[med-svn] [vsearch] 01/02: Merge tag 'debian/2.3.4-1' into debian/jessie-backports
Andreas Tille
tille at debian.org
Fri Jun 9 20:14:50 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch debian/jessie-backports
in repository vsearch.
commit ca0071c6a52e2ed44bc7fb0c52a5236f174e9ea6
Merge: 236a369 490480b
Author: Andreas Tille <tille at debian.org>
Date: Fri Jun 9 22:09:37 2017 +0200
Merge tag 'debian/2.3.4-1' into debian/jessie-backports
.gitignore | 8 +
Makefile.in | 775 ----
README.md | 135 +-
aclocal.m4 | 1152 -----
compile | 347 --
config.h.in | 213 -
configure | 7292 --------------------------------
configure.ac | 7 +-
debian/README.test | 4 +
debian/{tests => _tests}/control | 0
debian/{tests => _tests}/run-unit-test | 0
debian/changelog | 71 +
debian/compat | 2 +-
debian/control | 8 +-
debian/patches/compilerflags.patch | 15 +
debian/patches/series | 2 +-
debian/patches/spelling.patch | 44 -
debian/rules | 2 +
debian/upstream/metadata | 23 -
debian/vsearch.docs | 1 -
debian/vsearch.lintian-overrides | 4 -
debian/watch | 2 +-
depcomp | 791 ----
install-sh | 501 ---
man/Makefile.in | 523 ---
man/vsearch.1 | 1695 +++++---
missing | 215 -
src/Makefile.am | 9 +-
src/Makefile.in | 848 ----
src/align_simd.cc | 38 +
src/allpairs.cc | 6 +-
src/chimera.cc | 141 +-
src/cluster.cc | 129 +-
src/derep.cc | 39 +-
src/dynlibs.cc | 17 +-
src/dynlibs.h | 4 +
src/eestats.cc | 337 ++
src/{fastqops.h => eestats.h} | 6 +-
src/fasta.cc | 440 +-
src/fasta.h | 89 +-
src/fastq.cc | 375 +-
src/fastq.h | 73 +-
src/fastqops.cc | 149 +-
src/fastqops.h | 3 +-
src/fastx.cc | 495 ++-
src/fastx.h | 55 +-
src/linmemalign.cc | 17 +-
src/linmemalign.h | 2 +
src/maps.cc | 61 +-
src/maps.h | 9 +-
src/mask.cc | 8 +-
src/mergepairs.cc | 942 +++--
src/minheap.cc | 54 +-
src/msa.cc | 172 +-
src/otutable.cc | 405 ++
src/{fastqops.h => otutable.h} | 13 +-
src/pvalue.h | 4843 ---------------------
src/{fastx.h => rerep.cc} | 80 +-
src/{fastqops.h => rerep.h} | 6 +-
src/results.cc | 17 +-
src/results.h | 3 +-
src/search.cc | 69 +-
src/searchcore.cc | 117 +-
src/searchcore.h | 4 +-
src/searchexact.cc | 75 +-
src/subsample.cc | 58 +-
src/util.cc | 27 +-
src/vsearch.cc | 697 ++-
src/vsearch.h | 25 +-
test/unclassified.sh | 356 ++
70 files changed, 5006 insertions(+), 20139 deletions(-)
diff --cc debian/changelog
index cd209d6,98207cd..5292b36
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,9 -1,74 +1,80 @@@
+ vsearch (2.3.4-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Thu, 22 Dec 2016 23:38:39 +0100
+
+ vsearch (2.3.2-1) unstable; urgency=medium
+
+ * New upstream version
+ Closes: #846482
+ * debhelper 10
+ * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org> Mon, 05 Dec 2016 12:04:27 +0100
+
+ vsearch (2.3.0-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Sat, 15 Oct 2016 15:59:44 +0200
+
+ vsearch (2.0.5-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Fri, 16 Sep 2016 15:25:59 +0200
+
+ vsearch (2.0.3-2) unstable; urgency=medium
+
+ * Team upload.
+ * Make build reproducible.
+ - Stop overriding compiler flags in configure.ac.
+
+ -- Sascha Steinbiss <satta at debian.org> Sun, 04 Sep 2016 15:15:28 +0000
+
+ vsearch (2.0.3-1) unstable; urgency=medium
+
+ * Team upload.
+
+ [ Andreas Tille ]
+ * New upstream version (builds with GCC6, closes: #831131)
+
+ [ Sascha Steinbiss ]
+ * Only use bindnow hardening as a shared lib is built.
+ * Disable autopkgtests until vsearch-data package is in the archive.
+
+ -- Sascha Steinbiss <satta at debian.org> Wed, 03 Aug 2016 18:28:59 +0000
+
+ vsearch (2.0.0-1) unstable; urgency=medium
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Thu, 30 Jun 2016 10:29:23 +0200
+
+ vsearch (1.11.1-1) unstable; urgency=medium
+
+ * New upstream version
+ * cme fix dpkg-control
+ * Drop unused lintian override
+ * Better hardening
+
+ -- Andreas Tille <tille at debian.org> Thu, 19 May 2016 12:50:51 +0200
+
+ vsearch (1.10.1-1) unstable; urgency=medium
+
+ * New upstream version
+ * Moved maintenance from SVN to Git
+ * Removed citation that belongs to different program
+
+ -- Andreas Tille <tille at debian.org> Thu, 10 Mar 2016 23:23:44 +0100
+
+vsearch (1.9.10-1~bpo8+1) jessie-backports; urgency=medium
+
+ * Rebuild for jessie-backports.
+
+ -- Andreas Tille <tille at debian.org> Wed, 10 Feb 2016 12:49:17 +0100
+
vsearch (1.9.10-1) unstable; urgency=medium
* New upstream version
--
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