[med-svn] [plato] 10/12: Update upstream source from tag 'upstream/2.0.0'
Andreas Tille
tille at debian.org
Mon Dec 18 19:43:41 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository plato.
commit fd27e403c11b167dcc1962e7fa5c4e3ad9df90d1
Merge: 0eb04f9 a41f1c8
Author: Andreas Tille <tille at debian.org>
Date: Mon Dec 18 20:40:28 2017 +0100
Update upstream source from tag 'upstream/2.0.0'
Update to upstream version '2.0.0'
with Debian dir 852aef5574dec0672e770ea6cdbd11a1212bc71e
CHANGELOG | 50 +
CREATED | 0
MPIProcess.cpp | 154 +
MPIProcess.h | 68 +
MPIProcessFactory.cpp | 41 +
MPIProcessFactory.h | 51 +
Makefile.am | 182 +
Makefile.in | 1336 ++
Process.cpp | 31 +
Process.h | 68 +
ProcessFactory.cpp | 23 +
ProcessFactory.h | 37 +
README.txt | 25 +
aclocal.m4 | 1126 ++
config.guess | 1501 ++
config.h.in | 349 +
config.sub | 1705 ++
configure | 27044 ++++++++++++++++++++++++++
configure.ac | 49 +
depcomp | 630 +
doc/MPI_API.odt | Bin 0 -> 29562 bytes
doc/manual.odt | Bin 0 -> 39833 bytes
install-sh | 520 +
ltmain.sh | 8406 ++++++++
main.cpp | 1313 ++
main.h | 43 +
make/m4/ax_boost_base.m4 | 237 +
make/m4/ax_boost_lib.m4 | 104 +
make/m4/ax_check_enable_debug.m4 | 98 +
make/m4/ax_check_enable_loki.m4 | 15 +
make/m4/ax_compare_version.m4 | 177 +
make/m4/ax_freetype_base.m4 | 123 +
make/m4/ax_path_gsl.m4 | 164 +
make/m4/ax_prog_cc_mpi.m4 | 171 +
make/m4/ax_prog_cxx_mpi.m4 | 178 +
make/m4/ax_prog_python_version.m4 | 71 +
make/m4/ax_python_module.m4 | 49 +
make/m4/ax_soci_core.m4 | 239 +
make/m4/ax_soci_sqlite.m4 | 280 +
make/m4/libtool.m4 | 7360 +++++++
make/m4/ltoptions.m4 | 368 +
make/m4/ltsugar.m4 | 123 +
make/m4/ltversion.m4 | 23 +
make/m4/lt~obsolete.m4 | 92 +
make/m4/rl_configure.m4 | 136 +
method_lib/Makefile.am | 317 +
method_lib/Makefile.in | 1009 +
method_lib/analysis/Correction.cpp | 117 +
method_lib/analysis/Correction.h | 89 +
method_lib/analysis/Encoding.cpp | 79 +
method_lib/analysis/Encoding.h | 45 +
method_lib/analysis/Regression.cpp | 2884 +++
method_lib/analysis/Regression.h | 1147 ++
method_lib/data/BiallelicSample.cpp | 103 +
method_lib/data/BiallelicSample.h | 43 +
method_lib/data/DataSet.cpp | 233 +
method_lib/data/DataSet.h | 228 +
method_lib/data/Family.cpp | 0
method_lib/data/Family.h | 96 +
method_lib/data/Marker.cpp | 118 +
method_lib/data/Marker.h | 170 +
method_lib/data/PhasedBiallelicSample.cpp | 77 +
method_lib/data/PhasedBiallelicSample.h | 42 +
method_lib/data/PhasedPolyallelicSample.cpp | 58 +
method_lib/data/PhasedPolyallelicSample.h | 39 +
method_lib/data/PolyallelicSample.cpp | 71 +
method_lib/data/PolyallelicSample.h | 38 +
method_lib/data/Sample.cpp | 57 +
method_lib/data/Sample.h | 129 +
method_lib/util/CommandLineParser.h | 347 +
method_lib/util/DataLoader.cpp | 1340 ++
method_lib/util/DataLoader.h | 184 +
method_lib/util/GSLUtils.cpp | 105 +
method_lib/util/GSLUtils.h | 43 +
method_lib/util/ICompressedFile.cpp | 61 +
method_lib/util/ICompressedFile.h | 45 +
method_lib/util/InputManager.cpp | 76 +
method_lib/util/InputManager.h | 91 +
method_lib/util/Logger.cpp | 51 +
method_lib/util/Logger.h | 53 +
method_lib/util/MPIUtils.cpp | 16 +
method_lib/util/MPIUtils.h | 53 +
method_lib/util/Missing.cpp | 70 +
method_lib/util/Missing.h | 29 +
method_lib/util/OutputPLINK.cpp | 40 +
method_lib/util/OutputPLINK.h | 37 +
method_lib/util/ThreadPool.cpp | 110 +
method_lib/util/ThreadPool.h | 68 +
missing | 376 +
process/AlleleFreqFilter.cpp | 64 +
process/AlleleFreqFilter.h | 39 +
process/AutoRegression.cpp | 212 +
process/AutoRegression.h | 111 +
process/BatchProcess.cpp | 95 +
process/BatchProcess.h | 39 +
process/ConcordanceProcess.cpp | 324 +
process/ConcordanceProcess.h | 63 +
process/ExampleModule.cpp | 58 +
process/ExampleModule.h | 36 +
process/InputProcess.cpp | 33 +
process/InputProcess.h | 37 +
process/LinearRegression.cpp | 283 +
process/LinearRegression.h | 52 +
process/LogisticRegression.cpp | 475 +
process/LogisticRegression.h | 101 +
process/MarkerMissingFilter.cpp | 62 +
process/MarkerMissingFilter.h | 37 +
process/OutputBED.cpp | 192 +
process/OutputBED.h | 47 +
process/OutputBeagle.cpp | 200 +
process/OutputBeagle.h | 95 +
process/OutputEigenstrat.cpp | 102 +
process/OutputEigenstrat.h | 40 +
process/OutputPED.cpp | 105 +
process/OutputPED.h | 40 +
process/OutputTPED.cpp | 106 +
process/OutputTPED.h | 40 +
process/RecodeAlleles.cpp | 143 +
process/RecodeAlleles.h | 40 +
process/SampleMissingFilter.cpp | 60 +
process/SampleMissingFilter.h | 37 +
process/TraitLoader.cpp | 136 +
process/TraitLoader.h | 40 +
process/TraitMissingFilter.cpp | 60 +
process/TraitMissingFilter.h | 37 +
125 files changed, 68785 insertions(+)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/plato.git
More information about the debian-med-commit
mailing list