[med-svn] [plink1.9] 02/06: Merge tag 'upstream/1.90_b3.45-170113'

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository plink1.9.

commit 02d65ea56c44371fd5056f5786b348e129da79cf
Merge: 0a64ec8 0cc4cbb
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Mon Jan 16 23:02:50 2017 +0100

    Merge tag 'upstream/1.90_b3.45-170113'
    
    Upstream version 1.90~b3.45-170113

 Makefile            |   6 +--
 pigz.c              |   4 +-
 plink.c             |  41 ++++++++++++---------
 plink_assoc.c       |   2 +-
 plink_assoc.h       |   2 +-
 plink_calc.c        |   2 +-
 plink_cluster.c     |   2 +-
 plink_cnv.c         |   2 +-
 plink_cnv.h         |   2 +-
 plink_common.c      |  12 ++++--
 plink_common.h      |  79 +++++++++++++++++++--------------------
 plink_data.c        | 104 ++++++++++++++++++++++++++++++++++++++++------------
 plink_data.h        |   2 +-
 plink_dosage.c      |   2 +-
 plink_dosage.h      |   2 +-
 plink_family.c      |   2 +-
 plink_family.h      |   2 +-
 plink_filter.c      |   2 +-
 plink_filter.h      |   2 +-
 plink_first_compile |  10 ++---
 plink_glm.c         |   4 +-
 plink_glm.h         |   2 +-
 plink_help.c        |  16 +++++---
 plink_help.h        |   2 +-
 plink_homozyg.c     |   2 +-
 plink_homozyg.h     |   2 +-
 plink_lasso.c       |   2 +-
 plink_lasso.h       |   2 +-
 plink_ld.c          |   8 +++-
 plink_ld.h          |   2 +-
 plink_matrix.c      |   6 +--
 plink_matrix.h      |   2 +-
 plink_misc.c        |   2 +-
 plink_misc.h        |   2 +-
 plink_perm.c        |   2 +-
 plink_perm.h        |   2 +-
 plink_rserve.c      |   2 +-
 plink_rserve.h      |   2 +-
 plink_set.c         |   2 +-
 plink_set.h         |   2 +-
 plink_stats.c       |   2 +-
 plink_stats.h       |   2 +-
 42 files changed, 216 insertions(+), 136 deletions(-)

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