[med-svn] [vsearch] branch debian/jessie-backports updated (236a369 -> d3a1153)
Andreas Tille
tille at debian.org
Fri Jun 9 20:14:49 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch debian/jessie-backports
in repository vsearch.
from 236a369 Backport to Jessie
adds b1189c1 Moved maintenance from SVN to Git
adds 8488925 Removed citation that belongs to different program at authors request
adds b2a6636 Imported Upstream version 1.10.1
adds 09125b2 Merge tag 'upstream/1.10.1'
adds 8e9a555 New upstream version
adds 4a4f7f0 Remove patch applied upstream
adds ff8ea70 Upload to unstable
adds 7a28872 Imported Upstream version 1.11.1
adds 18054a6 New upstream version
adds 09b8b68 cme fix dpkg-control
adds 7c4c9db Drop unused lintian override
adds 784f7ea Better hardeing
adds 05b78bd Upload to unstable
adds f83c1ff Imported Upstream version 1.11.1
adds ecb9cf5 Imported Upstream version 2.0.0
adds 516b274 Merge tag 'upstream/2.0.0'
adds 7f5249a New upstream version
adds d6c774f Upload to unstable
adds ff7f4d0 Imported Upstream version 2.0.2
adds e16877c Merge tag 'upstream/2.0.2'
adds b3e7882 New upstream version
adds 36ed338 version bump
adds 64c75fa Imported Upstream version 2.0.3
adds a6bbada Merge tag 'upstream/2.0.3'
adds 46d8501 use bindnow hardening only
adds 6fc218a update d/changelog
adds 58856c0 disable autopkgtests
adds d65bff7 add bug# in d/changelog
adds a9e174d dch -r
adds 25bd033 make build reproducible
adds ea73ed4 wording in changelog
adds fbd885d Imported Upstream version 2.0.5
adds 981e917 Merge tag 'upstream/2.0.5'
adds 74d8038 New upstream version
adds cc668cc New upstream version 2.3.0
adds f1e6ef8 Merge tag 'upstream/2.3.0'
adds 9ada5f7 New upstream version
adds fbd7d34 New upstream version
adds 34bca89 Imported Upstream version 2.3.2
adds e58cc79 Merge tag 'upstream/2.3.2'
adds 0fb37a6 New upstream version
adds 6582e3f debhelper 10
adds 75e83ca d/watch: version=4
adds 865471f Close bug and upload to unstable
adds c46e44d New upstream version 2.3.4
adds cc2b66d Merge tag 'upstream/2.3.4'
adds 490480b New upstream version
new ca0071c Merge tag 'debian/2.3.4-1' into debian/jessie-backports
new d3a1153 Rebuild for jessie-backports
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 8 +
Makefile.in | 775 ----
README.md | 135 +-
aclocal.m4 | 1152 -----
compile | 347 --
config.h.in | 213 -
configure | 7292 --------------------------------
configure.ac | 7 +-
debian/README.test | 4 +
debian/{tests => _tests}/control | 0
debian/{tests => _tests}/run-unit-test | 0
debian/changelog | 77 +
debian/compat | 2 +-
debian/control | 8 +-
debian/patches/compilerflags.patch | 15 +
debian/patches/series | 2 +-
debian/patches/spelling.patch | 44 -
debian/rules | 2 +
debian/upstream/metadata | 23 -
debian/vsearch.docs | 1 -
debian/vsearch.lintian-overrides | 4 -
debian/watch | 2 +-
depcomp | 791 ----
install-sh | 501 ---
man/Makefile.in | 523 ---
man/vsearch.1 | 1695 +++++---
missing | 215 -
src/Makefile.am | 9 +-
src/Makefile.in | 848 ----
src/align_simd.cc | 38 +
src/allpairs.cc | 6 +-
src/chimera.cc | 141 +-
src/cluster.cc | 129 +-
src/derep.cc | 39 +-
src/dynlibs.cc | 17 +-
src/dynlibs.h | 4 +
src/eestats.cc | 337 ++
src/{shuffle.h => eestats.h} | 2 +-
src/fasta.cc | 440 +-
src/fasta.h | 89 +-
src/fastq.cc | 375 +-
src/fastq.h | 73 +-
src/fastqops.cc | 149 +-
src/fastqops.h | 3 +-
src/fastx.cc | 495 ++-
src/fastx.h | 55 +-
src/linmemalign.cc | 17 +-
src/linmemalign.h | 2 +
src/maps.cc | 61 +-
src/maps.h | 9 +-
src/mask.cc | 8 +-
src/mergepairs.cc | 942 +++--
src/minheap.cc | 54 +-
src/msa.cc | 172 +-
src/otutable.cc | 405 ++
src/{arch.h => otutable.h} | 10 +-
src/pvalue.h | 4843 ---------------------
src/{shuffle.cc => rerep.cc} | 72 +-
src/{shuffle.h => rerep.h} | 2 +-
src/results.cc | 17 +-
src/results.h | 3 +-
src/search.cc | 69 +-
src/searchcore.cc | 117 +-
src/searchcore.h | 4 +-
src/searchexact.cc | 75 +-
src/subsample.cc | 58 +-
src/util.cc | 27 +-
src/vsearch.cc | 697 ++-
src/vsearch.h | 25 +-
test/unclassified.sh | 356 ++
70 files changed, 4997 insertions(+), 20135 deletions(-)
delete mode 100644 Makefile.in
delete mode 100644 aclocal.m4
delete mode 100755 compile
delete mode 100644 config.h.in
delete mode 100755 configure
rename debian/{tests => _tests}/control (100%)
rename debian/{tests => _tests}/run-unit-test (100%)
create mode 100644 debian/patches/compilerflags.patch
delete mode 100644 debian/patches/spelling.patch
delete mode 100644 debian/upstream/metadata
delete mode 100644 debian/vsearch.lintian-overrides
delete mode 100755 depcomp
delete mode 100755 install-sh
delete mode 100644 man/Makefile.in
delete mode 100755 missing
delete mode 100644 src/Makefile.in
create mode 100644 src/eestats.cc
copy src/{shuffle.h => eestats.h} (99%)
create mode 100644 src/otutable.cc
copy src/{arch.h => otutable.h} (88%)
delete mode 100644 src/pvalue.h
copy src/{shuffle.cc => rerep.cc} (70%)
copy src/{shuffle.h => rerep.h} (99%)
create mode 100644 test/unclassified.sh
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