[med-svn] [physamp] 03/07: New upstream version 1.0.1
Andreas Tille
tille at debian.org
Wed Jun 14 14:01:18 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository physamp.
commit d50a940d443b58784227264b83f325012f44da76
Author: Andreas Tille <tille at debian.org>
Date: Wed Jun 14 15:53:16 2017 +0200
New upstream version 1.0.1
---
AUTHORS.txt => AUTHORS | 0
CMakeLists.txt | 258 +---
INSTALL.txt => INSTALL | 0
COPYING.txt => LICENSE | 9 +-
_config.yml | 1 +
buildBin.sh | 7 +
doc/CMakeLists.txt | 7 -
docs/CMakeLists.txt | 73 ++
docs/_config.yml | 1 +
docs/index.md | 35 +
{doc => docs}/physamp.texi | 58 +-
examples/LSU/LSU.dnd | 1 +
examples/LSU/LSU.phy | 1976 ++++++++++++++++++++++++++++++
examples/LSU/PhySamp.bpp | 54 +
examples/PF01049/runFasttree.sh | 3 +
man/CMakeLists.txt | 39 +-
man/{bppalnoptim.1.txt => bppalnoptim.1} | 2 +-
physamp.spec | 87 ++
physamp/AlignmentOptimizer.cpp | 12 +-
physamp/CMakeLists.txt | 27 +-
physamp/PhyloSampler.cpp | 267 ++++
21 files changed, 2677 insertions(+), 240 deletions(-)
diff --git a/AUTHORS.txt b/AUTHORS
similarity index 100%
rename from AUTHORS.txt
rename to AUTHORS
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 4a3446e..bb34cb5 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -3,41 +3,28 @@
# Created: 24/10/2014
# Global parameters
-CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
+CMAKE_MINIMUM_REQUIRED(VERSION 2.8.11)
PROJECT(physamp CXX)
+# Compile options
+SET (CMAKE_CXX_FLAGS "-std=c++11 -Wall -Weffc++ -Wshadow -Wconversion")
+
IF(NOT CMAKE_BUILD_TYPE)
SET(CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING
"Choose the type of build, options are: None Debug Release RelWithDebInfo MinSizeRel."
FORCE)
ENDIF()
-SET(CMAKE_CXX_FLAGS "-Wall -Weffc++ -Wshadow -Wconversion")
-
IF(NOT NO_DEP_CHECK)
SET(NO_DEP_CHECK FALSE CACHE BOOL
"Disable dependencies check for building distribution only."
FORCE)
ENDIF(NOT NO_DEP_CHECK)
-IF(NOT DOC_COMPRESS)
- SET(DOC_COMPRESS gzip CACHE STRING
- "Set program for compressing documentation."
- FORCE)
-ENDIF(NOT DOC_COMPRESS)
-
-IF(NOT DOC_COMPRESS_EXT)
- SET(DOC_COMPRESS_EXT gz CACHE STRING
- "Set extension of compressed documentation."
- FORCE)
-ENDIF(NOT DOC_COMPRESS_EXT)
-
-
IF(NO_DEP_CHECK)
MESSAGE("-- Dependencies checking disabled. Only distribution can be built.")
ELSE(NO_DEP_CHECK)
-
#static linkage?
IF(NOT BUILD_STATIC)
SET(BUILD_STATIC FALSE CACHE BOOL
@@ -46,126 +33,52 @@ IF(NOT BUILD_STATIC)
ENDIF()
IF(BUILD_STATIC)
MESSAGE("-- Static linkage requested.")
- SET(CMAKE_CXX_FLAGS "-static -static-libgcc ${CMAKE_CXX_FLAGS}")
+ SET(CMAKE_CXX_FLAGS "-static -static-libgcc -static-libstdc++ ${CMAKE_CXX_FLAGS}")
ENDIF()
-#build info?
-IF(NOT DEFINED INFO)
- SET(INFO UNIX)
-ENDIF(NOT DEFINED INFO)
-
-#build man pages?
-IF(NOT DEFINED MAN)
- SET(MAN UNIX)
-ENDIF(NOT DEFINED MAN)
-
-#find executables for documentation
-IF(MAN)
- FIND_PROGRAM(NROFF_EXE NAMES nroff)
- IF(NROFF_EXE)
- MESSAGE("-- Found nroff here: ${NROFF_EXE}")
- MESSAGE(" Adding targets: man")
-
- ADD_CUSTOM_TARGET(man
- ALL
- #COMMAND cp bppphysamp.1.txt bppphysamp.1
- #COMMAND ${DOC_COMPRESS} -f bppphysamp.1
- COMMAND cp bppalnoptim.1.txt bppalnoptim.1
- COMMAND ${DOC_COMPRESS} -f bppalnoptim.1
- WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/man
- )
- SET_DIRECTORY_PROPERTIES(PROPERTIES ADDITIONAL_MAKE_CLEAN_FILES "man/bppalnoptim.1.${DOC_COMPRESS_EXT};man/bppphysamp.1.${DOC_COMPRESS_EXT};")
+# Check compression program
+# COMPRESS_PROGRAM controls the choice of program
+# COMPRESS_EXT can be used to override the file extension
+if (NOT COMPRESS_PROGRAM)
+ set (COMPRESS_PROGRAM gzip CACHE STRING "Set program for compressing documentation" FORCE)
+endif ()
+find_program (COMPRESS_BIN NAMES ${COMPRESS_PROGRAM} DOC "${COMPRESS_PROGRAM} compression program")
+if (NOT COMPRESS_BIN)
+ message (STATUS "${COMPRESS_PROGRAM} program not found, text doc will not be compressed")
+else ()
+ # Deduce COMPRESS_EXT for known compression programs if not set
+ if (NOT COMPRESS_EXT)
+ if (${COMPRESS_PROGRAM} STREQUAL "gzip")
+ set (COMPRESS_EXT "gz")
+ elseif (${COMPRESS_PROGRAM} STREQUAL "bzip2")
+ set (COMPRESS_EXT "bz2")
+ else ()
+ set (COMPRESS_EXT "${COMPRESS_PROGRAM}") # Default: program name (works for xz/lzma)
+ endif ()
+ endif ()
+ # Generate command line args (always add -c to output compressed file to stdout)
+ if (${COMPRESS_PROGRAM} STREQUAL "gzip")
+ # -n for no timestamp in files (reproducible builds)
+ set (COMPRESS_ARGS -c -n)
+ else ()
+ set (COMPRESS_ARGS -c)
+ endif ()
+ message (STATUS "Found ${COMPRESS_BIN} compression program, using file extension .${COMPRESS_EXT}")
+endif ()
+
+
+# Find dependencies (add install directory to search)
+IF (CMAKE_INSTALL_PREFIX)
+ SET (CMAKE_PREFIX_PATH "${CMAKE_INSTALL_PREFIX}" ${CMAKE_PREFIX_PATH})
+ENDIF (CMAKE_INSTALL_PREFIX)
+
+include (GNUInstallDirs)
+find_package (bpp-phyl 11.0.0 REQUIRED)
- ELSE()
- MESSAGE(FATAL_ERROR "Program nroff required but not found.")
- ENDIF()
-ENDIF(MAN)
-
-IF(INFO)
- FIND_PROGRAM(MAKEINFO_EXE NAMES makeinfo)
- IF(MAKEINFO_EXE)
- MESSAGE("-- Found makeinfo here: ${MAKEINFO_EXE}")
- MESSAGE(" Adding targets: info, html")
-
- SET(ADD_INFO_TO "ALL")
- MESSAGE(" Adding target info to target all")
-
- ADD_CUSTOM_TARGET(info
- ${ADD_INFO_TO}
- COMMAND ${MAKEINFO_EXE} physamp.texi
- WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/doc
- )
-
- ADD_CUSTOM_TARGET(html
- COMMAND ${MAKEINFO_EXE} --html --css-ref=http://www.w3.org/StyleSheets/Core/Steely physamp.texi
- WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/doc
- )
- ELSE(MAKEINFO_EXE)
- MESSAGE(FATAL_ERROR p"Program makeinfo required but not found.")
- ENDIF(MAKEINFO_EXE)
-ENDIF(INFO)
-
-FIND_PROGRAM(PDFTEX_EXE NAMES pdftex)
-IF(PDFTEX_EXE)
- MESSAGE("-- Found pdftex here: ${PDFTEX_EXE}")
- MESSAGE(" Adding target: pdf")
-
- ADD_CUSTOM_TARGET(pdf
- COMMAND ${PDFTEX_EXE} physamp.texi
- WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/doc
- )
- SET_DIRECTORY_PROPERTIES(PROPERTIES ADDITIONAL_MAKE_CLEAN_FILES "doc/physamp.pdf;doc/physamp.aux;doc/physamp.cp;doc/physamp.fn;doc/physamp.info;doc/physamp.ky;doc/physamp.log;doc/physamp.pg;doc/physamp.toc;doc/physamp.tp;doc/physamp.vr")
-ENDIF(PDFTEX_EXE)
-
-#here is a useful function:
-MACRO(IMPROVED_FIND_LIBRARY OUTPUT_LIBS lib_name include_to_find)
- #start:
- FIND_PATH(${lib_name}_INCLUDE_DIR ${include_to_find})
- INCLUDE_DIRECTORIES(${${lib_name}_INCLUDE_DIR})
-
- IF(BUILD_STATIC)
- SET(${lib_name}_STATIC_NAMES lib${lib_name}.a)
- FIND_LIBRARY(${lib_name}_STATIC_LIBRARY NAMES ${${lib_name}_STATIC_NAMES} PATH_SUFFIXES lib${LIB_SUFFIX})
- IF(${lib_name}_STATIC_LIBRARY)
- MESSAGE("-- Library ${lib_name} found here:")
- MESSAGE(" includes: ${${lib_name}_INCLUDE_DIR}")
- MESSAGE(" static libraries: ${${lib_name}_STATIC_LIBRARY}")
- ELSE()
- MESSAGE(FATAL_ERROR "${lib_name} required but not found.")
- ENDIF()
- #add the dependency:
- SET(${OUTPUT_LIBS} ${${OUTPUT_LIBS}} ${${lib_name}_STATIC_LIBRARY})
- ELSE()
- SET(${lib_name}_NAMES ${lib_name} ${lib_name}.lib ${lib_name}.dll)
- FIND_LIBRARY(${lib_name}_LIBRARY NAMES ${${lib_name}_NAMES} PATH_SUFFIXES lib${LIB_SUFFIX})
- IF(${lib_name}_LIBRARY)
- MESSAGE("-- Library ${lib_name} found here:")
- MESSAGE(" includes: ${${lib_name}_INCLUDE_DIR}")
- MESSAGE(" dynamic libraries: ${${lib_name}_LIBRARY}")
- ELSE()
- MESSAGE(FATAL_ERROR "${lib_name} required but not found.")
- ENDIF()
- #add the dependency:
- SET(${OUTPUT_LIBS} ${${OUTPUT_LIBS}} ${${lib_name}_LIBRARY})
- ENDIF()
-
-ENDMACRO(IMPROVED_FIND_LIBRARY)
-
-# Set the CMAKE_PREFIX_PATH for the find_library fonction when using non
-# standard install location
-IF(CMAKE_INSTALL_PREFIX)
- SET(CMAKE_PREFIX_PATH "${CMAKE_INSTALL_PREFIX}" ${CMAKE_PREFIX_PATH})
-ENDIF(CMAKE_INSTALL_PREFIX)
-
-#Find the libraries. The order is very important for static linkage, it won't
-#link if you change it!
-IMPROVED_FIND_LIBRARY(LIBS bpp-phyl Bpp/Phyl/Tree.h)
-IMPROVED_FIND_LIBRARY(LIBS bpp-seq Bpp/Seq/Alphabet/Alphabet.h)
-IMPROVED_FIND_LIBRARY(LIBS bpp-core Bpp/Clonable.h)
# Subdirectories
ADD_SUBDIRECTORY(physamp)
-ADD_SUBDIRECTORY(doc)
+ADD_SUBDIRECTORY(docs)
ADD_SUBDIRECTORY(man)
ENDIF(NO_DEP_CHECK)
@@ -173,59 +86,22 @@ ENDIF(NO_DEP_CHECK)
# Packager
SET(CPACK_PACKAGE_NAME "physamp")
SET(CPACK_PACKAGE_VENDOR "Julien Y. Dutheil")
-SET(CPACK_PACKAGE_VERSION "0.2.0")
-SET(CPACK_PACKAGE_VERSION_MAJOR "0")
-SET(CPACK_PACKAGE_VERSION_MINOR "2")
-SET(CPACK_PACKAGE_VERSION_PATCH "0")
+SET(CPACK_PACKAGE_VERSION "1.0.1")
+SET(CPACK_PACKAGE_VERSION_MAJOR "1")
+SET(CPACK_PACKAGE_VERSION_MINOR "0")
+SET(CPACK_PACKAGE_VERSION_PATCH "1")
SET(CPACK_PACKAGE_DESCRIPTION_SUMMARY "The Phylogenetic Sampler package")
-SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/COPYING.txt")
-SET(CPACK_RESOURCE_FILE_AUTHORS "${CMAKE_SOURCE_DIR}/AUTHORS.txt")
-SET(CPACK_RESOURCE_FILE_INSTALL "${CMAKE_SOURCE_DIR}/INSTALL.txt")
+SET(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/LICENSE")
+SET(CPACK_RESOURCE_FILE_AUTHORS "${CMAKE_SOURCE_DIR}/AUTHORS")
+SET(CPACK_RESOURCE_FILE_INSTALL "${CMAKE_SOURCE_DIR}/INSTALL")
SET(CPACK_SOURCE_GENERATOR "TGZ")
+# /!\ This assumes that an external build is used
SET(CPACK_SOURCE_IGNORE_FILES
- "CMakeFiles"
- "Makefile"
- "_CPack_Packages"
- "CMakeCache.txt"
- ".*\\\\.cmake"
- ".*\\\\.git"
- ".*\\\\.gz"
- ".*\\\\.zip"
- ".*\\\\.deb"
- ".*\\\\.rpm"
- ".*\\\\.dmg"
- ".*\\\\.sh"
- ".*\\\\..*\\\\.swp"
- ".*stamp"
- "\\\\.sh"
- "bppSuite/\\\\..*"
- "bppSuite/bppphysamp"
- "bppSuite/bppalnoptim"
- "doc/physamp/"
- "doc/physamp\\\\.info"
- "doc/physamp\\\\.toc"
- "doc/physamp\\\\.vr"
- "doc/physamp\\\\.tp"
- "doc/physamp\\\\.log"
- "doc/physamp\\\\.fn"
- "doc/physamp\\\\.ky"
- "doc/physamp\\\\.cp"
- "doc/physamp\\\\.pg"
- "doc/physamp\\\\.aux"
- "doc/physamp\\\\.pdf"
- "man/.*\\\\.1.${DOC_COMPRESS_EXT}"
- "debian/tmp"
- "debian/physamp/"
- "debian/physamp\\\\.substvars"
- "debian/physamp\\\\.debhelper"
- "debian/debhelper\\\\.log"
- "install_manifest.txt"
- "DartConfiguration.tcl"
- ${CPACK_SOURCE_IGNORE_FILES}
-)
-IF (MACOS)
- SET(CPACK_GENERATOR "Bundle")
-ENDIF()
+ "/build/"
+ "/\\\\.git/"
+ "/\\\\.gitignore"
+ ${CPACK_SOURCE_IGNORE_FILES}
+ )
SET(CPACK_SOURCE_PACKAGE_FILE_NAME "${CMAKE_PROJECT_NAME}-${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
SET(CPACK_DEBSOURCE_PACKAGE_FILE_NAME "${CMAKE_PROJECT_NAME}_${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}.orig")
@@ -233,29 +109,9 @@ INCLUDE(CPack)
#This adds the 'dist' target
ADD_CUSTOM_TARGET(dist COMMAND ${CMAKE_MAKE_PROGRAM} package_source)
-# 'clean' is not (yet) a first class target. However, we need to clean the directories before building the sources:
-IF("${CMAKE_GENERATOR}" MATCHES "Make")
- ADD_CUSTOM_TARGET(make_clean
- COMMAND ${CMAKE_MAKE_PROGRAM} clean
- WORKING_DIRECTORY ${CMAKE_CURRENT_DIR}
- )
- ADD_DEPENDENCIES(dist make_clean)
-
- ADD_CUSTOM_TARGET(make_clean_man
- COMMAND rm -f *.${DOC_COMPRESS_EXT}
- WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}/man
- )
- ADD_DEPENDENCIES(dist make_clean_man)
-ENDIF()
IF(NOT NO_DEP_CHECK)
IF (UNIX)
-#This creates deb packages:
-ADD_CUSTOM_TARGET(origdist COMMAND cp ${CPACK_SOURCE_PACKAGE_FILE_NAME}.tar.gz ../${CPACK_DEBSOURCE_PACKAGE_FILE_NAME}.tar.gz)
-ADD_DEPENDENCIES(origdist dist)
-ADD_CUSTOM_TARGET(deb dpkg-buildpackage -uc -us -i${CPACK_SOURCE_PACKAGE_FILE_NAME}.tar.gz)
-ADD_DEPENDENCIES(deb origdist)
-ADD_DEPENDENCIES(deb info man)
#This creates rpm packages:
ADD_CUSTOM_TARGET(rpm rpmbuild -ta ${CPACK_SOURCE_PACKAGE_FILE_NAME}.tar.gz)
diff --git a/INSTALL.txt b/INSTALL
similarity index 100%
rename from INSTALL.txt
rename to INSTALL
diff --git a/COPYING.txt b/LICENSE
similarity index 99%
rename from COPYING.txt
rename to LICENSE
index 3ad63e0..9cecc1d 100644
--- a/COPYING.txt
+++ b/LICENSE
@@ -1,4 +1,4 @@
- GNU GENERAL PUBLIC LICENSE
+ GNU GENERAL PUBLIC LICENSE
Version 3, 29 June 2007
Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
@@ -631,8 +631,8 @@ to attach them to the start of each source file to most effectively
state the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
- <one line to give the program's name and a brief idea of what it does.>
- Copyright (C) <year> <name of author>
+ {one line to give the program's name and a brief idea of what it does.}
+ Copyright (C) {year} {name of author}
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
@@ -652,7 +652,7 @@ Also add information on how to contact you by electronic and paper mail.
If the program does terminal interaction, make it output a short
notice like this when it starts in an interactive mode:
- <program> Copyright (C) <year> <name of author>
+ {project} Copyright (C) {year} {fullname}
This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
@@ -672,4 +672,3 @@ may consider it more useful to permit linking proprietary applications with
the library. If this is what you want to do, use the GNU Lesser General
Public License instead of this License. But first, please read
<http://www.gnu.org/philosophy/why-not-lgpl.html>.
-
diff --git a/_config.yml b/_config.yml
new file mode 100644
index 0000000..ddeb671
--- /dev/null
+++ b/_config.yml
@@ -0,0 +1 @@
+theme: jekyll-theme-time-machine
\ No newline at end of file
diff --git a/buildBin.sh b/buildBin.sh
new file mode 100755
index 0000000..3a728fc
--- /dev/null
+++ b/buildBin.sh
@@ -0,0 +1,7 @@
+#! /bin/sh
+arch=`uname -m`
+version=0.2.0-1
+
+strip physamp/bppalnoptim
+tar cvzf physamp-${arch}-bin-static-${version}.tar.gz physamp/bppalnoptim
+
diff --git a/doc/CMakeLists.txt b/doc/CMakeLists.txt
deleted file mode 100644
index b89ac1a..0000000
--- a/doc/CMakeLists.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-# CMake script for the physamp package
-# Author: Julien Dutheil
-# Created: 24/10/2014
-
-IF(INFO)
- INSTALL(FILES physamp.info DESTINATION share/info)
-ENDIF(INFO)
diff --git a/docs/CMakeLists.txt b/docs/CMakeLists.txt
new file mode 100644
index 0000000..299479d
--- /dev/null
+++ b/docs/CMakeLists.txt
@@ -0,0 +1,73 @@
+# CMake script for the physamp package
+# Author: Julien Dutheil
+# Created: 24/10/2014
+
+# Builds info, html, pdf doc.
+# Info doc is built and install as part of "all" if makeinfo is found.
+# Html doc is proposed as a "html" optional target if makeinfo is found.
+# Pdf doc is proposed as a "pdf" optional target if makeinfo AND texi2dvi are found.
+
+find_program (MAKEINFO NAMES makeinfo texi2any DOC "makeinfo doc generator program")
+if (NOT MAKEINFO)
+ message (STATUS "makeinfo program not found: 'info' and 'html' target disabled (builds info/html doc)")
+else (NOT MAKEINFO)
+ message (STATUS "Found makeinfo as '${MAKEINFO}': 'info' and 'html' target enabled (builds info/html doc)")
+
+ set (input ${CMAKE_CURRENT_SOURCE_DIR}/physamp.texi)
+
+ # Build and install info page
+ set (output ${CMAKE_CURRENT_BINARY_DIR}/physamp.info)
+ add_custom_command (
+ OUTPUT ${output}
+ COMMAND ${MAKEINFO} --no-split -o ${output} ${input}
+ DEPENDS ${input}
+ COMMENT "Generating info page"
+ VERBATIM
+ )
+
+ # Install, and have "info" built with "all" (install needs the file to be built)
+ if (NOT COMPRESS_BIN)
+ # Install uncompressed info page
+ install (FILES ${output} DESTINATION ${CMAKE_INSTALL_INFODIR})
+ add_custom_target (info ALL DEPENDS ${output})
+ else ()
+ # Compress and install compressed file
+ set (compressed_ouput ${output}.${COMPRESS_EXT})
+ add_custom_command (
+ OUTPUT ${compressed_ouput}
+ COMMAND ${COMPRESS_BIN} ${COMPRESS_ARGS} ${output} > ${compressed_ouput}
+ DEPENDS ${output}
+ COMMENT "Compressing info page"
+ VERBATIM
+ )
+ install (FILES ${compressed_ouput} DESTINATION ${CMAKE_INSTALL_INFODIR})
+ add_custom_target (info ALL DEPENDS ${compressed_ouput})
+ endif ()
+
+ # Also provide a "html" target that builds html doc (not installed, and not part of "all").
+ set (output ${CMAKE_CURRENT_BINARY_DIR}/physamp.html)
+ set (makeinfo-css "http://www.w3.org/StyleSheets/Core/Steely")
+ add_custom_command (
+ OUTPUT ${output}
+ COMMAND ${MAKEINFO} --html --css-ref=${makeinfo-css} --no-split -o ${output} ${input}
+ DEPENDS ${input}
+ COMMENT "Generating html doc"
+ VERBATIM
+ )
+ add_custom_target (html DEPENDS ${output})
+
+ # Provide a "pdf" target that builds pdf doc (not installed, not part of "all").
+ find_program (TEXIDVI NAMES texi2dvi)
+ if (TEXIDVI)
+ message (STATUS "Found texi2dvi: 'pdf' target enabled (builds pdf doc)")
+ set (output ${CMAKE_CURRENT_BINARY_DIR}/physamp.pdf)
+ add_custom_command (
+ OUTPUT ${output}
+ COMMAND ${MAKEINFO} --pdf --Xopt=--clean -o ${output} ${input}
+ DEPENDS ${input}
+ COMMENT "Generating pdf doc"
+ VERBATIM
+ )
+ add_custom_target (pdf DEPENDS ${output})
+ endif ()
+endif ()
diff --git a/docs/_config.yml b/docs/_config.yml
new file mode 100644
index 0000000..c741881
--- /dev/null
+++ b/docs/_config.yml
@@ -0,0 +1 @@
+theme: jekyll-theme-slate
\ No newline at end of file
diff --git a/docs/index.md b/docs/index.md
new file mode 100644
index 0000000..b4c6827
--- /dev/null
+++ b/docs/index.md
@@ -0,0 +1,35 @@
+**PhySamp** is a package dedicated to phylogenetic sampling. It samples a sequence alignment according to its corresponding phylogenetic tree. Current stable version is 0.2.0. Current development version is 1.0.0, and works with the development version of Bio++ (2.3.0).
+
+# Description
+
+The **PhySamp** package currently contains two programs:
+
+* *bppalnoptim* samples a sequence alignment by removing sequences in order to maximize the number of sites suitable for a given analysis. The program has three running modes:
+ * Interactive: the user will be iteratively proposed a set of choices for sequence removal, with their corresponding site gains. The procedure stops when the user does not want to remove more sequences, and the resulting filtered alignment is written.
+ * Automatic: the user enters an a priori criterion for stopping the filtering procedure (for instance a minimum number of sequences to keep).
+ * Diagnostic: this mode allows to plot the trade-off curve, by showing the site gain as a function of the number of removed sequences.
+ The underlying algorithms have been published in *BMC Bioinformatics* (doi: 10.1186/s12859-015-0619-8), please site this reference if you use this program:
+> Dutheil JY1,2, Figuet E3.
+> Optimization of sequence alignments according to the number of sequences vs. number of sites trade-off.
+> BMC Bioinformatics. 2015 Jun 9;16:190.
+
+* *bppphysamp* samples a sequence alignment by removing redundant sequences. It uses a phylogenetic tree or a distance matrix as input, and remove sequences based on their similarity. Available options include
+ * remove sequences which are less than X% divergent
+ * keep the X most divergent sequences
+
+
+# Availability
+
+The *bppalnoptim* and *bppphysamp* programs are command-line driven. You can get pre-compiled executable files for your system for the stable version. Stable and development versions can be compiled on any system with a decent C++ compiler (include at least Linux and MacOS).
+The latest version of **PhySamp** (0.2.0) is based on Bio++ 2.2.0 http://biopp.univ-montp2.fr/, also available on GitHub https://github.com/BioPP. Development version is 1.0.0, and is based on the development version of Bio++.
+
+ * Pre-compiled executables are available here [linux x64](http://biopp.univ-montp2.fr/repos/exe/lin64/physamp) [linux i386](http://biopp.univ-montp2.fr/repos/exe/lin32/physamp)
+ * Source code is available here [here](http://biopp.univ-montp2.fr/repos/sources/physamp/)
+ * Git repository address is https://github.com/jydu/physamp
+
+The programs depend on the Bio++ libraries. Pre-compiled executables are statically linked, and therefore already include all required code from the libraries. Pre-compiled packages will ask for all required dependencies, which can be found in the same download directory. For compiling the programs yourself, from the downloaded sources or from the git repository, please follow the instructions from the Bio++ website http://biopp.univ-montp2.fr/wiki/index.php/Installation.
+
+# Usage
+
+Several example data sets are distributed along with the source code of the package. A reference manual is also available [here](http://biopp.univ-montp2.fr/manual/html/physamp/), or can be downloaded as [PDF](http://biopp.univ-montp2.fr/manual/pdf/physamp). Questions can be asked on the dedicated forum: [here](https://groups.google.com/forum/?hl=en#!forum/physamp).
+
diff --git a/doc/physamp.texi b/docs/physamp.texi
similarity index 79%
rename from doc/physamp.texi
rename to docs/physamp.texi
index b29b651..f6b7656 100644
--- a/doc/physamp.texi
+++ b/docs/physamp.texi
@@ -1,7 +1,7 @@
\input texinfo @c -*-texinfo-*-
@c %**start of header
@setfilename physamp.info
- at settitle PhySamp Manual 0.2.0
+ at settitle PhySamp Manual 1.0.1
@documentencoding UTF-8
@afourpaper
@dircategory Science Biology Genetics
@@ -12,9 +12,9 @@
@copying
-This is the manual of the PhySamp package, version 0.2.0.
+This is the manual of the PhySamp package, version 1.0.1.
-Copyright @copyright{} 2015 Julien Y. Dutheil
+Copyright @copyright{} 2017 Julien Y. Dutheil
@end copying
@titlepage
@@ -36,11 +36,11 @@ Copyright @copyright{} 2015 Julien Y. Dutheil
@top The PhySamp Manual
@insertcopying
- at end ifnottex
@menu
* Introduction::
* bppalnoptim::
+* bppphysamp::
@detailmenu
--- The Detailed Node Listing ---
@@ -50,9 +50,15 @@ Introduction
* Description::
* Run::
+Output files
+
+* bppphysamp::
+
@end detailmenu
@end menu
+ at end ifnottex
+
@c ------------------------------------------------------------------------------------------------------------------
@node Introduction, bppalnoptim, Top, Top
@@ -74,13 +80,16 @@ Note that several detailed examples are provided along with the source code of t
@node Description, Run, Introduction, Introduction
@section Description of the programs
-The PhySamp package currently contains one program:
+The PhySamp package currently contains two programs:
@table @samp
@item bppalnoptim
optimize a sequence alignment by removing sequences in order to maximize the number of sites with a minimal coverage.
+ at item bppphysamp
+optimize a sequence alignment by removing similar sequences.
+
@end table
@c ------------------------------------------------------------------------------------------------------------------
@@ -92,7 +101,7 @@ Programs in the PhySamp package follow the @samp{BppO} syntax. They are command
@c ------------------------------------------------------------------------------------------------------------------
- at node bppalnoptim, , Introduction, Top
+ at node bppalnoptim, bppphysamp, Introduction, Top
@chapter Sampling alignment to maximize the number of sites with minimum coverage
The option files for @sc{bppalnoptim} fall in three sections: input of alignment and guide tree, filter parameters and output files.
@@ -216,6 +225,43 @@ Optionally, the sampled tree can also be written using options from the BppO syn
@c ------------------------------------------------------------------------------------------------------------------
+ at menu
+* bppphysamp::
+ at end menu
+
+ at node bppphysamp, , bppalnoptim, Top
+ at chapter Sampling alignment to remove redundant sequences
+
+The Bio++ Phylogenetic Sampler samples sequences from a file according to phylogenetic information.
+The goal is to clean a big data set by removing redundant sequences, bringing only few additional information for evolutionary analyses.
+
+The BppPhySamp programs uses the common options for setting the alphabet, loading the sequences (@ref{Sequences, , , bppsuite, @uref{http://biopp.univ-montp2.fr/manual/html/bppsuite/2.2.0/Sequences.html#Sequences}}) and (@ref{Tree, , , bppsuite, @uref{http://biopp.univ-montp2.fr/manual/html/bppsuite/2.2.0/Tree.html#Tree}}) and writing the resulting data set (@ref{WritingSequences, , , bppsuite, @uref{http://biopp.univ-montp2.fr/manual/html/bppsuite/2.2.0/WritingSequences.html#WritingSequ [...]
+
+ at table @command
+
+ at item input.method = @{tree|matrix@}
+The method to provide phylogenetic information, either by a tree or a matrix.
+If the @option{tree} option is used, then the options for reading trees are used (@ref{Tree, , , bppsuite, @uref{http://biopp.univ-montp2.fr/manual/html/bppsuite/2.2.0/Tree.html#Tree}}).
+
+ at item input.matrix = @{path@} [[input.method = matrix]]
+The input matrix file.
+
+ at item deletion_method = @{random|threshold|sample@}
+Method to use to remove sequence.
+
+ at item threshold = @{float>0@} [[deletion_method = threshold ]]
+The minimum distance separating two sequences in the sampled data set.
+Any sequences closer than this threshold in the original data set will be confronted so that only one is kept.
+
+ at item sample_size = @{int>0@} [[deletion_method = sample|random ]]
+The number of sequences to keep in the final data set.
+
+ at item choice_criterion = @{length|length.complete|random@}
+How to chose between closely related sequences? @option{length} takes the longest (maximum number of non-gap positions), @option{length.complete} takes the sequence with the maximum number of fully resolved positions and @option{random} picks one sequence at random.
+ at end table
+
+ at c ------------------------------------------------------------------------------------------------------------------
+
@c end of document
@c @node Index, , Reference, Top
diff --git a/examples/LSU/LSU.dnd b/examples/LSU/LSU.dnd
new file mode 100644
index 0000000..0b3975d
--- /dev/null
+++ b/examples/LSU/LSU.dnd
@@ -0,0 +1 @@
+((((((((Leptospira:0.211857,((((Thermus:0.146936,(Thermotoga:0.107931,Aquifex:0.260721):0.0337762):0.0847738,Synechocystis:0.238263):0.0184171,((((Mycobacterium at smegma:0.0152015,(Mycobacterium:0.00677954,Mycobacterium at leprae:0.0189232):0.0143038):0.0519384,Rhodococcus at erythrop:0.0241529):0.0377471,(Frankia at sp:0.0326741,(((Thermomonospora:0.0376728,Microbispora:0.0431383):0.0171155,Thermomonospora at chro:0.0276944):0.0409298,((Streptomyces at coelico:0.012891,Streptomyces at griseus:0.0125734):0. [...]
diff --git a/examples/LSU/LSU.phy b/examples/LSU/LSU.phy
new file mode 100644
index 0000000..64ce928
--- /dev/null
+++ b/examples/LSU/LSU.phy
@@ -0,0 +1,1976 @@
+79 2353
+Bradyrhizobium TGCTTAAGGTGTTCGGTGGATGCCTTGGCGCTGAGGCGATGAAGGACGTGCTACCTGCGATAAGCCGTGGGGAGCTGCGAAAAGCTTGATCCATGGATTT
+ CCGAATGGAGACATCAGCAACCCAGGGACTGAAACATCTAAGTACCTGGGGAAAGGACATCAACGAGACTCCGTTAGTAGTGGCGAGCGAACGCGGACCA
+ GGCCATAACAATCGGAACCGGTAGGAAACCGGGCCCAGAGGTGAAGCCCCGTAGAAATCCAGAGTAGGCGGGACACGTGAAATCCTGTCTGAACGCGGGG
+ GGACCACCCTCCAAGCCTAAGTACTCTCAGCGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGGACACCT
+ ACAACAGATGGAGCCCCGGGTGACATGTACCTTTTGTATTATGGGCCAGCGACTTAATTTAACGAGCAGCTTAAGATGGTAGGCGCACGGAGCGGTCTGA
+ ATAGGGCGAAGTTCGTTGTATTAGACCCAAACCAGTGATCTAGCCATGAGCAGTTGAAGGTGAGTAACACTCACTGGAGGACCGAAGGTGCCTGTTGAAA
+ AAGGCCCGATGACTGTGTTAGGGGTGAAAGGCCAATCAAACTGGAAATAGCTGGTCTCCGCGAAAGATATTTAGGTAGCGCCTCGGATACCTCAGGGGTA
+ GAGCACTGGATGGGCTAGGGATCTCTAAACCCAACCAAACTCCGAATACCTGTATCCGGGAGTCACACGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAA
+ CAACCCGGACCTACAGCTAAGCCCCTAATCTGGCTAAGTGGAAAGGATGTGAAATCCCAAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGGGTTTCCCGAAGATGTCGGCTAAGCCACGAGCCGAAGCTTAGGGTCAGCGGTAGCGGAGCGTTCTGTACCTGCAAGGGG
+ ACTCGTGAAGCGCCTGGAGGTATCAGAAGTGCGAATGTGGCATGAGTAACGAAACACTGTGAAAGACAGTGTCGCCGAAAGTCCAAGGTTCCTGCGTAAG
+ TTAATCTTCGCAGGGTTAGCCGGTCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAATGCAGGAATATTTGCAGCGTGACGAATCCCGTGGTTGTCGACA
+ CTGGTTGCTTCGGTTCCAGGAAATACACCGTACCAAACCGACACAGGTGGACGGTAGAGTATACCAAGGCGTTGAGAGAACTATGTTGAAGGAACTCGGC
+ AATTTACCTCCGTAACTTCGGGATAAGGAGGCCCATCAATGGGGCACAGACCGGGGGGGAACTGTTTAACAAAAACACAGGCTCTGCGAAATCGCAAGAT
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGAGAGGTCAAGCTTGAATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGACTTCCCCGCTGTCTCCAACATAGACTCAGTGAAATTGAATTCCC
+ CGTGAAGATCGGGGTTCCTGCGGTCAGACGGAAGACCCCGGCACCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGTTTGTGTAGAATAGGTGGTAGG
