[med-svn] r23819 - in trunk/packages/R/r-bioc-variantannotation/tags: . 1.22.1-1 1.22.1-1/patches
Graham Inggs
ginggs at moszumanska.debian.org
Fri Jun 9 16:10:44 UTC 2017
Author: ginggs
Date: 2017-06-09 16:10:43 +0000 (Fri, 09 Jun 2017)
New Revision: 23819
Added:
trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/
trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/changelog
trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/control
trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/patches/use_debian_packaged_zlib.patch
Removed:
trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/changelog
trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/control
trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/patches/use_debian_packaged_zlib.patch
Log:
Tagged 1.22.1-1
Deleted: trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/changelog
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog 2017-06-09 14:10:49 UTC (rev 23813)
+++ trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/changelog 2017-06-09 16:10:43 UTC (rev 23819)
@@ -1,74 +0,0 @@
-r-bioc-variantannotation (1.20.2-1) unstable; urgency=medium
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Sun, 04 Dec 2016 13:54:37 +0100
-
-r-bioc-variantannotation (1.20.1-1) unstable; urgency=medium
-
- * New upstream version
- * debhelper 10
- * d/watch: version=4
-
- -- Andreas Tille <tille at debian.org> Wed, 30 Nov 2016 10:35:23 +0100
-
-r-bioc-variantannotation (1.20.0-1) unstable; urgency=medium
-
- * New upstream version
- * Convert to dh-r
- * Generic BioConductor homepage
-
- -- Andreas Tille <tille at debian.org> Thu, 27 Oct 2016 14:21:13 +0200
-
-r-bioc-variantannotation (1.18.0-1) unstable; urgency=medium
-
- * New upstream version
- * cme fix dpkg-control
-
- -- Andreas Tille <tille at debian.org> Wed, 11 May 2016 10:05:34 +0200
-
-r-bioc-variantannotation (1.16.3-1) unstable; urgency=medium
-
- * New upstream version
- Closes: #804223
-
- -- Andreas Tille <tille at debian.org> Fri, 06 Nov 2015 13:08:13 +0100
-
-r-bioc-variantannotation (1.14.13-1) unstable; urgency=medium
-
- * New upstream version
- * Fixed watch file
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Sep 2015 21:49:23 +0200
-
-r-bioc-variantannotation (1.14.6-1) unstable; urgency=medium
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Fri, 17 Jul 2015 23:24:42 +0200
-
-r-bioc-variantannotation (1.14.4-1) unstable; urgency=medium
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Sun, 28 Jun 2015 14:34:18 +0200
-
-r-bioc-variantannotation (1.12.0-1) experimental; urgency=medium
-
- * New upstream version
- * cme fix dpkg-control
- * Adapted dependencies
-
- -- Andreas Tille <tille at debian.org> Tue, 21 Oct 2014 06:32:37 +0200
-
-r-bioc-variantannotation (1.10.5-1) unstable; urgency=medium
-
- * New upstream version
-
- -- Andreas Tille <tille at debian.org> Fri, 08 Aug 2014 14:36:50 +0200
-
-r-bioc-variantannotation (1.10.1-1) unstable; urgency=medium
-
- * Initial release (closes: #755884)
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Jul 2014 09:03:52 +0200
Copied: trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/changelog (from rev 23818, trunk/packages/R/r-bioc-variantannotation/trunk/debian/changelog)
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/changelog (rev 0)
+++ trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/changelog 2017-06-09 16:10:43 UTC (rev 23819)
@@ -0,0 +1,84 @@
+r-bioc-variantannotation (1.22.1-1) unstable; urgency=medium
+
+ * Team upload
+ * New upstream version
+ * Update Build-Depends: r-bioc-genomicfeatures (>= 1.27.4),
+ r-bioc-summarizedexperiment (>= 1.5.3), r-bioc-rsamtools (>= 1.28.0)
+ * Refresh debian/patches/use_debian_packaged_zlib.patch
+
+ -- Graham Inggs <ginggs at debian.org> Fri, 09 Jun 2017 16:59:35 +0200
+
+r-bioc-variantannotation (1.20.2-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Sun, 04 Dec 2016 13:54:37 +0100
