[med-svn] r23818 - in trunk/packages/R/r-bioc-variantannotation/trunk/debian: . patches

[Graham Inggs]

Author: ginggs
Date: 2017-06-09 16:09:17 +0000 (Fri, 09 Jun 2017)
New Revision: 23818

Modified:
   trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog
   trunk/packages/R/r-bioc-variantannotation/trunk/debian/control
   trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch
Log:
New upstream version, update Build-Depends, refresh patch,  upload to unstable

Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog	2017-06-09 16:01:38 UTC (rev 23817)
+++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog	2017-06-09 16:09:17 UTC (rev 23818)
@@ -1,3 +1,13 @@
+r-bioc-variantannotation (1.22.1-1) unstable; urgency=medium
+
+  * Team upload
+  * New upstream version
+  * Update Build-Depends: r-bioc-genomicfeatures (>= 1.27.4),
+    r-bioc-summarizedexperiment (>= 1.5.3), r-bioc-rsamtools (>= 1.28.0)
+  * Refresh debian/patches/use_debian_packaged_zlib.patch
+
+ -- Graham Inggs <ginggs at debian.org>  Fri, 09 Jun 2017 16:59:35 +0200
+
 r-bioc-variantannotation (1.20.2-1) unstable; urgency=medium
 
   * New upstream version

Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/control
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/control	2017-06-09 16:01:38 UTC (rev 23817)
+++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/control	2017-06-09 16:09:17 UTC (rev 23818)
@@ -6,8 +6,10 @@
 Build-Depends: debhelper (>= 10),
                dh-r,
                r-base-dev,
-               r-bioc-genomicfeatures (>= 1.22.1),
-               r-bioc-bsgenome (>= 1.38.0)
+               r-bioc-bsgenome (>= 1.38.0),
+               r-bioc-genomicfeatures (>= 1.27.4),
+               r-bioc-summarizedexperiment (>= 1.5.3),
+               r-bioc-rsamtools (>= 1.28.0),
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/

Modified: trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch	2017-06-09 16:01:38 UTC (rev 23817)
+++ trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch	2017-06-09 16:09:17 UTC (rev 23818)
@@ -5,7 +5,7 @@
 
 --- a/NAMESPACE
 +++ b/NAMESPACE
-@@ -16,8 +16,6 @@ import(SummarizedExperiment)
+@@ -16,8 +16,6 @@
  
  import(Rsamtools)
  
@@ -16,12 +16,12 @@
  importFrom(utils, packageVersion)
 --- a/DESCRIPTION
 +++ b/DESCRIPTION
-@@ -13,7 +13,7 @@ License: Artistic-2.0
+@@ -13,7 +13,7 @@
  Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.15.3), GenomeInfoDb
-         (>= 1.7.1), GenomicRanges (>= 1.19.47), SummarizedExperiment
-         (>= 0.3.1), Rsamtools (>= 1.23.10)
--Imports: utils, DBI, zlibbioc, Biobase, S4Vectors (>= 0.9.47), IRanges
-+Imports: utils, DBI, Biobase, S4Vectors (>= 0.9.47), IRanges
+         (>= 1.11.4), GenomicRanges (>= 1.27.6), SummarizedExperiment
+         (>= 1.5.3), Rsamtools (>= 1.23.10)
+-Imports: utils, DBI, zlibbioc, Biobase, S4Vectors (>= 0.13.13), IRanges
++Imports: utils, DBI, Biobase, S4Vectors (>= 0.13.13), IRanges
          (>= 2.3.25), XVector (>= 0.5.6), Biostrings (>= 2.33.5),
          AnnotationDbi (>= 1.27.9), BSgenome (>= 1.37.6), rtracklayer
-         (>= 1.25.16), GenomicFeatures (>= 1.19.17)
+         (>= 1.25.16), GenomicFeatures (>= 1.27.4)