+ CTTTGAAGCCGTGGCGCCAGCCATGGTGGAGCCAAATGAAATACCACCCTAATGGTTATGATATCTAACCGCGAGACCGGGACAGCGCATGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCGAAGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTATAATGGCATAAGCCTGCC
+ TGACTGCGAGATCTACGATGAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTCCCGGTGGATGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATGACGCCCAAGAGTCCATATCGACGGCGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCAAGGGTTCGCTG
+ TTCGCCGATAAAGTGGTACGTGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTTGGAATTTGAGAGGATTGCCCCTAGTA
+ CGAGAGGACCGGGGTGAACGTACTCTGGTGGAGCTGTTGTCGCGCCAGCGCATGCAGCATAGCTATGTCGGCGGGATAACCGCTGAAACATCTAAGCGGA
+ AACCCCCTAAAAGAGCATTCCCAGAACCGTGGAAGACCACACGTGATGGCCGG
+
+Bacillus at licheniform TTAGAAAGGCGCACGGTGGATGCCTTGGCACTAAGCCGATGAAGGACGGGACGACACCGATATGCTTCGGGGAGCTGTAAGAAGCTTGATCCGGAGATTT
+ CCGAATGTCCTCATGAGCAACCCGGGGACTGAAACATCTAAGTACCCGGGGAAGAGAAAGCAAAGCGATTCCCTGAGTAGCGGCGAGCAAAACGGGAACA
+ GCCCGGAGGTAGATGAAGGGTCTGGAAAGCCCGCCTAGGGGTAAAGCCCTGTATCAACCCTGAGTCGGCGGAACACGTGAAATTCCGTCGGAATCCGGGA
+ GGACCATCTCCCAAGGCTAAATACTCCTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAACCGTGTGCCT
+ ACAATAGTCAGAGCCCAGGGTGATGGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGATCCCGTGCAGGTTAAGAAAGGAGCCGCAGCGAGCGGTCTGA
+ ATAGGGCGGAGTACGTGGTCGTAGACCCAAACCGGTGATCTACCCATGTCCAGGTGAAGTTCAGTAACACTGAATGGAGGCCCGAACACGCACGTTGAAA
+ AGTGCGGGATGAGTGTGGTAGGGGTGAAATGCCAATCGAACCTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCCTCAAGAGATCTTGAGGTA
+ GAGCACTGATTGGACTAGGCCTCGGTAAATTCAGTCAAACTCCGAATGCCAATACTTGGGAGTCAGACGCGAGTGATAAGATCCGTAGTCGAAAGGGAAA
+ CAGCCCAGACCGCCAGCTAAGTCCCAAAGAACGTTAAGTGGAAAGGATGTGAGTTGCTTAGACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTGACTCCCGAAAATGTCGGCTAAACGTATCACCGAAGCTGCGGACTGGTGGTAGGAGAGCGTTCTAAGGCTGTAAGCGA
+ GACCGGAAGACTCGTGGAGCGCTTAGAAGTGAGAATGCGGTATGAGTAGCGAAGAGGGGTGAGAATCCCCTCCACCGAATGCCTAAGGTTCCTGAGGAAG
+ CTCGTCCGCTCAGGGTTAGTCGGGACCTAAGCCGAGGCCGAACGTAGGCGATGGACAACAGGTGATATTCTGTACGGGACGCAGAGGATAGGGTACGCGT
+ TGGCGCGTCCTCCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGGCAGGAGAGAATCCTAAGGTGTCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCAGGGCCGCAGTGAATGGCCCAGGACTGTTTAGCAAAAACACAGGCTCTGCGAAGCCGTAAGGC
+ AAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGCGCTTAAGTGCGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGCAACGATCTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTATAGTACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCGGGAGCTTTACTGCAGCCTGATATTGAATGTTGGTACAGCTTGTACAGGATAGGTAGGAGC
+ CTTGGAAACCGGAGCGCCAGCTTCGGTGGAGGCTCGTGGGATACTACCCTGGCTGTATTGCCTTCTAACCCGCATAGGGAGACAGTGTCAGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCCCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGCAGAGTGTAAAGGCACAAGGGAGCT
+ TGACTGCGAGACCTACAGTGAGCAGGGACGAAAGGGGCTTAGTGATCCGGTGGTTCCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCCGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTCCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACGCACGCTGGTGTACCAGTTGTTCTGCCAAGGCACGCTGGGTAGCTATGTCGGCGGGATAAGTGCTGAAACATCTAAGCATA
+ AGCCCCCTAAGAGAGATTTCCCAGATCCCTGAAAGATGATAGGTGATGGTCTG
+
+Rickettsia TAAATAAGGCATTTGGTGGATGCCTTGGCACTAAGGCGATGAAGGACGTGATACCTGCGATAAGCTTCGGGGAGTTGCGAAAAACTTGATCCGAAGATTT
+ CCGAATATTGACATGAGCAACCCAGCGACTGAAATATCTAAGTAGCTGGGGAAAGGACATCAACGAGACTCCGTTAGTAGTGACGAGCGAACGCGGATCA
+ GGCCGCTATAACTAAAACAACATGGAAAGTTGACCTAGAGGTGAAGTCCCGTAAGAAACCTGAGTAGGCGGGACACGTGAAATCCTGTTTGAACATAGGG
+ GGACCACCCTCTAAGCCTAAGTACTCCTAGTGACCGATAGTGAAAAGTACCGTGAGGAAAGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCAAATGCTT
+ ACAACAGTCGGAGCAAATTGTGACGGGTACCTTTTGTATAATGGGTCAGCGACTTAGTTTATCTAGCAGCTTAAGTTGGTAGGCGTAGCGAGCGGTCTGA
+ ATAGGGCGTAGTTAGATGAATTAGACCCAAACCGGTGATCTAGCCATGGCCAGTTGAAAGCGGATAAAATCCACTGAAGGACCGAACACTACTGTTGAAA
+ AAGTAGGGATGAGTGTGTTAGGGGTGAAAGGCCAATCAAACTCGATATAGCTGGTCTCCGCGAAATCTATTTAGGTAGAGCGTTATATACCATCGAGGTA
+ GAGCACTGAATGAGCTAGGGTCCACTAAACTCAATCAAACTCCGAATGTCGGTACATAGCAGACAGACATGGGTGCTAAGGTCCATAGTCGAGAGGGAAA
+ AAGCCCAGATCGCCATCTAAGTCCCTAAACTGACTAAGTGTAAAGGATGTAGAAGACCAAAACAACTAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTAGTCTAGTTTTCTCCAACAATGTCGGCTAAGTCATGTACCGAAGATGCGGGTTTATGGTAGCGGAGCGTTCCGTACCTGCAAGGTG
+ AACCGTAAGTTTGCTGGAGGTATCGGAAGTGAGAATGTGACATAAGTAGCGAAAGAATGTGAGAAACATTCTCGCCGAAAGTCCAAGGTTCTTGCGTAAG
+ TTAATCTGCGCAAGGTTAGTCGGCCCCTAAGATGAGGCTGAACGTAATCGATGGGAATCAGGTAATATTCTGAACGTGACGAAAATAGTAATTGTCAGTA
+ TTGATTGCGGTTTTTCCAGGAAATACACCGTACCAAACCGACACAGGTGGACGGTAGAGTATACCAAGGCGTTGAGAGAACGATGCTGAAGGAACTAGGC
+ AAATTGCATCTGTAACTTCGGAAGAAAGATGACCTGCAGAGTGGCACAAGCTGGGGGAGGACTGTTTATTAAAAACACAGGCTCTGCAAAGTCAATAGAC
+ ATGTATAGGGTCTGACGCCTGCCCAGTGCTGGAAGATTAAAAGGAGGGGTCAAGTCTGAATTGAAGTCCCAGTGAACGGCGGCCGTAACTATGACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAATGGCGTAACGATTTCCCCACTGTCTCCAGTATCGACTCAGCGAAATTGAATTCTC
+ CGTGAAGATCGGAGTTCCCGCGGTCAGACGGAAGACCCCGGAACCTTTACTATAGCTTTGCACTGGTGTTAGGAATCAGATGTGCAGGATAGGTGGGAGA
+ CTACGAAGCGAAGGCGTCAGCCTTTGTGGAGTCCCCTGAGATACCACCCTTTTGGTGCTTACATCTAACCGAGATTCCGAGACAATGCATGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGATGGTTAGCTCAGGTTGGTCGGAAATCAACTTTAGAGTGCAATGGCATAAGCTAGCC
+ TGACTGCGAGTCTGACAGAGAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTTCCGGTGGAAGGGCCATCGCTCAACGAATAAAGGTACTCCGGGATA
+ ACAGGCTGATGATTTCCAAGCGTCCATAGCGACGAAATGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCAAGGGTTCGCTG
+ TTCGCCGATAAAGTGGTACGTGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGAAGTTGAGAGGACTGCCTTTAGTA
+ CGAGAGGACCGAGGTGGACGTACCCTGGTGGACCAGTTGTCGTGCCAACGCAAGCTGGGTAGCTAAGTCGGAGGGATAACTGCTGAATCATCTAAGCAGA
+ AACCCCCTAAAATAGACTTCCCAGAGCCGTGGAAGACCACACGTGATGGTCGG
+
+Lactobacillus TAGAAAAGGCGCACGGTGAATGCCTAGGCACTAAGCCGATGAAGGACGTAACGACTGCGAAAAGCTTCGGGGAGCTGTAAGAAGCTAGATCCGGAGATGT
+ CCGAATGTTGGTTAAAGAAACGCAGCGACTGAAACATCTAAGTAGCTGCGGAAGAGAAAGAAAATCGATTTCCTTAGTAGCGGCGAGCGAAGAGGAAAGA
+ GCCTGGAGATAGCAGAACTACCTGGGAAGTAGGCCGAGAGGTGAAGCCCCGTAGCAATCCTGAGTGGGCGGAACACGAGGAATTCCGTTTGAATCCGCGA
+ GGACCATCTCGCAAGGCTAAATACTACTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAATAGTCAGAGCACAGTGTAATGGGTGCCTTTTGTAGAATGAACCGGCGAGTTATGCTGTGCAGCGGGTTAAGAAAGGAGCCGGAGCGAGCGGTCTGA
+ AGAGGGCGAAGTTGTGCGGTGTAGACCCAAACCAGTGACCTACCCATGACCAGTTGAAGGTGCGTAAAACGCACTGGAGGACCGAACACGTAAGTTAAAA
+ ATTGCGGGATGAGTGTGGTAGCGGTGAAATTCCAAACGAACTTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCCTCGTGAGGTAATGAGGTA
+ GAGCTCTGTTTGGACAAGGCCGCGGTAAATCCAGATAAACTGCGAATTCCAGCACACGGGAGTCAGACGCGAGTGATAAGATCCGTAGTCGAAAGGGAAA
+ CAGCCCAGATCACCAGTTAAGTCCCCAAACATGCTAAGTGGAAAGGATGTGAGTTGCGTAGACAACTAGGACGTTGCTCAGAAGCAGCCTTCAAAGAGTG
+ CGTAATAGCTCACTAGTCGAGTGGCTCCCGAAAATTTCGGCTAAGCATAGTACCGAAACTGTGGACAAGTGGTAGGAGAGCGTTCTAAGGCGGAAAGTCT
+ GATCGAGAGACAGATGGAGCGCTTAGAAGTGAGAATGCGGTATGAGTAGCGAAGATAGGTAAGAATCCTATCCGCCGGAAGACTAAGGTTCCTGGGGCAG
+ CTCGTCCGCCCAGGGTAAGTCGGGACCTAAGGCAAGGCCGAACGTAACCGATGGATAACAGGAGAGATTCTGTACGGGACGCAGAGGCGAAGCACCATGC
+ TGGCATGTGCACCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGTCAGTGGAGAACACTAAGGTGGCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTGAAGACGCCGCAGAGAATGGCCCAAAACTGTTTATCAAAAACACAGGCTCTGCAAAGTCGTAAGAC
+ ACGTATAGGGGCTGACACCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGCTTCGGTACGAATTTAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAGGTGTAATGATTTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTATAATACC
+ CGTGAAGATCGGGTTACCCGCGACAGGACGGAAGACCCCAGGAGCTTCACTGTAGCTTGATATTGAGTATCTGTTAAACATGTACAGGATAGGTAGGAGC
+ CAGAGAAGGTAGGACGCTAGTCTTACTGGAGGCATGTGGGATACTACCCTTGTTTGATGGTGCTCTAACCTAGAGCAGGGGACAGTGTCAGGTAGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGTGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGCAGAGTGTAAAGGTATAAGGGAGCT
+ TGACTGCGAGAGAGACACTGAGCAGGGACGAAAGGGACTTAGTGATCTGGTGGTACCGATGGAAGGGCCATCACTCAACGGATAAAGCTACCCTGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGAAGTTGGTCCAAGGGTTGGATG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGTGGGCGCAGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACGCACGCTGGTGTACCAGTTGTCTTGCCAAAGCACGCTGGGTAGCTATGTCGGAGGGATAAGCGCTGAAACATCTAAGTGCA
+ AGCCCCCTAAGAGAGATTTCCAAGACACCTCAGAGACGATAGGTGATGGCTGG
+
+Aquifex TTAGTAAGGCCCGGGGTGGATGCCTCGGCTCCCAGCCGATGAAGGGCGTGCAAACTGCGATAAGCCGGGTGGAGGCGCAAGAGCCGTGAGGCCCGGATGC
+ CCGAATGTCCTTCGGAGGGACCGGCCGAGCAAAACCTTTTAGTAGGCCGGGAAAGGAAATCAATGAGACGCCCTGAGTAGCGGCGAGCGAAAGGGGCTCA
+ GCCCGGACCTAGCCGAAGTCCCTGGAATGGGCGCCTAGAGGTGAAGCCCCGTAGCAAGCCCAAGTCCGCGGCCCACGTGAAAGGTCGCGGGAATCCGGGG
+ GGACCACCCTCCAAGGCTAAGTACTCCGGGAGACCGATAGCGCATAGTACCGTGAGGAAAGGTGAAAAGACCTGAGTGAAAAGACTGAAACCCCGGGTCC
+ ACAACAGTGGAAGGGGTCCCCGACTGGTGCCTTTTGCAGAATGAGCCGGGGAGTTGTCCTCAGGGGCGGGCTAAGTCGGAAGCCGTAGCGAGCGGTCCGA
+ ATAGGGCGAAGTCCCTGGGGGCAGACGCAAGCCGGCGATCTACCCTTGCCCTGGTGAAGGCCGGTAACACCGGCTGGAGGCCCTAAGGTCGGTGCTGCAA
+ AACCGCCCGTGAGTGAGGTAGCGGTGAAAAGCCAATCGCGCCCGGGATAGCTCGTCTCCCCGAAATGCATCGAAGTGCAGCGTCGCCCCTTCCCGAGGTA
+ GAGCACTGCTGGGGCTAGCCCGAGGGAAACCCCGGCAAACTCCGAATGCCGGAGGGCGGCAGTGAGTCTCGGGGGATAAGCTCCGAGGACAAGAGGGAAA
+ CAGCCCAGACCGCCGGCTAAGCCCCAAAGCGGGCTAAGTGGAAAGGAAGTCCCGTCCTAAGACAGCCGGGAGGTTGCTTAGAGGCAGCCTTTAAACAGTG
+ CGTAACAGCTGACCGGTCGAGGGCGGGCCGAAAATTTCGGCTAAGCCCGGCGCCGAAGCCGCGGGTCCGCGGTAGGGGAGCGTTCCCAGGCGCTAAGCCA
+ AGCCGTGAGCAGGGTGGAGCGCTGGGAAGTGAGAATCCGGCATGAGTAGGAGAGGCAGGTGAGAAACCTGCCCGCCGGAAGCCCAAGGTTCGGCGGCAAG
+ GAAATCAGCCGCCGGTTAGCCGGGCCCTAAGGCGAGGCCGAGCGTAGCCGATGGGAAGCGGGCAACATTCCGCGCGTGACGCAGAGGCTAGGCCGGCCCA
+ TGGGGGTGGCCCCTGCCAAGAAACACCCCGTACCAAACCGACACAGGTGGGCGGGTTAGGAGCCTAAGGCGTCGGGGGAACTCCCCTCAAGGAACTCGGC
+ AAGTTGGCCCCGTACCTTCGGAAGAAGGGGTGCCCGCGGGGTCGCAGTGACAGGCGGGCGACTGTTTACCAAAAACACAGGCTACGCAAACCCGAAAGGG
+ ATGTATGTGGTCTGAAGCCTGGCCAGTGCCCGAAGGTGAAGGCCCCCGGTATGGTGGGGGCTGAAGCCCGGGTAAACGCCGGCCGTAACTATGACGGTCC
+ TAAGGTAGCGAAATTCCTTGCCGGGTAAGTTCCGGCCTGCATGAATGGCCCAACGAGTGCCGCACTGTCTCGAGGGGAGTCCCGCCGAAATTGTAATGCC
+ GGTCAAGATCCGGCTACCCGCGGCAGGACGGAAGACCCCGGAAGCTTCACTGCAGCCTGGCATTGGGCTCTGGCCTGTCCTGCGCAGGATAGGTGGGAGC
+ CTGGGAAGCCCCCGCTCCGGCGGGGGTGGAGGCCCGTGAGATACCACCCTGGACAGGCTGGGTCCTAACCCAGATGCGGGGACAGTGCTAGGTGGGCAGT
+ TTAGCTGGGGCGGCTGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTCCCCTCAGGCGGGTCGGAAATCCGCCGTAGAGTGCAAGGGCATAAGGGGGCC
+ TGACTGTGAGGCCGACGGCGAGCAGCCGCGAAAGGGGCCTAGTGACCCACCCGCTCCAGTGGGAGGGCGGGTGATCAGCGGATAAAGCTACTCCGGGATA
+ ACAGGCTAATCGCCCCCGAGAGCCCACATCGACGGGGCGTTTGGTACCTCGATGTCGGCTCCCCCCATCCTGGGGCTGAAGCAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGGGGGACGCGAGCTGGGTTCAGAACGTGCGAGACAGTTCGGTCCCTATCCGCCGCGGGCGCAGGAGCTTGAGGGGGCCGTCCCTAGTA
+ CGAGAGGACCGGGACGGGGCAGGACTGGTGTACCGGTTGTCCCTGGAGGGCACGCCGGGTAGCCATCCGCTCGGGATAAGCGCTGAAACATCTAAGCGCA
+ AGCCCCCCAAGAAAGGGCTCCCAGGGCCCCGGGAGACTACGGGTGATGGCCGC
+
+Haemophilus TGACTAAGGTACAAGGTGGATGCCTTGGCAATCAGGCGAAGAAGGACGTGCTAACTGCGAAAAGCTTGGATGAGTCGATAAAGGCTTTAATCCAAGATAT
+ CCGAATGTCATCATGAGCAACCGGGAGACTGAAACATCTAAGTACCCCGGGAAAAGAAATCAACGAGATTTCGTCAGTAGCGGCGAGCGAAAGCGAAAGA
+ GCCAAAGGTGAGGAGAATGTGTTGGGAACACAATCAAGAGGTGAAATCCCGTACTAAACGAAAGTGGGCGGGACACGTGATATCCTGTTTGAAGAAGGGG
+ GGCCCATCCTCCAAGGCTAAATACTCTGATTGACCGATAGTGAACAGTACTGTGAAGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCTTGTACGT
+ ACAACAGTGGGAGCGAATTGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATATTTTGTAGCGGGTTAACAAGGGAGCCGAAGGGACCGGTCTTA
+ ACTGGGCGTAGTTGCAAGGTATAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTTGGTAACACTAACTGGAGGACCGAAGACTAATGTTGAAA
+ AATTACGGATGACTGTGCTGGGGGTGAAAGGCCAATCAAACCGGAGATAGCTGGTCTCCCCGAAATCTATTTAGGTAGAGCCTTGAGCACCTTTGGGGTA
+ GAGCACTGTTTCGGCTAGGGCTCGCTAACCCGATGCAAACTACGAATACCAATGCTCAGGAGACACACGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCCAAGCATATTAAGTGGAAACGAAGTGGAAGGCTTAGACAGCTAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTAGTCGAGTCGGCCCGGAAGATGTCGGCTAAATATAGCACCGAAGCTGCGGCATTTGGGTAGGGGAGCGTTGTGTACGGAAAAGGTT
+ CATCGAGAGTGGGCTGGACGTATCACAAGTGCGAATGTGACATAAGTAACGAAAACGGGTGAAAAACCCGTTCGCCGGAAGACCAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGTCGGCTCCTAAGGCGAGGCTGAACGTAGTCGATGGGAAACAGGTAATATTCTGTACGGGACGGAGAGGTTAGGTTACGCAT
+ TGGTGCGAACTCCTTCCAGGAAAAGCACCGTACTAAACCGACACAGGTGGTCGGTAGAGAATACTCAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATAGCACCGTAACTTCGGGAGAAGGTGCGCCGGTAACGTCGAAGATACCGCTGGTGAACTGTTTATTAAAAACACAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGATGCCTGCCCGGTGCTGGAAGGTTAATTGATGGTGTAAAGACCTGATCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCATAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGC
+ CGTGAAGATCGGTGTACCCGCGGCTAGACGGAAGACCCCGGAACCTTTACTATAGCTTGACACTGAACATTGAATTTTGATGTGTAGGATAGGTGGGAGC
+ CTTTGAAGCAGTGACGCCAGTCATTGTGGAGGCACCTGAAATACCACCCTTTAACGTTTGTGTTCTAACGAAGAATCTCGGACAGTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTTGCTAATCACGGTCGGACATCGTGAGGTTAGTGCAATGGTATAAGCAAGCT
+ TAACTGCGAGACAGACAGTGAGCAGGTACGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGTAGGATGTTGATTGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGCATACTGGTGTTCCGGTTGTGTCGCCAGACCATGCCGGGTAGCTAAATCGGAGAGATAAGTGCTGAAACATCTAAGCACA
+ AACTTCCAGAGAGAGTCATCCCAGGGTTGTTGTAGACTACACGTGATGGTTGG
+
+Escherichia at coli CGACTAAGGTACACGGTGGATGCCCTGGCAGTCAGGCGATGAAGGACGTGCTAACTGCGATAAGCGTCGGTAAGGTGATATAACCTTTAACCGGCGATTT
+ CCGAATGTCACCATGAGCGACCGGGGGACTGAAACATCTAAGTACCCCGGGAAAAGAAATCAACGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGCA
+ GCCCAGCGTTAGTGGAAGCGTCTGGAAAGCGCGCGTACAGGTGAAGCCCCGTAACAAAGATGAGTGGGCGGGACACGTGGTATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTGGGAGCACAGTGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAGGTTAACAAGGGAGCCGAAGGGACCGGTCTTA
+ ACTGGGCGAAGTTGCAGGGTATAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTTGGTAACACTAACTGGAGGACCGAAGACTAATGTTGAAA
+ AATTACGGATGACTGTGCTGGGGGTGAAAGGCCAATCAAACCGGAGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGCATCTCCGGGGTA
+ GAGCACTGTTTCGGCAAGGGTTCACTAACCCGATGCAAACTGCGAATACCGGTGCACGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCAAAGCTGGTTAAGTGGAAACGATGTGGAAGGCCCAGACAGCCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCGAGTCGGCCCGGAAGATGTCGGCTAAACCATGCACCGAAGCTGCGGCATATGGGTAGGGGAGCGTTCTGTACCTGCAAGGTG
+ TGCTGTGAGCATGCTGGAGGTATCAGAAGTGCGAATGTGACATAAGTAACGAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAAACAGGTAATATTCTGTACGGGACGGAGAGGCTATGTTGCCGGA
+ CGGCCGGAACACCTTCCAGGAAAAGCATCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGATTACGTCGAAGATACCGCTGGTGAACTGTTTATTAAAAACACAGCCTGTGCAAACACGAAAGTG
+ ACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTCAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAACTCGC
+ TGTGAAGATCAGTGTACCCGCGGCAAGACGGAAGACCCCGGAACCTTTACTATAGCTTGACACTGAACATTGAGCCTTGATGTGTAGGATAGGTGGGAGG
+ CTTAGAAGTGTGGACGCCAGTCTGCATGGAGCCACCTGAAATACCACCCTTTAATGTTTGTGTTCTAACGTTGATTTGCGGACAGTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCT
+ TGACTGCGAGCGTGACGCGGAGCAGGTGCGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGCCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGACTGAGGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGCATACTGGTGTTCGGGTTGTCATGCCAATGCATGCCCGGTAGCTAAATCGGAGAGATAAGTGCTGAAACATCTAAGCACA
+ AACTTCCCGAGAGAGTTCTCCCAGGAACGTTGAAGACGACACGTGATGGCCGG
+
+Ralstonia at solanacear CGAATAAGGCATGTGGTGGATGCCTTGGCGATCAGGCGATGAAGGACGCAGTAGTTGCGAAAAGCTGCGGGGAGCTGCAAAGAGCTTGATCCGCAGATGT
+ CCGAATGTCTTCATGAGCGACGCAGTGACTGAAACATCTAAGTAGCTGCGGAAAAGAAATCAACGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATCA
+ GCCTGTAGTTAGCAAAACGGAATGGAAATCCGGCCTAGTGGTGAAGCCCCGTAGCAAACGAAAGTGGGCGGGACACGTGAAATCCTGTCTGAAGATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGATCGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGTCTGAAACCGCATGCAT
+ ACAACAGTCGGAGCCTAGGGTGACGGGTACCTTTTGTATAATGGGTCAGCGACTTACATTCAGTGGCAGCTTAACATGGAAGGCGTAGCGAGCGGTCCGA
+ ATAGGGCGCAGTCGCTGGGTGTAGACCCAAACCAGTGATCTATCCATGGCCAGTTGAAGGTGCGTAACACGTACTGGAGGACCGAACACTAACGTTGAAA
+ AGTTAGGGATGAGTGTGATAGGGGTGAAAGGCTAAACAAACTTGAAATAGCTGGTCTCTCCGAAAACTATTTAGGTAGTGCCTCGTGCACCTTCGGGGTA
+ GAGCACTGTCATGGTTGGGGTTGATTACGCCATAGCAAACTCCGAATACCGATGCACGGGAGACAGACTCGGGTGCTAACGTCCGGTGTCAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCTAAGATGGCTAAGTGGAAACGAAGTGGAAGGCTAAAACAGTCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGATCGAGTCGTCCCGGAAGATGTCGGCTAAGCCAGTCACCGAAGCTGCGGATTAATGGTAGGAGAGCGTTCTGTACCTGTAAGGTG
+ TCTTGTGAGGATGCTGGAGGTATCAGAAGTGCGAATGTGACATGAGTAGCGAAAGGGGGTGAAAGGCCCCCTCGCCGTAAGCCCAAGGTTCCTACGCAAG
+ TTCATCGGCGTAGGGTGAGTCGGCCCCTAAGGCGAGGCAGAACGTAGCTGATGGGAAGCAGGTAATATTCTGCACGGGACGGATGCGGAAGGTTGCCGGT
+ TGGCCGGAATTAGTTCCAAGAAAAGCACCGTACCAAACCGACACAGGTGGGCAGATGAGTATTCTAAGGCGTTGAGAGAACTCGGGAGAAGGAACTCGGC
+ AAATTGGTACCGTAACTTCGGGATAAGGTACGCCCTCGAGGTTGCAATAAAAGGTGGTGGACTGTTTAATAAAAACACAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGATTAAATGATGGGGTCAAGTCTTGATTGAAGTCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCCGAGACTCAGCGAAGTTGAAGTGTT
+ TGTGATGATCAATCTCCCCGCGGCTAGACGGAAGACCCCAGAACCTTTACTGTAGCTTTGCATTGGACTTTGAACCGATCTGTGTAGGATAGGTGGGAGG
+ CTTTGAAACCGGGACGCTAGTTTCGGTGGAGCCTCCTGAAATACCACCCTGGTTTGTTTGGGTTCTAACCTTGATTCGGGGACAGTGCATGGTAGGCAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGTGTAACGGAGGAGTTCGAAGGTACGCTTGGTACGGTCGGACATCGTACCTAAAGTGCAATGGCAAAAGCGTGCT
+ TAACTGCGAGACCGACAGTGAGCAGGTGCGAAAGGGACATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGTAGCCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGTGAGCTGGGTTTAAAACGTGTGAGACAGTTTGGTCCCTATCTGCCGTGGGCGTTGGAATTTGACGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGTACGCTGGTGTACCTGTTGTCTCGCCAGAGCACGCAGGGTAGCTATGTCGGAGAGATAACCGCTGAAACATCTAAGCGGA
+ AACTCCCTAAGAGAGGATTCCCAGGGTCGTTCGAGACCAGACGTGATGGCTGG
+
+Frankia at sp TTAGTAAGGCGCACGGTGGATGCCTTGGCACCAAGCCGATGAAGGACGTGGGAGCTGCGATATGCCTCGGGGAGCTGCAACGAGCTGGATCCGAGGATTT
+ CCGAATGCCCACATGGGGGACGCGGGGAGTGAAACATCTCATTACCCGCGGAAGAGAAAACAACGTGATTCCGCGAGTAGTGGTGAGCGAAAGCGGATGA
+ GGCTGGAGTTAGGCGAAGGTCATGCGAAGGGCGCCTAGAGGTAAAGCCCTGTACTAAACCCAAGTGCACGGAGCCCGTGAAATTCCGTGTGAATCTGGCG
+ GGACCACCCGCTAAGCCTAAATACTCCTGGTGACCGATAGCGGATAGTACCGTGAGGAAAGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAACCGTGGGAGCTGCTGGTGACCGGTGCCTTTTGAAGAATGAGCCTGCGAGTTTGGATGTGTGGCGGGTTAACTGGGTAGCCGTAGCGAGCGGTCCGA
+ AGAGGGCGGAGTCGCATGTCCAAGACCCAAGCCAGTGATCTACCCATGGCCAGTTGAAGCGCGGTAAGACCGTGTGGAGGACCGAACACCAGGGTTGAAA
+ ACCTGGGGATGAGTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCGCATTCTGCCGAGGTA
+ GAGCACTGGATGGCCTAGGGCCCGCTAAAGTCAGCCAAACTCCGAATGCCGGAATGCGGCAGTGAGACGCGGGGGATAAGCTTCGTAGTCGAGAGGGAAA
+ CAGCCCAGATCGCCAGCTAAGCCCCTAAGGGCGCTAAGTGGAAAGGATGTGAGTCGCATAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTCCCGACAATGTCGGCTAAGCGCACCGCCGAAGCTGCGGCATTTGGGTAGGGGAGCGTCGTGTGCGTGTAAGCGG
+ CGGGGTGACTGTCGTGGATGCCATACGAGTGAGAATGAGGCATGAGTAGCGATGACGGGTGAGAAACCCGTCCGCCGGATGACCAAGGTTCCTGGGGCAG
+ CTAATCCGCCCAGGGTGAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAGGGTAGTCCACCAGG
+ TGGCTGGGGATCCTGCCGAGAAAAGCCCCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCGAGGCGTCGAGTGAACTGTGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCGTTTATGCCGCAGAGACCGGGGAAGGACTGTTTACTAAAAACATAGCCCGTGCTAAGTCGTAAGAC
+ ATGTATACGGAGTGACGCCTGCCCGGTGCTGGAACGTTAAGGGGACGGGTTCGGTCAGAACTTAAGCGCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTTCCCACTGTCTCAACCACAGACTCGGCGAAATTGCATTACG
+ AGTAAAGATCTCGTTACGCGCGGCAGGACGGAAGACCCCGGGACCTTTACTATAGCTTGATATTGGTGTTCGGTTCGGCTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAGCTGGGACGCCAGTTCTGGTGGAGTCTTGTGAAATACCACTCTGGTCGTACTGATGTCTAACCTCGATTCAGGGACAGTGTCTGGTGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGCAAGTGCACAAGGGAGCT
+ TGACTGTGAGACAGACAGTGAGCAGGTGCGAAAGGGGACTAGTGATCCGGCGGTGGCTGTGGAAGCGCCGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTGCCCAAGAGTCCATATCGACGGCAAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCCGCCGCGCGCGCAGGAGATTGAGAAGGCTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTGTGCCAGTTGTTCTGCCAAGGCAGGCTGGTTGGCTACGTCGGAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTCTTGAGAGAGGTCTCCCAGGCCCCCGATAGATGATGGGTGATGGCCGG
+
+Rhodopseudomonas at pal TGCTTAAGGTGTTCGACGGATGCCTTGGCGCTGAGGCGATGAAGGACGTGCTACCTGCGATAAGCCATGGGGAGCTGCGAAAAGCTTGATCCGTGGATTT
+ CCGAATGGAGACATCAGCGACCCAGGGACTGAAACATCTAAGTACCTGGGGAAAGGACATCAACGAGACTCCGCTAGTAGTGGCGAGCGAACGCGTACCA
+ GGCCATCACAATTGGAATCTGTAGGAAACAGAGCCTAGAGGTGAAGCCCCGTAAAAATGCTGAGTAGGCGGGACACGTGAAATCCTGTCTGAACATGGGG
+ GGACCACCCTCCAAGCCTAAGTACTCTCAGCGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAATCGGACACCT
+ ACAACAGACGGAGCCCCGGGTGACGTGTACCTTTTGTATTATGGGCCAGCGACTTAATTTAACGAGCAGCTTAAGGTGGTAGGCGCAGCGAGCGGTCTGA
+ ATAGGGCGAAGTTCGTTGGATTAGACCCAAACCAGTGATCTAGCCATGAGCAGTTGAAGGTGAGTAACACTCACTGGAGGACCGAAGGTGCCTGTTGAAA
+ AAGGCCCGATGACTGTGTTAGGGGTGAAAGGCCAATCAAACTGGAAATAGCTGGTCTCCGCGAAAGATATTTAGGTATCGCCTCGGATACCTCAGGGGTA
+ GAGCACTGGATGGGCTAGGGATCTCTAAACCCAACCAAACTCCGAATACCTGTATCCGGGAGTCACACGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAA
+ CAACCCTGACCTACAGCTAAGCCCCCAATCTGGCTAAGTGGAAAGGATGTGAAATCCCAAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGGGTTTCCCGAAGATGTCGGCTAAGCCACGAGCCGAAGCTTAGGGTCAGCGGTAGCGGAGCGTTCTGTACCTGCAAGGGG
+ ACCCGTGAGGCGCCTGGAGGTATCAGAAGTGCGAATGTGGCATGAGTAACGAAACACTGTGAAAGACAGTGTCGCCGAAAGTCCAAGGTTCCTGCGTAAG
+ TTAATCTTCGCAGGGTTAGCCGGTCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAATCACGGAATATTGTGAGCGTGACGAATCCCTTAGTTGTCGACA
+ CTGGTCGCCTCGGTTCCAGGAAATACACCGTACCAAACCGACACAGGTGGACGGTAGAGTATACCAAGGCGTTGAGAGAACTATGTTGAAGGAACTCGGC
+ AATTTACCTCCGTAACTTCGGGATAAGGAGGCCTTCCAAGGGGGCACAGACCGGGGGGGAACTGTTTAACAAAAACACAGGCTCTGCGAAATCGCAAGAT
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGAGGAGTCAAGTCTGAATTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGACTTCCCCGCTGTCTCCAACATAGACTCAGTGAAATTGAATTCCC
+ CGTGAAGATCGGGGTTCCTGCGGTCAGACGGAAGACCCCGGCACCTTTACTGTAGCTTTGCGCTGGTATTCGTGACTGTTTGTGTAGAATAGGTGGTAGG
+ CTTTGAAGCTCGGGCGCCAGCTCGGGTGGAGCCCAATGAAATACCACCCTAATGGTTATGATATCTAACCGCGATTCCGGGACAGCGCATGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGTGCGACGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTACAATGGCATAAGCCTGCC
+ TGACTGCGAGACCAACAGTGAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTCCCGGTGGATGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATGACGCCCAAGAGTCCATATCGACGGCGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGAAGGTCCAAGGGTTCGCTG
+ TTCGCCGATAAAGTGGTACGTGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTTGGAATTTGAGAGGATTGCCCCTAGTA
+ CGAGAGGACCGGGGTGAACGTACTCTGGTGGAGCTGTTGTCGCGCCAGCGCATGCAGCATAGCTATGTCGGCGGGATAACCGCTGAAACATCTAAGCGGA
+ AACCCCCTAAAAGAGCATTCCCAGAACCGTGGAAGACCACACGTGATGGCCGG
+
+Chlamydia at muridarum TTGATAAGGCTATTGGTGGATGCCTTGGCATTGAGGCGATGAAGGACGCGAATACTGCGAAAAGCTCCGGCGAGCTGGTAAAAGCAAGACCCGGAGGTGT
+ CCGAATGTTGACATAAGCAACCTGCTGACTGAAACATCTTAGTAAGCAGGGAAAAGAAATCGAAGAGATTCCCTGTGTAGCGGCGAGCGAAAGGGGAAGA
+ GCCTGGACCTAGTTGAACCATCTGGAAAGTGGATGAACAGGTGAAGTCCCGTAACAAGCCTGAGTGGGCTAGACACGTGAAACCTAGTCTGAATCTGGGG
+ AGACCACTCTCCAAGGCTAAATACTATCAATGACCGATAGTGAACAGTACTGTGAAGAAAGGCGAAAAGACTTGAGTGAAAAGACTGAAACCAGTAGCTT
+ ACAACGGTCGAAGACCAGGTTGACGGGTGCCTTTTGCATGATGAGCCAGGGAGTTAAGCTAAACGGCGGGTTAAGTACGGAGCCGAAGCGAGCGGTTTTA
+ AAAGAGCGTAGTCGTTTGGTTTAGACACAAACCAGTGAGCTATTTATGACCAGTTGAAGCATGGTAAAACTATGTGGAGGACCGAAAGTACCTGTTGAAA
+ AAGGTTGGATGAGTGTAATAGGGGTGAAAGGCCAATCAAACTTGAGATATCTTGTCTCTCCGAAATAACTATAGGGTTAGCCTCGGAAATTTTTGGGGTA
+ GAGCACTGAATTCTAGCGGGCTCGCTAACGGAAATCAAACTCCGAATACCAAGATCCGGGAGATAGACGCGGGGGCTAAGCTTCGTTGTCGAGAGGGGAA
+ CAGCCCAGACCGCCGATTAAGTCCCTAATTATGCTAAGTGATAAGGAAGTATGATTCTAAGACAGTTGGAATGTTGCTTAGAGGCAGCATTTAAAGAGTG
+ CGTAACAGCTCACCAATCGAGAATCATCCGATAATAACGGCTAAGCATAAAACCGACATCGCGGGTTTGCGGTAGGAGAGCGTAGTATTGCAGTAAGGTG
+ TACCGGAAGAGCGCTGGAGCGGATACTAGTGAAGATCTGGCATAAGTAACGAAAGGGAGTGAAAATCTCCCTCGCCGTAAGCCCAAGGTTCCAGGGTCAG
+ CTCGTCTTCCCTGGGTTAGTCGGCCCCTAAGTCGAGGCGTACCGTAGACGATGGACAGCAGGTAATATTCTGCACATGACGGAGAAGTTAAGCACCGGAT
+ TGGTCCGGTGTCCTTTCAAGAAATATACCGTACCAAACCGACACAGGTGGGCAGATGAGTATTCTAAGGCGGCGAGATAACTTTCGTTAAGGAACTCGGC
+ AAATTATCCCCGTAACTTCGGAATAAGGGGAGCCTTGAGGGCCGCAGAGAAAGGCCCGGGACTGTTTAGCAAAAACACAGCCTATGCAAACCTCTAAGGG
+ AAGTATATGGTGTGACGCCTGCCCAATGCCAAAAGGTTAAAGGGATATGTCAAGATTGAACCTAAGCCCTGGTGAATGGCCGCCGTAACTATAACGGTGC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGTGTAACGATCTGGGCACTGTCTCAACGAAAGACTCGGTGAAATTGTAGTAGC
+ AGTGAAGATCTGTTTACCCGCGAAAGGACGAAAGACCCCGGAACCTTTACTGTACTTTGGTATTGATTTTTGGTTTGTTATGTGTAGGATAGCCAGGAGA
+ CTAAGAACACCCTTCGTCAGGAGGGTGGGAGTCACGTGAAATACTGGTCTTAACAAGCTGGAATCTAACATTAATAGATGGACATTGCCAGACGGGCAGT
+ TTTACTGGGGCGGTATCCTCCTAAAAAGTAACGGAGGAGCCCAAAGCTTATTTCATCGTGGTTGGCAATCACGAGTAGAGCGTAAAGGTATAAGATAGGT
+ TGACTGCAAGACCAACAGTGAGCAGAGACGAAAGGGGCTTAGTGATCCGGCGGTGGAAGTGGAATCGCCGTCGCTTAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATCGCCACCAAGAGTTCATATCGACGTGGCGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGAAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGCGAGCTGGGTTCAAAACGTGTGAGACAGTTTGGTCTCTATCCTTCGTGGGCGCAGGATATTGAGAGGACTGTTCCTAGTA
+ CGAGAGGACCGGAATGGACGAACAATGGTGTGTCGGTTGTTTTGCCAAGACAAGCCGAGTAGCTAAGTCGGAAGGATAAGCATTGAAACATCTAAATGCA
+ AGCCTCCTAAGAAAGGTATCCCAGACTCCATGTAGACTACTGGTGATGGTTGG
+
+Leuconostoc at lactis TTAATAAGGCGCGTGGTGGATGCCTTGGCACTAAGCCGATGAAGGACGTGACTAACACGATAAGCTTTGGTGAGCGGTAAGACGCTAGACCCAGAGATTT
+ CCGAATGTCAACATGAGAAACGCTGTGACTGAAACATCTCATTAGCAGCGGAGAAGAAAGAAAATCGATTCCCTAAGTAGCGGCGAGCGAACGGGGAAGA
+ GCCCGGATATAGCAGAACAAGTTGGGAACTTGGCTTAGAGGTGAAGCCCCGTAGCAATCCTGAGTCGGCCGGACACGTGAAATCCGGTCGGAATCTGCGG
+ GGACCATCCCGTAAGGCTAAATACTCCTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAACCAGACGCCT
+ ACAAAAGTCAGAGCCCAGGGTGATGGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGGTATCGTGCGGGTTAAGAACGGAGCCGCAGCGAGCGGTGTGA
+ ATAGCGCGTAGTACGATGCTGTAGACCCAAACCAGTGACCTACCCATGGTCAGATGAAGGTGAGTAAAACTTACTGGAGGTCCGAAGGTGCATGTTAAAA
+ AATGCCGGATGAATGTGGTAGCGGTGAAATTCCAAACGAACTTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCCTCGTAAGGTACTGAGGTA
+ GAGCTCTGTTTGGACTAGGCCTAGGTAAATTCAGATAAACTCCGAATTCCAGCACACGGGAGTCAGACGCGAGTGATAAGATCCGCAGTCGAAAGGGAAA
+ CAGCCCAGATCACCAGTTAAGTCCCAAAAAATGCTAAGTGGAAAGGATGTGAGTTGCGCAGACAACTAGGATGTTGCTTAGAAGCAGCCTTCAAAGAGTG
+ CGTAATAGCTCACTAGTCGAGTGACGCCCGAAAATTTCGGCTAAGCATATTACCGAAACTGTGGGTTAGCGATAGGAGAGCGTTGTAAGGCGATAAGGGA
+ GATCGTAAGACTGCTGGAGCGCTTACAAGTGAGAATGCGGTATGAGTAGCGAAGACAGGTGAGAATCCTGTCCACCGAATGACTAAGGTTCCTGGGGAAG
+ CTCGTCCACCCAGGGTTAGTCGGGACCTAAGGCGAGGCTGAACGTAGTCGACGGATAACAGGTGAGATTCTGTACGGGACGCAGAGGCTACCAGACGCAA
+ TGGTGCGCTGCCCTGCCGAGAAAAGCCCCGTACCAAACCGACACAGGTAGTCAGTGGAGAACACTAAGGTGGCGAGAGAACCCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCACATAGCCGCAGTGAATGGCCCAGGACTGTTTATCAAAAACACAGGTTCTGCAAAATCGTAAGAT
+ AAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAAAGGAGTGCTTCGGTACGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCAACGAGGGACTCGGTGAAATTTAAATACC
+ CGTGAAGATCGGGTTACCCGCGACAGGACGGAAGACCCCAGGAGCTTTACTGTAGCTTGATATTGAATGTTTGTGCTGCTTGTACAGAATAGGTAGGAGA
+ CGAAGAAATTTGGACGCCAGTCTAGACGGAGTCAATTGGGATACTACCCTCGTTGTATGACATTCTAACACTGATTCGTGGACAGTGTCTGGCGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCTCAAAGGTTTGCTCAGAATGGTTGGAAATCATTCGTAGCGTGTAAAGGCATAAGCAAGCT
+ TGACTGCGAGAGTTACACTGAGCAGGTACGAAAGGGACTTAGTGATCCGGTGGTTCCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCTGGGATA
+ ACAGGCACATCTCCCCCAAGAGTCCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACCCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACATACGCTGGTGTACCAGTTGTTCCGCCAGGACATGCTGGGTAGCTATGTTGGTGAGATAAACGCTGAAACATCTAAGTGTA
+ AACTCCCTGAGAGAGATTTCCCAGACCCCTTAGAGATGATAGGTGATGGCTAG
+
+Micrococcus TTTCCAAGGCGCATGGTGGATGCCTTGGCAACAAGCCGAAGAAGGACGTGGGAACTGCGATAAGCCTGGTGGAGTCGTAACGGACGTGAGACCAGGATTT
+ CCGAATGCCCACATGGGGGACGTGGGGACTGAAACATCTCAGTACCCACGGAAGAGAAAACAAAGTGATTCCGTTAGTAGTGGCGAGCGAACGCGGATGG
+ GGCTGGCTATAGACGAACCAGTGTGGATCTGGACCTAGAGGTGAAGTCCCGTATCAATCCCGAGTGCACGGGGCCCGAGGAATCCCGTGTGAATCTGCCA
+ GGACCACCTGGTAAGCCTGAATACTACTGTTGACCGATAGCGGACAGTACCGTGAGGAATGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCATGTGCCT
+ ACAACCGTTGGAGCCTTGGGTGACAGGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGGATACGTGGCGGGTTAACTGGGAAGCCGTAGCGAGCGGTCTGA
+ ATAGGGCGGAGTCGCGTGTCCTAGACCCAAGCGAGTGATCTACCCATGGCCAGTTGAAGCGCGTTAAGAACGCGTGGAGGACCGAACACTTCAGTTGAAA
+ ATGGAGGGATGAGTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCACGTTCTCCCGAGGTA
+ GAGCACTGGATGGACGAGGCCTCGGCAACTTCAGCCAAACTCCGAATGCCGGAGCGTGGCAGTGAGACGTGGGGGATAAGCTTCATAGTCGAGAGGGAAA
+ CAGCCCAGACCACCGGTTAAGCCCCTAAGGGTGCTAAGTGGAAAGGATGTGAGTTGCTGAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTCCCGACAATGTCGGCTAAGTACACCGCCGAAACCGTGGCATTTGGGTAGGGGAGCGTCGTTCAGAGGTAAGCCA
+ GCGGGTAATTCTGGTGGATTGTGGACGAGTGAGAATGAGGCATGAGTAGCGAAGACGGGTGAGAAACCCGTCCGCCGGATGACTAAGGTTCCAGGGTCAG
+ CTAATCTGCCCTGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAAGGTAGCCGGCCGGA
+ TGGCTGGCGGTTCTGCCTAGAAAAGCCCCGTACCAAACCGACACAGGTGGTCGGTCGAGAATACTAAGGCGTCGAGAGAATCATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCCCGTCGGCCGCAGAGACCGGGGGAGGACTGTTTATCAAAAACACAGGCCATGCGAAGTCGTAAGAC
+ ATGTATATGGACTGACTCCTGCCCGGTGCTGGAAGGTTAAGGGGACCCGTTCGGGGAGAACTTAAGCCCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGAGTAACGACTTCCCCGCTGTCTCAACCATGAACTCGGCGAAATTGCATTACG
+ AGTAAAGATCTCGTTACGCGCAGAAGGACGGAAGACCCCGTGACCTTTACTATAGTTTGGTATTGGTGTTCGGTGTGGCTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAGCGGGCACGCCAGTGTTCGTGGAGTCTCGTGAAATACCACTCTGGTCACTCTGATATCTAACTTCGATTCAGGGACAGTGCCTGATGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAATGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGTAATCAGGTGTCGAGTGCAAGTGCACAAGGGAGCT
+ TGACTGTGAGAGTGGCACTGAGCAGGGACGAAAGGGGACTAGTGATCCGGCGGCTCGTGTGGAACGGCCGTCGCTCAACGGATAAAGGTACCTCGGGATA
+ ACAGGCTGATCTTGCCCAAGAGTCCATATCGACGGCATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCTCTGCGCGCGTTGGAAATTGAGAAGGCTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTATGTCAGTTGTACCGCCAGGTCAGGCTGATTAGCTACGTCGGATGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCGCTTGAGAGAGATTTCCTAGGCCCCCAGTAGAACACGGGTGATGGCTGG
+
+Treponema CGAATAGTGTTTACGGTGGATGTCTTGGAGTTGAGGCGATGAAGGTCGTGATAACTGCGAAAAGCCTCGGGGAGGAGCACAGTCCTGGATCCGGGGATGA
+ CCGAATGTTGGAATAACGAACTGGGTGACTGAACCATCTAAGTAACTTGGGAAAAGAAATCAAGGAGATTCCGAAAGTAGTGGCGAGCGAAATTGGAGGA
+ GCCTGGGTATAGCAGAAAGGTTTGGGAAGCCTGACGAGAGGTGAATCCCCGTAGCAATCCTGAGTCGGCGGGACACGAGGAATCCTGTCGGAATCTGGGT
+ CGACCACGATCTAAGGCTAAATACTCACAACTACCGATAGTGGAAAGTACCGTGAGGAAAGATGAAAAGACCGGAGTGAAAAGACTGAAACCGTAAACCA
+ ACAAATGTTACAGCCTGGGGTGGTAGGTGCCTTTTGTAGAATGAGCCTGCGAGTTACGGTGTGCAGCAGGTTAAGGGCGGAGCCGGAGGGACCGGTCTTA
+ AAAGGGCGGAGTTGTACGTCGTAGACCCAAGCCGGTGATCTAGTTATGAGCAGTTGAAACAGGGTGAAGCCTTGTGGAGGACCGAAATAATCTGTTAAAA
+ AAGGTTGGATGACTGTACTAGGAGTGAAAGGCTAAACAAACCTGAGATAGCTGGTCTCCCCGAAATGCCTTTAGGGACAGCCTTATAAACTGTCGAGGTA
+ AAGCACTGGATGGGCTAGGGTTAGCCAAACCCAATCAAACTCTGAATGCCGGTCTGTGGGAGTGAGACGCGTGCGACAAGGTTCGTAGTCGAGAGGGAAA
+ CAGCCCAGACCGTCAGCTAAGTCCCGAAAACGCTTGAGTGTAAATGAAGTTGGGTACCTGGACAGCCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTACGCACAGATAATGTCGGCTAAGCGGTATACCGAAGCTACGGGTTTGCGGTAGGGGAGCATTCCATGCTGATAAGGAT
+ ATCCGGGAGAGTTCTGGAGGGGATGGAAGAGAGAATGAGGTATAAGTAACGAAGGAGGGTGAGATTCCTTCCCGCCGAAAACCTAAGGTTCCTGGGTGAG
+ GTCATCTGCTCAGGGTAAGTCGGCCCCTAAGGCGAGGACGAGCGTAGTCGATGGGAATCCGGTTATATTCGGAACAGGACGCGTAGGTGAAGCCCGCCAT
+ TGGTTGGAGGTCGCGACGGGAAATATACCGTACCAAACCGACACAGGTAGGTGGATGAGTAATCTAAGGCGTCGAGAGAACTCGCGTCAAGGAACTCGGC
+ AAAATACACACGTAACCTCGGGAGAAGTGTGACCCTTTGGGTGGCAGAAAGCGGTCCGGGACTGTTTATCAAAAACATAGCATCTGCAAATCAGTAATGA
+ ACGTATAGGTGGTGACACCTGCCCGGTGCTGGAAGGTTAAGAGGAGAGGTTAAGTTTGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAATGGTGTAACGACTCTGGAACTGTCTCGACGCGAGACTCGGTGAAATTTATGTACC
+ GGTAAAGAACCGGTTACCCATAGTTAGACGGAAGACCCCGGAACCTTCACCGTAGCTTACTATTGGAACTTGGTTTACCATGTGTAGTATAGGTGGGAGA
+ CAGAGAAGCTTGGCCGTCAGGTTAGGCGGAGTCACATGAAATACCACCCTTGGTACGTCAGTTTCTAACCTTTGAAAAGGGACCGTGGTAGGTGGGCGGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGTGCGCGAAGGTCTCCTCACACCGGTTGGAAATCGGTGCGCGAGTGTAAAGGCACAAGGAGGCT
+ TAACTGCGAGACCGACAGTGAGCAGATACGAAAGGGTCTTAGTGATCTGGCGGTAGCGGTGGAAGCGCCGTCACTTAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATTTTCCCCAAGAGTTCACATCGACGGGAAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGAAGCAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGTGAGCTGGGTTCAGAACGTGCGAGACAGTTCGGTCCCTATCTGCTATGGGCGTTGGATAGTGAGAGGACTGCTTTTAGTA
+ CGAGAGGACCGAAGTGGACGAACTCTGGTGTACCAGTTATCCTGCCAAGGTATGCTGGGTAGCTATGTCGGAGGGATAACCGCTGAAGCATCTAAGTGGA
+ AGCCCCCTAAGATACATATCCCAGACTCCTTGCACACTACAGGTGATGGCTGG
+
+Zoogloea TGCGTAAGGCAATTGGTGGATGCCTTGGCATGCAGGCGATGAAGGACGTGATACCTGCGATAAGCCGTGGGGAGCTGCGAAGAGCTTGATCCATGGATTT
+ CCGAATGTCTACATGAGCGACGCAGGGACTGAAACATCTAAGTACCTGCGGAAAGGACATCAACGAGACTCCGCAAGTAGTGGCGAGCGAACGCGGACCA
+ GGCCGCATAAAGTGGAACGGAATGGAAATCCGGCCTAGCGGTGAAGCCCCGTAACAGACCTGAGTGGGCGGGACACGTGAAATCCTGTCTGAACATGGGG
+ AGACCACTCTCCAAGCCTAAGTACTCTGCATGACCGATAGCGAAAAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGGTTGCCT
+ ACAACAGTCGGAGGCCAGGCTGACGGGTACCTTTTGTATAATGGGTCAACGACTTAGTGTAACTAGCAGCTTAAGGTGGTAGGCGCAGCGAGCGGTCTGA
+ ACAGGGCGCAGTTAGTTGCATTAGACCCAAACCAGTGATCTAGCCATGAGCAGTTGAAGGTTGGTAACACCAACTGGAGGACCGAACGCATCTGTTGCAA
+ TAGATGGGATGACTGTGCTAGGGGTGAAAGGCCAATCAAACTCGAGATAGCTGGTCTCCGCGAAATCTATTTAGGTAGAGCGTCGACTACCCTCGGGGTA
+ GAGCACTGGATGGGCTAGGGACCTCTAATCCTAACCAAACTCCGAATACCGATAGTCGGCAGACACACGCGGGTGCTAACGTCCGTCGTGAAAAGGGCAA
+ CAACCCTGACCTCCAGCTAAGTCCCCAAGCTGGCTAAGTGGAAAGGATGTAGACTCCCAAAACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGGGGTTTCCGAAAATGTCGGCTAAGCCATGCACCGAAGCTGAGGATCAGTGGTAGCGGAGCGTTCCGTACCTGCAAGGAG
+ GACCCGTGGGCCTCTGGAGGTATCGGAAGTGCGAATGTGACATGAGTAACGAAAGGGAGTGAGAGACTCCCTCGCCGAAAGACCAAGGTTCCTGCTTAAG
+ TTAATCTGAGCAGGGTTAGCCGGCCCCTAAGACGAGGCGGAACGTAGTCGATGGGAACCACGTAATATTGTGGGCGTGACGGATTGCGTACTTGTCATCA
+ TTGGGTGCAGGGGTTCCAGGAAATACACCGTACCAAACCGACACAGGTGGTCGGTAGAGCATACCAAGGCGTTGAGAGAACTGCGTTGAAGGAACTCGGC
+ AAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCCCATGGTGGCACAGACCGGGGGAGGACTGTTTATCAAAAACACAGGCTCTGCGAAGTCGCAAGAC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGAGGTCAAGTTTGAATCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCGCTGTCTCCAACGCAGACTCAGTGAAATTGAATTCCC
+ CGTGAAGATCGGGGTTCCTGCGGTTAGACGGAAGACCCCGGCACCTTTACTATAGCTTTACACTGGCATTCGTGTCGGCATGTGTAGGATAGGTGGTAGG
+ CTTTGAAGCAGGGACGCCAGTTTCTGTGGAGCCTCCTGAAATACCACCCTTATCGTCATGATGTCTAACCGCGATTCCGGGACCGTGTATGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCGAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCATAAGCCCGCC
+ TGACTGCGAGACTGACAGTGAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATGACCCCCAAGAGTCCATATCGACGGGGTGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGTGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGAATTTGACAGGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACATATTCTGGTGGACCTGTTGTCCTGCCAAGGCAAGCAGGGTAGCTATATTGGATGGATAACCGCTGAAGCATCTAAGCGGA
+ AACCACCTAAAACGAGTATTCCAGAGCCGTGGAAGACGACACGTGATGGCCGG
+
+Renibacterium TTTTTAAGGCACACGGTGAATGCCTTGGCATTAAGCCGAAGAAGGACGTAGGAACTGCGATAAGCCTCGGGGAGTTGTAACGAACACGATCCGAGGATGT
+ CCGAATGCCCACATGGGGGACGTGGGGACTGAAACATCTCAGTACCCACGGAAGAGAAAACAATGTGATTCCGTAAGTAGTGGCGAGCGAACGCGGAACA
+ GGCTGGACATAGGTGAACGGTCTTGAAAGCCGGCCGAGAGGTGTAGCCCCGTACTAATCCCAAGTGCACGGGGCCCGAGAAATCCCGTGCGAATCTGTCA
+ GGACCACCTGATAAGCCTAAATACTCCTAATGACCGATAGCGGAAAGTACCGTGAGGAAAGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCGTGTGCTT
+ ACAACCGTCGGAGCAGTCTGTGACGGGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGGCTCAGTGGCGGGTTAACTGGGCAGCCGTAGCGAGCGGTCTGA
+ ATAGGGCGGAGTCGCTGGGTCTAGACCCAAGCGAGTGATCTACCCATGGCCAGTTGAAGCGACGTAAGACGTCGTGGAGGACCGAACACTTCAGTTGAAA
+ ATGGAGGGATGAGTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTTGCGTTCTACTGAGGTA
+ GAGCACTGGATGGCCGAGGCCTCGGTAACGTCAGCCAAACTCCGAATGCCGGAGCGCAGCAGTGAGACGTGGGGGATAAGCTTCATAGTCGAGAGGGAAA
+ CAGCCCAGACCACCAACTAAGTCCCTAAGGGTGCTAAGTGGAAAGGATGTGGATTGCTTAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTCCCGACAATGTCGGCTAAGTACACCGCCGAAGTTGTGGATTCGTGGTAGGGGAGCGTCGTGTGGCAGTAAGTCG
+ CGGTGTAACCGCGGTGGAGCCTACACGAGTGAGAATGAGGCATGAGTAGCGAAGACGGGTGAGAAACCCGTCCGCCGAATGATCAAGGTTCCAGGGTCAG
+ CTAATCTGCCCTGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAAGGTAGCTGACCGGA
+ TGGCCGGCAGTTCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTGATCGGTAGAGAATACTAAGGCGTCGAGAGAATTATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCCCTTAGGCCGCAGAGACCGGGGGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGTCGCAAGAC
+ ATGTATACGGACTGACTCCTGCCCGGTGCTGGAAGGTTAAGAGGACCGGTTCGGTGAGAATTTAAGCCCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGAGTAACGACTTCCCCGCTGTCTCAACCATAAACTCGGCGAAATTGCACTACG
+ AGTAAAGATCTCGTTACGCGCAGCAGGACGGAAGACCCCGAGACCTTTACTATAGTTTGGTATTGGTGTTCTAAGTGGTTTGTGTAGGATAGGTGGGAGA
+ CTTTGAAGCCCGGACGCCAGTTCGGGTGGAGTCTCGTGAAATACCACTCTGGCCACTTGGACTCCTAACTTCGATTCAGGGACAGTGCCTGATGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTCGAGTGTAAGTGCACAAGGGAGCT
+ TGACTGTGAGAGCGACACTGAGCAGGGACGAAAGGGGACTAGTGATCCGGCGGTACATGTGGAATGGCCGTCGCTCAACGGATAAAGGTACCTCGGGATA
+ ACAGGCTGATCTTGCCCAAGAGTCCATATCGACGGCATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCCGCTGCGCGCGCAGGAAATTGAGAAGACTGTCCTTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTGTGTCAGTTGTACTGCCAAGTCACGCTGATTAGCTACGTCGGAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCCCTTAAGAGAGATTTCCAAGGCCCCCAGCAGACCACGGGTGATGGCCGG
+
+Ruminobacter TGAATAAGGTACATGGTGGATGCCTAGGCAATAAGGCGAAGAAGGACGTGCTAACTGCGAAAAGTCATGATGAGCTGGTAAAAGCCAAAGTCATGGATGT
+ CCGAATGTCAGCAAGAGCGACCGGGAGAGTGAAACATCTCAGTACCCCGGGAAAAGAAATCAACGAGATTTCCTAAGTAGTGGCGAACGAACGGGAAGCA
+ GCCCAAACATAGTTGAATTATCTGGAAAGTAAACGAAGAAGTGAAGTCTCGTAACAGTAAAGAGTGGACGGAACACGTGGAATTCTGTCTGAAGATAGGG
+ GGACCATCCTCTAAGGCTAAATACTATTATTGACCGATAGTGAAAAGTACCGTGAGGAAAGGCGAAAAGACCTGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTGGGAGCACCGTGTGACTGGTACCTTTTGTATAATCGGTCAGCGAGTTACTTTCAGTGGCGGGTTAACCAGGGAGCCGAAGGGACCGGTTTTA
+ ACTGAGCGGAGTCGCTGGGAGTAGACCCAAACCGATGATCTAGTCATGGGCAGATGAAGGCAAGTAACACTTGCTGGAGGGCCGAACACTAACGTTGCAA
+ AGTTAGGGATGACTGTACTAGGGGTGAAAGGCCAATCAAATCAGTGATATCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCAAAAGTTATGGAGGTA
+ GAGCACTGTTTCGATAAGGTCTCGATGAGTCGATGCAAACTCCGAATACTCAGATTTGGGAGACAGACGCGGGTGCTAAGGTCCGTTGTCGAGAGGGAAA
+ GAGCCCAGACCGCCAGCTAAGTCCCGAAGTAGGTTAAGTGGAAACGATGTGGAAGGCATAGACAGCTAGGATGTTGCTTAGAAGCAGCCTTAAAAGAAAG
+ CGTAATAGCTCACTAGTCGAGTCGGCCCGGAAGATGTCGGCTAAACCTTACACCGAAGCTGCGGAAAATTGGTAGGGGAGCGTTCTGTAGCTGTAAGGGC
+ AACTGGAAGTTGACTGGAGCTATCAGAAGTGCGAATGTGACGTGAGTAACGAATATATGTGAAAAACATATACGCCGAAAGACCAAGGTTTCTGTCCAAG
+ TTAATCGGGGCAGAGTGAGTCGGTACCTAATGTAAGGCTGAACGTAGACGATGGATATTCGGTAATATTCGAAACAGGACGGAGAGGCTAGTGCTCTTAT
+ TGGTAAGGCATCCTTCCAGGAAAAGTGCCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATAGTACCGTAACTTAGGGAGAAGGTATGCTGAGCACGTGACAGCAAAGGGTGGTGGACTGTTTAACAAAAACACAGCCACTGCGAACACGGAAGTG
+ AAGTATAGTGTGTGACACCTGCCCGGTGCCGGAAGGTTAAATGATGAAGTCAAGTTCTGATTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGCAAGTTCCGACCTGCACGAATGGTGTAACCATGGCCACGCTGTCTCCACCCGAGACTCAGTGAAATCGAAATCGC
+ TGTGAAGATCAGTGTACCCGCGGCTAGACGGAAGACCCCGGAACCTTTACTATAGCTTGACACTGAACATTGAGTCTGTCTGTGTAGGATAGATGGGAGA
+ CAGAGAAGCGAGTACGCCAGTATTCGTGGAGTCGCCTGAAATACCATTCTGGGAGACTTGTGTTCTAACCAAAAAAATGGGACAGTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCTAAAGGGTAACGGAGGAGCACGAAGGTTGGCTAATCACGGTCGGACATCGTGAGGTTAGTGTAATGGTAGAAGCCAGCT
+ TAACTGCGAGACAGACGGTGAGCAGGTGCGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTTGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTCAAAACGTGTGAGACAGTTTGGTCCCTATCTGCCGTGGGCGCTGGATGTTGAAGGGATTGCTCCTAGTA
+ CGAGAGGACCGGAGTGAACGAACGCTGGTGTATGGGTTGTCATGCCAATGCATGCCCGGTAGCTACGTCGGATCGATAACCGCTGAAACATCTAAGCGGA
+ AGCGACCTAAGAAAGTCATCCCAGGGACGTTGGAGACTACACGTGATGGCTGG
+
+Stigmatella CTACTAAGGCGTGTGGTGGATGCCTAGGTGCCAAGGCGATGAAGGACGTGGGTGCTGCGAAAAGCTCCGGGGAGTTGCAACGAACGTGAACCGGAGATGT
+ CCGAATGCCCACATGGGCGACCAGGGGAGTGAAACATCTCAGTACCCTGGGAAAAGAAAACAATGTGATTCCCGTAGTAGCGGCGAGCGAACCGGGAACA
+ GCCTGGTGCTAGCGGAAGCACTTGGAAAGTGCACCAAGACGTGAAGTCGCGTAGCAAGCCCAAGTCGGCGGGACACGTGCAATCCTGCCCGAATCTGCCG
+ GGACCATCCGGTAAGGCTAAATACTATTGGCGACCGATAGTGAAAAGTACCGCGAGGAAAGGTGAAAAGACCGGAGTCCAAAGACTGAAACCACATGTCT
+ ACAACAGTTCGAGCGCAGCGCGAGAGGTACCTTTTGCATCATGATTCGGCGACTTAATGTACGTAGCGGGCTAAGATGGGAGCCGGAGCGAGCGGTCCGA
+ AATGGGCGGAGTTGCGTGTATTAAACCCAAGCGGGTGATCTACACATGGCCAGATGAAGTGCGGTAACACCGCATGGAGGTCCGAACATGAAAGTTGAAA
+ ATTTCGGGATGAGTGTTGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAAGATATTTAGGTATCGTCTCAGGCAGTACCGAGGTA
+ GAGCACTGGAACGGCTAGGTCCCGATAAACCGTACCAAACTCCGAATGCCGGTGCCTGGGAAGCAGTCGTGGGTGATAACGTCCATTGGCAAGAGGGGAA
+ TAACCCAGACCGACAGCTAAGCCCCCAAACAGTCTAAGTGACAAGGATGTGCAGGTCATTGACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCAAGACAGGCCCGAAAATGTCGGCTAAGACTAGTGCCGAAGCTTCGGGTCAGCGGTAGGGGAGCGTCCCAGTGCGGCAAGGTA
+ GACCGAAAGGCTGCTGGAGCGACTGGGAGTGCTGATGCGAAATGAGTAGCGAAAGGGGGTGAGAAACCCCCTCGCCGTAAACCCAAGGTTCCTGGGTCAG
+ TTAATCTTCCCAGGGTTAGCCGGAACCTAAGCTGAGGCCGAACGTAGGTGATGGAAAGCAGGTAATATTCTGCGCAGGACGGAGAGGCTAGACGACCGGG
+ TGGCCGGCGTTCCTTCCAAGAAAAGTTCCGTACCAAACCGACACAGGTGGGTAGGAGAAAATCCTAAGGCGTTGAGAGAACTCTCCTCAAGGAACTAGGC
+ AAATTTCCACCGTAACTTCGGAAGAAGGTGGGCCTCTAAAGTTGCAGAGAAAGGCGGAGGACTGTTTACCAAAAACACAGGCTCTGCGAAGGCGCAAGCC
+ ACGTATAGGGTCTGACTCCTGCCCGGTGCTGGAAGGTTAAGGGGATTCGTCAAGGATGATCCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGAGTAACGACTTCCGCGCTGTCTCGGAGAGGGACTCAGCGAAATTGAAATAGC
+ TGTGCCGATCAGTTTACCCGCAGCAAGACGGAAGACCCCGGAACCTTTACTACAACTTGACAGTGACACTAGGGATTGACTGTGTAGGATAGGTGGGAGC
+ CTTTGAAGCCGGGCCGCTAGGTTCGGTGGAGGCACGTGAAATACCACCCTGTTGATTTCTGTGTCTAACCATGATATTGGGACACTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGATGGTTCCCTCAGCCCGATTGGAAACCGGGCGTCGAGTGCAATGGCATAAGGGAGCT
+ TGACTGCGAGACAGACAGTGAGCAGGTGCGAAAGGGTCATAGTGATCCGGTGGTCCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGCGAGCTGGGTTCAAAACGTGTGAGACAGTTTGGTCCCTATCTGCTGTGGGCGTAGGATATTGAGAGGCCTGACCTTAGTA
+ CGAGAGGACCGGGTTGGAGACACTCTGGTGTACCAGTTATCACGCCAGTGTACGCTGGGTAGCCAAGTTCGTTGGATAACCGCTGAAACATCTAAGCGGA
+ AACCGCCTAAGACAGGTATCCCAGAGCCGTCGAAGACTACACGTGATGGCCGG
+
+Paracoccus CGGATAAGGCGTTTGGTGGATGCCTTGGCAGCAAGGCGATGAAGGACGTGATACCTGCGATAAGCCATGGGGAGCTGAGAAAAGCTTGATCCATGGATCT
+ CCGAATGTTAACATAAGCGACCCGGGGACTGAAACATCTAAGTACCCGGGGAAAGGAAATCAACGATACTCCCCCAGTAGTGGCGAGCGAACGGGGACCA
+ GCCGCCGATGACCAGAATGGCCTGGAAAGCCAGCCTAGCGGTGAAGCCCCGTAGGAGTATTAAGTGGGCGGGACACGTGAAATCCTGTCTGAAGATCGGG
+ GGACCACCCTCGAAGGCTAAGTACTCTTGCTGACCGATAGCGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAACCGGACGCCT
+ ACAACAGTCGGAGGGGTCCCTGACGGGTACCTTTTGTATAATGGGTCAACGACTTGGTCTATCTAGCAGCTTAAGTTGGTAGGCGCAGCGAGCGGTCTTA
+ AAAGGGCGGAGTTAGATGGATCAGACCCAAACCGATGATCTAGGCATGAGCAGCTGAAGGTTGGTAACACCAACTGGAGGGCCGAACACACCTGTTGAAA
+ AAGGTGGGATGACTGTCCTAGGGGTGAAAGGCCAATCAAATCTGAGATAGCTGGTCTCCGCGAAAGCTATTTAGGTAGCGCGTCAGATTCTCCCGGGGTA
+ GAGCACTGCATGGATGAGGGGCCCCTAAGTCTAAGCAAACTCCGAATACCGGAATCTGGCAGACACACGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAA
+ CAACCCTGACCAACAGCTAAGCCCCCAATCTGGCTAAGTGGAAAGCATGTGGACTTCCAAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGATAG
+ CGTAACAGCTCACTGGTCAAGAGGTCTGCGAAGATGTCGGCTAAGCCACGAGCCGAAGCTTTGGGTTTGCGGTAGCGGAGCGTTCCGTGACTGTAAGCCG
+ GGCCGTAAGCCCGGTGGAGTGATCGGAAGCGAGAATGTGACATGAGTAGCGAAACAGGGTGAGAGACCCTGTCGCCGAAAGTCCAAGGTTCCTGCTTAAG
+ CTAATCTGAGCAGGGTAAGCCGGCCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAACCAGGTAATATTCTGGGCGACGGATCGAGGTGTAGTTCCTCCA
+ TCGGGAGGGCTGTTCCTGGAAATAGCACCGTACCAAACCGACACAGGTGGACGGTAGAGAATACCAAGGCGTTGAGAGAACCACATTTAAGGAACTCGGC
+ AAAATACCTCCGTAAGTTCGCGAGAAGGAGGCCCCGCAGGGGGGCACAAACCGGGGGGGGACTGTTTACTAAAAACACAGGCTCTGCGAAGCCGTAAGGC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAAAGGAGAGGTCAAGCTTGAATTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCGCTGTCTCAAATGTGGACTCAGCGAAATTGAATTGTC
+ TGTGAAGATCAGACTTCCCGCGGTTAGACGGAAGACCCCAGCACCTTTACTATAGCTTCGCACTGGCATCAGGATTGCGATGTGCAGGATAGGTGGTAGG
+ CATCGAAGCGGGGACGCCAGTTCCCGTGGAGCCTCCTGAGATACCACCCTTCGCACTCTTATGTCTAACCGCGATTCCGGGACCCTGCGTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGAAGGTTGGCTCAGAGCGGTCGGAAATCGCTCGTCGAGTGCAATGGCAGAAGCCAGCC
+ TGACTGCAAGACTGACAGTGAGCAGAGACGAAAGGGCCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACGCTGGGATA
+ ACAGGCTGATGATGCCCAAGAGTCCATATCGACGGCATGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGTGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGATATTGAGAGGATTGCCCCTAGTA
+ CGAGAGGACCGGGGTGAACGTTCACTGGTGGACCAGTTATCGTGCCAACGTATGCTGGGTAGCTATGACGGCAGGATAAACGCTGAAGCATCTAAGCGTA
+ AGCCCCCTAAAAAAGGTATCCCAGAGCCGTGGAAGACCACACGTGATGGCCGG
+
+Thermotoga GTACTAAGGCACGCGGTGGATGCCTTGGCGGCGAGGCGATGAAGGGCGTGGCAACTGCGATAAGCCCGGGGGAGCCGCAAGAGGCGTGATCCCGGGATTC
+ CCGAATGGCCGAAAGTCGAACCGGGGGAGTGAAACATCTCAGTACCCCGGGAAAAGAAATCAACGAGATTCCCCTAGTAGCGGCGAGCGAACGGGGAGGA
+ GCCCGGATCTAGCCGAACCACCTGGGAAGTGGGCCGAGAGGTGAAGCCCCGTAGCAAGCCCGAGTCCACGGGACACGTGGAATCCCGTGGGAAGCTGGGG
+ GGACCACCCTCCAAGGCTAAATACTACCGCCGTCCGATAGCGCACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGCGTGCCT
+ ACAAAAGTCGGAGCCCTGGGTGACGGGTGCCTTTTGATTAATGAGCCCGCGAGTTGCCGTCGGTGGCGGGTTAAGCGGGTAGCCGTAGCGAGCGGTCCGA
+ ACAGGGCGCAGTCACCGGCGGCAGACCCAAGCCGGTGAGCTACCCCTGGGCAGGTGAAGGTGGGTAAAACCCACTGGAGGCCCGAAGGTGGACAGTGAAA
+ AGTCCCGGATGACTGGGGTAGGAGTGAAAAGCTAACCGAACCCGTGATAGCTGGTCTCCCCGAAATGCATTGAGGTGCAGCCTCGGGCTGTGCAGGGGTA
+ GAGCACTGATGGGGCTAGGGGGTCTCGAACCCCGTCAAACTCCGAATCCCTGACCCCGGGAGTGAGCCGCGGGGGATAAGCTCCGCGGACGAGAGGGGAA
+ CAACCCAGACCGCCGGCTAAGGCCCGAAGGTGGCTAAGTGGAAAGGATGTGAGCGCCTAAGACAGCTGGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAACAGCTCACCAGCCGAGGCGCTCCCGAAAATGTCGGCTAAGCCACCCCCCGAAGCCGCGGGTCTGCGGTAGGGGAGCTTTCCGCTAGGGTAAGGCG
+ ACCCGCGAGGCCGCTGGACGAGGCGGAAGTGAGAATGGGGCATGAGTAGCGAAGGAGGGTGAGAATCCCTCCCCCCGTAAGCCCAAGGTACCTGGGGAAG
+ TTCGTCCGCCCAGGGTTAGCCGGGCCCTAAGGTGAACCCGAAGGTAGCCGAAGGGAAGCCGGTAATATTCGGCGCGTGACGCAGAGGGTAGGCGCGGGGG
+ TGGCCCTCGCTCCTGCCGAGAAAAACCCCGTTCCAAACCGACACAGGTGGGCGGCTGAGAAGGCTCAGGGGGCGGGTTAACCCTCGCCAAGGAACTCGGC
+ AAATTGGCCCCGTAACTTCGGGAGAAGGGGTGCCGCCAGCGTCGCAGTGACAGGCCCGGGACTGTTTACCAAAAACACAGGCTCTGCTAACTCGAAAGAG
+ AAGTATAGGGACTGACGCCTGCCCAGTGCCGGAAGGTTAAGGGGAGGGGTTTGGTCCGACCCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCATGAATGGCGTAACGACTGGGGCACTGTCTCGGCGGGGGGCCCGGCGAAATTTCAGTCTG
+ GGTGAAGATCCCAGTACCCGCGGCTAGACGGAAGACCCCGGGAGCTTTACTGCAGCCTGGTATTGGGCTCTGGTGCATCGTGTATAGCATAGGTGGGAGG
+ CTGTGAAGCCGCCTCGCCAGGGGCGGTGGAGCCCCATGGAATACCACCCTCGGTGCACTGAGTCCTAACCTGAAGGTGGGGACAGTGCCAGGTGGGCAGT
+ TTGACTGGGGCGGTCACCTCCTAAAAGGTAACGGAGGTGTGCAAAGGTCGGCTCAGGTGGGTTGGAAATCCACCGCAGAGTGCAAGGGCATAAGCCGGCC
+ TGACTGCGAGGCCGACAGCGAGCAGGGGGGAAACGGCCCTAGTGACCCGGCGGTCCCGGTGGAAGGGCCGTCGATCAACGGATAAAGTTACCCCGGGATA
+ ACAGGCTGGTCCCGCCCGAGAGTTCACATCGACGGCGGGTTCGGCACCTCGATGTCGGCTCATCCCATCCTGGGGCTGAAGCAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGGGGTACGTGAGCTGGGTTCAGACCGTGTGAGACAGGTCGGTCCCTATCTGCCGCGGGCGTAGGAGGTTGAGGGGGTCCTCCCTTGTA
+ CGAGAGGACCGGGAGGAGGGGGCTCTGGTGTACCGGCTGTCGCGCCAGCGCACGCCGGGTAGCTACGCCCTAGCGATAACCGCTGAAACATCTAAGCGGA
+ AGCGCCCCAAGATAGGCCTCCCAGGCCGGTCCGAGAAGAGACCTGATGGCCGG
+
+Vibrio at cholerae TGACTAAGGTACACGGTGGATGCCTGGGCAGTCAGGCGATGAAGGACGTACTAATTGCGATAAGCGCAGATAAGGCAGTAAAGCCTTGAGTCTGCGATTT
+ CCGAATGCTGACATAGGCAACCGGGGGACTGAAACATCTAAGTACCCCGGGAGAAGAAATCAACGAGATTCCGGTAGTAGCGGCGAGCGAACCTGGATTA
+ GCCCTAAAGTAGGTGAACAAGCTGGAAACTTGGCGTACAGGTGAAGCCCCGTACCCGCATCGAGTGGGCGGGACACGTGATATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCTGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTAGGAGCACGGTGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATATTCAGTGGCAGGTTAACTAGGGAGCCGCAGCGAGCGGTCTTA
+ ACTGGGCGCAGTCTCTGGATATAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTTGATAACATCAACTGGAGGACCGAAGACTAATGTTGAAA
+ AATTACGGATGACTGTGCTAGGGGTGAAAGGCCAATCAAACTCGAGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTACGATACTACTGGGGTA
+ GAGCACTGTTAAGGCTAGGGTTCACTAACCCTTTGCAAACTCCGAATACCAGTATCCGGGAGACACACGCGGGTGCTAACGTCCGTCGTGGAGAGGGAAA
+ CAACCCAGACCGACAGCTAAGTCCCAAAGTTTGCTAAGTGGAAACGATGTGGAAGGCTCACACAGCTAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTAGTCGAGTCGGTCCGGAAGATGTCGGCTAAGCAATACACCGAAGCTGCGGCATTTGGGTAGGGGAGCGTTCTGTACCGTTAAGGTG
+ AATCGTAAGTTTGCTGGAGGTATCACAAGTGCGAATGTGACATGAGTAACGAAAGGGGGTGAAAAACCTCCTCGCCGGAAGACCAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGTCGACCCCTAAGGTGAGGCCGAACGTAATCGATGGGAAACGGGTAATATTCCGTACGGGACGGAGAGGCTAGGTGGCCAGA
+ CGGCTGGCATTCCTTTCAGGAAAAGCATCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATGGTACCGTAACTTCGGGAGAAGGTACGCTCTTCGGGTCGCAGATACCGGTGGTGAACTGTTTATTAAAAACACAGCCTGTGCAAAATCGCAAGAT
+ ACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTCAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCACGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGC
+ TGTGAAGATCAGTGTACCCGCGGCTAGACGGAAGACCCCGGAACCTTTACTACAGCTTGGCACTGAACATTGAACCTACATGTGTAGGATAGGTGGGAGG
+ CTATGAAGACGTGACGCCAGTTGCGTTGGAGCCTCCTGAAATACCACCCTTGTATGTTTGTGTTCTAACTTAGATTTGAGGACAGTGCCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGCACGAAGGTGGGCTAATCACGGTTGGACATCGTGAGGTTAGTGCAATGGCATAAGCCCGCT
+ TAACTGCGAGAATGACGTTGAGCAGGTGCGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGTTGGAAGTTGAAGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGAACTCTGGTGTTCGGGTTGTGTCGCCAGACCATGCCCGGTAGCTAAGTCGGATTGATAAGCGCTGAAACATCTAAGCGCA
+ AGCGACCCGAGAGAGTCTTCCCAGGGTTGTTCGAGACTAGACGTGATGGCAGG
+
+Nannocystis GTAGAAAGGCACACGGTGGATGCCTTGGCACCAAGGCGACGAAGGACGCGGCTACTGCGAAAAGCTACGGGGAACTGGAAGGAGTGTGATCCGTAGATGT
+ CCGAATGTCCACATGAGCGACGGAGGGACTGAAACATCTAAGTACCTCCGGAGAAGAAATCAATGAGACTCCGCTAGTAGTGGCGAGCGAATGCGGATTA
+ GCCCGGGGCTAGCAGAACGGCCTGGGAAGCCGGCCTAGAGGTGAAGCCCGGTAGCAAGCCCGAGTAGGCGGGACACGAGAAACCCTGTCTGAAGCTGGGA
+ GGACCATCTTCCAAGGCTAAGTACTCTTGGTGACCGATAGCGTAGAGTACCGTGAGGAAAGGTGAAAAGACCTGAGTGAAAAGACTGAAACCGTGTGTTT
+ ACAACAGTCGGAGAGCAGCTCGACGGGTACCTTTTGCATCATGAGCCAACGAGTTGTGGTCAGCGGCAGGTTAAGATGGAAGCCGAAGCGAGCAGTCTGA
+ GAAGGGCGAAGTCGCTGGTTACAGACCCAAACTTGTGATCTATCCATGAGCAGCTGAAGCGCGGTAAGACTGCGTGGAGGGCCGAACACCACAGTTGAAA
+ ATGTGGGGATGACTGTGATAGGAGTGAAAGGCTAATCAAACTGGAGATAGCTGGTCTCGCCGAAACATATTGAGGTATGGGGTCAGTTTGCATCGGGGTA
+ GAGCACTGGATGGGCTAGGGACCTCTAAACCCAACCAAACTCCGAATACCGAAAGCTGGCACTCAGGCGTGAGAGCTAAGTTTCATTGCCGAGAGGGAAA
+ GAACCCAGACCGGCAGCTAAGTCCCCAATCTCACTAAGTGGAAAGGATGTGGAGCACTCAGACAGCCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCGAGTGAACCCCGAAAATTCCGGCTAAGTGATGAACCGAAGCTCCGGGTAAGCGGTAGGCGAGTATTGTCTGGCGGTAATGCG
+ TACGGAAAGAGCGTTGGAGTGCAGACAAGAGCTGATGTGGCATGAGTAGCGAAACCGGGTGAAAAACCCGGTCGCCGTAAACCCGAGGTTCCTGGGTAAG
+ ATCATCTTCTCAGGGTTAGTCGGTCCCTAAGGCGAGGCAGAACGTAGTCGATGGGAAGCAGGGAACATTCTGCACGGGACGGAGAGGATAGCCGACGACT
+ TGGGTCGCGGTCCTTCCAAGAAAAGCACCGTACCAAACCGACACAGGTGGGTGGGAGAACATCCCAAGGCGTTGAGAGAACTCGGGTTAAGGAACTCGGC
+ AAATTGACACCGTAACTTCGGGAGAAGGTGTGCCCTTCGGGTTGCAGAGAATGGGGGAGGACTGTTTACCAAAAACACAGGCTCTGCGAAGTCGCAAGAC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAACAGGAGATGTCAAGATCGAATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGGCGGGTAAGTTCCGTCCTGCACGAATGGCGTAACGACTTCCCCACTGTCTCGACCCGGGACTCAGCGAAATTGAAATCGG
+ GGTGAAGATCCCCGTACCCGCGGCAAGACGGAAGACCCCGGAACCTTTACTGCAGCTTGGCACTGGTTTTCGGACTTGTCTGTGTAGGATAGGTGGGAGG
+ CTATGATGTGGGGCCGCTAGGTTCCACGGAGCCACGTGAAATACCACCCTGAGAAGTCTGAAGCCTAACCGTGAGTCCGGGACACTGCCTGGTGGGTAGT
+ TTGACTGGGGCGGTCACCTCCGAAAGAGTAACGGAGGCGCGCAAAGGTTCCCTCAGGCTGATTGGAAACCAGCCGAAGAGTGTAAAGGCATAAGGGAGCT
+ TGACTGCGACTCATACAGAGAGCAGGCACGAAAGGGCCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTTATCACGCCCAAGAGTTCACATCGACGGCGTGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGTAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGCGAGCTGGGTTCAAAACGTGTGAGACAGTTTGGTCCCTATCTGCCGTGGGCGCAGGAATTTGAGTGGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACAGACCCTGGTGTTCCGGTTGTTTTGCCAAGACACGCCGGGTAGCCATGTTGGACGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCACCAAAGAGAGGATTCCCAGGTCCGTCGTAGACGACACGTAATGGCCGG
+
+Rhodobacter CGGAGAAGGCGTTTGGTGGATGCCTTGGCAGCAAGGCGATGAAGGACGTGATACCTGCGATAAGTCATGGGGAGCTGAGAAAAGCTTGATCCATGAATTT
+ CCGAATGTTTACATAGGCGACCCGGGGACTGAAACATCTAAGTACCCGGGGAAAGGAAATCAACGATACTCCGTTAGTAGTGGCGAGCGAACGCGGACCA
+ GCCGGTGAACAGTGGAATGGTCTGGAAAGCCAGCGATATGGTGAAGCCCCGTAACAGTCATAAGTGGGCGGGACACGTGTAATCCTGTCTGAAGATCGGG
+ GGACCACCCTCGAAGGCTAAGTACTCTTGCTGACCGATAGCGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAACCGGACGCCT
+ ACAACAGTCGGAGCTTTAAGTGACGGGTACCTTTTGTATAATGGGTCAACGACTTGGTCTTACGAGCAGCTTAAGATGGTAGGCGCAGCGAGCGGTCTTA
+ AAAGGGCGGAGTTCGTGGGATCAGACCCAAACCGATGATCTAGCCATGTCCAGATGAAGGTTGGTAACACCAACTGGAGGTCCGAAGACACCCGTTGAAA
+ AGGGTCGGATGAGTGTGCTAGGGGTGAAAGGCCAATCAAATCTGAGATAGCTGGTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGGATACCTGCGGGGTA
+ GAGCACTACATGGATGAGGGGCCCCTAAGTCTAAGTAAACTCCGAATACCGCTATCCGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAA
+ CAACCCTGACCAACAGCTAAGCCCCCAATCTGGCTAAGTGGAAAGCATGTGGATTTCCAAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGATAG
+ CGTAACAGCTCACTGGTCTAGAGATCCGCGAAGATGTCGGCTAAGCCACGAGCCGAAGCTTTGGATAAGTGGTAGCGGAGCGTTCTGTGACTGTAAGCCG
+ GCCTGTGAGGCCGGTGGAGTGATCAGAAGCGAGAATGTGACATGAGTAGCGAAAGAGGGTGAGAGACCCTCTCGCCGAAAGTCCAAGGTTCCTGCTTAAG
+ CTAATCTGAGCAGGGTAAGCCGGCCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAACCACGTAATATTGTGGGCGTGACGGATGCTCACGTTGTCGACA
+ TCGGTCGCAGCTGTCCCAGGAAATACACCGTACCAAACCGACACAGGTGGACGGTAGAGTATACCAAGGCGTTGAGAGAACCACGTTTAAGGAACTCGGC
+ AAAATGCCTCCGTAAGTTCGCGAGAAGGAGGCCCCACAGGGGGGGACAAACTGGGGGGGGACTGTTTACTTAAAACACAGGCTCTGCGAAGCCGTAAGGC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAAAAGGAGGGGTCAAGTCCGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATCTCCCCGCTGTCTCAAACGTGGACTCAGCGAAATTGAACTGTG
+ TGTCAAGATCACACTACCCGCGGTTAGACGGAAGACCCCAGAACCTTTACTCCAGCTTTGCACTGGCATCAGGATTGTGATGTGCAGGATAGGTGGTAGC
+ CTTTGAAACCGTGACGCCAGTTGCGGTGGAGGCCCCTGAGATACCACCCTTCGCACTCTTATGTCTAACCGCGATTCCGGGACCCTGCATGGTGGGGAGT
+ TTGACTGGGGCGGTCGCCTCCCAAATCGTAACGGAGGCGCGCGAAGGTAGGCTCAGACCGGTCGGAAATCGGTCGTTGAGTGCAATGGCAAAAGCCTGCC
+ TGACTGCAAGACTGACAGTGAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTCCCAGTGGGAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATGATGCCCAAGAGTCCATATCGACGGCATGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGTGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGATATTGAGAGGATTGCCCCTAGTA
+ CGAGAGGACCGGGGTGAACGTTCACTGGTGGACCAGTTATCGTGCCAACGTATGCTGGGTAGCTATGACGGCAGGATAAACGCTGAAGCATCTAAGCGTA
+ AGCCCCCTAAAACAGGTATCCCAGGGCCGTGGAAGACCACACGTGATGGCCGG
+
+Streptomyces at coelico TTTTTAAGGCGCACGGTGGATGCCTTGGCACCAAACCGATGAAGGACGTGGGAGCCACGATAGGCCCCGGGGAGTCGCAACAGGCTTGATCCGGGGGTGT
+ CCGAATGCCCACATGGGGGACGCGGGGAGTGAAACATCTCAGTACCCGCGGAAGAGAAAACAACGTGATTCCGGGAGTAGTGGCGAGCGAAACCGGATGA
+ GGCCGGATGTAGGCGAAGACATGCGAAAGTCCGGCTAGAGGTAAACCCCCGTATCAACCCCAAGTGCACGGGGCCCGAGAAATCCCGTGTGAATCTGGCG
+ GGACCACCCGCTAAGCCTAAATATTCCTGGTGACCGATAGCGGATAGTACCGTGAGGAATGGTGAAAAGTGCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAACCGTGGGAGCGTTTCGTGACTGGTGCCTTTTGAAGAATGAGCCTGCGAGTTTGGGTGTGTTGCGGGTTAACAGGGAAGCCGTAGCGAGCGGTCCGA
+ ATAGGGCGTAGTAGCACGCTCAAGACCCAAGCGAGTGATCTAGCCATGGGCAGTTGAAGCGGCTTAAGAGGTCGTGGAGGACCGAACACCAGGGTTGAAA
+ ACCTGGGGATGACTGTGTTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCGTGTTCTGCCGAGGTA
+ GAGCACTGGATAGGCGAGGCCTCGGTAACCTTAGCCAAACTCCGAATGCCGGAGCGCGGCAGTGAGACGTGGGGGATAAGCTCCATGGTCGAGAGGGAAA
+ CAGCCCAGAGCATCGACTAAGCCCCTAAGGACGCTAAGTGGAAAGGATGTGAGTCGCACAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCTAGTGATTCCCGACAATGTCGGCTAAGCGTACCGCCGAAGTCGTGTCAAATGGGTAGGGGAGCGTCGTGTGCGGGTAAGCAG
+ CCGCGGAACGGTTGTGGACGGTTCACGAGTGAGAATGAGGCATGAGTAGCGAACAAACGTGAGAAACGTTTGCGCCGATTGACTAAGGTTCCTGGGTCAG
+ CTGATCTGCCCAGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGATAACCGGTGATATTCGGTACGTGACGCAGAAGGTAGTCCACCCGG
+ TGGCGGGGGATTCTGTCGAGAAAAGCCCCGTACCAAACCGACTCAGGTGGTCGGTAGAGAATACCGAGGCGTCGGGTGAACTATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCACTTGTGCCGCAGAGACCGCGAGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGCCGTAAGGC
+ ATGTATACGGACTGACGCCTGCCCGGTGCTGGAACGTTAAGGGGACCGGTTCGGTGAGAACTTAAGCGCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCTCGACTGTCTCAACCATAGGCCCGGTGAAATTGCACTACG
+ AGTAAAGATCTCGTTTCGCGCAGCAGGACGGAAGACCCCGGGACCTTTACTACAGTTTGATATTGGTGTTCGGTTCGGCTTGTGTAGGATAGCTGGGAGA
+ CTTTGAAGCTCGCACGCCAGTGTGGGTGGAGTCTCGTGAAATACCAGTCTGGTCGTGCTGATGTCTAACCTGGATTCAGGGACAGTGTCTGATGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGTAAGTGCACAAGGGAGCT
+ TGACTGTGAGACCGACGGTGAGCAGGGACGAAAGGGGACTAGTGATCCGGCGGTGGCTGTGGAAGCGCCGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCCGCTGTGCGCGTAGGAGTTTGAGAAGGCTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTGTGCCAGTTGTCCTGCCAAGGCAGGCTGGTTGGCTACGTCGGAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTCTTGAGAGAGGACTCCCAGGCTCCCAGTAGACGACGGGTGATGGCCGG
+
+Campylobacter at jejuni CTACTAAGGCGAATGGTGGATGCCTTGACTGGTAGGCGATGAAGGACGTACTAGCTGCGATAAGCTACGGGGAGCTGTCAAAAGCTTGATCCGTAGATTT
+ CCGAATGCCTATATGGGCGACGAGGGGATTGAAACATCTTAGTACCCTCGGAAAAGAAATCAATGAGATTGCGTCAGTAGCGGCGAGCGAAAGCGCAAGA
+ GGGCGGATTTAGCAGAACATTCTGGAAATATAGCCTAGAGGTGAAGTCCCGTAGCAAACCTGAGTGGGCGGGACACGAGGAATCCTGTCTGAATCCGGGT
+ CGACCACGATCCAACCCTAAATACTATACCAGATCGATAGTGCAAAGTACCGTGAGGAAAGGTGAAAAGAGAGAAGTGAAAAGACTGAAACCATTTGCTT
+ ACAACATTCAGAGCACCGTGTGATGGCTGCCTTTTGCATAATGAGCCTGCGAGTTGTGGTGTCTGGCAGGTTAAGAAGGAAGCCGTAGCGAGCGGTCTGA
