[med-svn] [plink1.9] 03/06: Update d/*changelogs

[Dylan Aïssi]

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bob.dybian-guest pushed a commit to branch master
in repository plink1.9.

commit 9fc2cc905c9cc863e677a2a4b4586a6ec2d50656
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date:   Mon Jan 16 23:06:38 2017 +0100

    Update d/*changelogs
---
 debian/changelog          |  6 ++++++
 debian/upstream.changelog | 16 +++++++++-------
 2 files changed, 15 insertions(+), 7 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index e0c95ec..4a5e658 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+plink1.9 (1.90~b3.45-170113-1) UNRELEASED; urgency=medium
+
+  * New upstream release.
+
+ -- Dylan Aïssi <bob.dybian at gmail.com>  Mon, 16 Jan 2017 23:05:08 +0100
+
 plink1.9 (1.90~b3.44-161117-1) unstable; urgency=medium
 
   * New upstream release.
diff --git a/debian/upstream.changelog b/debian/upstream.changelog
index fabe62a..1844b54 100644
--- a/debian/upstream.changelog
+++ b/debian/upstream.changelog
@@ -1,18 +1,20 @@
 # Copy/Paste from https://www.cog-genomics.org/plink2
 
-17 Nov 2016: chrX and chrY are no longer mishandled with --chr-set.
+13 January 2017: --ld-snps now works properly with other variant filters. --set-mixed-mt-missing flag added.
 
-13 Nov: --geno/--missing now treat heterozygous haploid calls as nonmissing; this is consistent with --mind, and PLINK 1.07's behavior with --recode/--make-bed active. They're now inconsistent with what PLINK 1.07 did without --recode/--make-bed; use --make-bed + --set-hh-missing first if you want the old behavior. '--ci 0.95' no longer produces 'L94'/'U94' column names when plink gets unlucky with rounding. Minor --exclude/--extract/--flip bugfix for input files with no newline at the e [...]
+17 November 2016: chrX and chrY are no longer mishandled with --chr-set.
 
-20 Sep: VCF export no longer erases an alt allele absent from the immediate dataset, due to a retroactive revision to the VCF specification. Fixed '--model gen' permutation testing bug.
+13 November: --geno/--missing now treat heterozygous haploid calls as nonmissing; this is consistent with --mind, and PLINK 1.07's behavior with --recode/--make-bed active. They're now inconsistent with what PLINK 1.07 did without --recode/--make-bed; use --make-bed + --set-hh-missing first if you want the old behavior. '--ci 0.95' no longer produces 'L94'/'U94' column names when plink gets unlucky with rounding. Minor --exclude/--extract/--flip bugfix for input files with no newline at  [...]
 
-10 Sep: --remove-cluster-names + --family bugfix. --indep-pairwise/--indep-pairphase consistency improvements (MAF comparison now takes floating point imprecision into account; a few pairwise comparisons are no longer improperly skipped when the window is kb-based).
+20 September: VCF export no longer erases an alt allele absent from the immediate dataset, due to a retroactive revision to the VCF specification. Fixed '--model gen' permutation testing bug.
 
-16 Aug: --merge-x 'no-fail' modifier works properly again. '--hard-call-threshold random' bugfix for probabilities with less than 4-digit precision.
+10 September: --remove-cluster-names + --family bugfix. --indep-pairwise/--indep-pairphase consistency improvements (MAF comparison now takes floating point imprecision into account; a few pairwise comparisons are no longer improperly skipped when the window is kb-based).
 
-5 Aug: --silent Windows bugfix. --r/--r2 'd' and 'dprime-signed' modes added. --ld-window-cm flag added. --output-missing-genotype now works properly with --make-bed. --genome + --read-freq bugfix.
+16 August: --merge-x 'no-fail' modifier works properly again. '--hard-call-threshold random' bugfix for probabilities with less than 4-digit precision.
 
-7 Jun: --23file X/Y/MT chromosome conversion bugfix. --pheno bugfix (if phenotype was quantitative, but first value was nonnumeric, it was treated as '0' instead of missing in recent builds).
+5 August: --silent Windows bugfix. --r/--r2 'd' and 'dprime-signed' modes added. --ld-window-cm flag added. --output-missing-genotype now works properly with --make-bed. --genome + --read-freq bugfix.
+
+7 June: --23file X/Y/MT chromosome conversion bugfix. --pheno bugfix (if phenotype was quantitative, but first value was nonnumeric, it was treated as '0' instead of missing in recent builds).
 
 16 May: Set test bugfix. '--R debug' bugfix.
 

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