+
+r-bioc-variantannotation (1.20.1-1) unstable; urgency=medium
+
+ * New upstream version
+ * debhelper 10
+ * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org> Wed, 30 Nov 2016 10:35:23 +0100
+
+r-bioc-variantannotation (1.20.0-1) unstable; urgency=medium
+
+ * New upstream version
+ * Convert to dh-r
+ * Generic BioConductor homepage
+
+ -- Andreas Tille <tille at debian.org> Thu, 27 Oct 2016 14:21:13 +0200
+
+r-bioc-variantannotation (1.18.0-1) unstable; urgency=medium
+
+ * New upstream version
+ * cme fix dpkg-control
+
+ -- Andreas Tille <tille at debian.org> Wed, 11 May 2016 10:05:34 +0200
+
+r-bioc-variantannotation (1.16.3-1) unstable; urgency=medium
+
+ * New upstream version
+ Closes: #804223
+
+ -- Andreas Tille <tille at debian.org> Fri, 06 Nov 2015 13:08:13 +0100
+
+r-bioc-variantannotation (1.14.13-1) unstable; urgency=medium
+
+ * New upstream version
+ * Fixed watch file
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Sep 2015 21:49:23 +0200
+
+r-bioc-variantannotation (1.14.6-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Fri, 17 Jul 2015 23:24:42 +0200
+
+r-bioc-variantannotation (1.14.4-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Sun, 28 Jun 2015 14:34:18 +0200
+
+r-bioc-variantannotation (1.12.0-1) experimental; urgency=medium
+
+ * New upstream version
+ * cme fix dpkg-control
+ * Adapted dependencies
+
+ -- Andreas Tille <tille at debian.org> Tue, 21 Oct 2014 06:32:37 +0200
+
+r-bioc-variantannotation (1.10.5-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Fri, 08 Aug 2014 14:36:50 +0200
+
+r-bioc-variantannotation (1.10.1-1) unstable; urgency=medium
+
+ * Initial release (closes: #755884)
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Jul 2014 09:03:52 +0200
Deleted: trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/control
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/control 2017-06-09 14:10:49 UTC (rev 23813)
+++ trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/control 2017-06-09 16:10:43 UTC (rev 23819)
@@ -1,25 +0,0 @@
-Source: r-bioc-variantannotation
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Andreas Tille <tille at debian.org>
-Section: gnu-r
-Priority: optional
-Build-Depends: debhelper (>= 10),
- dh-r,
- r-base-dev,
- r-bioc-genomicfeatures (>= 1.22.1),
- r-bioc-bsgenome (>= 1.38.0)
-Standards-Version: 3.9.8
-Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/
-Homepage: https://bioconductor.org/packages/VariantAnnotation/
-
-Package: r-bioc-variantannotation
-Architecture: any
-Depends: ${R:Depends},
- ${misc:Depends},
- ${shlibs:Depends},
-Recommends: ${R:Recommends}
-Suggests: ${R:Suggests}
-Description: BioConductor annotation of genetic variants
- This BioConductor package provides R functions to annotate variants,
- compute amino acid coding changess and to predict coding outcomes.
Copied: trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/control (from rev 23818, trunk/packages/R/r-bioc-variantannotation/trunk/debian/control)
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/control (rev 0)
+++ trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/control 2017-06-09 16:10:43 UTC (rev 23819)
@@ -0,0 +1,27 @@
+Source: r-bioc-variantannotation
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 10),
+ dh-r,
+ r-base-dev,
+ r-bioc-bsgenome (>= 1.38.0),
+ r-bioc-genomicfeatures (>= 1.27.4),
+ r-bioc-summarizedexperiment (>= 1.5.3),
+ r-bioc-rsamtools (>= 1.28.0),
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/
+Homepage: https://bioconductor.org/packages/VariantAnnotation/
+
+Package: r-bioc-variantannotation
+Architecture: any
+Depends: ${R:Depends},
+ ${misc:Depends},
+ ${shlibs:Depends},
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
+Description: BioConductor annotation of genetic variants
+ This BioConductor package provides R functions to annotate variants,
+ compute amino acid coding changess and to predict coding outcomes.