+ ATAGGGCGTAGTCAGATGCTGCAGACCCAAACGAGTGATCTATCCATGAGCAGTTGAAGCTAGTTAAGAACTAGTGGAGGACTGAACATAGGCGTTGAAA
+ AGCCCGGGATGACTGTGATAGGGGTGAAAGGCCAATCAAACTTGTGATAGCTGGTCTCTCCGAAATATATTTAGGTATAGCGTTGTGAATATAAGGGGTA
+ GAGCACTGAATGGGCTAGCATCCATGAAACCCTATCAAACTCCGAATACCTTTGCACAGCAGTCAGGCGCGAGTGATAAAATCCGTCGTCAAGAGGGAAA
+ CAACCCAGACTACCAGCTAAGTCCCTAAACTACTTAAGTGGAAACGATGTAAGTTACTTAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCTAGTGATTTCGGAAAATATCGGCTAAAGTAAGTACCGAAGCTGTAGACTTGTGGTAGGAGAGCGTTCTATTGCGTCAAGGTA
+ TACCGTAAGAGTGCTGGAGCGAATAGAAGTGAGCATGAGGCATGAGTAGCGAATTAATGTGAGAATCATTAACGCCGTAAACCCAAGGTTCCTACGCGAG
+ CTCGTCATCGTAGGGTTAGTCGGGTCCTAAGTCGAGTCCGAAGGTAGACGATGGCAAATTGGTAATATTCAATACAGGACGCTTGGGCTAAGGGGCTAGA
+ TGGCTAGCCCTCGAGCCAAGAAAAGTCCCGTACCAAACCGACACAGGTGGGTGGGAGAGTATTCTAAGGCGGTGGAAGAACTCTCTTTAAGGAACTCTGC
+ AAAATAGCACCGTATCTTCGGTATAAGGTGTGGTTATAAACTTACAACAAAGGTCCCCCGACTGTTTACCAAAAACACAGCCTCTGCTAACTCGTAAGAG
+ ATGTATAGGGTGTGACGCCTGCCCGGTGCTCGAAGGTTAATTGATGGGGTTTAGTCTTGATCGAAGCCCGAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGTTAAATACCGACCTGCATGAATGGCGTAACGAGATGGGAGCTGTCTCAAAGAGGGATCCAGTGAAATTGTAGTGGA
+ GGTGAAAATCCTCCTACCCGCGGCAAGACGGAAGACCCCGGGACCTTTACTACAGCTTGACACTGCTACTTGGATAAGAATGTGCAGGATAGGTGGGAGG
+ CTTTGAGTATATGACGCCAGTTGTATATGAGCCTTGTGAGATACCACTCTTTCTTATTTGGTAGCTAACCAGCATAGTGGGACAATGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCCAAATAATAACGGAGGCTTACAAAGGTTGGCTCAGAACGGTTGGAAATCGTTCGTAGAGTATAAAGGTATAAGCCAGCT
+ TAACTGCAAGACATACAGTAAGCAGAGACGAAAGGGTCTTAGTGATCCGGTGGTTCTGGTGGAAGGGCCATCGCTCAAAGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGTAAGAAGTTGAAGAGATTGACCCTAGTA
+ CGAGAGGACCGGGTTGAACAAACACTGGTGTAGCTGTTGTTCTGCCAAGACACGCAGCGTAGCTAAGTTGGAAGGATAAACGCTGAAACATCTAAGCGTA
+ AGCCACTCAAGAGAATCTTCTCAGCTCTCTAGAAGACTACAGTTGATGGCTGG
+
+Rhodobacter at sphaeroi CGGAAAAGGCGTTTGGTGGATGCCTAGGCAGCAAGGCGATGAAGGACGTGATACCTGCGTTAAGCCATGGGGAGCCGGGAAGGGCTTGATCCATGGATGT
+ CCGAATGCTTACATGAGCGACCCGGGGACTGAAACATCTAAGTACCCGGGGAAAGGAAATCAACGAGACTCCGCTAGTAGTGGCGAGCGAACGCGGACCA
+ GCCGCTCAGTACTGGAATGGCCTGGAAAGCCAGCCCAGCGGTGAAGCCCCGTAAGAGCTATAAGTGGGCGGGACACGTGAAATCCTGTCTGAAGATCGGG
+ GGACCACCCCCGAAGGCTAAGTACTCTTGCTGACCGATAGCGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGGACGCCT
+ ACAACAGTCGGAGGGTTACCTGACGGGTACCTTTTGTATAATGGGTCAACGACTTGGTCTCACGAGCAGCTTAAGGTGGGAGGCGCAGCGAGCGGTCTTA
+ AAAGGGCGGAGTTCGTGGGATCAGACCCAAACCGGTGATCTAGCCATGAGCAGATGAAGTCAGGTAACACCTGATGGAGGTCCGAAAACACCCGTTGAAA
+ AGGGTTGGATGACTGTGCTAGGGGTGAAAGGCCAATCAAACCTGAGATAGCTGGTCTCCGCGAAAGCTATTTAGGTAGCGCCTCGGATACCTCGGGGGTA
+ GAGCACTGCATGGATGAGGGGCCCCTAAGTCTAAGCAAACTCCGAATACCCGTATCCGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAA
+ CAACCCTGACCTGCAGCTAAGCCCCCAATCTGGCTAAGTGGAAAGCATGTGGACGGCCAAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGATAG
+ CGTAACAGCTCACTGGTCTAGCTGTCCGCGAAGATGTCGGCTAAGCCACGAGCCGAAGCTCAGGATCAGTGGTAGCGGAGCGTTCCGTGTCTGTAAGCCG
+ GGCCGTAAGCCCGGTGGAGAGATCGGAAGCGAGAATGTGACATGAGTAGCGAAACAGGGTGAGAGACCCTGTCGCCGAAAGTCCAAGGTTCCTGCTTAAG
+ CTAATCTGAGCAGGGTAAGCCGGCCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAACCAGGTAATATTCTGGGCGTGACGGATCGCAGGGTAGTCGGTA
+ TCGACCGCTGCGGTCCCTGGAAATACACCGTACCAAACCGACACAGGTGGACGGTAGAGAATACCAAGGCGTTGAGAGAACCACATCAAAGGAACTCGGC
+ AAAATGCCTCCGTAAGTTCGCGAGAAGGAGGCCCCGCAGGGGGGCACAAACCGGGGGGGGACTGTTTACTTAAAACACAGGCTGTGCGAAGCCGCAAGGC
+ ACGTATACAGTCTGACGCCTGCCCGGTGCTGGAAGGTTAAAAGGAGGAGTCAAGTCCGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATCTCCCCGCTGTCTCTGATGTGGACTCAGCGAAATTGAACTGTG
+ TGTCAAGATCACACTTCCCGCGGTTAGACGGAAGACCCCAGAACCTTTACTATAGCTTCGCACTGGCATCAGGATTGTGATGTGCAGGATAGGTGGTAGG
+ CATCGAAGCGGGGACGCCAGTTCCCGTGGAGCCACCTGAGATACCACCCTTCGCCATCTTATGTCTAACCGCGATTCCGGGACCCTGCGTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCCAAACAGTAACGGAGGCGCGCGATGGTGGGCTCAGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCAGAAGCCCGCC
+ TGACTGCAAGACTGACAGTGAGCAGAGACGAAAGGGCCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATGATGCCCAAGAGTCCATATCGACGGCATGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGTGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGAGATTGAGAAGATTGCCCCTAGTA
+ CGAGAGGACCGGGGTGAACGATCACTGGTGGACCAGTTGTCGTGCCAACGCATGCTGGGTAGCTATGACGGCAGGATAACCGCTGAAGCATCTAAGCGGA
+ AGCCCCTTAAAAAAGGTCTCCCAGGGCCGTGGAAGACCACACGTGATGGCCAG
+
+Zymomonas TGGGTAAGGCATTTGGTGGATGCCTAGGCATACAGGCGATGAAGGACGTGGCACCTGCGATAAGCTACGGCGAGATGTGAGAATCTTGACCCGTAGATTT
+ CCGAATGTACACATGAGCGACCCGGCGACTGAAACATCTAAGTACCCGGGGAAAAGACATCAACGAGATTCCGTTAGTAGTGGCGAGCGAACGCGGAGTA
+ GGCCCCTGTTAGCAGAAGTCTTTGGAAAAGACACCTAGTGGTGAAGTCCCGTAGTAAATCTGAGTGGGCGGGGCACGTGAAACCTTGTCTGAACATGGGG
+ GGACCACCCTCCAAGCCTAAATACTCTGTATGACCGATAGTGAAAAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGTCTGAAACCGAATGCTT
+ ACAACAGTAGGAGGGTAGCCTGACTGGTACCTCTTGCATAATGGGTCTGTGACTTAATGTATCAAGCAGCTTAAGATGGTAGGCGCAGCAAGCGGTCTGA
+ ATAGGGCGTAGTTTGATGCATTAGACCCAAACCGGCGATCTAGGCATGGTCAGATGAAGGTAAGTAACACTTACTGGAGGTCCGAAGATTAACGTTGAAA
+ AGTTACGGATGAATGTTTTAGGGGTGAAAGGCCAATCAAGCCGGAAATAGCTGGTCTCCGCGAAAACTATTGAGGTAGTGCCTCATGGACCGTTGGGGTA
+ GAGCACTGGATGGATGCGGGTCGACCAAATCTAACCAAACTCCGAATACCAATTCATGGGAGACAGACGCGGGTGCTAAGGTCCGTCGTCGAGAGGGAAA
+ CAGCCCTGACCTACAGCTAAGTCCCCAAGCTGTCTAAGTGGAAAGCTTGTAAGACCCCAAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGGGTCTTGCGAAGATGTCGGCTAAGACATGCACCGAAGCTTAGGATTTATGGTAGCGGAGCGTTCCGTACCTGTAAGCAG
+ TCTGGTAAGGACTGTGGAGGTATCGGAAGTGCGAATGAGACATGAGTAGCGAAATAGGGTGAGATGCCCTATCGCCGAAAGTCCAAGGTTCCTGCGCAAG
+ CTAATCCGCGCAGGGTGAGTCGGCCCCTAAGACGAGCCCGAAGGTAGTCGATGGGAAACAGGTAATATTCTGTACGTGACGGATCGTGTAATTGTTGTCA
+ TCGGACACTCAGGTTCCAGGAAATACACCGTACCAAACCGACACAGGTGGACGGTAGAGTATACCAAGGCGTTGAGAGAAGGGTGTTGAAGGAACTCGGC
+ AAATTGCCTCCGTACCTTCGGAAGAAGGAGGCCCTTCATAGGGGCACAGGCCGGGGGAGGACTGTTTAGCAAAAACACAGGCTCTGCAAAGTCGCAAGAC
+ ACGTATAGGGCCTGACGCCTGCCCGGTGCTGGAAGGTTAAGTGGAGGAGTCAAGTCTGAAATGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCACTGTCTCCAACACCTGCTCAGCGAAATTGAATTCTC
+ CGTGAAGATCGGAGTACCCGCGGTTAGACGGAAGACCCCGGCACCTTTACTGCAGCTTCAGAGTGGCATTAGGAAAGAACTGTGTAGCATAGGTGGGAGG
+ CTTTGAAACTTGAGCGCCAGCTTGAGTGGAGCCTAGTGAAATACCACCCTGTTGTTTTCTATGTCTAACCTAGAATCAGGGACCCTCTGTGGCGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGATGGTTGGCTCAGGCCGGTTGGAAACCGGCTCAAGAGTGCAATGGCATAAGCCAGCC
+ TGACTGTGAGACTGACAGTGAACAGAGACGAAAGGGTCATAGTGATCCGGTGGTCCCTGTGGAAGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATAACCCCCAAGAGCTCATATCGACGGGGTGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGCAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGTGGTACGTGAGCTGGGTTCAGAACGTGCGAGACAGTTTGGTCCCTATCTGCCGTGGGCGTCGATATTTGAGAGGATTGCCCTTAGTA
+ CGAAAGGACCGGGGTGAACATGCTCTGGTGGACCTGTCGTGGCGCCAGCCCGAGCAGGGTAGCTATGCTGGCGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTCCTAAGATAAGATATCTAGAGCCGTCGAAGACTACACGTGATGGCCAG
+
+Brevundimonas CGTTGAAGGCTTCTGACGGATGCCTTGGCGTAGAGGCGATGAAAGACGTGGCAACTGCGATAAGAACCGGGGAGGCGCTAGACCCTTGATCCGGTTATCT
+ CTGAATGCAAACATTGGCGACCCGGGGACTGAAACATCTCAGTACCCGGGGAAAGGACATCAACGAGACTCCCGTAGTAGTGGCGAGCGAACCGGGACCA
+ GGCCTCTTAAAGTCGAACGGAATGGAAATCCGGCCTAGCGGTGAAGCCCCGTAACCAAACTGAGTGGGCGGGACACGTGAAATCCTGTCTGAACATGGGG
+ GGACCACCCTCCAAGCCTAAGTACTCTCTACGACCGATAGTGAAAAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAATCGGAAGCCT
+ ACAACAGTCGGAGCCGACGGTGACGGGTACCTTTTGTATAATGGGTCAGCGACTTCATGTGTCGAGCAGCTTAAGTTGGTAGGCGCAGCGAGCGGTCTGA
+ ATAGGGCGAAGTTCGACGTATGAGACCCAAACCGGTGATCTATCCATGAGCAGATGAAGGTAAGTAACACTTACTGGAGGTCCGAACGTGAATGTTGAAA
+ AATTCGGGATGACTGTGATAGGGGTGAAAGGCCAATCAAACCTGACATAGCTGGTCTCCGCGAAATCTATTTAGGTAGAGCGTCCGATACCCTGGGGGTA
+ GAGCACTGGATGGTTGCGCTGCACGGAATACTAACCAAACTCCGAATACCCATATCGGGCAGACACACGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAA
+ CAACCCTAACCATCATCTAAGCCCCCAAGCTGGCTAAGTGGAAACGATGTGGATTGCTTTGACAATCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGATCAAGCGATCCCGGAAAATGTCGGCTAAGCCATGCGCCGAAGATATGGGTTTGCGGTAGCGGAGCGTTCCGTACCTGTAAGGTC
+ AACTGTGAGTTGGCTGGAGGTATCGGAAGTGAGAATGTGACATGAGTAACGAAACAGTGTGAGAAACACTGTCGCCGAAAGACCAAGGTTCCTGCGTAAG
+ CTAATCTGCGCAGGGTTAGTCGGCCCCTAAGGCGAGGCTGAACGTAGTCGATGGGAAGCAGGTAATATTCTGCACGTGACGGATGGCATAGTCGTGGGGA
+ TTGTTCCCGGTTGTCCCTGGAAATACACCGTACCAAACCGACACAGGTGGTCGGTAGAGTATACCAAGGCGTTGAGAGAACTGTGCTGAAGGAACTCGGC
+ AAATTGCACGCGTAACTTCGGAATAAGCGTGACTCACACGGTGGCACAAGCCGGGGGAGGACTGTTTAGCAAAAACATAGGCTCTGCGAAGCATCAATGC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCCTGAAGGTTAAAGGGAGGAGTAAAGTCCGAACTGAAGCCCAGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCACTGTCTCCAGCACAGGCTCAGTGAAATTGAATTCCC
+ CGTGAAGATCGGGGTTCCCGCGGTCAGACGGAAGACCCTAGAACCTTTACTATAGCTTCGCCTTGGCGTTAGCGACCGTATGTGTAGGATAGGTGGGAGG
+ CTATGAAGCCGGGGCGCCAGCTCTGGTGGAGCCTCCTGAAATACCACCCTTACTGTCGTTACGTCTAACCGAGATCCCGGGACATGGCGTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAGTGTAACGGAGGCGCGCGATGGTTAGCTCAGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCATAAGCTAGCC
+ TGACTGCGAGACTGACAGTGAGCAGAGACGAAAGGGCCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTAGGATA
+ ACAGGCTGATTTTGCCCAAGAGTCCATATCGACGGCAAGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGTGAGCTGGGTTCAGAACGTGTGAGACAGTTTGGTCCCTATCTGCCGTGGGTGTTCGAAGTTGAGAGGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACATACTCTGGTGGACCTGTCATGGCGCCAGCCTGAGCAGGGTAGCTAAGTTGGATAGATAACCGCTGAAACATCTAAGCGGA
+ AACTACCTAAAAAAGGCTTCGCAGGATCGTGGAAGACTACACGTGATGGCCAG
+
+Listeria at monocytogen TTAGAAAGGCGCACGGTGGATGCCTTGGCACTAAGCCGAAGAAGGACGGGACTACACCGATATGCTTTGGGGAGCTGTACGAAGCGTGATCCAGAGATTT
+ CCGAATGTCCACATGAGCAACCCAGGGACTGAAACATCTAAGTACCTGGGGAAGAGAAAGAAAATCGATTTCCTGAGTAGCGGCGAGCGAAACGGAAAGA
+ GCCCGGATATAAATGAAGGGTCTGGAAAGCCCGCCAAGAGGTAAAGCCCGGTATTAATCCTGAGTCGGCGGAACACGTGAAATTCCGTCGGAATCCGGGA
+ GGACCATCTCCCAAGGCTAAATACTCCTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAACCGTGTGCCT
+ ACAATAGTTAGAGCCCAGGGTGATAGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGATTTGTTGCAGGTTAAGAAGGGAGCCGTAGCGAGCGGTCTGA
+ ATAGGGCGAAGTAACAGGTCGTAGACCCAAACCGGTGATCTACCCATGTCCAGATGAAGGTAAGTAATACTTACTGGAGGTCCGAACACGCACGTTGAAA
+ AGTGCGGGATGAGTGTGGTAGCGGAGAAATTCCAATCGAACTTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCCTCGAGGAGTCATGAGGTA
+ GAGCACTGTTTGGACTAGGCCTTGGTAAATTCAGATAAACTCCGAATGCCATTTCTCGGGAGTCAGACGCGAGTGATAAGATCCGTAGTCGAAAGGGAAA
+ CAGCCCAGACCACCAGTTAAGTCCCCAAAAATGTTAAGTGGAAAGGATGTGGGTTGCTTAGACAACCAGGATGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTGACCCCCGAAAATGTCGGCTAAACATATTACCGAAACTGTGGATTTGTGGTAGGAGAGCGTTCTAAGGCGGTAAGTCA
+ GACCGGAAGACTGGTGGAGCGCTTAGAAGTGAGAATGCGGTATGAGTAGCGAAGAAGGGTGAGAATCCCTTCCACCGAATATCTAAGGTTCCTGAGGAAG
+ CTCGTCCGCTCAGGGTTAGTCGGGACCTAAGCCGAGGCCGAACGTAGGCGATGGACAACAGGTGAGATTCTGTACGTGACACAGAGGATAGGGAACGCAA
+ TGGTGCGTCCTCCTGTCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGATAGGAGAGAATCCTAAGGTGGCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCAGGGCCGCAGTGAATGGCCCAGGACTGTTTAGCAAAAACACAGGCTCTGCAAAACCGTAAGGT
+ ACGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGCTTCGGTACGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGCAACGATCTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTATAGTACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCGGGAGCTTTACTGCAACCTGATATGGAATGTTTGTACCGCTTGTACAGGATAGGTAGGAGC
+ CGAAGAGACGTGTGCGCTAGCATACGAGGAGGCATGTGGGATACTACCCTGGCTGTATGACATTCTAACCCGCAGGGGGAGACAGTGTCAGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGAATGGATGGAAATCATTCGCAGAGTGTAAAGGCACAAGGGAGCT
+ TGACTGCGAGACTGACAGTGAGCAGGGACGAAAGGGGCTTAGTGATCCGGTGGTTCCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCCGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTCCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACACACGCTGGTGTACCAGTTGTTCCGCCAGGACACGCTGGGTAGCTATGTTGGAGGGATAAACGCTGAAACATCTAAGCGTA
+ AGCCCCCTAAGAGAGATTTCCCAGATCCCTGAAAGATGATAGGTGATGGTTTG
+
+Erysipelothrix at rhusi TATGTAAGGCGTACGGTGGATGCCTAGGCACTAAGCTGATGAAGGACGCGATAACAGCGAAATGCCTCGGGGAGTGGTACGACACAAGATCCGGGGGTAT
+ CCGAATGCACACATTGGCAACCTTGTGATTGAAACATCTTAGTAACAAGGGAAAAGAAAACAAAGTGATTCCCTGAGTAGTGGCGAGCGAAACGGGAAGA
+ GCCCGGAGTTAGTCGAATGGCATTGAAAGCCAGTCAAGAGGTGCAACCCTGTAACAAGCCTGAGTCGGCGAGGCACGAGAAACCTTGTCGGAACCAGCCG
+ GGACCACCCGGTAAGGCTAAATACTCTTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGAGCGGAGTGAAAAGACTGAAACCGTATGCTT
+ ACAAAAGTCAGAGCCCAGGGTGATGGGTGCCTTTTGTAGAATGAACCGGCGAGTTACCATAATGTGCGGGTTAAGAAAGGAGCCGTAGCGAGCGGTCTGA
+ ATAGGGCGTAGTACATTGTGGTAGACCCAAACAAGTGATCTAGCCATGACCAGTTGAAGTTTGGTGAAACCAAATGGAGGACCGAAGACTGTCGTTGAAA
+ AGCCACGGATGAGTGTGCTAGCGGAGAAATTCCAATCGAACTTGATATAGCTGGTCTCCCCGAAATAGCTTTAGGGCTAGCGTCAATAGGCACTGAGGTA
+ GAGCACTGAATGTATGAGCCCTTGGGAAATATAATCAAACTCCGAATGCCAGTGGTTGGCAGTCAGACGTGGGTGATAAGGTCCATAGTCGAAAGGGAAA
+ CAGCCCAGATCGCCAGTTAAGTCCCAAAATATACTAAGTGGAAAGGATGTGGGATGCACAGACAACTAGGAGGTTGCTCAGAAGCAGCCTTTAAAGAGTG
+ CGTAACAGCTCACTAGTCGAGTGACCCCCGAAAATTTCGGCTAAGTATGATACCGAAACTGCGGATAAGTGGTAGGGGAGCGTTCTATAGCGTTAAGATG
+ TACCGTAAGAGCGTTGGAGCGTATAGAAGTGAGAATGCGGTGTGAGTAGCGAATGTCAGTGAGAATCTGACACACCGATTGCCTAAGGTTCCAGGGGAAG
+ CTCGTCCTCCCTGGGTAAGTCGGGACCTAAGATGAGGCTGAACGTAGTCGATGGACAACAGGTGATATTCTGTACATGACAGAGAGGCTAAGTTTCCAGC
+ TGGCTGGAACCCCTCTCAAGAAAAGTCCCGTACCAAACCGACACAGGTAGGCAGGAGAGAATCCTGAGGTGGCGAGAGAACTGTTGCCAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTAAGGGCCGCAGTGAAGGGCCCAAGACTGTTTAACTAAAACATAGCCTCTGCGAAGTCGCAAGAC
+ AAGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGATGTGTTCGGATTGAACTGAAGCCCCAGTGAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATTTGGGCGCTGTCTCGGCAGCAGACTCGGTGAAATCTTAGTACC
+ GGTAAAGATCCGGTTACCCGCAACTAGACGGAAGACCCCAGGAGCTTTACTGTAGCTTGATATTGAATTTTGATCCTACATGTACAGGATAGGTGGGAGA
+ CAATGAAGCATGCACGCTAGTGTATGTGGAGTCCCATGGGATACCACTCTTGTATGTTTGAATTCTAACCGCGATACCGGGAGAGTGTCAGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTACCCTCAGATTGGTTGGAAATCAATCGACGAGCGTAAAGGCAGAAGGGTGCT
+ TGACTGCGAGACCTACAGTGAGCAGGGACGAAAGGGGCTTAGTGATCCGGCGGTTCCGGTGGAAGGGCCGTCGCTTAACGGATAAAGCTACCCTGGGATA
+ ACAGGCTAATCTCGCCCAAGAGTTCACATCGACGGCGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGAGCTGAATTAGGTTCAAGGGTTGGCTG
+ TCCGCCCATAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGTTGTGGGCGTAGGAAATTGAGGAGCCTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACATACGCTGGTGTACCAGTTGTTCTGCCAAGACACGCTGGGTAGCTAAGTTGGCTGGATAAGCGCTGAAACATCTAAGCACA
+ AGCCACTCAAGAGAGATTTCCCAGACCCCTGAGAGACGATAGGTGATGGTCAG
+
+Bartonella TGCTTAAGGCATTTGGTGGATGCCTTGGCATGCAGGCGATGAAGGACGTGATACCTGCGATAAGCTACGGGGAGGTGCGAAACCCTTGATCCGTAGATTT
+ CCGAATGTCTAAATGAGCGACGCAGGGACTGAAACATCTAAGTACCTGTGGAAAGGACATCAACGAGACTCCGTTAGTAGTGGCGAGCGAACGCGGACCA
+ GGCCGCTAAAAGTAGAATCGATTGGAAATCGAACCAAGAGGTGAAGTCCCGTAACAAACCTGAGTAGGCGGGACACGTGAAATCCTGTCTGAACATGGGT
+ CGACCACGATCCAAGCCTAAGTACTCTGCATGACCGATAGCGCACAGTACCGTGAGGAAAGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCGAATGCCT
+ ACAACAGTCGGAGCCCTGGGTGACGGGTACCTTTTGTATAATGGGTCAGCGACTTAGTCTAACGAGCAGCTTAAGATGGTAGGCGTAGCGAGCGGTCTGA
+ ATAGGGCGCAGTTCGTTGGATTAGACCCAAACCAGTGATCTAGCCATGAGCAGCTGAAGGTAAGTAACACTTACTGGAGGGCCGAACGTATCTGTTGCAA
+ TAGATGGGATGACTGTGCTAGGGGTGAAAGGCCAATCAAACTCGAAATAGCTGGTCTCCGCGAAATCTATTTAGGTAGAGCGTTAGTTTCTCCAGGGGTA
+ GAGCACTGGATGGGCTAGGTCCCGATAAACCTAACCAAACTCCGAATACCTGAAACTGGCAGACACACGCGGGTGCTAACGTCCGTCGTGGAAAGGGCAA
+ CAACCCTAACCACCATCTAAGTCCCCAAGTTGGCTAAGTGGAAAGGATGTAGGATCCCAAAACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGGGTCTTCCGAAAATGTCGGCTAAGCCATACACCGAAGCTGTGGATTAGTGGTAGCGGAGCGTTCCGTACCTGTAAGGGG
+ ACTCGCGAAGCTCCTGGAGGTATCGGAAGTGAGAATGTGACATGAGTAACGAAAGGGAGTGAGAGACTCCCTCGCCGAAAGTCCAAGGTTCCTGCTTAAG
+ TTAATCTGAGCAGGGTGAGTCGGCCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAACCACGTAATATTGTGGACGTGACGGATTAGGAAATTGTAGGTA
+ TTGATCTCAGTAATCCCAGGAAATACACCGTACCAAACCGACACAGGTGGACGGTAGAGAATACCAAGGCGTTGAGAGAACTACGTTGAAGGAACTCGGC
+ AAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCTCAGGGTGGCACAGACCGGGGGAGGACTGTTTACCAAAAACACAGGCTCTGCGAAGTCGCAAGAC
+ ATGTATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGATGTCAAGATTGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCGCTGTCTCCAACGTAGACTCAGTGAAATTGAATTCCC
+ CGTGAAGATCGGGGTTCCTGCGGTTAGACGGAAGACCCCGGCACCTTTACTATAGCTTTACACTGGCATTTGTGTCGGCATGTGTAGGATAGGTGGTAGA
+ CTTTGAAGCAGGGGCGCTAGCCCTTGTGGAGTCTCCTGAAATACCACCCTTACCGACATGATGTCTAACTGCAATTTCAAGACAGTGTATGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGAAGGTAGGCTCAGAACGGTCGGAAATCGTTTGTTGAGTGCAATGGCATAAGCCTGCC
+ TGACTGTGAGACTGACAGTGAGCAGAGTCGAAAGGGTCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATGACCCCCAAGAGTCCATATCGACGGGGTGTTTGGCACCTCGATGTCGACTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGTGAGTTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGAATTTGACAGGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACGTATTCTGGTGGACCTGTTGTGGCGCCAGCCCAAGCAGGGTAGCTATATCGGCGGGATAACCGCTGAAGCATCTAAGCGGA
+ AACCCCCTAAAAGAGTATTCCCAGAACCGTGGTAGACCACACGTGATGGTCAG
+
+Chlamydophila at felis TTAGTAAGGCTATTGGCGGATGCCTTGGCATTGAGGCGATGAAGGATGCGTTTACTGCAGTAATCTTCGGCGAGCTGGTATAAGCTAGACCCGGAGGTCT
+ CCGAATGTTAACATAAGCGACCTGCTGACTGAAACATCTTAGTAAGCAGGGAAAAGAAATCAAAGAGATTCCCTGAGTAGCGGCGAGCGAAAGGGGATTA
+ GACCGGGTTTAGTTGAATCTTCTGGAAATAGAACGCACAGGTGAAGTCCCGTAACAAACCTGAGTGGGCTAGACACGTGAAACCTAGTCTGAATCTGGGG
+ AGACCACTCTCCAAGTCTAAATACTATCAATGACCTATAGTGAACAGTACTGTGAAGAAAGGTGAAAAGACTTGAGTGAAAAGACTGAAACCAATAGCTT
+ ATAACGGTCGAAGACCCGGTTGACGGGTGCCTTTTGCATGATGAGCCAGGGAGTTAAGTTAAACGGCGGGTTAAGTACGGAGCCGAAGCGAGCGGTTTTA
+ ATAGAGCGTAGTCGTTTGATTTAGACACAAACCAGTGAGCTATTTATGACCAGTTGAAGCGTGGTAAGACCTTGTGGAGGACCGAAAGTACATGTTGAAA
+ AATGTTGGATGAGTGTAATAGGGGTGAAAGGCCAATCAAACTTGAGATATCTTGTCTCTCCGAAATAACTTTAGGGTTAGCCTCGGAATTTTTTGGGGTA
+ GAGCACTGAATTCTAGCGGGCTCGCTAACGGAAATCAAACTCCGAATACCAAGATCCGGGAGATAGACGCGGGGGCTAAGCTTCGTTGTCGAGAGGGGAA
+ CAGCCCAGACCGCCGATTAAGTCCCAAATTATGCTAAGTGATAAGGAAGTGTGATTCTAAGACAGTTGGAATGTTGCTTAGAGGCAGCATTTAAAGAGTG
+ CGTAACAGCTCACCAATCGAGAATCATCCAATAATAACGGCTAAGCATAAAACCGACATCGCGGGTTAGCGGTAGGAGAGCGTAGCATTGCAGTAAGGTA
+ TACCGTAAGAGTGCTGGAGCGGATGCTAGTGAAGATCTGGCATAAGTAACGAAAGGAAGTGAAAATCTTCCTCGCCGTAAGCACAAGGTTCCAGGGTCAG
+ CTCGTCTTCCCTGGGTTAGTCGGCCCCTAAGTCGAGGCACAACGTAGACGATGGACAACAGGTAATATTCTGTACATGACGGAGACGTTAAGCACCGGAT
+ TGGTCCGGTGTCCTTTCAAGAAATATACCGTACCAAACCGACACAGGTGTGCAGATGAATATTCTAAGGCGGCGAGATAACTTTCGTTAAGGAACTCGGC
+ AAATTATCCCCGTAACTTCGGAAGAAGGGGAGCCTTTTGAGCCGCAGAGAAAGGCCCGGGACTGTTTAACAAAAACACAGCCTATGCAAACCTCTAAGGG
+ AAGTATATGGTGTGACGCCTGCCCAATGCCAAAAGGTTAAAGGAATATGTCAAGATTGAACCCAAGCCCTGGTGAATGGCCGCCGTAACTATAACGGTGC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGTGTAACGATCTGGGCACTGTCTCAACGAAAGACTCGGTGAAATTGTAGTAGC
+ AGTGAAGATCTGTTTACCCGCAAAAGGACGAAAGACCCCGGAACCTTTACTGTACTTTGGTATTGATTCTTGATTTGTTATGTGTAGCATAGCCAGGAGA
+ CTGTGAACACTCTTCGTTAGGAGAGTGGGAGTCTCGTGAAATACTGGTCTTAACAAGTTGGAGTCTAACATAAATATATGGACATTGCCAGACGGGCAGT
+ TTTACTGGGGCGGTATCCTCCTAAAAAGTAACGGAGGAGCCCAAAGCTTATTTCATCGTGGTTGGCAATCACGAGTAGAGCGTAAAGGTATAAAATAGGT
+ TGACTGTAAGACCTACAGTAAGCAGAGACGAAAGGGGCTTAGTGATCCGGCGGTGGAAGTGGAATCGCCGTCGCTTAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATCGCCACCAAGAGTTCATATCGACGTGGCGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGAAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGCGAGCTGGGTTCAAAACGTGTGAGACAGTTTGGTCTCTATCCTTTGTGGGCGCAGGATATTGAAAGGACTGTTCCTAGTA
+ CGAGAAGGCCGGAATGGACGAACAATGGTGTGTCGGTTGTTTTGCCAAAACAAGCCGAGTAGCTACGTCGGAAGGATAAGCATTGAAACATCTAAATGCA
+ AGCCTCCTAAGAAAGGTATCCCAGACTCCATATAGACTATTGGTGATGGTTGG
+
+Brucella TGCTTAAGGCATTTGGTGGATGCCTTGGCATGCAGGCGATGAAGGACGTGATACCTGCGATAAGCGTCGGGGAGGTGCGAAACCCTTGATCCGACGATTT
+ CCGAATGTCTACATGAGCGACCTGGGGACTGAAACATCTAAGTACCCAGGGAAAGGACATCAAAGAGACTCCGCTAGTAGTGGCGAGCGAACGCGGACCA
+ GGCCGCTTAAAGTGGAACGAGTTGGAAACTCGACCAAGTGGTGAAGTCCCGTAACAGACCTGAGTGGGCGGGACACGTGAAATCCTGTCTGAACATGGGT
+ CGACCACGATCCAAGCCTAAGTACTCTGCATGACCGATAGCGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGGATGCCT
+ ACAACAGTTGGAGCCCTGGGTGACAGGTACCTTTTGTATAATGGGTCAGCGACTTAGTGTATCGAGCAGCTTAAGGTGGTAGGCGCAGCGAGCGGTCTGA
+ ACAGGGCGCAGTTCGATGCATTAGACCCAAACCAGTGATCTAGCCATGAGCAGTTGAAGGTACGTAACACGTACTGGAGGACCGAACATATCTGTTGCAA
+ TAGATGGGATGACTGTGCTAGGGGTGAAAGGCCAATCAAACTTGAGATAGCTGGTCTCCGCGAAATCTATTTAGGTAGAGCGTCGACTACCCCCGGGGTA
+ GAGCACTGGATGGGCTAGGGACCTCTAATCCTAACCAAACTCCGAATACCGGTAGTCGGCAGACACACGCGGGTGCTAACGTCCGTCGTGGAGAGGGCAA
+ CAACCCTGACCACCATCTAAGTCCCTAAGTTGGCTAAGTGGAAAGGATGTAGGATCCCAAAACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGGGTCTTCCGAAAATGTCGGCTAAGCCATACACCGAAGCTGTGGATTAGTGGTAGCGGAGCGTTCCGTACCTGTAAGGGC
+ AGTCGTGAACATCCTGGAGGTATCGGAAGTGAGAATGTGACATGAGTAACGAAAGGGAGTGAGAGACTCCCTCGCCGAAAGTCCAAGGTTCCTGCTTAAG
+ TTAATCTGAGCAGGGTTAGCCGGCCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAACCACGTAATATTGTGGGCGTGACGGATCGCGTGGTTGTAGGTA
+ TTGATCTCAGCGGTTCCAGGAAATACACCGTACCAAACCGACACTGGTGGACGGTAGAGAATACCAAGGCGTTGAGAGAACTGCGTTGAAGGAACTCGGC
+ AAAATGCACGCGTAACTTCGGAAGAAGCGTGACCTCCAGGGTGGCACAGACCGGGGGAGGACTGTTTACCAAAAACACAGGCTCTGCGAAGTCGCAAGAC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGAGGTCAAGCTTGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCGCTGTCTCCAACGCAGACTCAGTGAAATTGAATTCCC
+ CGTGAAGATCGGGGTTCCTGCGGTTAGACGGAAGACCCCGGCACCTTTACTATAGCTTTACACTGGCATTCGTGACGACATGTGTAGGATAGGTGGTAGA
+ CTTTGAAGCAGGGGCGCCAGCCTTTGTGGAGTCCCCTGAAATACCACCCTTGTTTTTATGATGTCTAACTGCGATTCCAGGACCGTGTATGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCGCGATGGTAGGCTCAGAACGGTCGGAAATCGTTCGTCGAGTGCAATGGCATAAGCCTGCC
+ TGACTGCAAGACTGACAGTGAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATGACCCCCAAGAGTCCATATCGACGGGGTGTTTGGCACCTCGATGTCGACTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGTGAGTTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGAATTTGACAGGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACGTATTCTGGTGGACCTGTTGTGGCGCCAGCCCAAGCAGGGTAGCTATATCGGCGGGATAACCGCTGAAGCATCTAAGCGGA
+ AACCCCCTAAAAGAGTATTCCCAGAGCCGTGGAAGACCACACGTGATGGCCGG
+
+Thermus ATGGTAAGGCCCACGGTGGATGCCTCGGCACCCAGCCGATGAAGGACGTGGCTACTGCGATAAGCCAGGGGGAGCCGGTAGGGGCGTGATCCCTGGATGT
+ CCGAATGCCGTTTTGGGGGACCTGGGGACTGAAACATCTCAGTACCCAGGGAGAGGAAAGAGAATCGACTCCCTGAGTAGCGGCGAGCGAAAGGGGACCA
+ GCCTGGGCCTAGCCGAAGCTGTTGGGAACAGCGCCGAGAGGTGAAGCCCCGTAGCAAGCCCGAGTCCCCGTGGTTCGTGGAGCCATGGGGGAATCTGGGC
+ GGACCACGGCCTAAGGCTAAGTACTCCGGGTGACCGATAGCGCACAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGGCTGAAACCGTGGGCTT
+ ACAACAGTCACGGCCCAGGGTTGTGGGTGCCTATTGAAGCATGAGCCGGCGACTCACGGTCGTGGGCGGCTTAAGTTGGGAGGCGTAGGGACCGGTCCGA
+ ACAGGGCGAAGTCCGCGGCCGTGGACCCAAACCGGCGAGCTAGCCCTGGCCAGGTGAAGCTGGGTGAGACCCAGTGGAGGCCCGAAGGTGGGGGATGCAA
+ ACCCCCGGATGAGTGGGCTAGGAGTGAAAAGCTAACCGAGCCCGAGATAGCTGGTCTCCCCGAAATGACTTTAGGGTCAGCCTCAGGGACTGGGGCTGTA
+ GAGCACTGATAGGGCTAGGGCCCGCCAAACCCTGTCAAACTCCGAAGGGTCCTGCCTGGGAGTGAGGGGCGAGCGATAACGTCCGCGTCCGAGGCGGGAA
+ CAACCGAGACCGCCAGCTAAGCCCCCAAGCGGGCTAAGTGGAAAGGATGTGCGCCGCGAAGACAGCCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTGGCGCCCGAAAATGACGGCTAAGCCCAGCGCCGAAGCTGCGGGTATGCGGTAGGGGAGCGTTCCCGACCGATAAGGCG
+ ACCCGCGAGGCGGCTGGAGGTAAGGGAAGTGCGAATGCGGCATGAGTAACGAAAGAGGGTGAGAATCCCTCTCGCCGTAAGCCCAAGGTTCCTACGCAAG
+ GTCGTCAGCGTAGGGTTAGGCGGGACCTAAGGTGAAGCCGAACGTAGCCGAAGGGCAGCCGGTAATATTCGGCCCGGGACGCTCAGGCTAGGGGGCGGAA
+ TGGCCCGCCCCCGAGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTGGGCGGTGAAGAGCACTCAGGCGGCGGGAGAACCCTCGCCAAGGAACTCTGC
+ AAGTTGGCCCCGTAACTTCGGGAGAAGGGGTGCTCCATGGGCCGCAGTGAACGGCTCGGGACTGTTTACCAAAAACACAGCCTCTGCGAACTCGTAAGAG
+ AGGTATAGGGAGCGACGCTTGCCCGGTGCCGGAAGGTCAAGGGGAGGGGTCAAGCCCGAACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAAAAGCGTAACGACCGGAGCGCTGTCTCGGCGAGGGACCCGGTGAAATTGAACTGGC
+ CGTGAAGATCGGCCTACCCGTGGCAGGACGAAAGACCCCGGGAGCTTTACTGCAGCCTGGTGTTGGCTCTTGGTCGCGCCTGCGTAGGATAGGTGGGAGC
+ CTGTGAACCCCCGCCTCCGGGTGGGGGGGAGGCCCGTGAAATACCACCCTGGCGCGGCTGGGGCCTAACCCTCATGGGGGGACAGCGCTTGGCGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCCCAAAGGTCCCCTCAGGCGGGACGGAAATCCGCCGGAGAGCGCAAGGGTAGAAGGGGGCC
+ TGACTGCGAGGCCTGCAGCGAGCAGGGGCGAAAGGGGCCTAGTGAACCGGTGGTCCCGGTGGAAGGGCCATCGATCAACGGATAAAGTTACCCCGGGATA
+ ACAGGCTGATCTCCCCCGAGCGTCCACAGCGGCGGGGAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGAAGAAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCTCTATCCGCCACGGGCGCAGGAGGTTGAGGGGGCTCTTCCTAGTA
+ CGAGAGGACCGGAAGGGACGCACTCTGGTTTCCCAGCTGTCCCTCCAGGGCAAGCTGGGTAGCCATGTCGGAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCCCCCAAGAGAGGCCTCCCAGGACCCGGGAAGACCACCGGTGATGGCCGG
+
+Streptomyces at griseus TTTTTAAGGCGCACGGTGGATGCCTTGGCACCAAACCGATGAAGGACGTGGGAGCCACGATAGTCCCCGGGGAGCTGCAACAAGCTTGATCCGGGGGTTT
+ CCGAATGCCCACATGGGGGACGAGGGGAGTGAAACATCTCAGTACCCTCGGAAGAGAAAACAACGTGATTCCGGGAGTAGTGGCGAGCGAAACTGGATGA
+ GGCCGGATGTAGGCGAAGACATGCGAAAGTCCGGCTAGAGGTAAACCCCCGTACTAACCCCAAGTGCACGGGGCCCGAGAAATCCCGTGTGAATCTGGCG
+ GGACCACCCGCTAAGCCTAAATATTCCTGGTGACCGATAGCGGATAGTACCGTGAGGAATGGTGAAAAGTGCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAACCGTGGGAGCGTTTCGTGACTGGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGGGTGTGTAGCGGGTTAACTGGGAAGCCGTAGCGAGCGGTCCGA
+ ACAGGGCGGAGTTGCACGCTCTAGACCCAAGCGAGTGATCTAGCCATGGGCAGTTGAAGCGGAGTAAGACTTCGTGGAGGACCGAACACCAGGGTTGAAA
+ ACCTGGGGATGACTGTGTTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCGTGTTCTGCCGAGGTA
+ GAGCACTGGATAGGCGAGGCCTCGGTAACCTTAGCCAAACTCCGAATGCCGGAGCACGGCAGTGAGACGTGGGGGATAAGCTCCATGGTCGAGAGGGAAA
+ CAGCCCAGAGCATCGACTAAGCCCCTAAGGACGCTAAGTGGAAAGGATGTGAGTCGCAGAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTCCCGACAATGTCGGCTAAGCGTACCGCCGAAGTCGTGTCAAATGGGTAGGGGAGCGTCGTGTGCGGGTAAGCAG
+ CCGCGGAACGGTTGTGGACGGTTCACGAGTGAGAATGAGGCATGAGTAGCGAACACACGTGAGAAACGTGTGCGCCGATTGACTAAGGTTCCTGGGTCAG
+ CTGATCTGCCCAGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACCGGTGATATTCGGTACGTGACGCAGAAGGTAGTCCACCCGG
+ TGGCGGGGGATTCTGTCGAGAAAAGCCCCGTACCAAACCGACTCAGGTGGTCGGTAGAGAATACCGAGGCGTCGGGTGAACTATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCATTTGTGCCGCAGAGACCGCGAGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGCCGTAAGGC
+ ATGTATACGAACTGACGCCTGCCCGGTGCTGGAACGTTAAGGGGACCGGTTCGGTGAGAACTTAAGCGCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCTCGACTGTCTCAACCATAGGCCCGGTGAAATTGCACTACG
+ AGTAAAGATCTCGTTTCGCGCAGCAGGACGGAAGACCCCGGGACCTTTACTATAGTTTGATATTGGTGTTCGGTTCGGCTTGTGTAGGATAGGTGGGAGA
+ CTTTGAAGCGGCCACGCCAGTGGTTGTGGAGTCTCGTGAAATACCACTCTGGTCGTGCTGATGTCTAACCTGGATTCAGGGACAGTGTCTGATGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGTAAGTGCACAAGGGAGCT
+ TGACTGTGAGACCGACGGTGAGCAGGGACGAAAGGGGACTAGTGATCCGGCAGTGGCTGTGGAAGCGCTGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCCGCTGTGCGCGTAGGAATTTGAGAAGGCTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTGTGCCAGTTGTCCTGCCAAGGCAGGCTGGTTGGCTACGTCGGAAGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTCTTGAGAGAGTATTCCCAGGCTCCCAGTAGACGACGGGTGATGGCCAG
+
+Alcaligenes CGAATAAGGCATATGATGGATGCCTTGGCGATCAGGCGATGAAGGACGCGGTAGCTGCGAAAAGCTACGGGGAGCTGCAAAAAGCTTGATCTGTAGATGT
+ CCGAATGTCCACATGAGCGACCGAGTGACTGAACCATCTCAGTAACTCGGGAAAAGAAATCAACGAGATTCCGGAAGTAGTGGCGAGCGAAACCGGACCA
+ GCCTATGAATAGTCGAATGGAATGGAAATCCAGCCTAGCGGTGAAGCCCTGTAGCAATAACAAGTGGGCGGGACACGTGAAATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGATCGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGTCTGAAATCGTATGCAT
+ ACAACAGTAGGAGCACCGTGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTACATTCAGTGGCAGCTTAACAAGGGAGGCGTAGCGAGCGGTCCGA
+ ATAGGGCGCAGTCGCTGGGTGTAGACCCAAACCGGCGATCTATCCATGGCCAGTTGAAGGCACGTAACACGTGCTGGAGGACCGAACACTAATGTTGAAA
+ AATTAGGGATGAGTGTGATCGGAGTGAAAGGCTAAACAAGCCTGAGATAGCTGGTCTCTCCGAAAACTATTTAGGTAGTGCCTCGTATACTGCCGGGGTA
+ GAGCACTGTTATGGCTAGGGTCGACTAACCCATGGCAAACTCCGAATACCGGTATACGGGAGACAGAGACGGGTGCTAACGTCCGGACTCAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCTAACATGGCTAAGTGGAAACGAAGTGGAAGGCATAGACAGTCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGATCGAGTCGTCCCGGAAGATGTCGGCTAAGCCATAGACCGAAGCTGCGGATATATGGTAGGAGAGCGTTCCGTACCTGTAAGGTG
+ TTCCGTGAGAATGCTGGAGGTATCGGAAGTGAGAATGTGACATGAGTAGCGAAAGGGGGTGAAAAGCCCCCTCGCCGTAAGTCCAAGGTTCCTGCGCAAG
+ TTCATCGGCGCAGGGTGAGTCGGCCCCTAAGGCGAGGCAGAACGTAGCTGATGGGAAGCGGGTAATATTCCGCACGGGACGGATTGCAGATGTTACGGGT
+ TGGCCCGAACTCGTTCCAAGAAAAGCACCGTACCAAACCGACACAGGTGGACGGGAGAATATTCCAAGGCGTTGAGAGAACTCAGGAGAAGGAACTCGGC
+ AAATTAATACCGTAACTTCGGGAGAAGGTATGCCTCGCAAGCCGCAGTGAATGGTGGTGGACTGTTTACTAAAAACACAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAAGTGATGGGGTCAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCTGAGACTCAGCGAAGTTGACATGGT
+ TGTGATGATCAATCTCCCCGCGGCTAGACGGAAGACCCCAGAACCTTTACTGTAGCTTTGCATTGGATTGTGAACCGGCCTGTGTAGGATAGGTGGGAGA
+ CGTTGAAGCGTGGTCGCCAGATCGCGTGGAGTCTCCTGAAATACCACCCTGGTCTGTTTGGGTTCTAACCTAGATTCGGGGACCGTGCATGGTGGGCAGT
+ TTGACTGGGGCGGTCTCCTCCTAAAGTGTAACGGAGGAGTTCGAAGGTACGCTAGAGACGGTCGGAAATCGTCTTGATAGTGCAATGGCATAAGCGTGCT
