[med-svn] [unc-fish] 09/12: Update upstream source from tag 'upstream/1.0+dfsg'
Andreas Tille
tille at debian.org
Fri Dec 29 21:42:11 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository unc-fish.
commit cf43d836d918b528010760cac5122eb0ca57fcc9
Merge: c2be6e4 4c01c6f
Author: Andreas Tille <tille at debian.org>
Date: Fri Dec 29 22:36:54 2017 +0100
Update upstream source from tag 'upstream/1.0+dfsg'
Update to upstream version '1.0+dfsg'
with Debian dir 78fb320ca3454a171472366090fec84d4a3a6354
INSTALL.txt | 69 +
LICENSE.txt | 168 +
README.txt | 21 +
SAMPLES.txt | 26 +
docs/fishmanual.pdf | Bin 0 -> 117013 bytes
docs/fishmanual/WARNINGS | 3 +
docs/fishmanual/fishmanual.css | 30 +
docs/fishmanual/fishmanual.html | 197 +
docs/fishmanual/images.aux | 1 +
docs/fishmanual/images.log | 313 +
docs/fishmanual/images.pl | 187 +
docs/fishmanual/images.tex | 381 +
docs/fishmanual/img1.png | Bin 0 -> 203 bytes
docs/fishmanual/img10.png | Bin 0 -> 927 bytes
docs/fishmanual/img11.png | Bin 0 -> 1730 bytes
docs/fishmanual/img12.png | Bin 0 -> 201 bytes
docs/fishmanual/img13.png | Bin 0 -> 1065 bytes
docs/fishmanual/img14.png | Bin 0 -> 280 bytes
docs/fishmanual/img15.png | Bin 0 -> 234 bytes
docs/fishmanual/img16.png | Bin 0 -> 4525 bytes
docs/fishmanual/img17.png | Bin 0 -> 994 bytes
docs/fishmanual/img18.png | Bin 0 -> 296 bytes
docs/fishmanual/img19.png | Bin 0 -> 235 bytes
docs/fishmanual/img2.png | Bin 0 -> 219 bytes
docs/fishmanual/img20.png | Bin 0 -> 217 bytes
docs/fishmanual/img21.png | Bin 0 -> 262 bytes
docs/fishmanual/img22.png | Bin 0 -> 244 bytes
docs/fishmanual/img23.png | Bin 0 -> 600 bytes
docs/fishmanual/img24.png | Bin 0 -> 233 bytes
docs/fishmanual/img25.png | Bin 0 -> 230 bytes
docs/fishmanual/img26.png | Bin 0 -> 753 bytes
docs/fishmanual/img27.png | Bin 0 -> 258 bytes
docs/fishmanual/img28.png | Bin 0 -> 731 bytes
docs/fishmanual/img29.png | Bin 0 -> 97 bytes
docs/fishmanual/img3.png | Bin 0 -> 348 bytes
docs/fishmanual/img30.png | Bin 0 -> 221 bytes
docs/fishmanual/img4.png | Bin 0 -> 256 bytes
docs/fishmanual/img5.png | Bin 0 -> 225 bytes
docs/fishmanual/img6.png | Bin 0 -> 509 bytes
docs/fishmanual/img7.png | Bin 0 -> 238 bytes
docs/fishmanual/img8.png | Bin 0 -> 515 bytes
docs/fishmanual/img9.png | Bin 0 -> 534 bytes
docs/fishmanual/index.html | 197 +
docs/fishmanual/internals.pl | 82 +
docs/fishmanual/labels.pl | 157 +
docs/fishmanual/node1.html | 188 +
docs/fishmanual/node10.html | 80 +
docs/fishmanual/node11.html | 75 +
docs/fishmanual/node12.html | 124 +
docs/fishmanual/node13.html | 147 +
docs/fishmanual/node14.html | 100 +
docs/fishmanual/node15.html | 77 +
docs/fishmanual/node16.html | 80 +
docs/fishmanual/node17.html | 94 +
docs/fishmanual/node18.html | 128 +
docs/fishmanual/node19.html | 87 +
docs/fishmanual/node2.html | 97 +
docs/fishmanual/node20.html | 166 +
docs/fishmanual/node21.html | 75 +
docs/fishmanual/node22.html | 201 +
docs/fishmanual/node23.html | 144 +
docs/fishmanual/node24.html | 149 +
docs/fishmanual/node25.html | 110 +
docs/fishmanual/node26.html | 88 +
docs/fishmanual/node27.html | 130 +
docs/fishmanual/node28.html | 85 +
docs/fishmanual/node29.html | 85 +
docs/fishmanual/node3.html | 129 +
docs/fishmanual/node30.html | 101 +
docs/fishmanual/node31.html | 102 +
docs/fishmanual/node32.html | 77 +