Deleted: trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/patches/use_debian_packaged_zlib.patch
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch 2017-06-09 14:10:49 UTC (rev 23813)
+++ trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/patches/use_debian_packaged_zlib.patch 2017-06-09 16:10:43 UTC (rev 23819)
@@ -1,27 +0,0 @@
-Author: Andreas Tille <tille at debian.org>
-LastChanged: Mon, 16 Jun 2014 15:39:00 +0200
-Description: If the systems includes zlib natively there is no point in
- requiring the import of zlibbioc
-
---- a/NAMESPACE
-+++ b/NAMESPACE
-@@ -16,8 +16,6 @@ import(SummarizedExperiment)
-
- import(Rsamtools)
-
--import(zlibbioc)
--
- importFrom(stats, pchisq, setNames)
-
- importFrom(utils, packageVersion)
---- a/DESCRIPTION
-+++ b/DESCRIPTION
-@@ -13,7 +13,7 @@ License: Artistic-2.0
- Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.15.3), GenomeInfoDb
- (>= 1.7.1), GenomicRanges (>= 1.19.47), SummarizedExperiment
- (>= 0.3.1), Rsamtools (>= 1.23.10)
--Imports: utils, DBI, zlibbioc, Biobase, S4Vectors (>= 0.9.47), IRanges
-+Imports: utils, DBI, Biobase, S4Vectors (>= 0.9.47), IRanges
- (>= 2.3.25), XVector (>= 0.5.6), Biostrings (>= 2.33.5),
- AnnotationDbi (>= 1.27.9), BSgenome (>= 1.37.6), rtracklayer
- (>= 1.25.16), GenomicFeatures (>= 1.19.17)
Copied: trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/patches/use_debian_packaged_zlib.patch (from rev 23818, trunk/packages/R/r-bioc-variantannotation/trunk/debian/patches/use_debian_packaged_zlib.patch)
===================================================================
--- trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/patches/use_debian_packaged_zlib.patch (rev 0)
+++ trunk/packages/R/r-bioc-variantannotation/tags/1.22.1-1/patches/use_debian_packaged_zlib.patch 2017-06-09 16:10:43 UTC (rev 23819)
@@ -0,0 +1,27 @@
+Author: Andreas Tille <tille at debian.org>
+LastChanged: Mon, 16 Jun 2014 15:39:00 +0200
+Description: If the systems includes zlib natively there is no point in
+ requiring the import of zlibbioc
+
+--- a/NAMESPACE
++++ b/NAMESPACE
+@@ -16,8 +16,6 @@
+
+ import(Rsamtools)
+
+-import(zlibbioc)
+-
+ importFrom(stats, pchisq, setNames)
+
+ importFrom(utils, packageVersion)
+--- a/DESCRIPTION
++++ b/DESCRIPTION
+@@ -13,7 +13,7 @@
+ Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.15.3), GenomeInfoDb
+ (>= 1.11.4), GenomicRanges (>= 1.27.6), SummarizedExperiment
+ (>= 1.5.3), Rsamtools (>= 1.23.10)
+-Imports: utils, DBI, zlibbioc, Biobase, S4Vectors (>= 0.13.13), IRanges
++Imports: utils, DBI, Biobase, S4Vectors (>= 0.13.13), IRanges
+ (>= 2.3.25), XVector (>= 0.5.6), Biostrings (>= 2.33.5),
+ AnnotationDbi (>= 1.27.9), BSgenome (>= 1.37.6), rtracklayer
+ (>= 1.25.16), GenomicFeatures (>= 1.27.4)
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