+ TGACTGTGAGACTGACAGTGAACAGGTACGAAAGGGACATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGTAGCCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGTGAGCTGGGTTTAAAACGTGTGAGACAGTTTGGTCCCTATCTGCCGTGGGCGTTGGATATTGACGGAGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGTACACTGGTGTATCGGTTGTCATGCCAATGCATGCCGAGTAGCTACGTCGGAGAGATAACCGCTGAAGCATCTAAGCGGA
+ AACTCTCTAAGATAGATATCCCAGGGTCGTCCGAGACCAGACGTGATGGCTGG
+
+Mycoplasma at hyopneumo TAAATAAGGTATTTGGTGGATGCCTTGGGTCTGAGTCGATGAAGGACGTGATTACTGCGATAAGCTTCGTGGAGTTGGAAAAAACTAGATACGGAGATTT
+ CCGAATGCGCTCATAGAGAACGTTGCGATTGAAACATCTTAGTAGCAACGGAAAAGAAAATAAAATGATTCCCAAAGTAGTGGCGAGCGAAATGGGAAGA
+ GCCCGGAAATAGTAGAAAAAGTTGGAAACTTTGACTAGAGGTGAATCCCTGTAATAATCCTGAGTGGGCGGGGCACGTGGAACCCTGTCTGAATTTGCCA
+ GGACCACCTGGTAAGGCTAAATACTATCAGACACCGATAGTGAATAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGTCTGAAACCATTTACTT
+ ACAATAGTCAAAGCACAGTGTGATGGGTACATCTTGCAGTATGGTCCGGCGAGTTATGTTAACAAGCAGGTTAAGATGGGAGCCGTAGGGACCGGTCTAA
+ ATAGGGCGAAGTTTGTTGACATAGACCCAAACCGGTGATCTATCCATGAGCAAATGAAACTTTGTAACACAAAGTGGAGGTTCGAAGTAGTACGCTAAAA
+ AGTGCCGGATGACTGTGATAGCGGTGAAATTCCAATCGAACCTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCGTATAGTAATAATGGGGTA
+ GAGCACTGAATGTGGAAGCGGCTCTGAACTATAATCAAACTCCGAATACCATCTCTATGCAGTCGGAAGTGGGTGATAACGTCCGCGCTCGCGAGGGAAA
+ CAACCCAGATCGTCAGCTAAGTCCCAAAATATGTTAAGTGAAAAGGTTGTAAATTTCTTAAACAACTAGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATTGCTCACTAGTCAAGAGATCTCCAATAATGTCGGCTAAACATAATACCGAAGCTGCGGGTTTACGTTAGGAGAGCGTTTTAATTCGCTAAGCTA
+ GAGGGTGACACTAGTGGAGAAATTAAAAGTGAGAATGCGGAATGAGTAACGATTCGAAGTGAGAATCTTCGACGCCTATTGGGGAAGGTTCCTGGGCAAG
+ GTCGTCCACCCAGGGTTAGTCAGGGCCTAAGGAGAGGCTGAACGTATCCGATGGATAATCGGTAATATTCGATACATTACGAAAAAGATAGTTTTCCACC
+ TGGGTGGAAATTTTTCCAAGAAAAGTCCTGTACCGAACGGACACACGTCCCCAGATGAGTATTCTAAGGTGGCGAGAAAACCAATGTTAAGGAACTCTGC
+ AAAATTATCCCGTACGTTCGCAAGAAGGGATGCCCTCTAGGCCTCAGTAAAAAGGGGGGAACTGTTTATCAAAAACACAGCCTCTGCAAAGGTGTAAACC
+ AAGTATAGAGGGTGAAGCCTGCCCAGTGCCCGAAGGTTAAGCGGAGATGTATTGATTCAAGTGAAGCCCGGGTGAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCAACTAATTATTGACCTGCACGAAAGGCGCAATGATCTCCCTACTGTCTCAACATTGGACTCGGTGAAATTATGGTACC
+ AGTGAAAACCTGGTTACCCGCATCAAGACGAAAGACCCCGGGAGCTTTACTATAACTTCGTATTGAGAATTGGTTTATTATGTGTAGGATAGGTGGGAGA
+ TGTCGATCCAAGGGCGCTAGTCCTTGTGGAGTCAACTGAAATACCACCCTTAATAAATTGTTTTCTAACCTGCAAAGAGAGACAGTGCGTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGTGTTCAAAGCTACACTCAATATGGTCGGAAACCATATGCAGAGCATAAAGGTAAAAGTGTGGT
+ TGACTGCAAGACCTACAGTGAGCAGGTGCGAAAGGGACTTAGTGATCCGGCGGTTCATGTGGAATGGCCGTCGCTCAACGGATAAAGCTACCCCGGGATA
+ ACAGGCTAATCTTCCCCAAGAGATCACATCGACGGGAAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGAGCTGAAGTCGGTTCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGTGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGATGTGGGCGTTGGAATTTGATGAGACTGCTCTTAGTA
+ CGAGAGGACCGGAGTGGACGTACGCTGGTGTTCCAGTTGTCTTGCCAAAGCAAGCTGGGTAGCTAAGTCGGAAAGATAACCGCTGAAACATCTAAGCGGA
+ AGCTTCTCAAGAGAGTATTCCTAAATTCCTTATAGACTATAGGTGATGGTTAG
+
+Helicobacter at pilori CTTTTAAGGCAGATGGCGGATGCCTTGCCAAAGAGGCGATGAAGGACGTACTAGCTGCGATAAGCTATGCGGAGCTGTCAAGAGCTTGATGCGTAGATGT
+ CCGAATGCTCTAATAGGCGACCTAGTGAGTGAAACATCTCAGTAACTAGGGAAAAGAAATCAACGAGATTCCCTAAGTAGTGGCGAGCGAACGGGGAAAA
+ GGGCGGATTTAGCAGAGTTACCTGGAAAGTAAGCCTAGAAGTGAAGCCTTGTAGCCAACCAGAGTGGCCAGGACACGAGAAATCCAGGTTGAAGCCGGGG
+ AGACCACTCTCCAACCCTAAATACTATCTTTGAGCGATAGCGAAAAGTACCGTGAGGAAAGGTGAAAAGAGCAGAGTGAAAAGACTGAAACCATCTGCTT
+ ACAACATTCAGAGCCCTGGGTGATGGCTGCCTTTTGCATAATGATCCTGCGAGTTGTGGTATCTGGCAGGTTAAGAAGGAAGCCGTAGCGAGCGGTCTTA
+ ATAGGGCGAAGTCAGATGCTGCAGACCCAAGCTAGTGATCTATCCATGGCCAGTTGAAACGCGTTAATAGCGCGTGGAGGACTGAACGTACCCATTGAAA
+ CGGGTGGGATGAGTGTGATAGGGGTGAAAGGCCAAACAAACTTGTGATAGCTGGTCTCTTCGAAATATATTTAGGTATAGCCTCAAGAATAAAAGGGGTA
+ GAGCCCTGATTGGGCTAGCTGCCCGGAAACCCTATCAAACTTCGAATACCTTTCCTTGGGAGTCAGGCGTGGGTGATAAAATCAATCGTCAAAAGGGGAA
+ CAACCCAGACTACCAAATAAGTCCCTAAGTTATTCGAGTGGAAAAGATGTTGGCTACTCAAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGTGGTCACTGAAAATATCGGCTAAGATAGACACCGAATTTGTAGATAAGTGGTAGAAGAGCGTTCATACGCGTTAAGGTA
+ TACCGTAAGAGTGCTGGAGCGGTATGAAGTGAGCATGAGGAATGAGTAACGAAGATATATGAGAATTGTATCCGCCGTAAATCTAAGGTTCCTACGCGAG
+ GTCGTCATCGTAGGGTTAGTCGGGTCCTAAGCCGAGTCCGAAGGTAGGTGATGGCAAATTGGTAATATTCAATACGGGACGCATGGGTTAAGCGACTAGA
+ TGGCTAGCGCTCGTGCCAAGAAAAGTTCCGTACCAAACCGACACAGGTAGATAGATGAGTATTCTAAGGCGGTGAAAGAACTCTGGTTAAGGAACTCTGC
+ AAACTAGCACCGTAAGTTCGCGATAAGGTGTGCCACCGTTGTCTCAGCAAAGGTCCCCCGACTGTTTACCAAAAACACAGCCTTTGCCAACTCGTAAGAG
+ AAGTATAAGGTGTGACGCCTGCCCGGTGCTCGAAGGTTAAGAGGATGCGTCAAGGTTGAATTGAAGCCCGAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGTTAAATACCGACCTGCATGAATGGCGTAACGAGATGGGAGCTGTCTCAACCAGAGATTCAGTGAAATTGTAGTGGA
+ GGTGAAAATCCTCCTACCCGCGGCAAGACGGAAGACCCCGGGACCTTTACTACAACTTAGCACTGCTAATGGGAATATCATGCGCAGGATAGGTGGGAGG
+ CTTTGAAGTAAGGGCTTTGGCTCTTATGGAGCCTCCTGAGATACCACCCTTGATGTTTCTTTAGCTAACTGGCATGGCAGGACAATGCTTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAAGTAACGGAGGCTTGCAAAGGTTGGCTCATTGCGGTTGGAAATCGCAAGTTGAGTGTAATGGCACAAGCCAGCC
+ TGACTGTAAGACATACAGTAAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTTCTGGTGGAAGGGCCATCGCTCAAAGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGTAGGAAATTGAGGAGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACGTGTACTGGTGCACCAGTTGTTCTGCCAAGACACGCTGGGTAGCTACACCGGTGTGATAACTGCTGAAACATCTAAGCAGA
+ AGCCACTCAAGAGAACTTTCCCAGCTCGCACAAAGACTATTGCTGATGGGTAG
+
+Bordetella at bronchise CGACTAAGGCATATGGTGGATGCCTTGGCGATCAGGCGATGAAGGACGTAGTAGCTGCGAAAAGCTGCGGGGAGCTGCAAAAAGCATGATCCGCAGATAT
+ CCGAATGTCCACATGAGCGACCGGGTGACTGAAACATCTCAGTAGCTCGGGAAAAGAAATCAACGAGATTCCGAAAGTAGTGGCGAGCGAAATCGGAAGA
+ GCCTACGCATAGTCGAACGGAATGGAAATCCGGCCTAGCGGTGAAGCCCTGTAACAATGAGAAGTGGGCGGGACACGTGAAATCCTGTCTGAAGATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGATCGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGTCTGAAACCGTATGCAT
+ ACAACAGTCGGAGCCTTGGGTGACGGGTACCTTTTGTATAATGGGTCAGCGACTTACATTCAGTGGCAGCTTAACAAGGAAGGCGTCAGAAGCAGTCCGA
+ ATAGGGCGCAGTCGCTGGGTGTAGACCCAAACCGATGATCTACCCATGGCCAGTTGAAGGCACGTAACACGTGCTGGAGGACCGAACACTAGTGTTGAAA
+ AACTAGGGATGAGTGTGATAGGGGTGAAAGGCTAAACAAATCTGAAATAGCTGGTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTACTGCAGGGGTA
+ GAGCACTGTTATGGCTAGGGTTGACTAAACCATGGCAAACTCCGAATACCTGTACTTGGGAGACAGACACGGGTGCTAACGTCCGGACTCAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCGAATATCGCTAAGTGGAAACGAAGTGGAAGGCATAGACAGTCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGATCGAGTCGTCCCGGAAGATGTCGGCTAAGCGATAAACCGAAGCTGCGGGTTTACGGTAGGAGAGCGTTCTGTACCTGCAAGGTG
+ GCTTGTAAGGCTGCTGGAGGTATCAGAAGTGCGAATGTGACATGAGTAGCCAAAGGGGGTGAAAAGCCCCCTCGCCGTAAGTCCAAGGTTCCTGCGCAAG
+ TTCATCGGCGCAGGGTGAGTCGGCCCCTAAGGCGAGGCAGAACGTAGCTGATGGGAAGCTGGTAATATTCAGCACGGGACGGATCGCGGAGGTCACAGGT
+ TGGCCTGGATTTGTTCCAAGAAAAGCACCGTACCAAACCGACACAGGTGGGAGGGAGAATATTCCAAGGCGTTGAGAGAACTCAGGAGAAGGAACTCGGC
+ AAATTGATACCGTAACTTCGGGAGAAGGTATACCCTGCAGGTCGCAGAGAATGGTGGTGGACTGTTTATTAAAAACACAGCCTCTGCAAAGACGAAAGTC
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAAGTGATGGGGTCAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCTGAGACTCAGCGAAGTTGAAGTGTT
+ TGTGATGATCAATCTACCCGCGGCTAGACGGAAGACCCCAGAACCTTTACTGTAGCTTTGCATTGGACTGTGAACCGGCCTGTGTAGGATAGGTGGGAGG
+ CGCAGAACTCGAGTCGCCAGATTCGAGGGAGCCTCCTGAAATACCACCCTGGTTTGTTTGGGTTCTAACCTTGATTCGGGGACAGTGCATGGTAGGCAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGTTCGAAGGTACGCTAGGTACGGTCGGAAATCGTGCTGATAGTGCAATGGCATAAGCGTGCT
+ TGACTGTGAGACTGACAGTGAACAGGTGCGAACGGGACATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGAAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGTGAGCTGGGTTTAGAACGTGTGAGACAGTTTGGTCCCTATCTGCCGTGGGCGCTGGAAATTGACAGGACTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGTACTCTGGTGTACCGGTTGTCATGCCAATGCATGCCGGGTAGCTAAGTCGGAGAGATAACCGCTGAAGCATCTAAGCGGA
+ AACTCTCTAAGATAGGTATCCCAGGGTCGTTCGAGACCAGACGTGATGGTCGG
+
+Bacillus at stearotherm CTAGAAAGGCGCACGGTGGATGCCTTGGCACTAAGCCGATGAAGGACGGGGCAACGCCGAAACGCTCCGGGGAGCTGTAAGAAGCGTGATCCGGAGATGT
+ CCGAATGTCCCCATGAGCAACCCGGGGACTGAAACATCTTAGTACCCGGGGAGAAGAAAGCAAAGCGATTCCCTGAGTAGCGGCGAGCGAAACGGGAACA
+ GCCCGGAGGTAGACGAACGGTCTGGAACGCCGGCCGAGAGGTGAAGCCCTGTATCAACCCTGAGTCGGCGGGACACGGGAAATCCCGTCGGAAGCAGGGA
+ GGACCATCTCCCAAGGCTAAATACTCCTAGTGACCGATAGTGCACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAATAGTCAGAGCGCCGCGTGATGGGTGCCTTTTGTAGAATGAACCGGCGAGTGACGATGGCGTGCGGGTTAAGAAGGGAGCCGCAGCGAGCGGTCTGA
+ ACAGGGCGAAGTACGTCGTCGTCGACCCAAACCGGTGATCTACCCATGTCCAGGTGAAGGCCGGTAACACCGGCTGGAGGCCCGAACACGCACGTTGAAA
+ AGTGCGGGATGAGTGTGGTAGGGGTGAAATGCCAATCGAACTTGAGATAGCTGGTCTCCCCGAAATAGCTTTAGGGCTAGCCTCGGGAGATGTTGAGGTA
+ GAGCACTGATTGGGCTAGGCCCTGGTAAACCCAGTCAAACTCCGAATGCCAATACCCGGGAGTCAGACGCGAGTGATAAGATCCGTGGTCGAGAGGGAAA
+ CAGCCCAGATCGCCAGCTAAGCCCCAAAGGACGTTCAGTGGAAAGGATGTGAGTTGCAAAGACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTGACTCCCGAAAATGTCGGCTAAACGTGCCGCCGAAGCTGCGGGATTTCGGTAGGGGAGCGTTCTAAGGCGTTAAGCCA
+ GACCGGAAGACTGGTGGAGCGCTTAGAAGTGAGAATGCGGTATGAGTAGCGAACAGAGGTGAGAATCCTCTGCGCCGAAAGCCTAAGGTTCCTGAGGAAG
+ TTCGTCCGCTCAGGGTTAGTCGGGACCTAAGCCGAGGCCGAACGTAGGTGATGGACAACAGGTGAGATTCTGTACGGGACGCAGAGGATAGGGCGCAGGC
+ TGGCCTGCCCCCCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGGCAGGAGAGAATCCTAAGGCGGCGGGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCGAAAGGCCGCAGACAAAGGCCCAAGACTGTTTATCAAAAACACAGGCTCTGCGAAGTCGTAAGGC
+ ACGTATAGGGGCTGACACCTGCCCGGTGCTGGAAGGTTAAGGGGAGCGCTGAAGTGCGAACCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGTGTAACGACTTGGGCGCTGTCTCAACGAGAGACCCGGTGAAATTATACTACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCGGGAGCTTTACTGCAGCCTGATATGGAATTTTGGTGTCGCTTGTACAGGATAGGTGGGAGC
+ CTGGGAAGCCGGAGCGCCAGCTTCGGTGGAGGCGCGTGGGATACCACCCTGGCGATATTGAATTCTAACCCGCAGTGGGAGACAGTGTCAGGCGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAAGGTAACGGAGGCGCCCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGGAGAGTGCAAAGGCACAAGGGAGCT
+ TGACTGCGAGACGGACAGTGAGCAGGGACGAAAGGGGCTTAGTGATCCGGTGGTTCCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCCGGGATA
+ ACAGGCTGATCTCCCCCAAGAGTCCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACGCACGCTGGTGTACCAGTTGTCCCGCCAGGGCACGCTGGGTAGCTATGTCGGCGGGATAAGCGCTGAAACATCTAAGCGTA
+ AGCCCCCTAAGAGAGATTTCCCAGATCCCTCGAAGATGACAGGTGATGGTCCG
+
+Streptomyces at rimosus TTTTTAAGGCGCACGGTGGATGCCTTGGCACCAAACCCATGAAGGACGTGGGAGCCGCGATAGGCCCCGGGGAGCTGCAACGAGCTTGATCCGGGGGTGT
+ CCGAATGCCCTCATGGGGGACGCGGGGAGTGAAACATCTCAGTACCCGCGGAAGAGAAAACAACGTGATTCCGGGAGTAGTGGTGAGCGAAACCGGATGA
+ GGCCGGATGTAGGCGAAGACATGCGAAAGTCCGGCTAGAGGTAAACCCCCGTACTAACCCCAAGTGCACGGGGCCCGTGAAATCCCGTGTGAATCTGGCG
+ GGACCACCCGTTAAGCCTAAATATTCCTGGTGACCGATAGCGGATAGTACCGTGAGGAATGGTGAAAAGTGCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAACCGTGGGAGCGTTTCGTGACTGGTGCCTTTTGAAGAATGAGCCTGCGAGTTTGGGTATGTTGCGGGTTAACTGGGAAGCCGTAGCGAGCGGTCCGA
+ AGAGGGCGTAGTAGCGTGCCCAAGACCCAAGCGAGTGATCTAGCCATGGGCAGTTGAAGCGGAGTAAGACTTCGTGGAGGACCGAACACCAGGGTTGAAA
+ ACCTGGGGATGACTGTGTTAAGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCGTGTTCTGCCGAGGTA
+ GAGCACTGGATAGGCGAGGCCTCGGTAACCTTAGCCAAACTCCGAATGCCGGAGCGCGGCAGTGAGACGTGGGGGATAAGCTCCATGGTCGAGAGGGAAA
+ CAGCCCAGAGCATCGACTAAGCCCCTAAGGGTGCTAGGTGGAAAGGATGTGAGTCGCAGAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTCCCGACAATGTCGGCTAAGCACACCGCCGAAGTCATGTCAAATGGGTAGGGGAGCGTCGTGTGCGGGTAAGCAG
+ CGCCGGAAGTGTTGTGGACGGTTCACGAGTGAGAATGAGGCATGAGTAGCGAACACACGTGGGAAACGTGTGCGCCGATTGACTAAGGTTCCTGGGTCAG
+ CTGATCTGCCCAGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACCGGTGATATTCGGTACGTGACGCAGAAGGTAGTCCACCCGG
+ TGGCGGGGGATTCTGTCGAGAAAAGCCCCGTACCAAACCGACTCAGGTGGTCGGTAGAGAATACCGAGGCGTCGGGTGAACTATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCACTTGTGCCGCAGAGACCGCGAGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGCCGTAAGGC
+ TTGTATACGGACTGACGCCTGCCCGGTGCTGGAACGTTAAGGGGACCGGTTCGGTGAGAACTTAAGCGCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCTCGACTGTCTCAACCATAGGCCCGGTGAAATTGCACTACG
+ AGTAAAGATCTCGTTTCGCGCAGCAGGACGGAAGACCCCGGGACCTTTACTATAGCTTGATATTGGTGTTTGGTTCGGCTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAGCCGTGACGCCAGTCATGGTGGAGTCCTGTGAAATACCACTCTGGTCGTGCTGATGTCTAACCTGGATTCAGGGACAGTGTCTGGTGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAGGGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGTAAGTGCACAAGGGAGCT
+ TGACTGTGAGACTGACGGTGAGCAGGTACGAAAGGGGACTAGTGATCCGGCGGTGGCTGTGGAAGCGCCGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCCGCTGTGCGCGTAGGAGTTTGAGAAGGCTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTGTGCCAGTTGTTCTGCCAAGGCAGGCTGGTTGGCTACGTCGGAAGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTCTTGAGAGAGGGCTCCCAGGCTCCCAGTAGACGACGGGTGATGGCCAG
+
+Staphylococcus at pisci TTATTAAGGCGCACGGTGGATGCCTTGGCACTAAGCTGATGAAGGACGTTACTACGACGATATGCTTTGGGTAGCTGTAAGAAGCGTGATCCAGAGATTT
+ CCGAATGTCGACATGAGCAACGCGGAGACTGAAACATCTTAGTACCCGCGGAAGAGAAAGAAAATCGATTCCCTGAGTAGCGGCGAGCGAAACGGGAAGA
+ GCCCGGAATTAGACGAATGTACTGGAAATCGAACCGAGAGGTAAAGTCCTGTATCAAGCCTGAGTCGACGGAGCACGTGAAATTCCGTCGGAATCCGGGA
+ GGACCATCTTCCAAGGCTAAATACTCCTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGTCCGGAGTGAAAAGATTGAAACCGTGTGCTT
+ ACAATAGTCAGAGCCCAGGGTGATGGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGATCTGATGCAGGTTAAGCGGGGAGCCGCAGCGAGCGGTCTGA
+ ACAGGGCGGAGTATTTGGTCGTAGACCCAAACCGGTGATCTACCCTTGGTCAGTTGAAGTTCAGTAACACTGAATGGAGGACCGAAGACTTACGTTGAAA
+ AGTGACGGATGAATGAGGTAGCGGAGAAATTCCAATCGAACCTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCCTCAAGGATTGTTGAGGTA
+ GAGCACTGTTTGGACGAGGCCTTGGTAAATTCAGACAAACTCCGAATGCCAATTCTTGGGAGTCAGAAGTGGGTGATAAGGTCCATGTTCGAAAGGGAAA
+ CAGCCCAGACCACCAGCTAAGTCCCAAAAAATGTTAAGTGGAAAGGATGTGTATTGCCCAGACAACTAGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTAGTCGAGTGACACCCGAAAATGTCGGCTAAACATATTACCGAAGCTGTGGACTTGTGGTAGGAGAGCGTTCTAAGGCGTCAAGCAT
+ GATCGCAAGACATGTGGAGCGCTTAGAAGTGAGAATGCGGTGTGAGTAGCGAAGATGGGTGAGAATCCCATCCACCGATTGACTAAGGTTCCAGAGGAAG
+ CTCGTCCGCTCTGGGTTAGTCGGGTCCTAAGCCGAGGCCGAACGTAGGCGATGGATAACAGGTGATATTCTGTACGGGACACAGAGGATAGGCGACGTGT
+ TGGCACGCGTTCCTGTCGAGAAAAGCCCCGTACCAAACCGACACAGGTAGTCAGATGAGAATTCTAAGGTGGCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCAAGGCCGCAGTGAATGGCCCAAGACTGTTTATCAAAAACACAGGCTCTGCTAAACCGTAAGGT
+ ATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGGTTCTGTACGAATCGAAGCCCCAGTAAACGGCGGCCGTAACTCTAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATTTGGGCACTGTCTCAACGAGAGACTCGGTGAAATCATAGTACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCGGGAGCTTTACTGTAGCCTGATATTGAAATTCGGCACAGCTTGTACAGGATAGGTAGGAGC
+ CTTGGAAACGTGAGCGCCAGCTTACGTGGAGGCTTGTGGGATACTACCCTAGCTGTGTTGATTTCTAACCCGCATCGGGAGACAGTGTCAGGCGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGTGTAACGGAGGCGCTCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCATAGAGTGTAAAGGCATAAGGGAGCT
+ TGACTGCGAGACCTACAGTGAGCAGGGTCGAAAGGGACTTAGTGATCCGGTGGTTCCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCCGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGTGGGCGCAGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACATACTCTGGTGTACCAGTTGTCGTGCCAACGCACGCTGGGTAGCTATGTTGGCGGGATAAGTGCTGAAACATCTAAGCATA
+ AGCCCCCTAAGAGAGATTTCCCAGATCCCTCAAAGATGATAGGTAATGGTTCG
+
+Microbispora TTACTAAGGCACACGGTGGATGCCTTGGCACCAAGCCGATGAAGGACGTGGGAGCTGCGATAAGCCTCGGGGAGCCGCTACAGGCGTGATCCGGGGATTT
+ CCGAATGCCGGCATGGGGGACGCGGGGAGTGAAACATCTCAGTACCCGCGGAAGAGAAAGCAATGCGATTCCCTGAGTAGTGGTGAGCGAAAGGGGAAGA
+ GGCTGGAGATAGCCGAACGCTCTGGAATGGCGGCCTAGACGTGAAGCCGGGTAGCAATCCCGAGTGCACGGGGCCCGAGGAATCCTGTGCGAATCTGCCA
+ GGACCACCTGGTAAGCCTAAATACTCCTGGTGACCGATAGTGGAGAGTACCGTGAGGAAAGGTGAAAAGCCCGGTGTGAAAAGACTGAAACCGTGTGCCT
+ ACAACCGTGGGAGCTTTATGTGACCGGTGCCTTTTGAAGAATGAGCCTGCGAGTTGACGTGCGTGGCGGGTTAACTGGGGAGCCGTAGCGAGCGGTCTGA
+ ATAGGGCGGAGTCGCGTGCGTCAGACCCAAGCCGGTGATCTACCCGTGGGCAGGTGAAGCTCAGTAAGACTGGGTGGAGGCCCGAACACCAGGGTTGCAA
+ ACCTGGGGATGACTGCGGTAGCGGTGAAAAGCCAATCGAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCACGTCCTGCCGAGGTA
+ GAGCACTGGTTGGCCGAGGCCCCGGTAAGGTCAGCCAAACTCCGAATGCCGGGACGTGGCAGTGAGACGCGGGGGATAAGCTTCGTGGTCGAGAGGGAAA
+ CAGCCCAGATCACCGGCTAAGCCCCGAAGGGTGCTGAGTGGAAAGGATGTAAGCCGCTGTGACAGCCAGGAGGTTGCTTAGAAGCAGCCTCTAAGGAGTG
+ CGTAATAGCTCACTGGTCTAGTGGTTTCCGACAATGTCGGCTAAGCACACCGCCGAAGCCGTGGCGTGCGGGTAGGGGAGCGTCGTGCGCGGGTAAGCGG
+ CGGGGTGACCGCCGTGGACGCCGTGCGAGTGAGAATGAGGCATGAGTAGCGTTCAGAAGTGAGAAACTTCTGCGCCGGATGACCAAGGTTCCTGGGGCAG
+ TTGATCCGCCCAGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGGCAACGGGTGATATTCCGTACGGGACGCAGAAGGTAGCCCACCCAG
+ TGGTGGGGGGTTCTGCCGAGAAAAGCCCCGTACCAAACCGACTCTGGTGGTCGGTAGAGAATACCGAGGCGTCGGGCGAACCGCGGTTAAGGAACTAGGC
+ AAATTGCCCCCGTAACTTCGGGAGAAGGGGGGCCTCGTGGGCCGCAGAGAATGGCCCGGGACTGTTTACTAAAAACACAGGCCGTGCGAAGTCGTAAGAC
+ AAGTATACGGACTGACGCCTGCCCGGTGCCGGAACGTTAAGGGGACGGGTTCGGTCGGAACCTAAGCGCCGGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGGTCTGGGCACTGTCTCAACCGCGGACCCGGCGAAATTGCACTACG
+ AGTAAAGATCTCGTTACGCGCAGCAGGACGGAAGACCCCGGGACCTTCACTGCAGCTTGGCATTGGCGTTTGGAATGGCTTGTGTAGGATAGGCGGGAGA
+ CTGTGAAGCGGGCACGCCAGTGTCCGTGGAGTCCCGTGAAATACCACTCTGGCTGTTTCGACGTCTAACCCGGATTCGGGGACAGTGCCTGGTGGGTAGT
+ TTGACTGGGGCGGTTGCCTCCTAAAGGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCCTGGTTGGAAATCAGGCGTTGAGTGTAAGGGCACAAGGGGGCT
+ TAACTGTGAGACCGACGGTGAGCAGATGCGAAAGGGGCCTAGTGATCCGGCGGTGGCGGTGGAAGCGCCGTCGCTCAACGGCTAAAGGTACCCCGGGATA
+ ACAGGCTGATCATCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGCGAGACAGTTCGGTCCCTATCCGCTGCGCGCGTAGGAGATTGAGGGGGCTGTTCCTAGTA
+ CGAGAGGACCGGAACGGACGAACTCTGGTGTGCCAGTTGTGCCGCCAGGTCAGGCTGGTTGGCTACGTCGGTGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCCCCCGAGAGAGGTCTCCCAGGCTCCCAGTAGATGACGGGTGATGGCCGG
+
+Aeromonas at hydrophila TGACTAAGGTACATGGTGGATGCCTTGGCAGTCAGGCGATGAAGGACGTACTAACTGCGATAAGCCGTGAGCAGTCGGTAAAGACTTCGACCACGGATTT
+ CCGAATGTCGACATGAGCGACCGGGAGACTGAAACATCTAAGTACCCCGGGAAAAGAAATCAACGAGATTCCCTCAGTAGCGGCGAGCGAACGGGGATTA
+ GCCCTGAGTTAGTGGAACGGTCTGGAAAGCCGGCGTACAGGTGAAGCCCCGTAACAAAAATGAGTGGGCGGGACACGTGACATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCTGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTGGGAGCCTCGGGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTACATTTTGTAGCGGGTTAACTAGGGAGCCGTAGGGACCGGTCTTA
+ ACTGGGCGTAGTTGCAAGGTGTAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTTGATAACATCAACTGGAGGACCGAACACTAACGTTGCAA
+ AGTTAGGGATGACTGTGCTGGGGGTGAAAGGCCAATCAAACTCGAGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGATACTACTGGGGTA
+ GAGCACTGTTTGGGCTAGGGTTCACTAACCCCATGCAAACTCCGAATACCAGTATCCGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAA
+ CAACCCAGACCGCCGGCTAAGTCCCAAAGTTGGTTAAGTGGAAACGATGTGGAAGGCTCAGACAGCTAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTAGTCGAGTCGGCCCGGAAGATGTCGGCTAAACCAGGCACCGAAGCTGCGGATAAGTGGTAGGGGAGCGTTCTGTATCTGCAAGGTG
+ TATCGAGAGTATGCTGGAGATATCAGAAGTGCGAATGTGACGTAAGTAACGAAAGGGGGTGAAAAGCCTCCTCGCCGGAAGACCAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGTCGACCCCTAAGGTGAGGCCGAACGTAGTCGATGGGAAGCAGGTAATATTCTGCACGGGACGGAGAGGCTAGGTGGCCAGA
+ CGGCTGGCATTCCTTCCAGGAAAAGCATCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATAGAACCGTAACTTCGGGAGAAGGTTCGCTCTTTGGGTCGCAGTGACCGATGGTGGACTGTTTATCAAAAACACAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGACACCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTCAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGTGTAACCATGGCCATGCTGTCTCCACCCGAGACTCAGTGAAATCGAATTCGC
+ CGTGAAGATCGGTGTACCCGCGGCTAGACGGAAGACCCCGGAACCTTTACTACAGCTTGGCACTGAACATTGAACCTACATGTGTAGGATAGGTGGGAGG
+ CTTTGAAGGCGTGACGCCAGTTGCGCTGGAGCCTCCTGAAATACCACCCTTGTATGTTTGTGTTCTAACGCAGATTCGCGGACAGTGCCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCT
+ TAACTGCGAGACGGACAGTGAGCAGGTACGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGTTGGATGTTGAAGGGATTGCTCCTAGTA
+ CGAGAGGACCGGAGTGAACGAACTCTGGTGTTCGGGTTGTCACGCCAGTGCATGCCCGGTAGCTAAGTCGGCTCGATAACCGCTGAAACATCTAAGCGGA
+ AGCGACCCGAGAGAGTCATCCCAGGGCCGTTGGAGACCACACGTGATGGTGGG
+
+Chlamydia at sp CTATTAAGGCTGCTGGTGGATGCCTAGGCATCAAGGCGATGAAGGACGCGTTTACTGCGAAAAGCTCCGGCGAGCTGGAATAAGCTGGACCCGGAGATAT
+ CCGAATGTCTACATGAGCGACCTGCTGACTGAAACATCTTAGTAAGCAGGGAAAAGAAATCAATGAGATTCCCTAAGTAGCGGCGAGCGAAACGGGATGA
+ GCCCGGATCTAGTCGAATCTTCTGGAAATTGAGCGCACAGGTGAAGCCCCGTAACAAGCCTGAGTGGGCCGGACACGTGAAACCCGGTCTGAATCTGGGG
+ AGACCACTCTCCAAGGCTAAATACTATTGATGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGACTGAAACCAGCAGCTT
+ ACAACGGTCGAAGGCCAGGCTAACGGGTGCCTTTTGCATGATGAGCCAGCGAGTTACATTAAATGGCAGGTTAAGACCGGAGCCGAAGCGAGCGGTGTTA
+ AAAGCGCGTAGTCATTTGATGTAGACACAAACCAGTGATCTATCCATGACCAGTTGAAGCAAGGTAACACCTTGTGGAGGACCGAAAGTTGCCGTTGAAA
+ AGGCTTGGATGAGTGTGATAGGGGTGAAAGGCCAATCAAACTCGAGATATCTTGTCTCTTCGAAATAACTTTCGGGTTAGCCTCGAAAATCTACAGGGTA
+ GAGCACTGAATTCACGCGGGCTCGCCAAAGGAAATCAAACTCCGAATACTGTTTTTCGGGAGATAGACGTGGGGGATAAGCTTCATTGTCAAAAGGGGAA
+ CAGCCCAGATCGCCGATTAAGCCCCAAATCATGCTAAGTGATAAGGAAGTGAGTTTCTAAAACAGTTGGAATGTTGCTTAGAGGCAGCCTTTAAAGAGTG
+ CGTAACAGCTCACCAATCGAGAAACTCCCGATAATATCGGCTAAGCATAGAGCCGAAATCGCGGGTTAGCGGTAGGAGAGCGTAGTATGGCAGCAAGATG
+ TACCGTAAGAGCGTTGGAGCGCATACTAGTGATAATGTGGCATAAGTAACGAAAGGAGGTGAAAATCCTCCTCGCCGAAAATCCAAGGTTCCAGGGTAAG
+ CTCGTCTTCCCTGGGTTAGCCGGTCCCTAAGCCGAGGCTGAACGTAGGCGATGGCAAGCAGGTAATATTCTGCGCTTGACGAAGACGTTAAGCACCGGAT
+ TGGTCCGGTGTCCTTCCAAGAAATAAACCGTACCAAACCGACACAGGTGGATGGAATAATATTCTCAGGCGGCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAATTATCCCCGTAACTTCGGGAGAAGGGGAGCCACTCATGCCGCAGAGAAAGGCCCGGGACTGTTTAACAAAAACACAGCCTATGCAAAGTCGTAAGAC
+ AAGTATATGGTGTGATGCCTGCCCAATGCCAAAAGGTCAAAAGGAGAAGTCAAGTTTGAATTTAAGCCCTGGTGAATGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGTATAACGATCTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTGTAGTAGC
+ AGTGAAGATCTGTTTACCCGCAATAAGACGGAAGACCCCGGAACCTTTACTGTACTCTGATATTGGCTTTTGACTTGTCATGTGTAGGATAACCAGGAGA
+ CATTGAAGTCCCCTCGTCAGGGGGGATGGAGTCACGTGAAATACTGGTCTTGACAAGCCGAAATCTAACGAAAATATTCGGACATTGTCAGACGGGCAGT
+ TTTGCTGGGGCGGTATCCTCCTAAAAGGTAACGGAGGAGTCCAAAGCTTGCCTCATCGTGGTTGGTAATCACGAGTCGAGCGTAAAGGTATAAGGCAAGT
+ TAACTGCGAGACCAACAGTGAGCAGATACGAAAGGGGCTTAGTGATCCGGCGGTGGAAGTGGAATCGCCGTCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTTATCGCCACCAAGAGTTCATATCGACGTGGCGTTTGGCACCTCGATGTCGACTCATCGCATCCTGGGGCTGGAGAAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGCGAGTTGGGTTCAAAACGTGTGAGACAGTTTGGTCCCTATCTGTTGTGGGCGTAGGATATTGAGAGGACTGCTTCTAGTA
+ CGAGAGGACCGAAGTGGACGAACAATGGTGTTCCGGTTGTTCTGCCAAGACACGCCGGGTAGCTATGTCGGAAGGATAAGCGTTGAAACATCTAAACGCA
+ AGCCCCCTAAGAAAGGTATCCCAGACTCCATGTAGACCACTGGTGATGGTTGG
+
+Wolinella CTTTTAAGGCAGATGGTGGATGCCTTGGGTAGTAGGCGATGAAGGACGTACTAGCTGCGATAAGCTTCGGGGAGTTGCCAAAGACTTGATCCGAAGATTT
+ CCGAATGCCTTAATGGGCGACCTAGTGAGTGAAACATCTCAGTAGCTAGGGAAAAGAAATCAAAGAGATTCCGCTAGTAGCGGCGAGCGAACGCGGAACA
+ GGGCGGATCTAGTAGAATCTTTTGGAAAAAGAGCCTAGAGGTGAAGCCCCGTAATAAGCCAGAGTGGCCAGGACACGAGAAATCCGGGCTGAAGCAGGGG
+ AGACCACTCTCCAACCCTAAATACTCTACTACACCGATAGCGAACAGTACCGTGAGGAAAGGTGAAAAGAGAAAAGTGAAAAGACTGAAACCATCTGCCT
+ ACAACATTCGGAGCCCTGGGTGACGGCTGCCTTTTGCATAATGATCCTGCGAGTTGTGGTATCTGGCGGGTTAAGAAGGTAGCCGTAGCGAGCGGTCTTA
+ ATAGGGCGTAGTCAGATGCTGCAGACCCAAGCTAGTGATCTATCCATGGCCAGTTGAAAGTGAGTAACACTCACCGGAGGACCGAACGTGCCCATTGAAA
+ CGGGCGGGATGAGTGTGATAGGGGTGAAAGGCCAATCAAACTTGTGATAGCTGGTCTCTTCGAAATATATTTAGGTATAGCCTCAAGAGTAATAAGGGTA
+ GAGCTCTGATTGGGCTAGCTGCCCGGAAACCCTGTCAAACTTCGAATACTTACCCTTGGGAGTCAGGCGTGGGTGATAAAATCAATCGTCAAAAGGGGAA
+ CAACCCAGACTACCAAATAAGTCCCAAAGCTACCTGAGTGGAAAAGATGTGAGTTACTCAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGTGATTCCTGAAAATATCGGCTAAGGTATGCACCGAATTTGTAGATGAGTGGTAGAAGAGCGTTCTAGTGCGTTAAGGTA
+ TACCGCAAGAGTGCTGGAGCGGCTAGAAGTGAGCATGAGGAATGAGTAGCGAAAAGTGGTGAGAATCCACTTCGCCGTAAATCCAAGGTTCCTACGCTAG
+ CTCGTCATCGTAGGGTTAGTCGGGTCCTAAGTCGAGTCCGAAGGTAGACGATGGCAAATCGGTAATATTCGATACGGGACGCATGGGTTAAACGACCAAA
+ CGGTTGGCGTTCGTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTGGATAGATGAGTATTCTAAGGCGGTGAAAGAACTCTGGTTAAGGAACTCTGC
+ AAACTAACACCGTAAGTTCGCGATAAGGTGTGCCCCCAGGGTCTCAGCAAAGGTCCCCCGACTGTTTACCAAAAACACAGCCTTTGCCAACTCGTAAGAG
+ AAGTATAAGGTGTGACGCCTGCCCGGTGCTCGAAGGTTAAGAGGATCTGTCAAGTTTGAATTGAAGCCCGAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGTTAAATACCGACCTGCATGAATGGCGTAACGAGATGGGAGCTGTCTCAACCAGGGATTCAGTGAAATTGTAGTGGA
+ GGTGAAAATCCTCCTACCCGCGGCAAGACGGAAGACCCCGGGACCTTTACTACAGCTTGGCACTGCCGATGGGAGCATTATGCGCAGGATAGGTGGGAGG
+ CTTTGAAATCTTCACTCTGGTGGAGATGGAGCCCCGTGAGATACCACCCTTAATGTTTCTTCTGCTAACTGGCATAGCAGGACAATGCCTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAAGTAACGGAGGCTTGCAAAGGTTGGCTCAGAATGGTTGGAAATCATTCGTTGAGTGTAATGGCATAAGCCAGCC
+ TGACTGCGAGACAAACAGTGAGCAGAGTCGAAAGGGTCATAGTGATCCGGTGGTTCTGGTGGAAGGGCCATCGCTCAAAGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTCCCCCAAGAGCTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGTAGGAAATTGAGGAGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACATGCACTAGTGTACCAGTTGTTCTGCCAAGACACGCTGGGTAGCTACGCTGGCGTGATAACCGCTGAAACATCTAAGCGGA
+ AGCCGCTCAAGAGAACTTTCCCAGGTCGCAGGAAGACTACTGCTGATGGTTGG
+
+Simkania CTATTAAGGCTATTGGTGGATGCCTTGGCATCGAGGCGATGAAGGACGCGCGTACTGCGATAAGCTTCGGGGAGCTGGATAAAGCATGAACCGAAGATTT
+ CCGAATGTTCACATAAGCAACCTGCTGATTGAGACATCTAAGTAGGCAGGGAAAAGAAATCAATGAGATTCCCGTAGTAGCGGCGAGCGAAGTGGGAAGA
+ GCCCGGACTTAGCATAATCATCTGGGAAGTGAGCGTACAGGTGAAGCCCCGTGGCAGACCTGAGTGGGCCGGACACGTGAAACCCGGTCTGAATCTGGGG
+ AGACCACTCTCCAAGGCTAAATACTCTCGATGACCGATAGTGCAAAGTACAGTGATGAAAGGTGAAAAGACCTGAGTGAAAAGACTGAAACCAGTAGCTT
+ ACAACGGTCAGAGGCCAGGCTGATGGGTGCCTTTTGCATGATGAGCCAGCGAGTTAAGTTATACGGCTGGTTAAGTACGGAGCCGGAGTGAGCGGCGTTA
+ ATAGCGCTCAGTCGTATGATTTAGACACAAACCAGTGATCTATCCATGACCAGATGAAGCACGATAACATCGTGTGAAGGTCCGAAAGTGTATGTTGAAA
+ AATACTGGATGAGTGTGATAGGGGTGAAAGGCCAATCAAACTTGAGATATCTTGTCTCTCCGAAATAACTTTAGGGTTAGCCTTGACTTCTTTTGGGGTA
+ GAGCACTGGATTCCCAAGGGCTCGCCAAAGGAAACCAAACTCCGAATACTAATAGTCAGGAGATAGACGTGGGGGATAAGCTTCATTGTCAAAAGGGGAA
+ CAGCCCAGATCGCCGATTAAGCCCCTAATCATGCTAAGTGATAAGGATGTAAGTTTCACAGACAGTTGGAATGTTGCTTAGAGGCAGCCTTTAAAGAGTG
+ CGTAACAGCTCACCAACCGAGAAATTTCCGATAATAACGGCTAAGCATAGAGCCGAAATCGCGGGTTTGCGGTAGGAGAGCGTAGTATGGCGGTAAGATA
+ TACCGAAAGAGTGTTGGAGCGCATACTAGTGAGGATGTGGCATGAGTAACGAAAGGAAGTGAGAATCTTCCTCGCCGAAAGCCTAAGGTTCCAGGGTAAG
+ CTCGTCTTCCCTGGGTTAGCCGGCCCCTAAGCCGAGGCAGAACGTAGGCGATGGAAAGCAGGTAATATTCTGCGCACGACGAAGATGTTAAGCACCGAAT
+ TGGTTCGGTGTCCTTCCAAGAAATATACCGTACCAAACCGACACAGGTAGGCTGATGAATATTCTCAGGCGGCGAGACAACTCTCGTTAAGGAACTCGGC
+ AAATTATCCTCGTAACTTCGGAAGAAGAGGAGCCCCTTGGGCCGCAGAGAAAGGCCCGGGACTGTTTAACAAAAACACAGCCTATGCAAACTCGTAAGAG
+ AAGTATATGGTGTGATGCCTGCCCAATGCCAAAAGGTCAACAGGAGGCGTTCGGGCTGAATATAAGCCCTGGTGAATGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATCTGGGCGCTGTCTCAACGAGAGACTCGGTGAAATTGTAGTAGC
+ GGTGAAGATCCGTTTACCCGCAGCTAGACGGAAGACCCCGGAACCTTTACTGTACTCTGATATTGGCTTTTGACTTGTCATGTGTAGGATAGCCGGGAGG
+ CTGTGAAAGAGATTCGTCAGGATTTCTGGAGCCTCCTGAAATACCGGCCTTGACATGTTGAAATCTAACGAAGATGTTCGGACATTGTCAGACGGGCAGT
+ TTGACTGGGGCGGTATCCTCCTAAAATGTAACGGAGGAGTTCAAAGCTTGCCTCATCGTGGTTGGCAATCACGATTAGAGCGTAAAGGTATAAGGCAAGT
+ TGACTGCGAGACCAACGGTGAGCAGGTACGAAAGGGACTTAGTGATCCGGCGGTGGAAGTGGAATCGCCGTCGCTTAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTTATCGCCACCAAGAGTTCATATCGACGTGGCGTTTGGCACCTCGATGTCGACTCATCGCATCCTGGGGCTGTAGAAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGCGAGTTGGGTTCAGAACGTGTGAGACAGTTTGGTCCCTATCTGCTGTGGGCGTAGGATATTGAGAAGACTGCTTCTAGTA
+ CGAGAGGACCGAAGTGGACGAACAATGGTGTTCCGGTTGTTCTGCCAAGACATGCCGGGTAGCTATGTCGGAAGGATAAGCGTTGAAACATCTAAACGCA
+ AGCCTCTTAAGAAAAGTATCCCAGACAACCTGAAGACGACGGGTGATGGCTGG
+
+Acinetobacter TAATTAAGGCATGTGGTGGATGCCTTGGCAGTCAGGCGATGAAAGACGTAATAGCTGCGATAAGCTCCGGGGAGGCGCAAAATCCTTGATCCGGAGATTT
+ CTGAATGTTGACATAAGCGACGAGGGGAGTGAAACATCTCAGTACCCTTGGAAAAGAAATCAATGAGATTCCCTTAGTAGCGGCGAGCGAACGGGGATCA
+ GCCCTAATTTAGTGGAACGCTCTGGGAATGCGAACTAGAGGTGAATTCCCGTAACAAGTGAGAGTGGGCGAGGCACGTGAAACCTTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCTGAGTGAAAAGTCTGAAACCGCATGCAT
+ ACAACAGTGGGAGCCGTCGGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATATTCAGTAGCGGGTTAACTAGGGAGCCGTAGAGATCGGTCTTA
+ ATAGGGCGTAGTTGCTGGGTATAGACCCAAACCGGCGATCTATCCATGAGCAGTTGAAGGTTGGTAACACTAACTGGAGGACCGAACACTGTCGTTGAAA
+ AGCCAGGGATGACTGTGATAGGGGTGAAAGGCTAATCAAGCCTGTGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGGATACCATAGGGGTA
+ GAGCACTGTTTCGGCTAGGGTTCACTAAACCGATGCAAACTCCGAATACCTATATCCGGGAGACAGACGCGGGTGCTAACGTCCGTAGTCAAGAGGAAAA
+ CAATCCAGACCGCCAGCTAAGCCCCAAAACTAGTTAAGTGGAAACGATGTGGAAGGCATAGACAGCTAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTAGTCGAGTCGGCCCGGAAGATGTCGGCTAAACTATGTGCCGAAGCTGCGGATTTGTGGTAGGGGAGCGTTCTGTACCGATAAGGTG
+ TATTGAGAGTATGCTGGAGGTATCAGAAGTGCGAATGTGACGTGAGTAACGAAAACGGGTGAAAAACCCGTTCGCCGAAAGACCAAGGTTCCAGTCCAAG
+ TTAATCGGGGCTGGGTGAGTCGACCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAAATTGGTAATATTCAATACAGGACGGAGAGGTTAAGTCACCTGT