docs/fishmanual/node33.html | 79 +
docs/fishmanual/node34.html | 166 +
docs/fishmanual/node35.html | 85 +
docs/fishmanual/node36.html | 86 +
docs/fishmanual/node37.html | 181 +
docs/fishmanual/node38.html | 77 +
docs/fishmanual/node39.html | 113 +
docs/fishmanual/node4.html | 75 +
docs/fishmanual/node40.html | 119 +
docs/fishmanual/node41.html | 87 +
docs/fishmanual/node42.html | 88 +
docs/fishmanual/node43.html | 197 +
docs/fishmanual/node44.html | 126 +
docs/fishmanual/node45.html | 128 +
docs/fishmanual/node46.html | 189 +
docs/fishmanual/node47.html | 77 +
docs/fishmanual/node48.html | 81 +
docs/fishmanual/node5.html | 285 +
docs/fishmanual/node6.html | 78 +
docs/fishmanual/node7.html | 97 +
docs/fishmanual/node8.html | 95 +
docs/fishmanual/node9.html | 89 +
makefile | 16 +
sample_input/blk.out | 6969 ++++++
sample_input/check | 110 +
sample_input/control.txt | 33 +
sample_input/ctg.out | 25509 ++++++++++++++++++++++
sample_input/data/map1.txt | 6494 ++++++
sample_input/data/map2.txt | 4038 ++++
sample_input/data/map3.txt | 5221 +++++
sample_input/data/map4.txt | 3825 ++++
sample_input/data/map5.txt | 5888 +++++
sample_input/data/match1v1.txt | 44664 ++++++++++++++++++++++++++++++++++++++
sample_input/data/match1v2.txt | 29477 +++++++++++++++++++++++++
sample_input/data/match1v3.txt | 35011 ++++++++++++++++++++++++++++++
sample_input/data/match1v4.txt | 28336 ++++++++++++++++++++++++
sample_input/data/match1v5.txt | 36799 +++++++++++++++++++++++++++++++
sample_input/data/match2v1.txt | 23897 ++++++++++++++++++++
sample_input/data/match2v2.txt | 20010 +++++++++++++++++
sample_input/data/match2v3.txt | 21496 ++++++++++++++++++
sample_input/data/match2v4.txt | 17409 +++++++++++++++
sample_input/data/match2v5.txt | 20171 +++++++++++++++++
sample_input/data/match3v1.txt | 30768 ++++++++++++++++++++++++++
sample_input/data/match3v2.txt | 22947 ++++++++++++++++++++
sample_input/data/match3v3.txt | 32255 +++++++++++++++++++++++++++
sample_input/data/match3v4.txt | 21188 ++++++++++++++++++
sample_input/data/match3v5.txt | 28195 ++++++++++++++++++++++++
sample_input/data/match4v1.txt | 23260 ++++++++++++++++++++
sample_input/data/match4v2.txt | 18028 +++++++++++++++
sample_input/data/match4v3.txt | 20181 +++++++++++++++++
sample_input/data/match4v4.txt | 19176 ++++++++++++++++
sample_input/data/match4v5.txt | 21079 ++++++++++++++++++
sample_input/data/match5v1.txt | 33479 ++++++++++++++++++++++++++++
sample_input/data/match5v2.txt | 22793 +++++++++++++++++++
sample_input/data/match5v3.txt | 29137 +++++++++++++++++++++++++
sample_input/data/match5v4.txt | 23253 ++++++++++++++++++++
sample_input/data/match5v5.txt | 33351 ++++++++++++++++++++++++++++
sample_input/grd.out | 22101 +++++++++++++++++++
sample_output/blocks.txt | 6969 ++++++
sample_output/contigs.txt | 25509 ++++++++++++++++++++++
sample_output/fish_out.txt | 117 +
sample_output/grids.txt | 22101 +++++++++++++++++++
sample_output/simpleblocks.txt | 510 +
src/blocks.h | 180 +
src/dpalgo.h | 138 +
src/fish.cpp | 373 +
src/grids.h | 304 +
src/output_sc.h | 122 +
src/point.cpp | 14 +
src/point.h | 14 +
src/readfile.h | 472 +
src/tandem.h | 324 +
src/usage.h | 176 +
144 files changed, 801236 insertions(+)
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