables_map& vm);
+
+
+protected:
+ virtual void PrintSummary();
+ virtual void process(Data::DataSet&);
+ virtual boost::program_options::options_description& appendOptions(boost::program_options::options_description& opts);
+
+private:
+
+ double _thresh;
+ int _n_filtered;
+
+};
+
+}
+}
+
+#endif
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/plato.git
More information about the debian-med-commit
mailing list