+ TGGCAGGGGCTCCTTCCAGGAAAAGTATCGTACCAAACCGACACAGGTGGTCGGTCGAGTAGACCAAGGCGTTGAGAGAACTCTGCTGAAGGAACTAGGC
+ AAAATGGTACCGTAACTTCGGGAGAAGGTACGCTGTTTGCGCCACAGAAACCGGCCGTGAACTGTTTATTAAAAACATAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAAGTGATGGGGTTAAGTCTTGATCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCATAATGATGGCGGCGCTGTCTCCAGCAGAGGCTCAGTGAAATCGAAATCGC
+ TGTGAAGATCAGTGTACCCGCGGCTAGACGGAAGACCCCGGAACCTTTACTGCAGCTTGACATTGAACTTTGACCTTACTTGTGTAGGATAGGTGGGAGG
+ CTTTGAAGTTGGAACGCTAGTTCCAATGGAGCCTCCTGAAATACCACCCTGGTAATGTTGGGTTCTAACTCTGATGCGAGGACCATGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGAAATCACGCGTAGAGTATAAAGGCAAAAGCGCGCT
+ TAACTGCGAGACCCACAGTGAGCAGGTACGAAAGGGTCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGAAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTACCGTGGGCGCTGGAAATTGAGAGGACTGCTCCTAGTA
+ CGAGAGGACCAGAGTGGACGAACTCTGGTGTACCGGTTGTGACGCCAGTCCACGCCGGGTAGCTATGTCGGAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTCCTAAGAAAGATTTCCCAGAGCCGTTCGAGACTAGACGTGATGGTTGG
+
+Klebsiella CGACTAAGGTACACGGTGGATGCCCTGGCAGTCAGGCGATGAAGGACGTGCTAACTGCGAAAAGCGTCGGTAAGGTGATATAACCTTTAACCGGCGATGT
+ CCGAATGTCGACATGAGCGACCGGGGGACTGAAACATCTAAGTACCCCGGGAAAAGAAATCAACGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGCA
+ GCCCAGTGTTAGTGGAACGGTCTGGAAATCCGACGTACAGGTGAAGTCCCGTAACAAAGAAGAGTGGGCGGGACACGTGGTATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTGGGAGCACCGTGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAGGTTAACTAGGGAGCCGCAGGGACCGGTCTTA
+ ACTGGGCGAAGTTGCAGGGTATAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTTGGTAACACTAACTGGAGGACCGAAGACTAATGTTGAAA
+ AATTACGGATGACTGTGCTGGGGGTGAAAGGCCAATCAAACCGGAGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGCATCTTCGGGGTA
+ GAGCACTGTTTCGGCTAGGGTTCACTAACCCGATGCAAACTACGAATACCGATGCACGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCAAAGCTGGTTAAGTGGAAACGATGTGGAAGGCACAGACAGCCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCGAGTCGGCCCGGAAGATGTCGGCTAAACCATGCACCGAAGCTGCGGCATATGGGTAGGGGAGCGTTCTGTACCTGCAAGGTG
+ TGCTGTGAGCATGCTGGAGGTATCAGAAGTGCGAATGTGACATAAGTAACGAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAAACAGGTAATATTCTGTACGGGACGGAGAGGCTATGTTACCGGA
+ CGGCCGGAACATCTTCCAGGAAAAGCATCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGTTGAGATAACTCGGGTGAAGGAACTAGGC
+ AAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGGTGACGTCGAAGATACCGCTGGTGAACTGTTTATTAAAAACACAGCCTGTGCAAACACGAAAGTG
+ ACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAACTCGC
+ TGTGAAGATCAGTGTACCCGCGGCAAGACGGAAGACCCCGGAACCTTTACTATAGCTTGACACTGAACATTGAGCCTTGATGTGTAGGATAGGTGGGAGG
+ CTTTGAAGCGTGGACGCCAGTCTGCGTGGAGCCACCTGAAATACCACCCTTTAATGTTTGTGTTCTAACGTTGACTTGCGGACAGTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGCACGAAGGTTAGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCTAGCT
+ TGACTGCGAGCGTGACGCGGAGCAGGTGCGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGATTGAGGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGCATACTGGTGTTCGGGTTGTCATGCCAATGCATGCCCGGTAGCTAAATCGGAGAGATAAGTGCTGAAACATCTAAGCACA
+ AACTTCCCGAGAGAGTTCTCCCAGGAACGTTGAAGACGACACGTGATGGCCGG
+
+Thermomonospora CTGTCAAGGCACACGGTGGATGCCTTGGCACCAAGCCGATGAAGGACGTGGGAGCTGCGATAAGCCCCGGGGAGCCGCAGCAGGCGAGATCCGGGGATCT
+ CCGAATGTCCACATGAGGGACGCGGCGAGTGAAACATCTCAGTAGCCGCGGAAGAGAAAACAACGTGATTCCCTTAGTAGTGGTGAGCGAACGGGGAACA
+ GGCCGGAGACAGCCGAAGCGCCTGGAACGCCCGGATACAGGTGAACCCCCGTAGCAATCCCAAGTGCACGGGACCCGGGAAAGCTCGTGTGAATCCGCCA
+ GGACCACCTGGTAAGCCTAAATACTCCTGGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGTCCGGTGTGAAAAGACTGAAACCGTGTGCTT
+ ACAACCGTGGGAGCGCCAAGTGACCGGTGCCTTTTGAAGAATGAGCCTGCGAGTTGACGTGCGTGGCAGGTTAACTGGGAAGCCGTAGCGAGCGGTCTGA
+ ACAGGGCGGAGTCGCGCGCGTCAGACCTAAGCCGGTGATCTACCCATGGGCAGGTGAAGCTCAGTAAGACTGGGTGGAGGCCCGAACACCAGGGTTGAAA
+ ACCTGGGGATGACTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCCGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCGCGTTCTGCCGAGGTA
+ GAGCACTGGATGGCCGAGGCCCAGGTAACGTCAGCCAAACTCCGAATGCCGGGACGCGGCAGTGAGACGCGGGGGATAAGCTTCGTAGTCGAGAGGGAAA
+ CAGCCCGGACCACCGGCTAAGCCCCCAAGGGTGCTGAGTGGAAAGGATGTGAGTCGCAGTGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTTCCGACAATGTCGGCTAAGCACACCGCCGAAGCCGTGGCATATGGGTAGGGGAGCGTCGCGCGCGGGTAAGCGG
+ CGGAGTGACCGCCGTGGACGCCACGCGAGTGAGAATGAGGCATGAGTAGCGATGAGGGGTGAGAAACCCCTCCGCCGGATGACCAAGGTTCCTGGGGCAG
+ TTAATCCGCCCAGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAGGGTAGCCCACCCAG
+ TGGTGGGGGGTCCTGTCGAGAAAAACCCCGTACCAAACCGACGCAGGTGGTCGGTAGAGAATACCCAGGCGTCGGGTGAACCGTGGTCAAGGAACTCGGC
+ AAATTGCCCCCGTAACTTTGGGAGAAGGGGGGCCGGTCACGCCGCAGAGACCGGCCCGGGACTGTTTACTAAAAACACAGGCCGTGCGAAGTCGTAAGAC
+ ATGTATACGGACTGACGCCTGCCCGGTGCCGGAACGTTAAGGGGACGGGTTCGGTCGAAACCTAAGCGCCGGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATCTGGGCACTGTCTCGACCGCGGACCCGGCGAAATTGCACTGCG
+ AGTGAAGATCTCGCTACGCGCAGCAGGACGGAAGACCCCGGGACCTTCACTACAGCTTGGCATTGGTGTCTGGAGCGGCTTGTGTAGGATAGGTGGGAGG
+ CTATGAAGCCCGGACGCCAGTTCGGGTGGAGCCCCGTGAAATACCACTCTGGCCGTTTTGATGTCTAACCCGCATTGGGGGACAGTGCCTGGTGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAGGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCCTGGTTGGCAATCAGGTGTCGAGTGTAAGTGCACAAGGGGGCT
+ TGACTGTGAGACCGACGGTGAGCAGGAGCGAAAGGGGACTAGTGATCCGGCACCGGTGGTGGAAGCGGTGTCGCTCAACGGCTAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGAAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGCGAGACAGTTCGGTCCCTATCCGCTGCGCGCGTAGGAGATTGAAGGGACCGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGGACTCTGGTGTGCCAGTTGTGCCGCCAGGTCAGGCTGGTTGGCCACGTCGAAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCTCCCCGAGAGAGGTCTCCCAGGCCCCCAGTAGACCACGGGTGATGGCCGG
+
+Waddlia TTACTAAGGCTGCTGGTGGATGCCTTGGCATCAAGGCGATGAAGGACGCGCGTACTGCGATAATCCTCGGTGAGCTGGAAAAAGCGAGACCCGGGGGATT
+ CCGAATGTCTAAATGAGCGACCTGCCGACTGAGACATCTAAGTAGGTAGGGAAAAGAAATCAAAGAGATTCCCTGAGTAGCGGCGAGCGAAATGGGAAGA
+ GCCCGGATGTAGTCGAACCATCTGGAAATTGGATGCACAGGTGAAGTCCCGTAACAAGCCTGAGTAGGCCGGACACGTGAAACCCGGTCTGAATCTGGGG
+ AGACCACTCTCCAAGGCTAAATACTCTTGATGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCTGAGTGAAAAGACTGAAACCAGCAGCTT
+ ACAACGGTCGGAGGCCAGGCTGACGGGTGCCTTTTGCATGATGAGCCAGCGAGTTAATTTATGTGGCGGGTTAAGAACGAAGCCGAAGCGAGCGGTGTGA
+ ATAGCGCGTAGTCACATGAATTAGACACAAACCAGTGATCTATCCATGGTCAGTTGAAGCAAGGTAACACCTTGTGGAGGACCGAAAGTATACGTTGCAA
+ AGTGTTGGATGAATGTGATAGGGGTGAAAGGCCAATCAAACTTGAGATATCTTGTCTCTCCGAAATAACTTTAGGGTTAGCCTTGAGCTTGTGCGGGGTA
+ GAGCACTGGATCCAATAGGGCTCGCCAACGGGAACCAAACTCCGAATACCGCTGCTCGGGAGATAGACGCGGGGGATAAGCTTCGTAGTCGAGAGGGGAA
+ CAGCCCAGACCGTCATCTAAGCCCCAAATCGTGTTAAGTGATAAGGAAGTAAGTTTCTTAGACAGTTGGTATGTTGCTTAGAGGCAGCCTTTAAAGAGTG
+ CGTAACAGCTCACCAATCGAGAGGCTTCCGATAATAGCGGCTAAACACAGAGCCGAAGGTACGGATAGGTGGTAGGAGAGCGTAGTTAGGCGCCAAGGTG
+ TACCGTAAGAGCGCTGGAGCGCTAACTAGTGAGAATGTGGCATGAGTAACGAAAGGGGGTGAAAATCCCCCTCGCCGAAAATCCAAGGTTCCAGGGTAAG
+ CTCGTCTTCCCTGGGTTAGTCGGTCCCTAAGCTGAGGCTGAACGTAGGCGATGGCAAGCAGGTAATATTCTGCACCTGACGAAGGATAGAAGCATCGGAT
+ TGGTCCGATGTTCTTCCAAGAAATAGACCGTACCAAACCGACACAGGTGGATGGATGAGTATTCTAAGGCGGCGAGATAACCCTCGTTAAGGAACTCGGC
+ AAATTATCCTTGTAACTTCGGGAGAAGAGGAGCCGGTACCGTCGCAGAGAAGGGCCCGGGACTGTTTAGCAAAAACACAGCCTATGCAAACCCGTAAGGG
+ AAGTATATGGTGTGACGCCTGCCCAATGCCAAAAGGTCAAACGGAGATGTTTTGATTGAAGTTAAGCCCTGGTGAATGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGTGTAACGATCTGGGCGCTGTCTCAACGAGGGACTCGGTGAAATTGTAGTAGC
+ AGTGAAGATCTGTTTACCCGCAACAAGACGGAAGACCCCGGAACCTTTACTGTACTCTGATATTGGCTTCTGACTTAACGTGTGTAGGATAGCCGGGAGA
+ CTTTGAAAGTTGCTCGTCAGGGCAGCTGGAGTCTCCTGAAATACCGGTCTCGTTAGGCCGGAGTCTAACGTGAATAGACGGACATTGTCAGACGGGCAGT
+ TTTACTGGGGCGGTATCCTCCTAAAAGGTAACGGAGGAGTCCAAAGCTAACCTCATCGCGGTTGGCAATCGCGAGTGGAGCGTAAAGGTATAAGGTTGGT
+ TAACTGTGAGACCTACAGTGAACAGAAACGAAAGGGGCTTAGTGATCCGGCGGTGGAAGTGGAATCGCCGTCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTTATCGCCACCAAGAGTTCATATCGACGTGGCGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGAAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGCGAGCTGGGTTCAAAACGTGTGAGACAGTTTGGTCCCTATCTGTTGTGGGCGTAGGATATTGAGAGGACTGTTCCTAGTA
+ CGAGAGGACCGGAATGGACGAACGATGGTGTTCCTGTTGTTCTGCCAAGGCAAGCAGGGTAGCTAAGTCGGAAGGATAAGCGTTGAAACATCTAAACGCA
+ AGCCTCCTAAGAAAGGTATCCCAGACGCCATGTAGACGACTGGTGATGGCTGG
+
+Pseudomonas at stutzeri TGAAGAAGGCATACGGTGGATGCCTTGGCAGTCAGGCGATGAAAGACGTGGTAGCTGCGAAAAGCTTCGGGGAGTCGCAAAAGACTTGATCCGGAGATGT
+ CTGAATGTCAACATGAGCGACCAGGGGACTGAAACATCTAAGTACCCTGGGAAAAGAAATCAACGAGATTCCCTTAGTAGTGGCGAGCGAACGGGGATTA
+ GCCCAAGTTTAGCGGAACGCTCTGGAAATGCGGCCTAGTGGTGAAGCCCTGTAGCAAAATCGAGTGGACGGAGCACGAGAAACTTTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTATGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCGTATGCGT
+ ACAACAGTGGGAGCCTTAGGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATTTTCAGTGGCGGCTTAACAAGGGAGGCGTAGCGAGCGGTCTTA
+ ATAGGGCGTAGTCGCTGGGAATAGACCCAAACCGGCGATCTATCCATGGGCAGTTGAAGGTTAGTAACACTGACTGGAGGACCGAAGACTACCGTTGAAA
+ AGTTACGGATGACTGTGATCGGAGTGAAAGGCTAATCAAGCTCGAGATAGCTGGTCTCCTCGAAAGCTATTTAGGTAGCGCCTCGTGCACTGCTGGGGTA
+ GAGCACTGTTTCGGCTAGGGTTCACTAAACCGATGCAAACTCCGAATACCAGTGCACGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAA
+ CAACCCAGACCGTCAGCTAAGTCCCAAAACTGGTTAAGTGGAAACGATGTGGAAGGCTTAGACAGCTAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTAGTCGAGTCGGCCCGGAAGATGTCGGCTAAACCAGGTACCGAAGCTACGGGTCAGCGGTAGAGGAGCGTTCTGTACCTGTAAGGTC
+ AGTTGAGAGCTGGCTGGAGGTATCAGAAGTGCGAATGTGACATGAGTAACGAATGCGAGTGAAAAACTCGCACGCCGAAAGACCAAGGTTCCTGCGCAAG
+ TTAATCGACGCAGGGTGAGTCGGTCCCTAAGGCGAGGCTGAGCGTAGTCGATGGGAAACGGGTAATATTCCGTACGGGACGGAGAGGCTAGGCCACAAGT
+ TGGCTTGGGTTCCTTCCAGGAAAAGCACCGTACCAAACCGACACAGGTGGTTGGTAGAGAATACCAAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATGGCACCGTAACTTCGGGAGAAGGTGCGCCGGTTGCGTCGAAGATACCGGCCGTGGACTGTTTATTAAAAACACAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTCAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATGGCGGCGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGC
+ TGTGAAGATCAGTGTATCCGCGGCTAGACGGAAGACCCCGGAACCTTTACTATAGCTTTGCACTGGACTTTGAATTTGCTTGTGTAGGATAGGTGGGAGG
+ CTTTGAAGCGTGGACGCCAGTTCGCGTGGAGCCACCTGAAATACCACCCTGGCAACTTTGGGTTCTAACTCTGATTCGAGGACAGTGTATGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGACCGGTCGGAAATCGGTCGTAGAGTATAAAGGCAAAAGCGCGCT
+ TGACTGCGAGACAGACAGTGAGCAGGTACGAAAGGGTCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGCCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGACGTTTGAGATTGAGAGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGAACTCTGGTGTTCCGGTTGTCACGCCAGTGCATGCCGGGTAGCTACGTCGGAGAGATAACCGCTGAAACATCTAAGCGGA
+ AACTTCCTAAGAGAGATCTCACAGGGCCGTCGAAGACTACACGTGATGGTTGG
+
+Thiobacillus TGAATAAGGCATACGGTGGATGCCTTGGCAGAGAGGCGATGAAGGACGTGGATACTGCGAAAAGCCTCGGGGAGCTGTAAGAAGCTTGATCCGGGGATAT
+ CCGAATGTTGACATAAGCCACGCGGTGACTGAAACATCTCAGTAGCTGCGGAAAAGAAATCAACGAGATTCCCGTAGTAGCGGCGAGCGAACCGGGAGCA
+ GCCTCATCTTAGGAGAACGACCTGGGAAGTTGGCCTAGTGGTGAAGCCCCGTATCAAAGCAAAGTGGGCGGGACACGTGGAATCCTGTCTGAAGATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTCTCTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGAGCGGAGTGAAAAGTCTGAAACCGTATGCCT
+ ACAACAGTGGGAGCCCTGGGTGACTGGTACCTTTTGTATCATGGGTCAGCGACTTACTTTCTGTGGCGGCTTAACAAGGAAGCCGTAGGGACCGGTCTGA
+ ATAGGGCAATGTCGCAGGGAGTAGACCCAAACCGACGATCTATCCATGGTCAGATGAAGGTGGGTAAAACCTACTGGAGGTCCGAACACGCCCGTTGAAA
+ AGGTCGGGATAACTGTGATAGGAGTGAAAGGCTAAACAAGTCCGAGATAGCTGGTCTCCCCGAAAGCTATTGAGGTAGGCCGTCGCGTACCTGCCGGGTA
+ GAGCACTGTTACGGCTAGGGCTAGCTAACCCGTTGCAAACTCCGAATACCGGTACGCGGCAGACAGTCGCGGGTGCTAAGCTCCGTCGTCAAGAGGGATA
+ AACCCCAGACCGCCAGCTAAGTCCCCAAATTGGCTCAGTGGAAACGATGTGGAAGGCCCAGACAGCTAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTAGTCGAGTCGGCCCGGAAGATTTCGGCTAAGCCATATACCGAAGCTGCGGGTTAGCGGTAGGGGAGCGTTCGGTACCGATAAGGTG
+ TGTTGTGAGCATGCTGGAGGTATCCGAAGTGCGAATGTGACATGAGTAGCGAAAGGGTGTGAAAACCACCCTCGCCGTAAGCCCAAGGTTCCTGCGCAAG
+ TCAATCTGCGCAGGGTGAGTCGGCCCCTAAGGCGAGGCCGAACGTAGCTGATGGGAAATCGGTAATATTCGATACGTGACGGAGAAGGTAGCTCACCGGT
+ TGGTGGGGAGTTCTTCCAGGAAAAGCACCGTACCAAACCGACACAGGTGGGCGGAAGAATATTCCAAGGCGTTGAGAGACCTCGGGTGAAGGAACTCGGC
+ AAATTGACACCGTAACTTCGGAAGAAGGTGTGCCCTCTAGGTCGCAGAGATCGGTGGTGAACTGTTTAACAAAAACACAGGCTCTGCAAAGACGAAAGTC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGTGAGGGGGTCAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCACACTGTCTCCACCCGAGACTCAGCGAAGTTGAAGTCGC
+ TGTGAAGATCAGCGTTCCCGTGGCAAGACGGAAGACCCCGGCACCTTTACTACAACTTAGCATGGGACCTTGAGATGATTTGTGTAGGATAGGTGGGAGG
+ CTGTGAAACCGGGACGCTAGTTCTGGTGGAGCCGCCTGAAATACCACCCTGGTGATCTTGGGTTCTAACCTCGATTCAGGGACAGTGTTTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGCACGAAGGTACCCTCAGCGCGGTCGGAAATCGCGCAGTGAGTGCAAAGGCACAAGGGTGCT
+ TGACTGCGAGACAGACAGTGAGCAGGTGCGAAAGGGTCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATTCCCCCCAAGAGTTCACATCGACGGGGGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGCCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGCGACCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCATGGGCGTTGGAGATTGAAGGAACTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGTACTCTGGTGTTCCGGTTGTTCTGCCAAGGCATGCCGGGTAGCTATGTCGGCGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCATCCAAGAGAGATCTCCCAGGGACGTGGAAGACTACACGTGATGGCTCC
+
+Thermomonospora at chro TTGTGTAGGCACACGGTGGATGCCTTGGCATCAAGCCGATGAAGGACGTGGGAGCTGCGATAAGCCTCGGGGAGTCGCAGCAGACGTGATCCGGGGATGT
+ CCGAATGTCTTCATGAGGGAGCCGGGGAGTGAAACATCTCAGTACCCGCGGAAGAGAAAACAATGTGATTCCGTGAGTAGTGGTGAGCGAAAGCGGATGA
+ GGCTGGAGGTAGCCGAAGGTTCTGGGAAGGCTGCCTAGACGTGAAGCCGGGTAGTAACCCCGAGTGCACGGGGCTCGAGGAATCCTGTGTGAATCTGCCA
+ GGACCACCTGGTAAGCCTGAATACTTCTGGTGACCGATAGTGGAGAGTACCGTGAGGAAAGGTGAAAAGTCCGGTGTGAAAAGACTGAAACCGTGTGCCT
+ GCAACCGTGGGAGCGTTATGTGACTGGTGCCTTTTGAAGAATGAGCCTGCGAGTTACGGTGTGTGGCGGGTTAACTGGGGAGCCGTAGCGAGCGGTCTGA
+ ATAGGGCGGAGTCGCATGCTGTAGACCCAAGCGGGTGATCTACGCATGGGCAGGTGAAGCTCAGTAAGACTGGGTGGAGGCCCGAACACCAGGGTTGAAA
+ ACCTGGGGATGACTGTTGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTGGGTGCAGCGTCGCGTTCTGCCGAGGTA
+ GAGCACTGGATGGCCGAGGCCCAGGTAACGTCAGCCAAACTCCGAATGCCGGGACGCGGCAGTGAGACGCGGGGGATAAGCTTCGTAGTCGAGAGGGAAA
+ CAGCCCGGACCACCGGCTAAGCCCCTAAGGGTGCTGAGTGGAAAGGATGTGAGTCGCAGTGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTTCCGATAATGTCGGCTAAGCACATCGCCGAAGCCGTGGCATGTGGGTAGGGGAGCGTCGTGCGCGGGTAAGCGG
+ CGGAGTGACCGTCGTGGACGCTGTGCGAGTGAGAATGAGGCATGAGTAGCGATGAGGGGTGGGAAACCCCTCCGCCGGATGACCAAGGTTCCTGGGGCAG
+ TTAATCCGCCCAGGGTAAGTCGGGGCCTAAGGCGAGGCCGAACGTAGTCGATGGATAACGGGTGATATTCCGTACGTGACGCAGAAGGTAGTCCACCCAG
+ TGGTGGGGGATTCTGCCGAGAAAAGCCCCGTACCAAACCGACTCAGGTGGTCAGTAGAGAATACTCAGGCGTCGGGTGAACTGTGGTTAAGGAACTCGGC
+ AAATTGCCCCCGTAACTTCGGGAGAAGGGGGGCCTCTTGGGTCGCAGTGGCCGGGGGAGGACTGTTTACTAAAAACATAGGCCGTGCGAAGTCGTAAGAC
+ ATGTATACGGACTGACGCCTGCCCGGTGCCGGAACGTTAAGGGGACCGCTTTGGTGAGAACTTAAGCGCCGGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCGCTGTCTCAACCGCAGACCCGGCGAAATTGCACTACG
+ AGTAAAGATCTCGTTTCGCGCAGCAGGACGGAAGACCCCGGGACCTTCACTGCAGCTTGACATTGGTGTCTGGGGCGGCTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAGCCTGGACGCCAGTTCGGGTGGAGTCTCGTGAAATACCACTCTGGTCGTTTTGATGTCTAACCCGCATTGGGGGACAGTGTCTGGTGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAGGGTAACGGAGGCGCCCAAAGGTCCCCTCAGCCTGGTTGGTAATCAGGTGTTGAGTGTAAGTGCACAAGGGGGCT
+ TGACTGTGAGACCGACGGTGAGCAGGAGCGAAAGGGGACTAGTGATCCGGCACCGGTGGTGGAAGCGGTGTCGCTCAACGGCTAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGCGAGACAGTTCGGTCCCTATCCGCTGCGCGCGTAGGAGATTGAGGGGGCTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTGTGCCAGTTGTGCCGCCAGGTCAGGCTGGTTGGCTACGTCGGAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCTCCCCGAGAGAGGTCTCCCAGGCCCCCAGGAGATGACGGGTGATGGCCGG
+
+Salmonella at bongori CGACCAAGGTACACGGTGGATGCCCTGGCAGTCAGGCGATGAAGGACGTGCTAACTGCGAAAAGCGCCGGCGAGGTGATATAACCGTGACCCGGCGATGT
+ CCGAATGTCACCATGAGCGACCGGGGGACTGAAACATCTAAGTACCCCGGGAAAAGAAATCAACGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGGA
+ GCCCAGCGTTAGTGGAAGCGTCTGGAAAGCACGCGTACAGGTGAAGCCCCGTAACAAAGATGAGTGGGCGGGACACGTGGTATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTGGGAGCACCGTGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAGGTTAACAAGGGAGCCGGAGGGACCGGTCTTA
+ ACTGGGCGAAGTTGCAGGGTATAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTTGGTAACACTAACTGGAGGACCGAAGACTAATGTTGAAA
+ AATTACGGATGACTGTGCTGGGGGTGAAAGGCCAATCAAACCGGAGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGCATCTCCGGGGTA
+ GAGCACTGTTTCGGCTAGGGCTCGCTAACCCGATGCAAACTGCGAATACCGGTGCACGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCAAAGCTGGTTAAGTGGAAACGATGTGGAAGGCCCAGACAGCCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCGAGTCGGCCCGGAAGATGTCGGCAAAACCATGCACCGAAGCTGCGGCACATGGGTAGGGGAGCGTTCTGTACCGTTAAGGTG
+ TGCTGTGAGCATGCTGGAGGTATCAGAAGTGCGAATGTGACATAAGTAACGAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAAACGGGTAATATTCCGTACGGGACGGAGAGGCTATGTTGCCGGA
+ CGGCCGGAACACCTTCCAGGAAAAGCATCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGATTGCGTCGAAGATACCGCTGGTGAACTGTTTATTAAAAACACAGCCTGTGCAAACACGAAAGTG
+ ACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTCAAGTCCTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAACTCGC
+ TGTGAAGATCAGTGTACCCGCGGCAAGACGGAAGACCCCGGAACCTTTACTATAGCTTGACACTGAACACTGGTCCTTGATGTGCAGGATAGGTGGGAGG
+ CTTTGAAGCGTGGACGCCAGTCTGCGTGGAGCCTCCTGAAATACCACCCTTTAATGGCTGTGTTCTAACGTGGAATTGCGGACAGTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGCACGAAGGTTGGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAATGGCATAAGCCAGCT
+ TGACTGCGAGCGTGACGCGGAGCAGGTGCGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAAGTTGAGGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGCATACTGGTGTTCGGGTTGTCATGCCAATGCATGCCCGGTAGCTAAATCGGAGAGATAAGTGCTGAAACATCTAAGCACA
+ AACTTCCCGAGAGAATCTTCCCAGGAACGTTGAAGACGACAGGTGATGGCCGG
+
+Neisseria at meningitid TGAATAAGGCATCAGGTGGATGCCTTGGCGATGAGGCGACGAAGGACGTGTAAGCTGCGAAAAGCGCGGGGGAGCTGCAATAAGCAAGATCCCGCGATGT
+ CCGAATGTCCACATGAGCGACCCGGAGACTGAACCATCTAAGTACCCGGGGAAAAGAAATCAACGAGATTCCGCAAGTAGTGGCGAGCGAACGCGGAGGA
+ GCCTACGGATAGAAGAACAAGCTGGGAACTTGACCTAGTGGTGAAGTCCCGTATCAATGAAAAGTGGGCGGGGCACGTGAAATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTCATCGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCTGATGCAT
+ ACAACAGTGGGAGCGCAGTGTGACTGGTACCTTTTGTATAATGGGTCAACGACTTACATTCAGTAGCGGCTTAACAAGGGAGGCGTAGGGACCGGTCTTA
+ ATAGGGCGGAGTTGCTGGGTGTAGACCCAAACCAGTGATCTATCCATGGCCAGTTGAAGGTGCCTAACAGGTACTGGAGGACCGAACACGCATGTTGCAA
+ AATGCGGGATGAGTGTGATAGGGGTGAAAGGCTAAACAAACTCGAGATAGCTGGTCTCCCCGAAAACTATTTAGGTAGTGCCTCGAGCACTGATGGGGTA
+ AAGCACTGTTATGGCTAGGGTTGACTAACCCATGGCAAACTAAGAATACCATTGCTCGGGAGACAGACGCGGGTGCTAACGTCCGTTGTCAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCAAATAAGATTAAGTGGAAACGAAGTGGAAGGCCCAGACAGCCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCGAGTCGTCCCGGAAGATGTCGGCTAAATCTATAACCGAAGCTGCGGATTTATGGTAGGGGAGCGTTCTGTACTGATAAGGTG
+ CATTGTAAGTGTGCTGGAGGTATCAGAAGTGCGAATGTGACATGAGTAGCGAAAGCGGGTGAAAAGCCCGCTCGCCGAAAGCCCAAGGTTCCTGCGCAAG
+ TTCATCGGCGTAGGGTGAGTCGGCCCCTAAGGCGAGGCAGAACGTAGTCGATGGGAAACAGGTAATATTCTGTACGGGACGGAGAGGTTAGGTTGCAAGT
+ TGGCTTGAACCCCTTCCAGGAAAAGCACCGTACCAAACCGACACAGGTGGGCAGGAGAGAATTCTAAGGCGTTGAGAGAACTCAGGAGAAGGAACTCGGC
+ AAATTGATACCGTAACTTCGGGAGAAGGTATGCCCTTTGGGTCGCAGAGAATGGTGGTGGACTGTTTATTAAAAACACAGCCTCTGCTAACACGAAAGTG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCTGGAAGGTTAATTGAAGATGTAGAGATCGGATCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCTGAGACTCAGCGAAGTTGAAGTGGT
+ TGTGAAGATCAATCTACCCGCTGCTAGACGGAAGACCCCGGAACCTTTACTGTAGCTTTGCATTGGACTTTGAAGTCACTTGTGTAGGATAGGTGGGAGG
+ CTTAGAAGCAGAGACGCCAGTCTCTGTGGAGCCTCCTGAAATACCACCCTGGTGTCTTTGGGTTCTAACCCAGATTCGGGGACCGTGCATGGTAGGCAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGTTCGAAGGTTACCTAGGTCCGGTCGGAAATCGGACTGATAGTGCAATGGCAAAAGGTAGCT
+ TAACTGCGAGACCGACAGTGAGCAGGTGCGAAAGGGACATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATTCCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGTAGTCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGTGAGCTGGGTTTAAAACGTGTGAGACAGTTTGGTCCCTATCTGCAGTGGGCGTTGGAAGTTGACGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGAACTCTGGTGTACCGGTTGTAACGCCAGTTCAAGCCGGGTAGCTAAGTCGGAGAGATAAGCGCTGAAACATCTAAGCGCA
+ AACTCCCTAAGAGAGACTTCCCAGAGTCGTTCGAGACCAGACGTGATGGTGGG
+
+Ureaplasma TTACTAAGGCTTATGGTGAATGCCTTGGGACAAAGGCGATGAAGGACGTGCTAACTGCGATAAGCAACGGGTAGCTGATAAAGGCTTAATCCGTTGATCT
+ CCGAATGCTGTCATAGCGAACCTGGTGAGTGAAACATCTCAGTAACCAGGGAAAAGAAAACGAAGTGATTCCCTGTGTAGCGGCGAGCGAAAGGGGAGTA
+ GGCCGGAGATAGTAGAATTGGTTGGGAACCAAATCTAGAGGTGAAATCCCGTAACAATCCTGAGTGGGCGGGACACGTGAAATCCTGTCTGAATCCACCC
+ AGACCATTGGGTAAGCCTAAATACTATTTGTCACCGATAGAGCATAGTACCGTGAGGAACGGTGAAAAGACAGGAGTGAAAAGACTGAAACCATAAGCTT
+ ACAAGTGTTAGAGCACAGTGTGATAGGTGCCTTTTGAAGTATGAGCCAGCGAGTTATTATAGCATGCGGGTTAAAAGAGGAGCCGTAGGGACCGGTCTTA
+ ATAGGGCGTAGTATGTTATAATAGACGCAAACGGGTGATCTATCCATGGGCAGTTGAAGGTGAATAACATTCACTGGAGGACCGAACACTTTCGTTGAAA
+ CGACAGGGATGACTGTGATAGTGGTGAAATTCCAATCGAACTCGTGATAGCTCGTCTCGTCGAAATATTTTTAGGAATAGCGTTAGATGGATATGGGGTA
+ AAGCACTGAATCTATGAGCGCCTGTGAAATAGAATCAAACTCTGAATACCATCCTCTAGCAGTCAGACGTGGGGGATAAGCTTCATTGTCGCGAGGGAAA
+ CAGCCCAGATCATTAACTAAGTCCCTAATAATGCTAAGTGGAAACGATGTGAGTTTCATAAACAGCAAGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAACAGCTCACTTGTCGAGAGACTCCGGAAGATGTCGGCTAAGCATATAACCGAAGTTATGGGTATGCGGTAGACGAGTGTTGTATAGGGGCAAGGTA
+ GACTGTGAGACTACTGGACTTTATACAAGTAAGAATGTGGCGTGAGTAACGAATGAGAGTGAGAATCTCTCAAACCGATTGACTAAGGTTCCTGGGCAAG
+ GTCGTCCTCCCAGGGTAAGTCGGATCCTAAGGCGAGGCTGAACGTAGTCGATGGAAAACAGGTAATATTCTGTACGTGACGGAGAGGTTATATGTCCGGT
+ TGGCCGGCATACCTTCCAAGAAAAGCTCCGTACCGAACGAACACACGTGGTCAGGAGAATATCCTAAGGTTGCGAGTTAACTACAGTTAAGGAACTCTGC
+ AAATTAACCCCGTACGTTAGCAATAAGGGGTGCTCGTAGGGCCGCAGTGAATGCGAGGGGACTGTTTAACAAAAACACAGCCTATGCTAAGTCGTAAGAC
+ ATGTATATGGGGTGACACCTGCCCAATGCTGTAAGGTTAAAGAAGAATGTCAAGTTTTAACTGAAGCCCCAGTGAATGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAATTCCGTCCCGCTTGAATGGTGTAACCATCTCTTGACTGTCTCAACTGTAGACTCGGTGAAATCCTGGTGAG
+ GGTGAAGACCCCTCTTGGCGTGATTGGACGGAAGACCCCAGAAGCTTTACTGTAGCTTAATATTGGGAAATTTTATTACTTGTAGAGCATAGGTAGGAGA
+ CTGTGAAGTATACTCGCTAGGGTATATGGAGTCACGTGGAATACTACCCTTGTGATAAGATTCTCTAACCTGCATTGGGGGACAGTGTTAGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAAGGTAACGGAGGCGCGCAACGGTACCCTCAGCACGGTTGGAAATCGTGTATAGAGTGTAATGGTATAAGGGTGCT
+ TGACTGTGAGACTTACAGTGAACAGGTAGGAAACGGTCATAGTGATCCGGTGGCTCAGATGGAATGGCCATCGCTCAACGGATAAAGCTACTCTGGGATA
+ ACAGGCTGATAGTGCCCAAGAGTTCATATCGACGGCACGTTTGGCACCTCGATGTCGACTCATCTCATCCTGGAGCTGAAGCAGGTTCAAGGGTTCGCTG
+ TTCGCCGATAAAGAGATACGTGAGTTGGGTTCAAACCGTGTGAGACAGGTTGGTCCCTATCTGTCATGCCCGTAGGAAGTTGAGAAGACTGTTCCTAGTA
+ CGAGAGGACCGGAATGGACACACTCTTGTGATCCTGTTGTCGCGCCAGCGCATGCAGGGTAGCAACGTTGGATAGAGAAACGCTGAAACATCTAAGTGTA
+ AACTACTTAAGATAATCTTCCCAGAATCGTTAAAGACTATACGTGATGGTCGG
+
+Synechocystis CTACAAAGGCTAACGGTGGATACCTTGGCACACAGGCGAAGAAGGACGTGGTTACGACGAAACGCTTCGGGGAGCTGGAAAAAGCATGATCCGGAGGTGT
+ CCGAATGCTAAAAAAGGCAACCTAGTGACTGAAACATCTTAGTAGCTAGGGAAAAGAAAACAAAGTGATTCTCCAAGTAGCGGCGAGCGAACGGGGAACA
+ GCCTGGAATTAGACGAAGCAGCTGAAAACTGCACCGAGGGGTGAAGTCCTGTATCAAACCCGAGTGGTCGGAGCTCGTGGAATTCCGATTGAATCAGCCG
+ GGACCACCCGGTAAGGCTAAATACTATGTGTGACCGATAGCGTAAAGTACCGCGAGGAAAGGTGAAAAGACCGGAGTGAAAAGAATGAAACCGTTAGCCT
+ ACAACAATGGGAGCTCAGAGTGACCGGTGCCTGTTGAAGAATGAGCCGGCGACTTACAGGTTGTGGCAGGTTAAGTTCGAAGCCAAAGTGAGCGGCCTGA
+ ATAGGGCGTAGTCACAATTTGTAGACCCAACCCGGTGATCTAACCATGGCCAGATGAAGCTTAGTAACACTAAGTGGAGGTCCGAAGACTAATGTTGAAA
+ AATTACGGATGAGTGTGTTAGGGGTGAAATGCCAATCGAACCCGAGCTAGCTGGTCTCCCCGAAATGTGTTTAGGCGCAGCGGTTGTTCACTTGGGGGTA
+ AAGCACTGTTTCGCTGCGCGGGGCTGAAAGTGAGGCAAACTCAGAATACCCAGAACGACCAGTAAGACGTGGGGGATAAGCTTCATCGTCGAAAGGGAAA
+ CAGCCCAGACCACCAGCTAAGTCCCCAAACTCACTAAGTGAAAAGGAGGTGGAGTGCATTGACAACCAGGAGGTTTCCTAGAAGCAGCATTAAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGCGCTCCCCGAAAATGACGGCTAAGTGATGTACCGAAGCTGTGGACATGTGGTAGGGGAGCGTTCTGTAAGGGTAAGCAC
+ TAGCGCAACAGGTGTGGACAGTACAGAAGTGAGAATGCGGCTTGAGTAGCGAATATGGGTGAGAATCCCATACCCCGAAATCCTAAGGTTCCTCCGGAAG
+ CTCGTCCGCGGAGGGTTAGTCAGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACCGGCAATATTCGGTACGGGACGGAGAGGCTAGTGCAACTGT
+ TGGCAGTGCATCCTTCCAAGAAAAGCCCTGTACCAAACCGACACAGGTAGGAGGTAGAGAATACTAAGGGGGCGAGGTAACTCTCTCTAAGGAACTCGGC
+ AAAATTACCCCGTAACTTCGGGAGAAGGGGTGCCTCCAGAGTCGCAGTGAATGGCCCGGGACTGTTTACCAAAAACACAGGCTCCGCAAAGTCGTAAGAC
+ CAGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAAGGAAGTTGGTTAAGTAGCGACTGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGCGAAATAGGATTGTC
+ TGTGAAGATCGGACTCCCTGCACCTGGACAGAAGACCCTAGAAGCTTTACTGTAGCTTGGAATTGGGTTCGGGCTTTGCTTGCGCAGGATAGGTGGGAGA
+ CTATGAAGTTGCTCTTGTGGGAGTAATGGAGTCACGTGAGATACCACTCTGGTGAGGCTAAATTCTAACTTGTATAGAAGGACAATTTCAGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCGCAAAGGTTTCCTCAGGCTGGTTGGAAATCAGCCGAAGAGTGTAAAAGCAGAAGGAAGCT
+ TGACTGTGAGACTGACAGTAAACAGGGACGAAAGGGCTTTAGTGATCCGACGGCACTGGTGGAAGGGCCGTCGCTCAACGGATAAAGTTACTCTAGGATA
+ ACAGGCTGATCTCCGCCAAGAGTTCACATCGACGCGGAGTTTGGCACCTCGATGTCGGCTCATCGCAACCTGGGGCGGTAGTACGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGTGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCATATCCGGTGTAGGCGTAAGAGTTTGAGAGGAACTTCCTTAGTA
+ CGAGAGGACCGGGAAGTACGCACTCTGGTGTACCTGTTATCGTGCCAACGTACGCAGGGTAGCCAAGTCGGGTGGATAACCGCTGAAACATCTAAGTGGA
+ AGCCCCCTAAGAGAGTACTCTCAGGTCACGGGAAGACTACCGTTGATGGCTCT
+
+Peptococcus TAACTAAGGCATGCGGTGAATGCCTAGGCGCCGAGCCGAAGAAGGACGCGGTAACTGCGAAAAGCTACGTTGAGTCGCAAGAGACCTGACACGTAGATAT
+ CCGAATACCTCCATGGGGCACCCGGGGACTGAAACATCTAAGTACCCGGGGAAGAGAAAGAAAATCGATTCCCCCAGTAGCGGCGAGCGAAGCGGGAAGA
+ GCCCGGATTTAGCAGAATGACCTGGGAAGTCAGCCTAGAGGTTAAGCCCTGTAGCAAACCGGAGTCCACGAGGCACGAGGAATCTCGTGGGAAGGCGGGG
+ GGCCCACCCCCCAAGGCTAAATACTCCCGGCGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCTCGGAGTGAAAAGACTGAAACCGCATGCTT
+ ACAACAGTCACAGCTCTGAGTAGTGGGTACTTTTTGTAGAACGGACCGGCGAGTTGCGTTAAGAAGCCGGTTAAGAAAGGAGCCATAGCGAGCAGTCTTA
+ ATAGGGCGAAGTTTCTTGGCGCAGACCCAAACCGGTGATCTACCCATGAGCAGTTGAAGCGTTGTAAAACAACGTGGAGGACCGAAAGGTGTCGTTGAAA
+ AGACATGGATGACTGTGGTAGGGGTGAAATTCCAATCGAACCCGAGATAGCTGGTCTCCTCGAAATAGCTTTAGGGCTAGCCTCAAGGACCTACGAGGTA
+ AAGCACTGACTGGATGCGGGCTAGCCAAATCTTATCAAACTCAGAATGCCGTAGCTTGGGAGTCAGACATGGGGGATAAGCTTCATAGTCAAAAGGGAAA
+ GAACCCAGACCGTCGTCTAAGTCCCCAAGTGTGTTAAGTGGAAAGGATGTGAATCGCTCAGACAACCAGGATGTTGCTTAGAAGCAGCCTTAAGAGAGTG
+ CGTAATAGCTCACTGGTCCAGGGGTTCCCGAAAATGTCGGCTAAACACCACACCGAAGACACGGAAATTTGGTAGAGGAGCGATCCATTAGAACAAGCGA
+ GAGCGCAACGCTCGTGGACCCAATGGAAGAGAGAATGCGGTATAAGTAACGAAAAGAGGTGAGAATCCTCTTCGCCGAAAGTCTAAGGTTCCTGGGGAAG
+ CTCGTCCGCCCAGGGTAAGTCGGGACCTAAGGCAAGGCCGAACGTAGTCGATGGGAAACAGGAGAAATTCTGTACGTGACGCAGAGGGTACAGCGCGCCG
+ TTGGGCGCCTGCCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGACGGTAGAGAATACTAAGGCGGCGAGATAACTCTTGTTAAGGAACTCGGC
+ AAAATGAACCCGTAACTTCGGGAAAAGGGTTGCTCCAAGGGCCGCAGAGAAGGGTCCAGGACTGTTTAGCAAAAACACAGGCATTGCCAAATCGTAAGAT
+ ACGTATAATGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAAGAGTCAAGTTTGAACCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGACGCTGTCTCAACAAGGGACTCGGTGAAATTGAATTACC
+ GGTAAAGATCCGGTTACCTGCGATAGGACAGAAGACCCCAGGAGCTTTACTGCACCCTGATATTGGGTTTCGGTTATTTATGTACAGCATAGGTGGGAGA
+ CAGCGAAGCGAGAGCGCCAGTTTTCGCAGAGTCCCCTGGGATACCACCCTTAAGTGATTGAATTCTAACAAGGATTATTGGACATTGTCAGGCAGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCTCAAAGGTTCCCTCAGAACGGATGGAAATCGTTCATAGAGTGTAAAGGCAGAAGGGAGCT
+ TGACTGCGAGAGCAACACTGAGCAGGAAGGAAACGGACTTAGTGATCCGGCGGTTGCGGTGGAAGTGCCGTCGCTCAACGGATAAAGCTACCCTGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCATCGTAGGCGTAGGATATTGAGAGGCCTGACCCTAGTA
+ CGAGAGGACCGGGTTGGACACACGCTGGTTAACCGGTTGTCGTGCCAACGCAAGCCGGGTAGCTAAGTTGGCATGATAAACGCTGAAACATCTAAGCGTA
+ AGCAGCCTAAGAGAGATATCCCAGACCCCAGAGAGACGAATGGTGATGGTCGG
+
+Lactococcus TTAATAAGGCGCACGGTGGATGCCTTGGCACTAAGCCGATGAAGGACGTGACTACGACGATATTCTAGGGGGAGCAGTAAGACGCATGATCCCTAGGTCT
+ CCGAATGTTCACATAAGTAACGCAGAGACTGAAACATCTAAGTACCTGCGGAAGAGAAAGTAAAACGATTTCGTAAGTAGCGGCGAGCGAACGCGAAGAA
+ GGGCGGATATAGTCGAATAACCTGGGAAGTTAATCAAGAGGTAAAATCCCGTAACAATCCTGAGTGGGCTGGACACGCGAAATCCAGTTTGAATCCGGGA
+ GGACCATCTCCCAACCCTAAATACTCTTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAAAAGTTCGAGCCCAGGGTGAGAGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGTTATGATGCGGGTTAAGAAAGGAGCCGTAGGGACCGGTCTGA
+ ATAGGGCGTAGTATCATGATGTAGACCCAAACCAGTGACCTATCCATGAGCAGGTGAAGGTGTGTAAGACGCACTGGAGGCCCGAAAGGACACGTTGAAA
+ AGTGTTGGATGACTGTGATAGCGGAGAAATTCCAAACGAACTGGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCGTCGAAAGTTATTGAGGTA
+ GAGCACTGTTTGGGTGAGGTCTTGATAATCTCAGATAAACTCCGAATGCTAACATTCGGCAGTCAGACGCGAGTGCTAAGATCCGTAGTCGAAAGGGAAA
+ CAGCCCAGACCAACAGCTAAGTCCCAAAAAATGTTAAGTGGAAAGGATGTGGGTTGCACAGACAACTAGGATGTTACTCAGAAGCAGCTTTCAAAGAGTG
+ CGTAATAGCTCACTAGTCGAGTGACCCCCGAAAATGTCGGCTAAACATATTACCGAAGCTTTGGATTTATGGTAGGAGAGCGTTCTTAAGCGATAAGGTA
+ TACCGTGAGAGTGCTGGAGCGTTAAGAAGTGAGAATGCGGTATGAGTAGCGCAGATAAGTGAGAATCTTATCCACCGTAAGACTAAGGTTCCAGGGGAAG
+ CTCGTCCGCCCTGGGTTAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACTGGTGATATTCAGTACGGGACGCAGAGGCTAAGAGACCAGA
+ TGGCTGGCTCTCCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGTCAGGCGAGTAGCCTCAGGTGTCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCTGGAAGCGCCGCAGTGAATGGCCCAAAACTGTTTATCAAAAACACAGCCTCTGCTAAACCGCAAGGT
+ ATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGCTTAAGTATGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAATGATTTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTTTAGTACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCAGGAGCTTTACTGTAGTTTGATATTGAGTACCTGTAAGTCATGTACAGGATAGGTAGGAGC
+ CATTGAAATAGGGACGCTAGTTTCTATTGAGGCTTGTGGGATACTACCCTTGACTTATGGTACTCTAACCCGCATAGGGAGACAGTGTCTGACGGACAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCTCAAAGGTTGGCTCAGATTGGTTGGAAATCAATCGTAGAGTGTAAAGGTAAAAGCCAGCT
+ TGACTGCGAGAGCTACACTGAGCAGGTAGGAAACGGACTTAGTGATCCGGTGGTACCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCTGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGTAGGTAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACTTACGCTGGTGTACCAGTTGTTCCGCCAGGACAGGCTGGATAGCTATGTGGGAGGGATAAGCGCTGAAACATCTAAGTGCA
+ AGCCCCCTAAGAGAGATTACCCAGAGCCCAGAGAGATGATTGGTGATGGCTGG
+
+Tropheryma CATTTAAGGCAAATGGTGGATGCCTTGGTATCTAGCCGAAGAAGGACGTAGCAACTGCGATAAGCCTCGGGAAGCTGTAAGGAGCTTGATCCGAGGATTT
+ CCGAATGCTCATATAGGGGACGTGGGGAGTGAAACATCTCAGTACCCACGGAAGAGAAAGCAATGCGATTCCGTTAGTAGTGGCGAGCGAAACCGGAACA
+ GGCCGGATATAGGTGAATGATTTTGAACGTCAACCAAGAGGTGAAGTCCCGTATCAATCCCAAGTGCACGGGCCCCGTGAAATCCCGTGTGAATCTGTCA
+ AGACCACTTGATAAGCCTAAATACTACAGATAACCGATAGTGGAGAGTACCGTGAGGAAAGGTGAAAAGTCCGGAGTGAAAAGACTGAATCCATTTGCTT
+ ACAACCGTCGGAGCAGTTTGTGACGGGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGGATGTGTGGCGGATTAACTTGGTAGTCGTAGCGAGCGGTCTGA
+ ATAGGGCGTAGTCGCATGTCCTAGACCCAAGCGAGTGATCTATCCATGGCCAGCTGAAGCGAGGTAAGACCTCGTGGAGGGCCGAACACTTAGGTTGAAA
+ ACTGAGGGATGAGTGTGATCGGGGTGAAAGGCCAATCAAACTTGTTATAGCTGGTCTCTCCGAAATGCATTTAGGTGCAGCGTTGCGTTCTGCCGAGGTA
+ GAGCACTGGATGGCCAAGGCCCAGGTAACGTCAGCCAAACTCCGAATGCCGGAGCGCAGCAGTGAGGCGCGGGGGATAAGCTTCGTAGCCGAGAGGGAAA
+ CAACCCAGACCACCAATTAAGTCCCTAAGGGTGCTAAGTGGAAAGGATGTGAGTTGCACAGACAGCCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTCCCGACAATGTCGGCTAAGCACATCACCGAAATTGTGGCATTTGGGTAGGAGAGCGTCGTGTGCGAAAAAGCGG
+ CGATGTAATCGCCGTGGACGCTACACGAGTGAGAATGAGGCATGAGTAGCGAAGGCGGGTGAAAAACCCGCCCCCCGAATAACTAAGGTTCCAGGGCCAG
+ CTAATCCGCCCTGGGTAAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAAGGTAGCCAACCGGA
+ TGGCCGGTGGTTCTGACTAGAAAAGCCCCGTACCAAACCGACTCAGGTGGTTGGTAGAGAATACCAAGGGGTCGAGAGAATCGTGGTTAAGGAACTCGGC
+ AAAATGCCTCCGTAACTTCGGGAGAAGGAGGGCCTGTACGGTCACAGAAACCGTGGGAGGACTGTTTATTAAAAACATAGGCTGTGCCAAGTCGTAAGAC
+ ACGTATACAGACTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGACGGGTTTGGTCGGAATTTAAGCCCCGGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCAACTGTCTCAACCGCGAACTCGGCGAAATTGCACTACG
+ AGTGAAGATCTCGTTACGCGTAGCAGGACGGAAGACCCCGAGACCTTTACTATAGCTTGGTACTGGTACTTGGTGCGGTTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAGCGGGTGCGCCAGCACTCGTGGAGTCTTGTGAAATACCACTCTGATCGCCCCGGTGTCTAACTTAGATTCGAGGACAATGCCTGGTGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCCAAAAGGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTCGGTAATCAGGTGGCGAGTGTAAGTGCACAAGGGAGCT
+ TGACTGCGAGACTGACGGTGAGCAGGGACGAAAGGGGACTAGTGATCCGGCAGTGGCTGTGGAAGCGCTGTCGCTCAACGGATAAAGGTACCTCGGGATA
+ ACAGGTTGGTCCCTCCCAAGAGTCCATATCGACGGAGGGTTCGACACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGTAGCAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCCGCTACGCGCGTCGGAAATTGAGAGGACTGACCCTAGTA
+ CGAGAGGACCGGGTTGGACGAACTCTGGTGTACCAGTTGTCCTGCCAAGGCAGGCTGGTTTGCTACGTCGGACGGATAACCGCTGAAACATCTAAGCGGA
+ AACCGCCTAAGAGAGATTTCCAAGGCTCCCAGTAGAACACGGGTGATGGCTCG
+
+Buchnera at aphidicola CAAATAAGGTACATGGTGAATGCCTTGGCAGTCAGGCGAAGAAGGACGTGCTAACTGCGAAAAGCGACGGCAAGCTGATATAAGCCTTAACCGTCGATTT
+ CCGAATGTTAAAATAAGCAACCAAGGGACTGAAACATCTAAGTACCTTGGGAAAAGAAATCAACGAGATTCCCTTAGTAGTGGCGAGCGAAAAGGGAAAA
+ GCCCAACTATAGCAGAATGATTTGGAAATTCAGCGTACAGGTGAAGCCCTGTAGCAATGAAAAGTGAGCGGGACACGAGAAATCCTGTTTGAATATGGGG
+ GGACCATCCTCTAAGGCTAAATACTCTGACTGACCGATAGTGAATAGTACCGTAAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTGGAAGCATTATGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTGTACTCTGTAGCAGGTTAACAAGGGAGCCGAAGGGACCGGTCCTA
+ AATAGGCGAAGTTTCAGGGTACAGACCCAAACCGGTGATCTAGCCATGAGCAGTTGAAGGTTGGTAAAACCAACTGGAGGACCGAAGACTGATGTTGAAA
+ AATCACGGATGACTGTGCTAGGGGTGAAAGGCCAATCAAACCGGAGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGCATCTACGGGGTA
+ GAGCACTGTTTCGGTTAGGGCTCGCTAATCCGATGCAAACTCCGAATACCGTTGCACGGGAGACACACGCGGGTGCTAACGTTCGTTGTGGAAAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCAAAGCTAGTTAAGTGGAAACGATGTGGAAGGCATAAACAGCCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCAAGTCGGCCCGGAAGATGTCGGCTAAATTATGCACCGAAGCTGCGGCATATGGGTAGGGGAGCGTTCTGTACCAATAAGATG
+ TATTGTAAATATGTTGGAGGTATCAGAAGTGCGAATGTGACATGAGTAACGAAAGCAGGTGAAAAACCTGCTCGCCGAAAAACTAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGCCGACCCCTAAGGCGAGGCTGTACGTAGTCGATGGAAAACAGGTAATATTCTGTGCGGGACGAAGAGGTTAGGTTACCAGA
+ CGGCTGGAACTCCTTCCAAGAAAATCATCGTACCAAACCGACACAGGTAGTTGGTAGAGAATACTAAGGCGTTGAGAGAACCCAGGTGAAGGAACTAGGC
+ AAAATAGTGCCGTAACTTCGGGAGAAGGCACGCTAGTGATGTCGAAGATACCGCTGGTGAACTGTTTATTAAAAACACAGCCTGTGCAAACACGAAAGTG
+ AAGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATCGAAGGAGTAAAGTCCAGACTGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCTGGGACTCAGTGAAATTGAAATTGC
+ TGTGAAGATCAGTATATCCGCGGCAAGACGGAAGACCCCGGAACCTTTACTATAGCTTGACACTGAATTCTGAATTTTAACGTGTAGGATAGGTGGGAGG
+ CTATGAAGTTAAAACGCTAGTTTTAATGGAGCCAACTGAAATACCACCCTTTACAATTCGTGTTCTAACCTAGATGCAGAGACAGTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGTACGAAGATTGGCTAATCACGGTCGGACATCGTGAGGTTAGTGCAAAGGCATAAGCCAGTT
+ TGACTGTGAGCGTGATGCGGAGCAGGTGCGAAAGGGTCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGACGTTGGAAGTTGAGGGGGCTGCTTCTAGTA
+ GCAGAGGACCGAAGTGGACGCATACTGGTGTTCGGGTTGTCATGCCAATGCATGCCCGGTAGCTATATCGGAAAGATAAGTGCTGAACCATATAAGCACA
+ AACTTCCCAAGATAATCTTCCCAGGGACGTTGAAGACTACACGTAATGGCTAG
+
+Pirellula CTATTAAGGCGTATGGGGGATGTCTTGGTATCAAGGCGATGAAGGGCGTGGAAGCTGCGATAAGCCTGGGGGAGTTGCAAAGAACGTGATCCCGGGATTC
+ CTGAATGACTACATGTGCTACCCAGAGACTGAAACATCTCAGTACCTGGGGAAGAGAAAGAAAATCGATTTCGTCAGTAGCGGCGAGCGAAAGCGAAATA
+ GCCCGGGGCTAGTTGAACGACATGGAAAGTCGGCCCAGAGGTGAAGCCCGGTAACAAGCCTGAGTGGTTCAGGCACGTGAAACCTGGACTGAATCCACGG
+ GGACCATCCCGTAAGGCTAAATACTCCTGATAACCGATAGCGAACAGTATGGCGATGAAAGATGAGAAGACCTGAGGTATGTGACTGAAACCATACGCTT
+ ACAACGGTCGGAGCCCAGGGTGACGGGTGCCTTTTGCATAATGATCCGGCGAGTTACGGTCTGCGGCAGGTTAAATACGAAGCCAGAGGGACCGGTCTGA
+ ATAGGGCGTAGTCGTAGGCTGTAGACGCAAACCAGTGATCTACCCATGAGCAGTTGAAGCGCGGTTATACCGCGTGGAGGACCGAACACTTGGGTTGAAA
+ ACCGAGGGATGACTGTGGGAGGAGTGAAAGTCTAATCAAACTTGAGATATCTCGTCTCTCCGAAATAGCTTTAGGGCTAGCCTTGAGTACCACCGGGGTA
+ GAGAACTGAATCGATTGGCCCTCGGGATGTCGGACCAAACTCCGAATACCGGGACTCAGGAGTCAGTCACGAGGGATAAGCTTCGTGGTCGAGAGGGAAA
+ CAACCCAGACCGTCTGTTAAGTCCCGAAGAACGCTCAGTCATAAGGAGGTGAATTACTGTGACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAAAGTG
+ CGTAACAGCTTACTGGTCGAGTAATTCCCGATAATGACGGGTAAGCGTCTCACCGAAGCAGCGGACAAGTGGTAGGAGAGCGCCGATAGCAATAGAGCCG
+ TACCGAAAGAGCGGTGTTGGGCTATCGGGTGATTATGCGGAATGAGTAACGAAAACAGGTGAGAATCCTGTTCGCCGAATACCTAAGGTTCCTGGGGAAG
+ CAATTCCGCCCAGGGTTAGCCGGTGCCTTAGTCGAGGCCGAACGTAGACGATGGATAGCAGGTAATATTCTGCGCGGGACGGCGCCGAAAGGTGACGGGG
+ TGGCCCGCATCACGTCCAAGAAAAGCACCGTACTAAACTGACACAGGTAGGTGGTCGAGTAGACCAAGGCGTCGGGAGAACAGTGGTTAAGGAACTCTGC
+ AAAATGACCCCGTAAGTTCGCGATAAGGGGTGCCCCCAGGGCCACAGAAAATGGCTCTGGACTGTTTATCAAAAACACAGGCCCTGCTAACTCGCAAGAG
+ ATGTATAGGGTCTGACGCCTGCCCGGTGCCGGTAGGTTAAGGAAGAGGGTCAAGTCGCGACCGAAGCCCCGGTAAACGGCGGCCGTAACTATGACGGTCC
+ TAAGGTAGCGAAGTTCCTTGTCGGGTAAGTTCCGACCTGCATGAAAGGCGTAACGACTGGAGCACTGTCTCAATCACTGACCCGGTGAAATTGTAGTTGT
+ GGTGAAGATCCACATACCCGCAGTTAGACGGAAGACCCCGGAACCTTTACTGTAGGCTGATATTGGTCTGAGATATGTTCTGTGTAGGATAGGTGGGAGG
+ CTTTGATCTCGGCGCGCCAGCGTCGGAGGAGCCTCCTGAAATACCACCCTGAATATGTTTAGCTCTAACCCTGATCAGGGAACAGTGTCAGTTGGGCAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGTGCAATGGTACCCTCAGCCTGGTTGGCCATCAGGCAAAGAGCGCAATGGTAAAAGGGTGCT
+ TGACTGCGAGACTTATCGTGAGCAGGTACGAAAGGGTCATAGTGATCCGGTAGTCCCGATGGAAGGGCTATCGCTCATCAGATAAAGGTACTCCGGGATA
+ ACAGGCTTATCGCATCCGAGCGTCCATAGCGGCGATGCGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGGTGAAGAAGCTCCAAGGGTTCGCTG
+ TTCGCCGATAAAGTGGTACGTGAGCTGGGTTCAGACCGTGTGAGACAGGTCGGTCCCTATCTGCTGTGGGCGTACGAATTTGAGGAGGTCTTCTTTAGTA
+ CGAGAGGATTTGGAAGGACGACCTCTGGTGTCCCAGTTGTCATGCCAGTGCAGGCTGGATAGCTATGGCGGAAGGATAAACGCTGAAACATCTAAGCGTA
+ AGCCCCTCAAGATAGAATTCGTAGTCCCCTGGAAGACGACAGGTGATGGCTGG
+
+Mycobacterium at smegma TGTTTAAGGCGCATGGTGGATGCCTTGGCACTGAGCCGATGAAGGACGTAGGAGCTGCGATAAGCCTCGGGGAGCTGCAACGAGCGTGATCCGAGGATGT
+ CCGAATGCCAATATGGGGGACGCGGGGAGTGAAACATCTCAGTACCCGTGGAAGAGAAAACAAAGTGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAGGA
+ GGCTGGAGGTAGCGGAAAGGCTTGGGATGCCTGCCTAGAGGTGAAGCCCGGTAGTAAACCCGAGTGCAGCGGGCCCGTGGAATCTGCTGTGAATCTGCCG
+ GGACCACCCGGTAAGCCTGAATACTTCCAGTGACCGATAGCGGATAGTACCGTGAGGAATGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCGTGCGCTT
+ ACAACCGTCAGAGCCCTGGGTGATGGGTGCCTTTTGAAGAATGAGCCTGCGAGTCAGGACATGTCGCGGGTTAACGGGGTAGCCGCAGCGAGCGGTCTGA
+ ATAGGGCGTAGTGGTGTGTTCTGGACCCAAGCGAGTGATCTACCCATGGCCAGGTGAAGCGCGGTAAGACCGCGTGGAGGCCCGAACACTTAGGTTGAAG
+ ACTGAGGGATGAGTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCGCATTCTGCCGAGGTA
+ GAGCACTGGATGGCCGAGGCCCCGGTAACGTCAGCCAAACTCCGAATGCCGGAGTGCGGCAGTGAGACGCGGGGGATAAGCTCCGTCGTCGAGAGGGAAA
+ CAGCCCAGATCGCCGGCTAAGCCCCTAAGGGTGCTAAGTGGAAAGGATGTCAGTCGCGAAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTGCCGATAATGTCGGCTAAGCACACCGCCGAAGCCGCGGCAGTTGGGTAGGGGAGCGTCCTGCACCGGTAAGCCG
+ CCGAGTGACGGTGGTGGAGGGTGTGGGAGTGAGAATGAGGCATGAGTAGCGAAGGCAAGTGAGAACCTTGCCCGCCGAAAGACCAAGGTTCCTGGGCCAG
+ CCAGTCCGCCCAGGGTGAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAAGGTAGCCGTCCGGG
+ TGGCCGGCGGTTCTGCCGAGAAAAGCCCCGTACCAAACCAACACAGGTGGTCGGTAGAGAATACTAAGGCGACGAGTGAACTATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGACCCATTGGGTGGCACAAACCGTGAGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGTCGCAAGAC
+ ATGTATACGGACTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGACCCGTTTTGGGAGAATTTAAGCCCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCTCAACTGTCTCAACCATAGACTCGGCGAAATTGCACTACG
+ AGTAAAGATCTCGTTACGCGCGGCAGGACGAAAGACCCCGGGACCTTCACTACAACTTGGTATTGGTGCTCGATACGGTTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAGCTCACACGCCACTGTGGGTGGAGTCTTGTGAAATACCACTCTGATCGTATTGGCCTCTAACCTCGATTCAGGGACAGTGCCTGGTGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTCCAATGTAACGGAGGCGCCCAAAGGTTCCCTCAACCTGGACGGCAATCAGGTGTTGAGTGTAAGTGCACAAGGGAGCT
+ TGACTGCGAGACGGACAGTGAGCAGGGACGAAAGGGGACTAGTGATCCGGCACCTCTGGTGGAAGGGGTGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCTCTATCCGCCGCGCGCGTCAGAAGTTGAGGAAACTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTATACCAGTTGTCCCACCAGGGCAGGCTGGATAGCCACGTCGGCAGGATAACCGCTGAAACATCTAAGCGGA
+ AACCTTTCAAGACAGGCTTCTCAGGCCCCCCGCAGACCACGGATGATGACCAG
+
+Leucothrix TGACTAAGGTATGTGGTGGATGCCTAGGCGATAAGGCGATGAAGGACGTAGTAACTGCGAAAAGCCCCGGTGAGCTGTAAAAAGCTGGACCCGAGGATGT
+ CCGAATGTCGACATGAGCTACCCGGAGACTGAAACATCTAAGTACCCGGGGAACAGAAATCAACGAGATTCCCTTAGTAGCGGCGAGCGAACGGGGACCA
+ GCCCCGGGATAAGAGAACACGTTGGGAACGTGACCGAGTGGTGAAGTCCCGTACTAATGAAGAGTGGTCGGGACACGTGATATCCTGATTGAACATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTTATCGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCGCATACGT
+ ACAACAGTGGGAGCCTTGGGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTACTCATCGTGGCAGCTTAAGTAGGTAGGCGTAGGGACCGGTCTTA
+ ATAGGGCGAAGTCGCGGTCAGTAGACCCAAACCAGCGATCTATCCATGGCCAGTTGAAGGTGGGTAACACCTACTGGAGGACCGAACACGTATGTTGAAA
+ AATGCGGGATGAGTGTGATCGGAGTGAAAGGCTAATCAAGCTCGAGATAGCTGGTCTCCTCGAAATCTATTTAGGTAGAGCCTCATGTACTCACGGGGTA
+ GAGCACTGTTATGGCTAGGGGGCCCTAACCCATTGCAAACTCCGAATACCGTTACATGGGAGTCACACGCGGGTGCTAACGTCCGTCGTGGAAAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCAAAATCAGCTCAGTGGAAACGATGTGGAAGGCACAGACAGCCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCGAGTCGGCCCGGAAGATTTCGGCTAAGCTGTATACCGAAGCTGCGGAATTTTGGTAGAGGAGCGTTCTGTACCAATAAGGTG
+ AATCGTAAGTTTGCTGGAGGTATCAGAAGTGCGAATGTGACATAAGTAACGAAGACGGGTGAAAAACCCGTCCGCCGAAAATCCAAGGTTCCTGCGCAAG
+ TTAATCGGCGCAGGGTTAGTCGGCCCCTAAGGCGAGGCAGAACGTAGTCGATGGGAAACAGGTAATATTCTGTACGTGACGGAGAGGCTAGGCTAAACAT
+ TGGTGTAAGTCCCTTCCAGGAAAAACACCGTACTAAACGGACACACGTGGATGGATGAGAATTCCAAGGCGTTGAGAGAACTCTGGTGAAGGAACTAGGC
+ AAAATAGCACCGTAACTTCGGGAGAAGGTGCGCCCCATGGGCCGCAGAGACCGGTGGTGGACTGTTTATCAAAAACACAGCCTCTGCTAACGCGAAAGCG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTCGGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACGGCCACACTGTCTCCACCAGAGGCTCAGTGAAATTGAAATCGC
+ AGTTAAGATCTGCGTACCCGCGGCTAGACGGAAGACCCCGGCACCTTTACTACAGCTTTGCACTGAACATCGGGCCTACTTGTGTAGGATAGCTGGGAGG
+ CTTTGAAACCGGGACGCTAGTTCCGGTGGAGCCATCTGAAATACCAGCCTGGTAGTTCTGTGTTCTAACCACGATTTTGGGACAGTGTATGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCTAAAGCGTAACGGAGGAGCGCGAAGGTTCACTAATCATGGTCGGAAATCATGAGGTTTGTGCAAAGGCATAAGTGAGCT
+ TGACTGCGAGACAGACAGTGAGCAGGTACGAAAGGGTCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGCGGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGTTAGAATTTGAGGAAACTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGAACTCTGGTGTACCGGTTGTCACGCCAGTGCAAGCCGGGTAGCTAAGTCGGCAGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCCTTCAAGAGAGTATGCTCAGGGCCGTTGAAGACTACACGTGATGGCACC
+
+Streptococcus TTAATAAGGCGCACGGTGGATGCCTTGGCACTAAGCCGATGAAGGACGTGACTACGACGAAATGCTTTGGGGAGTTGTAAGAAACATGATCCAGAGATGT
+ CCGAATGCTCGTTAAGGAAACGCAGTGACTGAAACATCTAAGTAGCTGCGGAAGAGAAAGCAAAGCGATTGCCTTAGTAGCGGCGAGCGAAGCGGCAAGA
+ GGGCGGATATAGAAGAATTACCTGGGAAGTAAGCCAAGAAGTAAAGCCTCGTATCAATCCTGAGTCGGCGAGACACGAGAAATCTCGTTGGAATCTGGGA
+ GGACCATCTCCCAACCCTAAATACTCCTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAAAAGTTCGAGCCCAGGGTGAGAGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGATATGATGCGGGTTAAGAAAGGAGCCGTAGGGACCGGTCTTA
+ ATAGGGCGTAGTATCATGTCGTAGACCCAAACCTGTGACCTACCCATGAGCAGGTGAAGGTGAGTAAAACTCACTGGAGGCCCGAAAGGGCACGTTGAAA
+ AGTGCTGGATGACTGTGGTAGCGGAGAAATTCCAAACGAACTTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCGTCGATGTCTCTTGAGGTA
+ GAGCACTGTTTGATTGAGGTCTCGATAATATCAGATAAACTCCGAATGCCAAATATCGGCAGTCAGACGCGAGTGCTAAGATCCGTAGTCGAAAGGGAAA
+ CAGCCCAGACCACCAGCTAAGTCCCAAAAAATGTTAAGTGGAAAGGATGTGGGTTGCACAGACAACTAGGATGTTACTTAGAAGCAGCTTTCAAAGAGTG
+ CGTAATAGCTCACTAGTCGAGTGACCCCCGAAAATGTCGGCTAAACATATTACCGAAGCTGTGGATTTATGGTAGGAGAGCGTTCTATGGTGATAAGGTG
+ TACCGTGAGAGCGCTGGAACGCATAGAAGTGAGAATGCGGTATGAGTAGCGAAGACAGGTGAGAATCCTGTCCACCGTATGACTAAGGTTCCAGGGGAAG
+ CTCGTCCTCCCTGGGTTAGTCGGGACCTAAGGAGAGACCGAATGTATCCGATGGACAACAGGTGATATTCTGTACGGGACGCAGAGGCTAACTAACGTGT
+ TGGCACGTAGTCCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGTCAGGCGAGTAGCCTCAGGTGGCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGGCCCCGTAACTTCGGGAGAAGGGGCGCTGGTAGCGCCGCAGTGAATGGCCCAAAACTGTTTATCAAAAACACAGCCTCTGCTAAATCGTAAGAT
+ ATGTATAGGGGGTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGCGCTTTAGTGTGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAATGATTTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTTTAGTACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCAGGAGCTTTACTGCAGTTTGATATTGAGTATGTGTACCACATGTACAGGATAGGTAGGAGC
+ CTAAGAAGCCGGGACGCTAGTTTCGGTGGAGGCTTGTGGGATACTACCCTTGTGTTATGGTACTCTAACCCAGATTCGGAGACAGTGTCTGACGGGCAGT
+ TTGACTGGGGCGGTTGCCTCCTAAAAGGTAACGGAGGCGCCCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGCAGAGTGTAAAGGTATAAGGGAGCT
+ TGACTGCGAGAGCTACACTGAGCAGGGACGAAAGGGGCTTAGTGATCCGGTGGTTCCAATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCTGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGTAGGAAATTGAGAGGACTGCTCCTAGTA
+ CGAGAGGACCAGAGTGGACTTACGCTGGTGTACCAGTTGTCTTGCCAAAGCACGCTGGGTAGCTATGTGGGAGGGATAAACGCTGAAACATCTAAGTGTA
+ AGCCCCCTAAGAGAGATTTCCCAGAGCCCTGAGAGATGATAGGTGATGGTTAG
+
+Clostridium at botulinu CTACAAAGGCGCATGGTGAATGCCTTGGCATCAAGCCGATGAAGGACGCGATAACTGCGATAAGCTTCGGGTAGACGCACAAGTCAGGATCCGAAGATTT
+ CCGAATGTCGACATGAGTAACCCAGGGACTGAAACATCTAAGTACCTGGGGAAGAGAAAGAAAATCGGTTTTCTTAGTAGCGGCGAGCGAAAGGGAAAGA
+ GCCCGGAGTTAACCGAACCAACTGGAAATTGGACCTAGGGGTAAAGTCCTGTAGTAAACCAGAGTCCACGAGACACGTGAAACCTTGTGGGAAGCAGGGA
+ GGACCACCTCCCAAGGCTAAATACTACTGATGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGACTGAAACCATGTGCCT
+ ACAACGATCAAAGCACAGTGTGATGAGTGCTTTTTGTAGAACGAGCCAACGAGTTACGGTATGTAGCAGGTTAAGAAAGGAGCCGAAGGGACCGGTCTTA
+ ATAGGGCGTAGTTGCATGCTGTAGACCCAAACCGGTGACCTATCCATGGCCAGTTGAAGCGAGGTAAAACCTCGTGGAGGACCGAAAGTTGCTGTTGAAA
+ AAGCAGGGATGAGTGTGATAGCGGAGAAATTCCAATCGAACTCGATATAGCTGGTCTCCTCGAAATAGCTTTAGGGCTAGCGTCGGAGTGTACTGGGGTA
+ GAGCACTGAATGGGCTAGGGCTGGCTAAACCTTATCAAACTCCGAATACCAGATTCCGGCAGTCAGACGCGAAAGATAAGTTCCGTAGTCAAAAGGGAAA
+ CAGCCCAGATCGTCAGCTAAGTCCCAAAGGAAGTTAAGTGGAAAGGATGTGGATTTCTAAGACAACTAGGATGTTGCTTAGAAGCAGCCTTAAAAGAGTG
+ CGTAATAGCTCACTAGTCAAGAGATCCCCGAAAATGTCGGCTAAACTTAACACCGAAGCTACGGGTATGCGGTAGAGGAACGTCGTAATGGGCTAAGTCG
+ TACCATAAGAGCGGTGGACTGATTACGAGTGAGAATGTGGCATTAGTAGCGAATGTGGGTGAGAATCCCACAGGCCGAATACCTAAGGTTCCTCAGGAAG
+ TTCGTCCGCTGAGGGTTAGTCGGGACCTAAGCTGAGGCCGAACGTAAGCGATGGACAATCGGTGATATTCGATACGTGACGGAGAGGATAGGATGCTAGT
+ TGGCTAGATCTCCTTCCAAGAAAAGCCCCGTACCAAACCGACACAGGTAGGTAGGAGAGAATCCTAAGGCCGCGGAAGAATTGCAGTTAAGGAACTAGGC
+ AAATTGACCCCGTAACTTCGTGAGAAGGGGTGCCTGAGGAGCCGCAGAGAATGGCACAAAACTGTTTAACAAAAACACAGGCTCTGCTAAAGCGAAAGCT
+ ATGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGGGGAACACTTAAGTGTGAACTTAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTGGCGAAATTCCTTGTCAGGTAAGTTCTGACCCGCACGAATGGCGTAATGACTTGTGCACTGTCTCAACTGCAAATCCGGCGAAGTTGTAGTGCG
+ AGTGAAGATCTCGCTACCCGCGATTGGACGGAAGACCCCGAGAGCTTTACTGTAGCTTAGCATTGAATTTCGGTATTGTCTGTACAGGATAGGTGGGAGA
+ CTGGGAAATCAGAGCGTCAGCTTTGATGGAGTCTCCTGGGATACCACCCTGATAGTACTGAATTCTAACTGGAATGACAGGACATTGTTAGGTGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAAGTAACGGAGGCGCCCAAAGGTTCCCTCAGAACGGTCGGAAATCGTTCGTAGAGTGCAAAGGCATAAGGGAGCC
+ TGACTGCGAGACCTACAGTGAGCAGGGACGAAAGGGGCTTAGTGATCCGGTGGTACCTGTGGGAGGGCCATCGCTCAACGGATAAAGCTACCTCGGGATA
+ ACAGGCTGATCTCCCCCAAGAGTTCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGAAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAAATTGAGAAGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACCGACTATGGTGTACCAGTTGTTTCGCCAGAACAAGCTGGGTAGCTAAGTGGGCGGGATAAACGCTGAAACATCTAAGCGTA
+ AGCCTCTTAAGAGAGATTTCCCAGACCCCTTGAAGACTACAGGTGATGGTCAG
+
+Xylella CGAATAAGGCACATGGTGGATGCCTTGGCGGTCAGGCGATGAAGGACGTGGTAGCTGCGAAAAGTGTCGGGGAGCTGGCAAAAGCTTGATCCGGCAATAT
+ CCGAATGTCTTCATGAGCGACCTGGTGACTGAAATATCTAAGTAACCAGGGAAAAGAAATCAACGAGATTCCCTGAGTAGTGACGAGCGAACGGGGATTA
+ GCCCTAATTTAGGAAAACAATCTGGAAAGTTGGCCTAGGGGTGAAGCCCTGTACCAAGGATGAGTGGACGGGGCACGTGAAACCTTGTCTGAATATGGGG
+ GGTCCATCCTCCAAGGCTAAATACTCTGACCGACCGATAGTGAATAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCATGTGCGT
+ ACAACAGTAGGAGCCCAAGGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTACTGTTCGTGGCGGCTTAACTAGGGAGGCGAAGGGACCGGTCTGA
+ TAAGGGCGTAGTCGCGGGCAGTAGACCCAAACCGGTGATCTAGTCATGTCCAGGTGAAGGTGCTTAACAGGTACTGGAGGCCCGAACACTCCCGTTGCAA
+ AGGTAGGGATGAGCGTATTAGGAGTGAAAAGCTAATCGAACCCGAGATAGCTGGTCTCCTCGAAAGCTATTTAGGTAGCGCCTCATATCCTCTCGGGGTA
+ GAGCACTGTTATGGCTAGGGTTGACTGAACCATTGCAAACTCCGAATACCGAGATATGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAAAGGGAAA
+ CAACCCAGACCCACAGCTAAGTCCCAAATCTAGCTAAGTGGAAACGATGTGAAAGGCATAGACAGCCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCGAGTCGGTCCGGAAGATTTCGGCTAAGCTATGAACCGAAGCTTGGGGTTTGCGGTAGAGGAGCGTTCCGTACCTGTAAGGTG
+ AGTTGAGAGCTTGCTGGAGGTATCGGAAGTGCGAATGTGACATGAGTAACGAATATGGGTGAAAAACCCATACGCCGAAAGCCTAAGGTTCCTGCGCAAG
+ TTAATCGGCGCAGGGTTAGTCGGCCCCTAAGGCGAGGGCGAACGTAGTCGATGGGAAGCAGGTAATATTCTGCACGGGACGGAGAGGCTAGGTGTCCGGT
+ TGGCCGGCACTCCTTCCAGGAAAAGCACCGTACCAAACCGACACAGGTAGGTGGATGAGAATTCTCAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AACATGGCACCGTAACTTCGGGAGAAGGTGCACCCTGTGGGTCGCAGAAACCGGCCGTGGACTGTTTATCAAAAACACAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCTGGAAGGTTAATTGATGGGGTAAAGTCTTGATCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACAGCGGCGCTGTCTCCACCCGAGACTCAGTGAAATTGAAATCGC
+ TGTGAAGATCAGCGTTCCCGTGGCAAGACGGAAGACCCCGGAACCTTTACTATAGCTTTACACTGAACGTTGAGTTCGTCTGTGTAGGATAGGTGGGAGG
+ CTATGAAACCGTGACGCTAGTTGTGGTGGAGCCTCCTGAAATACCACCCTGTCGTGCTTGCGTTCTAACCTAGATTCAGGGACAGTGTATGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGAGTAACGGAGGAGCACGAAGGTACGCTCAGCGCGGTCGGACATCGCGCACTGTGTGCAAAGGCATAAGCGTGCT
+ TGACTGCGAGATCGACGATAAGCAGGTACGAAAGGGTCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGTAGTCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCATGGGCGTTGGAGATTGAGAGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGAACTCTGGTGTTCCGGTTGTCACGCCAGTGCATGCCGGGTAGCTATGTCGGAGCGATAACCGCTGAAACATCTAAGCGGA
+ AGCGCCCTAAGAGAGATCTCCCAGGAACCATGTAGACTACTGGTGATGGTCAG
+
+Agrobacterium at vitis TGCGTAAGGCATTTGGTGGATGCCTTGGCATGCAGGCGATGAAGGACGTGATACCTGCGATAAGCCGTGGGGAGCTGCGAAGAGCTTGATCCATGGATTT
+ CCGAATGTCTACATGAGCGACTCGGGGACTGAAACATCTAAGTACCCGAGGAAAGGACATCAACGAGACTCCGTAAGTAGTGGCGAGCGAACACGGACCA
+ GGCCGCATAAAGCGGAACAAGTTGGAAACTTGGCCTAGTGGTGAAGCCCCGTAGCAGACCTGAGTGGGCGGGACACGTGAAATCCTGTTCGAACATGGGG
+ AGACCACTCTCCAAGCCTAAGTACTCTGCATGACCGATAGCGAAAAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGGATGCCT
+ ACAACAGTAGGAGGGCAGCCTGACTGGTACCTTTTGTATAATGGGTCAACGACTTAGTGTAACTAGCAGCTTAAGGTGGTAGGCGCAGCGAGCGGTGTTA
+ ATAGCGCGGAGTTAGTTGCATTAGACCCAAACCAGTGATCTAGCCATGAGCAGTTGAAGGTTGGTAACACCAACTGGAGGACCGAACGCATCTGTTGCAA
+ TAGATGGGATGACTGTGTTAGGGGTGAAAGGCCAATCAAACTCGAAATAGCTGGTCTCCGCGAAAACTATTTAGGTAGTGCGTCGATTACCTCAGGGGTA
+ GAGCACTGGATGGGCTAGGGACCTCTAATCCTAACCAAACTCCGAATACCTGTAATCGGCAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGCAA
+ CAACCCTGACCTCCAGCTAAGTCCCCAAGCTGGCTAAGTGGAAAGGATGTAGGATCCCAAAACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGGGTCTTCCGAAAATGTCGGCTAAGCCATGCACCGAAGCTGAGGATTAGTGGTAGCGGAGCGTTCCGTACCTGTAAGGGC
+ AGTCGTGAACATCCTGGAGGTATCGGAAGTGCGAATGTGACATGAGTAACGAAAGGGGGTGAGAGACCCCCTCGCCGAAAGACCAAGGTTCCTGCTTAAG
+ TTAATCTGAGCAGGGTTAGCCGGCCCCTAAGGCGAGGCAGAACGTAGTCGATGGGAACCACGTAATATTGTGGGCGTGACGGATCACACAATTGTCAGTA
+ CTGATTGCAGTGGTTCCAGGAAATACACCGTACCAAACCGACACAGGTGGTCGGTAGAGTATACCAAGGCGTTGAGAGAACTATGTTGAAGGAACTCGGC
+ AAATTGCACGCGTAACTTCGGAAGAAGCGTGACCCCCAAGGTGGCACAGACCGGGGGAGGACTGTTTATCAAAAACACAGGCTCTGCGAAGTCGCAAGAC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGAGGTCAAGTTTGAATCGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCGCTGTCTCCAACATAGACTCAGTGAAATTGAATTCCC
+ CGTGAAGATCGGGGTTCCTGCGGTCAGACGGAAGACCCCGGCACCTTTACTATAGCTTTACACTGGCATTCGTGTCGGCATGTGTAGGATAGGTGGTAGG
+ CTTTGAAGCTTGGACGCCAGTTCGAGTGGAGCCTCCTGAAATACCACCCTTATCGTCATGATGTCTAACCGCGATTCCGGGACAGTGTATGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCGAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCATAAGCCCGCC
+ TGACTGCGAGACTGACAGTGAGCAGAGACGAAAGGGTCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACGCCGGGATA
+ ACAGGCTGATGACCCCCAAGAGTCCATATCGACGGGGTGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTTTGCTG
+ TTCGCCAATAAAGCGGTACGTGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGTGTAGGAATTTGACAGGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACATATTCTGGTGGACCTGTTGTCGTGCCAACGCAAGCAGGGTAGCTATATTGGATGGATAACCGCTGAAGCATCTAAGCGGA
+ AACCACCTAAAAGAGTATTCCCAGAGCCGTGGAAGACGACACGTGATGGACGG
+
+Leptospira TAAGAAAGGCGTACGGGGGATGCCCGGGCATCAACGCGATGAAGGACGTGGCTTCTGCGATAAGCAACGGGGAGTTGTAAGAAGCATGATCCGTTGATTT
+ CCGAATGCGCAAACCGGCAAGTCGGGGATTGAAACATCTTAGTACCCGGATAAAAGAAAATAAGATGATTCCGTCAGTAGCGGTGAGCGAACGCGGAAGA
+ GCCTGGAATTAGCAGAACGGTATGGAAAGCCGACCTAGAGGTGAAGTCCTGTAGCAAACCTGAGTCCACGGAACACGTGTAATTCAGTGGGAATCTGCGG
+ GGACCACCCCGTAAGGCTAAACAGTACTGATGACCGATAGAGAAAAGTACCGCGAGGAAAGGTGAAAAGTGGGGAGTGAAAAGACTGAAACCGTATGCTT
+ ACAAGTATCAGAGCCTTGGGTGATGGGTGCCTTTTGTAGAATGAGCCGGCGAGTTATTTTACGTTGCAGCTTAAGGACGTAGGCGAAGCGAGCGGTCTGA
+ ATAGGGCGAAGTAGCGTGGAATAGACCCAAGCCGTCGAGCTATCCATGTCCAGTTGAAGGTGGGTAAAACTCACTGGAGGACCGAACTTTTTCGTTGAAA
+ AGAATGGGATGAGTGTGATAGGGGTGAAAGGCCTATCAAGGCAGCGATAGCTGGTCTCTCCGAAATAGGTTTAGGCCTAGCGTCAGTTAGTTGCGGGGTA
+ GAGCTCTGAAAGGACTAGGGCCCGCTAAACCCTATCAAACTTCGAATACCGTTCACTGGCAGTCAGACACGGGGGATAAGCTCCGTGGTCAAAAGGGAAA
+ CAGCCCAGACCGTCGTTTAAGCCCCAAAGTATGCTAAGTGGAAAGGATGTGGGGCGCATATACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTGCTCCCCGAAAATGTTCGACAAGCATGGCGCCGAAGGCACGGATTAGTGGTAGGAGAGCGTTCTTTCCCGTTAAGGCG
+ TACCGTAAGAGCGCTGGAGGAGTAAGAAATGAAGATGTGGCATGAGTAGCGTAGGGGAGTGAGATTCTTCCCCACCGATAGCCTAAGGTTCCCCGGGAAG
+ CCAATCCGCCGGGGGTTAGTCGGCCCCTAAGACGAGGCTAGACGTAGTCGATGGGAAGCAGGTCATATTCTGCACGTGACGCAGAGGATAGTTAGGCGGT
+ TGGTTGCTTTCCCTGCCAAGAAATACACCGTACCAAACCGACACAGGTAGGCAGTAGAGAATACTAAGGTGTCGAGATAACTCTCGTTAAGGAACTCGGC
+ AAATTACTCCTGTAACTTCGGGATAAGGGAGACCGGTGGAGTGGCACAAAAAGGGGGAGGACTGTTTACCAAAAACACAGGCTCTGCCAAATCGGAAGAT
+ AAGTATAGGGTCTGACACCTGCCCGGTGCTGGAAGGTCAAGAGGACGGGTCAAGTCGGAATTTAAGCCCCAGTAAACGGCGGCCGTAACTATGACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGTGTAACGACTTCCCCACTGTCTCAACGAGAGTCTCGGCGAAATTGTAGTACC
+ CGTGAAGATCGGGTTACCTGCGATAGGACGGAAGACCCCGGAACCTTTACTGTAACCTGGCATTGAACTTTGGTCCTGTATGTGTAGGATAGGTGGGAGG
+ CTATGAAATCTGGACGCCAGTCTGGATGGAGCCTCGTGAAATACCACCCTTACTTGACCCAGTTCTAACCGAACATTCGAGACAATGTCAGGCGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGCGCGGACGGAAATCGCGCCAAGAGTGTAAAGGCATAAGGGAGCT
+ TAACTGTGAGACAGACAGTGAGCAGGTACGAAAGGGGCTTAGTGATCCGGTGGTTCTGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATCGCGTCCAAGAGTCCATATCGACGACGCGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGAAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCATCGCAGGCGTTGGAGATTGACGGAACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACGAACTCTGGTGTATCAGTTGTTTCGCCAGAACACGCTGAGTAGCTATGTCGGAGGGATAACCGCTGAAACATATAAGTGGA
+ AACCCTCTAAGAAAGATCTCCCAGACCCCAAGAAGATGACTGGTGATGGTCAC
+
+Citrobacter CGACTAAGGTACACGGTGGATGCCCTGGCAGTCAGGCGATGAAGGACGTGCTAACTGCGATAAGCGTCGGTAAGGTGATATAACCTTTAACCGGCGATTT
+ CCGAATGTCAACATGAGCGACCGGGGGACTGAAACATCTAAGTACCCCGGGAAAAGAAATCAACGAGATTCCCCCAGTAGCGGCGAGCGAACGGGGAGCA
+ GCCCAGTGTTAGTGGAACGGTCTGGAAATCCGACGTACAGGTGAAGTCCCGTAACAAAGAAGAGTGGGCGGGACACGTGGTATCCTGTCTGAATATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGACTGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGACTGAAACCGTGTACGT
+ ACAACAGTGGGAGCCTTAGGTGACTGGTACCTTTTGTATAATGGGTCAGCGACTTATATTCTGTAGCAGGTTAACAAGGGAGCCGAAGGGACCGGTCTTA
+ ACTGGGCGAAGTTGCAGGGTATAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTTGGTAACACTAACTGGAGGACCGAAGACTAATGTTGAAA
+ AATTACGGATGACTGTGCTGGGGGTGAAAGGCCAATCAAACCGGAGATAGCTGGTCTCCCCGAAAGCTATTTAGGTAGCGCCTCGTGCATCTTCGGGGTA
+ GAGCACTGTTTCGGCTAGGGTTCACTAACCCGATGCAAACTGCGAATACCGATGCACGGGAGACACACGCGGGTGCTAACGTCCGTCGTGAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCAAAGCCAGTTAAGTGGAAACGATGTGGAAGGCACAGACAGCCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGGTCGAGTCGGCCCGGAAGATGTCGGCTAAACTGTGCACCGAAGCTGCGGCATATGGGTAGGGGAGCGTTCTGTACCGTTAAGGTG
+ TGCTGTGAGCATGCTGGAGGTATCAGAAGTGCGAATGTGACATAAGTAACGAATGCGGGTGAAAAACCCGCACGCCGGAAGACCAAGGTTCCTGTCCAAG
+ TTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAACGTAGTCGATGGGAAACAGGTAATATTCTGTACGGGACGGAGAGGCTATGTTACCGGA
+ CGGCCGGAACACCTTCCAGGAAAAGCATCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGTTGAGAGAACTCGGGTGAAGGAACTAGGC
+ AAAATGGTGCCGTAACTTCGGGAGAAGGCACGCTGATTACGTCGAAGATACCGCTGGTGAACTGTTTATTAAAAACACAGCCTGTGCAAACACGAAAGTG
+ ACGTATACGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAATTGATGGGGTTAAGTCTTGATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAATGATGGCCAGGCTGTCTCCACCCGAGACTCAGTGAAATTGAACTCGC
+ TGTGAAGATCAGTGTACCCGCGGCAAGACGGAAGACCCCGGAACCTTTACTATAGCTTGACACTGAACACTGGTCCTTGATGTGTAGGATAGGTGGGAGG
+ CTTTGAAGTGTGGACGCCAGTCTGCATGGAGCCACCTGAAATACCACCCTTTAATGGCTGTGTTCTAACGTGGACTTGCGGACAGTGTCTGGTGGGTAGT
+ TTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGCACGAAGGTTAGCTAATCCTGGTCGGACATCAGGAGGTTAGTGCAAAGGCATAAGCTAGCT
+ TGACTGCGAGAGTGACGCTGAGCAGGTGCGAAAGGGTCTTAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCCGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGAAGTAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGTGGTACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTGCCGTGGGCGCTGGAGATTGAGGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGCATACTGGTGTTCGGGTTGTCATGCCAATGCATGCCCGGTAGCTAAATCGGAGAGATAAGTGCTGAAACATCTAAGCACA
+ AACTTCCCGAGAGAGTTCTCCCAGGAACGTTGAAGACGACACGTGATGGTCGG
+
+Rhodospirillum CAGAGAAGGCATCTGGTGGATGCCTTGGCGTCAAGGCGATGAAGGACGTGGCACCTGCGAAAAGCCATGGGGAGCTGAGAGAAGCTTGATCCATGGATAT
+ CCGAATGTCCCCATGAGCGACCCGGCGACTGAAACATCTAAGTAGCCGGGGAAAGGAAATCAACGAGACTCCGTTAGTAGTGGCGAGCGAACGCGGATCA
+ GCCCGTATAAACCGGAACCGTCTGGAAATCGGGCCTAGCGGTGAAGCCCCGTAGGAGACCTGAGTGGGCGGGACACGTGAAATCCTGTCTGAACGTGGGG
+ GGACCACCCTCCAAGGCTAAGTACTCTTGACGACCGATAGTGCACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAACCGGATGCCT
+ ACAACAGTCGGAGCCTCAGGTGACGGGTACCTTTTGTATAATGGGTCAGCGACTTAATCTGGCGAGCAGCTTAAGATGGTAGGCGCAGCGAGCGGTCTTA
+ ATAGGGCGGAGTTCGTCGGATTAGACCCAAACCGGTGATCTAGCCATGGGCAGTTGAAGGTGGATAACACCCACTGGAGGACCGAACACGTCTGTTGAAA
+ AAGACGGGATGACTGTGCTAGGGGTGAAAGGCCAATCAAACTCGAAATAGCTGGTCTCCGCGAAAGCTATTTAGGTAGCGCGTCGGATACCACCGGGGTA
+ GAGCACTGGATGGGCTAGGGCCAGCCAAACCTAACCAAACTCCGAATACCGGTATCCGGCAGACAGACCAGGGTGCTAACGTCCTGGGTCAAGAGGGAAA
+ CAACCCAGACCACCAGCTAAGTCCCCAAGCCGGCTAAGTGGAAAGGATGTGGACGGCCATAACAACCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAACAGCTCACTGGTCTAGCTATCCCCGAAGATGTCGGCTAAGCCGTGCACCGAAGCTGTGGATTCGTGGTAGCGGAGCGTTCCGTACCTGTAAGGTG
+ TCTCGTAAGGATGCTGGAGGTATCGGAAGCGAGAATGTGACATGAGTAGCGAAGGAGTGTGAGAAACACTCCCGCCGAAAGCCCAAGGTTCCTGCGCAAG
+ CTAATCCGCGCAGGGTGAGTCGGCCCCTAAGTCGAGGGCGAACGTAGACGATGGGAATCAGGTAATATTCTGAACGTGACGCCTTTCGGAGTTGTCCTCA
+ TCGGAGGCAGGAAGGCCGGGAAATACACCGTACCAAACCGACACAGGTGGGCGGTAGAGTATACCAAGGCGTTGAGAGAATGGTGTTGAAGGAACTAGGC
+ AAATTGCCCCCGTAACTTCGGGAGAAGGGGGCCCTCCATGGGGGCACAGACCGGGGGGGGACTGTTTACTAAAAACACAGGCTCTGCGAAGTCGCAAGAC
+ ACGTATAGGGTCTGACGCCTGCCCGGTGCCGGAAGGTTAAGAGGAGAGGTCAAGTTTGAATCGAAGCCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCCCCGCTGTCTCCAACACCAACTCAGCGAAATTGAATTCTC
+ CGTGAAGATCGGAGTTCCCACGGCCAGACGGAAGACCCCAGAACCTTTACTACAACTTCGCAGTGGCATTAGGCGATGGATGTGTAGGATAGGCGGGAGG
+ CTTTGAAGCATAGGCGCCAGCTTGTGTGGAGCCCCCTGAAATACCGCCCTTCCGTCTCCTATGTCTAACCGCGATTCCGGGACCCTGCGTGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGATGGTGGGCTCAGGCCGGTCGGAAATCGGCTGATGAGTGCAATGGCAAAAGCCCGCC
+ TGACTGCGAGAGCGACATTGAGCAGAGTCGAAAGGGTCATAGTGATCCGGTGGTCCCGGTGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATACTGCCCAAGAGTCCACATCGACGGCAGGTTTGGCACCTCGATGTCGGCTCATCACATCCTGGGGCTGGAGCAGGTCCAAGGGTTCGCTG
+ TTCGCCGATAAAGTGGTACGTGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCCCTATCTACCGTGGGTGTAGGATATTGAGAGGACTGTCCCTAGTA
+ CGAGAGGACCGGGATGGACATACTCTGGTGTACCAGTTGTCACGCCAGTGCACGCTGGGTAGCTAAGTTGGCGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTCCTAAAACAGGTATCCCAGGACCGTGGAAGACCACACGTGATGGCCGG
+
+Borrelia GTAATAAGGTCTATGGTGAATGCCTAGGAGCTTAGGCGAAGAAGGTCGTGGTAACTGCGAAAAGCTTGGGGGAGAAGCAAAATTTATGATCCCAAGATTA
+ CCGAATGTCTTTAAGACGAACCAGGGGAGTGAACCATCTAAGTACCCTGGGAAAAGAAATCAAAGAGATTCCCTTAGTAGTGGCGAGCGAAAAGGGAGTA
+ GCCCGGATATAGAAGAATAATCTGGAAATTTAACCAAGAGGTGAAGTCCTGTATTAATCCTGAGTGGACGAGGCACGAGAAACCTTGTTTGAAGCTGGGG
+ AGACCACTCTCCAAGGCTAAATACTAAAAGCTACCGATAGAGAAGAGTACCGTGAGGAAAGGTGAAAAGACCGGAGTGAAAAGACTGAAACCGTAGACTT
+ ACAACAGTCAAAGCCGTCGGTGATGGGTGCCTTTTGCATAATGAACCTGCGAGTTATCATGTCTAGCAGATTAAAGACGGAGTCGAAGCGAGCGGTCTTA
+ AAAGGGCGTAGTTAGATGTGGTAGACCCAAGCCAGTGATCTATTTATGGCCAGCTGAAGCTTGGTAAAACCAAGTGGAGGGCCGAACTAGTCTGTTTAAA
+ AAGGCGGGATGAGTGTAATAGGAGTGAAAGGCTAAACAAACTCGAGATAGCTGGTCTCCCCGAAATGGATTTAAGTTCAGCCTTATTGTTTAATAAGGTA
+ GAGCACTAATTGAGCTAGCCTTAGGGAAACTCAGTTAAACTCCGAATGCTATATAATAGGAGTGAGACATGGGCGATAAGGTTCATAGTCGAGAGGGAAA
+ CAACCCAGACCAACAGCTAAGTCTCAAAAAGTGTTAAGTGGAAAGGAGGTTAGGTACGTAAACAGCCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTACTTACCGATAATGTCGGCTAAACACATTACCGAAGCTTTGGATAAATGGTAGGGGAGCGTTCTGTACCAGAAAGTTA
+ AGCTGGAAGTTTGATGGAGGTATCAGAAGTGAGAATGAGGTATGAGTAACGAAAATGGGTGAGATTCCCATTCGCCGAAAACCTAAGGTTCCTGGGTAAG
+ GTCGTCTTCCCAGGGTTAGTCGGCCCCTAAGGCAAAGCTGAATGTAGTCGATGGGAAACGGGTAATATTCCGTACGTGACGCATAGGTTACTACTCTAGA
+ TGGCTAGGTAGCGTGCCAAGAAATACACCGTACCAAACCGACACAGGTAGGTGGATGAAAATTCTAAGGCGGCGAGAGAATCCACGTTAAGGAACTCTGC
+ AAAATACGTACGTAACTTCGGGATAAGTACGACCTACATAGTAGCATAAAAAGGTCCAAGACTGTTTACCAAAAACACAGGCTCTGCAAATCTGTAAAGA
+ AAGTATAGGGACTGACACCTGCCCGGTGCTGGAAGGTTAAGAGGAGATGTTATGATTGAATTTAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAATGGTGTAACGATTTGGACGCTGTCTCAACGTGGAGCTCGGTGAAATTGAAGTATC
+ GGTGAAGATCCGATTACTTGTGGTTAGACGGAAGACCCCGGAACCTTTACTATAGCTTGGTATTGAGATTTGATTAAATATGTGTAGGATAGGTGGGAGA
+ CTTTGAAGCTATCTCGTCAGGGGTAGTGGAGTCATCTGAAATACCACCCTTGTTTAATTAGTTTCTAACTTATAAATGAGGAGAGTGCCAGGTGGGTAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGTGCGCAAAGGTTACCTTAGAGTGGTTGGAAATCACTCTGTAAGTGTAAAGGCATAAGGTAGCT
+ TAACTGTAAGACTGACAGTGAACAGATACGAAAGGGTCTTAGTGATCTGGCGGTGGCAGTGGAAGCGCCGTCACTTAACGAATAAAGGTACTCCGGGATA
+ ACAGGCTTATCCTTCCCAAGAGTTCACATCGACGGAAGGTTTGGCACCTCGATGTCGGCTCATCGCATCCTAGGGCTGGAGCAGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTTGGTCCCTATCTGCCACAAGCGTTGGATATTGAGAGGACTATCTTTAGTA
+ CGAGAGGACCGAGATGGACGAACTCTAGTGTGCCAGTTATCCTGCCAAGGTATGCTGGGTAGCTACGTCGGAAGGATAACCGCTGAAACATCTAAGTGGA
+ AGCCTCCTAAGAGAGATATCCTAGGGTCCTGGAAGAATACAGGTGATGGTTAG
+
+Burkholderia at mallei CGAACAAGGCATGTGGTGGATGCCTTGGCGATCAGGCGATGAAGGACGCGGTAGCTGCGAAAAGCTACGGGGAGCTGCAAAGAGCTTGATCCGTAGATGT
+ CCGAATGTCCACATGAGCGACGCGGTGACTGAAACATCTAAGTAACCGCGGAAAAGAAATCAACGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGAAGA
+ GCCTACTGTTAGCCGAACGCTCTGGAAATGCGGCCTAGCGGTGAAGCCCTGTAGCAAAGACAAGTGGGCGGGACACGTGAAATCCTGTCTGAAGATGGGG
+ GGACCATCCTCCAAGGCTAAATACTCTGATCGACCGATAGTGAACAGTACCGTGAGGAAAGGCGAAAAGACCGGAGTGAAAAGTCTGAAACCGCATGCAT
+ ACAACAGTCGGAGCCTCGGGTGACGGGTACCTTTTGTATAATGGGTCAGCGACTTACGTTCAGTAGCAGCTTAACAAGGCAGGCGTAGCGAGCGGTCCGA
+ ATAGGGCGCAGTTGCTGGGCGTAGACCCAAACCGGTGATCTATCCATGGCCAGATGAAGGTGCGTAACACGTACTGGAGGTCCGAACACTAACGTTGAAA
+ AGTTAGGGATGAGTGTGATAGGGGTGAAAGGCTAAACAAACCTGAAATAGCTGGTCTCTCCGAAAACTATTTAGGTAGTGCCTCGTGCACCTTCGGGGTA
+ GAGCACTGTCATGGTTGGGTCTGGATACGCCATAGCAAACTCCGAATACCGATGCACGGGAGACAGACATGGGTGCTAACGTCCGGTGTCAAGAGGGAAA
+ CAACCCAGACCGCCAGCTAAGTCCCCAAAATGGCTAAGTGGAAACGAAGTGGAAGGCTAAAACAGTCAGGAGGTTGCTTAGAAGCAGCCTTTAAAGAAAG
+ CGTAATAGCTCACTGATCGAGTCGTCCCGGAAGATGTCGGCTAAGCCATATACCGAAGCTGCGGATAGATGGTAGGAGAGCGTTCCGTACCTGCAAGGTG
+ CGTTGAAAGCGTGCTGGAGGTATCGGAAGTGCGAATGTGACATGAGTAGCGAAAGGGGGTGAAAGGCCCCCTCGCCGTAAGCCCAAGGTTCCTACGCAAG
+ TTCATCGGCGTAGGGTGAGTCGGCCCCTAAGGCGAGGCAGAACGTAGCTGATGGGAAGCAGGCAATATTCTGCACGGGACGGATGCGGAAGGTTGCCGGT
+ TGGCCGGAATTTGTTCCAAGAAAAGCACCGTACCAAACCGACACAGGTGGGCGAGAGAGTATTCTAAGGCGTTGAGAGAACTCGGGAGAAGGAACTCGGC
+ AAATTGGTACCGTAACTTCGGGATAAGGTACGCCCTTGAGGTTGCAATAAACGGTGGTGGACTGTTTAATAAAAACACAGCCTCTGCAAACACGAAAGTG
+ ACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGATTAAATGATGGGGTCAAGTCTTGATTGAAGTCCCGGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGATGGCCACACTGTCTCCTCCCGAGACTCAGCGAAGTTGAAGTGTT
+ TGTGATGATCAATCTACCCGCGGCTAGACGGAAGACCCCAGAACCTTTACTGTAGCTTTGCATTGGACTTTGAACCGATCTGTGTAGGATAGGTGGGAGG
+ CTATGAAACCGGAATGCTAGTTTCGGTGGAGCCTCCTGAAATACCACCCTGGTTTGTTTGGGTTCTAACCTTGATTCGGGGACAGTGCATGGTAGGCAGT
+ TTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGAGTACGAAGGTACGCTAGGTACGGTCGGAAATCGTGCTGATAGTGCAATGGCATAAGCGTGCT
+ TAACTGCGAGACCGACAGTGAGCAGGTGCGAAAGGGTCATAGTGATCCGGTGGTTCTGATGGAAGGGCCATCGCTCAACGGATAAAGGTACTCTGGGATA
+ ACAGGCTGATACCGCCCAAGAGTTCATATCGACGGCGGGTTTGGCACCTCGATGTCGGCTCATCTCATCCTGGGGCTGTAGCCGGTCCAAGGGTATGCTG
+ TTCGCCATTAAAGAGGTACGTGAGCTGGGTTTAAAACGTGTGAGACAGTTTGGTCCCTATCTGCCGTGGGCGTTGGAAGTTGAAGGGGCTGCTCCTAGTA
+ CGAGAGGACCGGAGTGGACGAACTCTGGTGTACCGGTTGTGACGCCAGTCCACGCCGGGTAGCTATGTCGGAGAGATAACCGCTGAAACATCTAAGCGGG
+ AACTCCCTAAGAGAGACTTCCCAGGGTCGTTCGAGACCAGACGTGATGGTCGG
+
+Bacillus at globisporus TTAGAAAGGCGCATGGTGGATGCCTTGGCACTAAGCCTAAGAAGGACGGCACTACACCGATATGCTCCGGGGAGCTGTAAGAAGCTTGATCCGGAGATTT
+ CCGAATGCGTACATCGGCAACCCGGAGACTGAAACATCTAAGTATCCGGGGAATAGAAAGAAAATCGATTCCCTGAGTAGCGGCGAGCGAAACGGGAAGA
+ GCCCGGAATTAGACGAAGGACCTGGAAAGTCCGCCTAGCGGTAAAGCCCCGTATCAAACCTGAGTCGGCGGAACACGTGAAATTCCGTCGGAATCCGGGA
+ GGACCATCTCCCAAGGCTAAATACTCCTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGTCTGAAACCATGTGCCT
+ ACAATTGTCAGAGCCCAGGGTGATGGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGATTCCATGCAGGTTAAGAGGGGAGCCGCAGCGAGCGGTCTGA
+ ATAGGGCGGAGTATGGGGTCGTAGACCCAAACCGGTGATCTACCCATGTCCAGGTGAAGGTAAGTAACACTTACTGGAGGCCCGAACACGTACGTTGAAA
+ AGTGCGGGATGAGTGTGGTAGCGGTGAAATTCCAATCGAACCTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCCTCAAAAGATCTCGAGGTA
+ GAGCACTGTTTGGACTAGGCCTCGGTAAATTCAGACAAACTCCGAATGCCGATATTTGGGAGTCAGACGCGGGTGATAAGATCCGTAGTCGAGAGGGAAA
+ CAGCCCAGACCACCAGTTAAGTCCCCAAGATCGTTAAGTGGAAAGGATGTGCGTTGCCCAGACAACCAGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTGGTCGAGTGGCGCCCGAAAATGTCGGCTAAACGAATCACCGAAACTGTGGATTAGTGGTAGGAGAGCGTTCCAAGGCGTCAAGCTA
+ GACCGTAAGACTGGTGGAGCGCTTGGAAGTGAGAATGCGGTATGAGTAGCGAAGAAGGGTGAGAATCCCTTCCACCGAATGCCCAAGGTTCCTGAGGAAG
+ CTCGTCCGCTCAGGGTTAGTCAGGACCTAAGTTGAGGCCGAACGTAGACGATGGACAACAGGTGATATTCTGTACGTGACGCAGAGGATAGGGTGCGCGT
+ TGGCGCGCCCTCCTGCCAAGAAAAGCCCTGTACCAAACCGACACAGGTAGGCAGGAGAGAATCCTAAGGTGTCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTTAGGGCCGCAGTGAATGGCCCAGGACTGTTTAGCAAAAACACAGGCTCTGCAAAACCGCAAGGT
+ AAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGAGGTCAAGTTCGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTATAATACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCGGGAGCTTTACTGTAACCTGATATTGAATTCCGGTGCAGCCTGTACAGGATAGGTAGGAGC
+ CTTGGATTCCGGAGCGCTAGCTTCGGATGAGGCTTGTGGGATACTACCCTGGCTGTATTGACTTCTAACCCATATCAGGAGACAGTGTCAGGCGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCGCCCAAAGGTTCCCTCAGAATGGTCGGACATCATTCGTAGAGTGCAAAGGCATAAGGGAGCT
+ TGACTGCGAGACCTACAGTGAGCAGGGTCGAAAGGGGCTTAGTGATCCGGTGGTTCCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCCGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTCCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCATCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGTACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGCAGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACATACTCTGGTGTACCAGTTGTCTTGCCAAAGCACGCTGGGTAGCTATGTTGGCGGGATAAATGCTGAAACATCTAAGCATA
+ AGCCCCCTGAGAGAGATTTCCCAGATCCCTCAAAGAAGATAGGTGATGGTCTG
+
+Enterococcus TGAATAAGGCGCACGGTGGATGCCTTGGCACTAAGCCGATGAAGGACGGGACTACACCGATATGCTTTGGGGAGCTGTACGAAGCTAGATCCAGAGATTT
+ CCGAATGCGAACATCGGTAACGCAGAGACTGAAACATCTAAGTACCTGCGGAAGAGAAAGAAAATCGATTCCCTGAGTAGCGGCGAGCGAAACGGGAAAA
+ GCCCGGAGATAGTCGAATGACTTGGAAAGTCAGTCAAGAGGTAAAACCCCGTAACAATCCTGAGTCGGCGGAACACGAGAAATTCCGTCGGAATCCGGGA
+ GGACCATCTCCCAAGGCTAAATACTCCTAGTGACCGATAGTGAACAGTACCGTGAGGAAAGGTGAAAAGCCCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAAAAGTCAAAGCCCAGGGTGATGGGTGCCTTTTGTAGAATGAACCGGCGAGTTACGATTGCATGCGGGTTAAGAAAGGAGCCGCAGCGAGCGGTCTGA
+ ATAGGGCGGAGTATGTAGTCGTAGACCCAAACCTGTGATCTACCCATGTCCAGTTGAAGGTGCGTAAAACGCACTGGAGGACCGAACACGTACGTTGAAA
+ AGTGCGGGATGAGTGTGGTAGCGGAGAAATTCCAAACGAACTTGAGATAGCTGGTCTCTCCGAAATAGCTTTAGGGCTAGCCTCGGAAGATGATGAGGTA
+ GAGCACTGTTTGGACTAGGCCTTGGTAAATTCAGATAAACTCCGAATGCCATCATCCGGGAGTCAGACGTGAGTGATAAGATCCATAGTCGAAAGGGAAA
+ CAGCCCAGACCACCAGCTAAGTCCCAAAAAATGTTAAGTGGAAAGGATGTGGGTTGCACAGACAACTAGGATGTTGCTTAGAAGCAGCCTTTAAAGAGTG
+ CGTAATAGCTCACTAGTCGAGTGACCCCCGAAAATGTCGGCTAAACATATTACCGAAGCTGTGGAGTTTTGGTAGGAGAGCGTTCTAAGGCGTCAAGGCA
+ GATCGTGAGACTGCTGGAGCGCTTAGAAGTGAGAATGCGGTATGAGTAGCGAAGACAGGTGAGAATCCTGTCCACCGAATGACTAAGGTTCCTGGGGAAG
+ CTCGTCCGCCCAGGGTTAGTCGGGACCTAAGCCGAGGCCGAACGTAGGCGATGGATAACAGGTGATATTCTGTACGGGACGCAGAGGCTAAGGAACAGAT
+ CGGTCTGTCCTCCTGCCGAGAAAAGCCCCGTACCAAACCGACACAGGTAGTCAGGAGAGAATCCTAAGGTGGCGAGAGAACTCTCGTTAAGGAACTCGGC
+ AAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTGATAACGCCGCAGTGAATGGCCCAAGACTGTTTATCAAAAACACAGGCTCTGCAAAATCGTAAGAT
+ AAGTATAGGGGCTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGAGTGCTCAAGTACGAATTGAAGCCCCAGTAAACGGCGGCCGTAACTATAACGGTCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATTTGGGCACTGTCTCAACGAGAGACTCGGTGAAATTTTAGTACC
+ TGTGAAGATCAGGTTACCCGCGACAGGACGGAAGACCCCAGGAGCTTTACTGTAGTTTGATATTGAGTGTCTGTACCGCATGTACAGGATAGGTAGGAGC
+ CGTAGAAATCGGAACGCTAGTTTCGATGGAGGCCTGTGGGATACTACCCCTGCGTTATGGCACTCTAACCCGCATTGGGAGACAGTGTCAGATGGGCAGT
+ TTGACTGGGGCGGTCGCCTCCTAAAAGGTAACGGAGGCGCCCAAAGGTTCCCTCAGAATGGTTGGAAATCATTCGAAGAGTGTAAAGGCAGAAGGGAGCT
+ TGACTGCGAGACCAACAGTGAGCAGGGACGAAAGGGGCTTAGTGATCCGGTGGTTCCGATGGAAGGGCCATCGCTCAACGGATAAAGCTACCCTGGGATA
+ ACAGGCTTATCTCCCCCAAGAGTCCACATCGACGGGGAGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGTAGTCGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTCAGAACGTGTGAGACAGTTCGGTCCCTATCCGTCGCGGGCGTTGGAAATTGAGAGGACTGTCCTTAGTA
+ CGAGAGGACCGGGATGGACTTACGCTGGTGTACCAGTTGTTCTGCCAAGGCATGCTGGGTAGCTATGTGGGAGGGATAAACGCTGAAACATCTAAGTGTA
+ AGCCCCCTAAGAGAGATTTCCCAGATCCCTGAGAGATGATAGGTGATGGTCAG
+
+Mycobacterium at leprae TGCCTAAGGCGCATGGTGGATGCCTTGGCATCGAGCCGATGAAGGACGTGGGAGCTGCGATATGCCTCGGGGAGCTGCAACGAGCGTGATCCGAGGATTT
+ CCGAATGCCCATATGGGGGACGCGGGGAGTGAAACATCTCAGTACCCGTGGAGAAGAAAACAATGTGATTCCGCAAGTAGTGGCGAGCGAACGTGGAATA
+ GGCTGGAGGTAGCGGAAAGGCCTGGGATGCCTGCCTAGAGGTGAAGCCCAGTAGCAAGCCCGAGTGCAGCGGGCCCGTGGAATCTGCTGTGAATCTGCCG
+ GGACCACCCGGTAAGCCTAAATACTTTCGATGACCGATAGCGGACAGTACCGTGAGGAATGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAACCGTCAGAGCCTTGGGTGATGGGTGCTTTTTGAAGAATGAGCCTGCGAGTCAGGACATGTCGCGGGTTAACTGGGTAGCCGCAGCGAGCGGTCTGA
+ ATAGGGCGTAGTGGCGTGTTCTGGACCCAAGCGAGTGATCTACCCATGGCCAGGTGAAGCGCGGTAAGACCGCGTGGAGGCCCGAACACTTAAGTTGAAG
+ ATTGAGGGATGAGTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTTGCGTTCCCACGAGGTA
+ GAGCACTGGATGGCCGAGGCCTCGGTAACGTCAGCCAAACTCCGAATGCCGTAACGTGGCAGTGAGACGCGGGGGATAAGCTCCGTCGTCGAAAGGGAAA
+ CAGCCCAGATCGCCGGCTAAGCCCCTAAGGGTGCTAAGTGGAAAGGATGTCAGTCGCAAAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTGCCGATAATGTCGGCTAAGCACACCGCCGAAGCCGCGGCACTTGGGTAGGGGAGCGTTCCTCATCAGCAAGCCT
+ CCGGGTAACGGTGGTGGAGGGTGGGGAAGTGAGAATGAGGCATGAGTAGCGAAGGCAAGTGAGAACCTTGCCCGCCGTAAGACCAAGGTTCCTGGGCCAG
+ CCAGTCCGCCCAGGGTGAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAAGGTAGCCGTCCAGG
+ TGGCTGGCGGTTCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTGGTCGGTAGAGCATACCAAGGCGACGAGATAACTATGGTTAAGGAACTCGGC
+ AAAATGCCTCCGTAACTTCGGGAGAAGGGGGGCCGGTTTCGTCGCAGAGACCGTGAGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGTCGTAAGAC
+ ATGTATACGGACTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGACCTGTAAAGGGAGAATTTAAGCCCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCTCAACTGTCTCAACCATAGACTCGGCGAAATTGCACTACG
+ AGTAAAGATCTCGTTACGTGCGGCAGGACGAAAGACCCCGGGACCTTCACTACAACTTGGTATTGATGTTCGGTGCGGTTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAACTTCGACGCTAGTTGGGGTGGAGTCTTGTGAAATACCACTCTGATTGTATTGACATCTAACCTCGATTTAGGGACAGTGCCTGGCGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAATGTAACGGAGGCGCCCAAAGGTTCCCTCAACCTGGTCGGTAATCAGGTGGCGAGTGTAAATGCACAAGGGGGCT
+ TGACTGCGAGACCTACAGTAAGCAGGGACGAAAGGGGATTAGTGATCCGGCACCTCTGGTGGAAGGGGTGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGAAGCAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCTCTATCCGCCGCGCGCGTCAGAAATTGAGGAAACTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTATACCAGTTGTCTCACCAGGGCACGCTGGATAGCCACGTCGGCAAGATAACCGCTGAAACATCTAAGCGGA
+ AACCTCTCAAGACAGGTTTCTTAGGCCCCCCGCAGAACACGGATGATGGTCAG
+
+Rhodococcus at erythrop TAATGAAGGCGTACGGTGGATGCCTTGGCACCAAGCCGATGAAGGACGTAGGAGCTGCGATAAGCCTCGGGGAGCTGCAACGAGCTGGATCCGAGGATGT
+ CCGAATGCCCATATGGGGGACGTGGGGAGTGAAACATCTCAGTACCCACGGAAGAGAAAACAACGTGATTCCGTGAGTAGTGGCGAGCGAAAGCGGAAGA
+ GGCTGGTGTTAGTGGAAGGGTCTGGAACGCCTGTCTAGAGGTGAAATCCCGTAACAAACCCAAGTGCACCGGGCCCGTGAAATCTGGTGTGAATCTGTCG
+ GGACCACCCGATAAGCCTGAATACTCCTGGTGACCGATAGCGGATAGTACCGTGAGGAAAGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCGTGCGCTT
+ ACAACCGTCAGAGCCTTGGGTGATGGGTGCCTTTTGAAGAATGAGCCTGCGAGTTAGGGCATATCGCGGGTTAACTGGGTAGCCGTAGCGAGCGGTCCGA
+ ATAGGGCGTAGTGGCATGCTCTAGACCCAAGCGAGTGATCTACCCATGGCCAGTTGAAGCGACGTAAGACGTCGTGGAGGACCGAACACTTAGGTTGAAA
+ ACTGAGGGATGAGTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTCGCGTTCCACCGAGGTA
+ GAGCACTGGATGGTCTAGGGCCCGCTAAAATCAGCCAAACTCCGAATGCCGGAGCGCGGCAGTGAGACGCGGGCGATAAGGTTCGTAGTCGAGAGGGAAA
+ CAGCCCAGATCGCCAGCTAAGTCCCTAAGGGTACTAAGTGGAAAGGATGTGGGTCGCGAAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATCCCCGACAATGTCGGCTAAGTACACCACCGAAGCTGCGGCAACTGGGTAGGGGAGCGTCGTGTGCCATGAAGCGG
+ CAGGGTGACTGCCGTGGAGGCCACACGAGTGAGAATGAGGCATGAGTAGCGAAGACGAGTGAGAAACTCGTCCGCCGAATGACCAAGGTTCCTGGGCCAG
+ TTAATCCGCCCAGGGTGAGTCGGGACCTAAGACGAGGCCGAACGTAGCCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAAGGTAGCTGACCAGG
+ TGGCTGGCAGTTCTGCCGAGAAAAGCCCCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACTAAGGCGTCGAGATAACTATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGGCCCTTTTGGCCGCAGAGACCGTGAGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGTCGTAAGAC
+ ATGTATACGGACTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGACCGGTTCGGTGAGAATTTAAGCCCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCTCAGCTGTCTCAACCGTAGACTCGGCGAAATTGCATTACG
+ AGTAAAGATCTCGTTACGCGCGGCAGGACGAAAGACCCCGGGACCTTCACTACAGCTTGGTATTGGTGTTCGGTTCGGTTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAGCGGTGACGCCAGTTATCGTGGAGTCTTGTGAAATACCACTCTGATCGAATTGACCTCTAACCTCGATTCAGGGACAGTGCCTGGTGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCCAAAATGTAACGGAGGCGCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTCGAGTGCAAGTGCACAAGGGAGCT
+ TGACTGTGAGACTGACAGTGTGCAGGGACGAAAGGGGACTAGTGATCCGGCACCGGCAGTGGAAGCGGTGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGTAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCTCTATCCGCCGCGCGCGTTAGAAATTGAGGAAGCTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTGGTGTGCCAGTTGTTCCGCCAGGACACGCTGGTTAGCTACGTCGGAGGGATAACCGCTGAAACATCTAAGCGGA
+ AGCCTTTCAAGAGAGGTTTCTCAGGCCCCCGGCAGACCACGGGTGATGGCCAG
+
+Mycobacterium TGTCTAAGGCGCATGGTGGATGCCTTGGCATCGAGCCGATGAAGGACGTGGGAGCTGCGATAAGCCTCGGGGAGCTGCAACGAGCGTGATCCGAGGATTT
+ CCGAATGCCCATATGGGGGACGCGGGGAGTGAAACATCTCAGTACCCGTGGAGAAGAAAACAAAGTGATTCCGTAAGTAGTGGCGAGCGAACGCGGAACA
+ GGCTGGAGGTAACGGAAGGGCCTGGGATGTCTGCCTAGAGGTGAAGCCCGGTAGTAAACCCGAGTGCAGCGGGCCCGTGGAATCTGCTGTGAATCTGCCG
+ GGACCACCCGGTAAGCCTAAATACTCTCGATGACCGATAGCGGATAGTACCGTGAGGAATGGTGAAAAGTCCGGAGTGAAAAGACTGAAACCGTGTGCCT
+ ACAACCGTCAGAGCCCCGGGTGATGGGTGCCTTTTGAAGAATGAGCCTGCGAGTCAGGACATGTCGCGGGTTAACTGGGTAGCCGCAGCGAGCGGTCTGA
+ ATAGGGCGTAGTGGCGTGTTCTGGACCCAAGCGAGTGATCTACCCATGGCCAGGTGAAGCGCGGTAAGACCGCGTGGAGGCCCGAACACTTAGGTTGAAG
+ ACTGAGGGATGAGTGTGGTAGGGGTGAAAGGCCAATCAAACTCGTGATAGCTGGTCTCCCCGAAATGCATTTAGGTGCAGCGTTGCGTTCCCACGAGGTA
+ GAGCACTGGATGGCCGAGGCCCCGGTAACGTCAGCCAAACTCCGAATGCCGTATCGTGGCAGTGAGACGCGGGGGATAAGCTCCGTCGTCGAAAGGGAAA
+ CAGCCCAGATCGCCGGCTAAGCCCCAAAGGGTGCTAAGTGGAAAGGATGTCAGTCGCAGAGACAACCAGGAGGTTGCTTAGAAGCAGCCTTGAAAGAGTG
+ CGTAATAGCTCACTGGTCAAGTGATTGCCGATAATGTCGGCTAAGCACACCGCCGAAGCCGCGACACATGGGTAGGGGAGCGTCCCTCATCAGCAAGCTG
+ CCGGGTGACGGTGGTGGAGGATGGGGGAGTGAGAATGAGGCATGAGTAGCGAAGGCAAGTGAGAACCTTGCCCGCCGAAAGACCAAGGTTCCTGGGCCAG
+ CCAGTCCGCCCAGGGTGAGTCGGGACCTAAGGCGAGGCCGAACGTAGTCGATGGACAACGGGTGATATTCCGTACGTGACGCAGAAGGCAGCCGTCCAGG
+ TGGCTGGCGGTTCTGCCAAGAAAAGCCCCGTACCAAACCGACACAGGTGGTCGGTAGAGAATACCAAGGCGACGAGATAACTATGGTTAAGGAACTCGGC
+ AAAATGCCCCCGTAACTTCGGGAGAAGGGGGACCGGTTTCGTCGCAGAAACCGTGAGAGGACTGTTTACTAAAAACACAGGCCGTGCGAAGTCGCAAGAC
+ ATGTATACGGACTGACGCCTGCCCGGTGCTGGAAGGTTAAGAGGACCCGTCAAGGGAGAATTTAAGCCCCAGTAAACGGCGGTGGTAACTATAACCATCC
+ TAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCTGCACGAATGGCGTAACGACTTCTCAACTGTCTCAACCATAGACTCGGCGAAATTGCACTACG
+ AGTAAAGATCTCGTTACGCGCGGCAGGACGAAAGACCCCGGGACCTTCACTACAACTTGGTATTGGTGTTCGGTACGGTTTGTGTAGGATAGGTGGGAGA
+ CTGTGAAACCTCAACGCCAGTTGGGGTGGAGTCTTGTGAAATACCACTCTGATCGTATTGACACCTAACGTCGATTCACGGACAGTGCCTGGCGGGTAGT
+ TTAACTGGGGCGGTTGCCTCCTAAAATGTAACGGAGGCGCCCAAAGGTTCCCTCAACCTGGACGGCAATCAGGTGGCGAGTGTAAGTGCACAAGGGAGCT
+ TGACTGCGAGACCTACAGTAAGCAGGGACGAAAGGGGACTAGTGATCCGGCACCTCTGGTGGAAGGGGTGTCGCTCAACGGATAAAGGTACCCCGGGATA
+ ACAGGCTGATCTTCCCCAAGAGTCCATATCGACGGGATGTTTGGCACCTCGATGTCGGCTCGTCGCATCCTGGGGCTGGAGCAGGTCCAAGGGTTGGCTG
+ TTCGCCCATAAAGCGGCACGCGAGCTGGGTTTAGAACGTGTGAGACAGTTCGGTCTCTATCCGCCGCGCGCGTCAGAAGTTGAGGAAACTGTCCCTAGTA
+ CGAGAGGACCGGGACGGACGAACTCTAGTGCACCAGTTGTCCCACCAGGGCACGCTGGATAGCTACGTCGGCAGGATAACCGCTGAAACATCTAAGCGGA
+ AACCTCTCAAGACAGGCTTCTCAGGCCCCCCGCAGAACACGGTTGATGGCCAG
+
diff --git a/examples/LSU/PhySamp.bpp b/examples/LSU/PhySamp.bpp
new file mode 100644
index 0000000..fde2777
--- /dev/null
+++ b/examples/LSU/PhySamp.bpp
@@ -0,0 +1,54 @@
+
+# Global variables:
+DATA = LSU
+
+# Sequences:
+
+# The alphabet to use:
+# DNA, RNA or Protein
+alphabet=DNA
+
+# The sequence file to use (sequences must be aligned!)
+input.sequence.file=$(DATA).phy
+
+# The alignment format:
+# Must be one of Mase, Fasta, Phylip, Clustal, DCSE or GenBank
+input.sequence.format=Phylip(order=sequential, type=extended)
+
+# Input method: tree or matrix
+input.method=tree
+
+# Tree file if the tree method has been selected:
+input.tree.file=$(DATA).dnd
+input.tree.format=Newick
+
+# Matrix file if the matrix method has been selected:
+input.matrix=
+
+#threshold or sample
+deletion_method=sample
+# Threshold to use (same unit as distances on the tree/matrix)
+TYPE=05
+threshold=0.$(TYPE)
+# OR sample size:
+TYPE=20
+sample_size=$(TYPE)
+
+
+# Criterion to choose between sequences:
+# - length: keep the sequence with the highest number of positions
+# - length.complete: keep the sequence with the highest number of complete positions
+# - random: Keep a sequence randomly
+choice_criterion=length.complete
+
+# Output sequence file
+output.sequence.file=$(DATA).$(TYPE).fasta
+
+# Ouput format:
+output.sequence.format=Fasta()
+
+# Output tree file
+output.tree.file=$(DATA).$(TYPE).dnd
+
+# Ouput format:
+output.tree.format=Newick
diff --git a/examples/PF01049/runFasttree.sh b/examples/PF01049/runFasttree.sh
new file mode 100755
index 0000000..63792fc
--- /dev/null
+++ b/examples/PF01049/runFasttree.sh
@@ -0,0 +1,3 @@
+#! /bin/bash
+fasttree < PF01049_full.txt > PF01049_fasttree.dnd
+
diff --git a/man/CMakeLists.txt b/man/CMakeLists.txt
index a9a78e4..9b2bfe6 100644
--- a/man/CMakeLists.txt
+++ b/man/CMakeLists.txt
@@ -2,6 +2,39 @@
# Author: Julien Dutheil
# Created: 24/10/2014
-IF(MAN)
- INSTALL(FILES bppalnoptim.1.gz DESTINATION share/man/man1)
-ENDIF(MAN)
+# Build manpages.
+# In practice, they are just compressed from the text files using COMPRESS_PROGRAM
+# Manpages are built and installed as part of "all" if a COMPRESS_PROGRAM is found.
+
+# Take all manpages files in the directory
+file (GLOB manpage_files RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} *.1)
+
+if (NOT COMPRESS_BIN)
+ # Just install manpages from source
+ foreach (manpage_file ${manpage_files})
+ install (FILES ${CMAKE_CURRENT_SOURCE_DIR}/${manpage_file} DESTINATION ${CMAKE_INSTALL_MANDIR}/man1)
+ endforeach (manpage_file)
+else ()
+ # Create a list of manpage targets
+ set (manpage-targets)
+
+ foreach (manpage_file ${manpage_files})
+ # Compress manpage, install, add to manpage target list
+ set (input ${CMAKE_CURRENT_SOURCE_DIR}/${manpage_file})
+ set (output ${CMAKE_CURRENT_BINARY_DIR}/${manpage_file}.${COMPRESS_EXT})
+ add_custom_command (
+ OUTPUT ${output}
+ COMMAND ${COMPRESS_BIN} ${COMPRESS_ARGS} ${input} > ${output}
+ DEPENDS ${input}
+ COMMENT "Compressing manpage ${manpage_file}"
+ VERBATIM
+ )
+ install (FILES ${output} DESTINATION ${CMAKE_INSTALL_MANDIR}/man1)
+ list (APPEND manpage-targets ${output})
+ unset (input)
+ unset (output)
+ endforeach (manpage_file)
+
+ # Add target "man", built with "all" (needed because install will fail if not built).
+ add_custom_target (man ALL DEPENDS ${manpage-targets})
+endif ()
diff --git a/man/bppalnoptim.1.txt b/man/bppalnoptim.1
similarity index 97%
rename from man/bppalnoptim.1.txt
rename to man/bppalnoptim.1
index a25f666..4b0d6db 100644
--- a/man/bppalnoptim.1.txt
+++ b/man/bppalnoptim.1
@@ -34,4 +34,4 @@ reads a file for loading options
.SH AUTHOR
-Julien Dutheil.
+Julien Y. Dutheil.
diff --git a/physamp.spec b/physamp.spec
new file mode 100644
index 0000000..4790dcb
--- /dev/null
+++ b/physamp.spec
@@ -0,0 +1,87 @@
+%define _basename physamp
+%define _version 1.0.1
+%define _release 1
+%define _prefix /usr
+
+URL: https://github.com/jydu/maffilter
+
+Name: %{_basename}
+Version: %{_version}
+Release: %{_release}
+License: GPL-3.0
+Vendor: Julien Dutheil
+Source: %{_basename}-%{_version}.tar.gz
+Summary: The PhySamp package
+Group: Productivity/Scientific/Other
+
+Requires: libbpp-phyl11 = 2.3.1
+Requires: libbpp-seq11 = 2.3.1
+Requires: libbpp-core3 = 2.3.1
+
+BuildRoot: %{_builddir}/%{_basename}-root
+BuildRequires: cmake >= 2.8.11
+BuildRequires: gcc-c++ >= 4.7.0
+BuildRequires: groff
+BuildRequires: texinfo >= 4.0.0
+BuildRequires: libbpp-core3 = 2.3.1
+BuildRequires: libbpp-core-devel = 2.3.1
+BuildRequires: libbpp-seq11 = 2.3.1
+BuildRequires: libbpp-seq-devel = 2.3.1
+BuildRequires: libbpp-phyl11 = 2.3.1
+BuildRequires: libbpp-phyl-devel = 2.3.1
+
+
+AutoReq: yes
+AutoProv: yes
+%if 0%{?mdkversion}
+%if 0%{?mdkversion} >= 201100
+BuildRequires: xz
+%define zipext xz
+%else
+BuildRequires: lzma
+%define zipext lzma
+%endif
+%else
+BuildRequires: gzip
+%define zipext gz
+%endif
+
+%description
+Includes programs:
+ - bppalnoptim, optimize the amount of missing data in a sequence alignment,
+ - bppphysamp, sample species according phylogeny
+
+%prep
+%setup -q
+
+%build
+CFLAGS="$RPM_OPT_FLAGS"
+CMAKE_FLAGS="-DCMAKE_INSTALL_PREFIX=%{_prefix} -DCOMPRESS_PROGRAM=%{compress_program}"
+cmake $CMAKE_FLAGS .
+make
+
+%install
+make DESTDIR=$RPM_BUILD_ROOT install
+
+%clean
+rm -rf $RPM_BUILD_ROOT
+
+%post -p /sbin/ldconfig
+
+%postun -p /sbin/ldconfig
+
+%files
+%defattr(-,root,root)
+%doc AUTHORS LICENSE INSTALL ChangeLog
+%{_prefix}/bin/bppalnoptim
+%{_prefix}/bin/bppphysamp
+%{_prefix}/share/info/physamp.info.*
+%{_prefix}/share/man/man1/bppalnoptim.1.*
+%{_prefix}/share/man/man1/bppphysamp.1.*
+
+%changelog
+* Tue Jun 06 2017 Julien Dutheil <dutheil at evolbio.mpg.de> 1.0.1-1
+- Compatibility update with Bio++ 2.3.1
+* Fri May 26 2017 Julien Dutheil <dutheil at evolbio.mpg.de> 1.0.0-1
+- Initial release
+
diff --git a/physamp/AlignmentOptimizer.cpp b/physamp/AlignmentOptimizer.cpp
index 3c6030f..1ed128a 100755
--- a/physamp/AlignmentOptimizer.cpp
+++ b/physamp/AlignmentOptimizer.cpp
@@ -1,5 +1,5 @@
//
-// File: bppAlignmentOptimizer.cpp
+// File: AlignmentOptimizer.cpp
// Created by: Julien Dutheil
// Created on: October 24th 2014 11:15
//
@@ -36,8 +36,8 @@ using namespace std;
#include <Bpp/Numeric/Random/RandomTools.h>
// From bpp-seq:
-#include <Bpp/Seq/Alphabet.all>
-#include <Bpp/Seq/Container.all>
+#include <Bpp/Seq/Alphabet/AlphabetTools.h>
+#include <Bpp/Seq/Container/SequenceContainerTools.h>
#include <Bpp/Seq/SiteTools.h>
#include <Bpp/Seq/App/SequenceApplicationTools.h>
@@ -54,7 +54,7 @@ void help()
(*ApplicationTools::message << "bppalnoptim parameter1_name=parameter1_value").endLine();
(*ApplicationTools::message << " parameter2_name=parameter2_value ... param=option_file").endLine();
(*ApplicationTools::message).endLine();
- (*ApplicationTools::message << " Refer to the Bio++ Program Suite Manual for a list of available options.").endLine();
+ (*ApplicationTools::message << " Refer to the PhySamp manual for a list of available options.").endLine();
(*ApplicationTools::message << "__________________________________________________________________________").endLine();
}
@@ -400,8 +400,8 @@ class InputSelector: public Selector {
int main(int args, char ** argv)
{
cout << "******************************************************************" << endl;
- cout << "* Bio++ Alignment Optimizer, version 0.2.0. *" << endl;
- cout << "* Author: J. Dutheil Last Modif. 23/03/15 *" << endl;
+ cout << "* Bio++ Alignment Optimizer, version 1.0.1. *" << endl;
+ cout << "* Author: J. Dutheil Last Modif. 09/06/17 *" << endl;
cout << "* E. Figuet *" << endl;
cout << "******************************************************************" << endl;
cout << endl;
diff --git a/physamp/CMakeLists.txt b/physamp/CMakeLists.txt
index 691a966..8a5acb0 100644
--- a/physamp/CMakeLists.txt
+++ b/physamp/CMakeLists.txt
@@ -2,16 +2,21 @@
# Author: Julien Dutheil
# Created: 24/10/2014
-#ADD_EXECUTABLE(bppphysamp PhyloSampler.cpp)
-#TARGET_LINK_LIBRARIES(bppphysamp ${LIBS})
-#SET_TARGET_PROPERTIES(bppphysamp PROPERTIES LINK_SEARCH_END_STATIC ${BUILD_STATIC})
-
ADD_EXECUTABLE(bppalnoptim AlignmentOptimizer.cpp)
-TARGET_LINK_LIBRARIES(bppalnoptim ${LIBS})
-SET_TARGET_PROPERTIES(bppalnoptim PROPERTIES LINK_SEARCH_END_STATIC ${BUILD_STATIC})
+ADD_EXECUTABLE(bppphysamp PhyloSampler.cpp)
+SET (physamp-targets
+ bppalnoptim
+ bppphysamp
+ )
+
+FOREACH (target ${physamp-targets})
+ # Link (static or shared)
+ IF (BUILD_STATIC)
+ TARGET_LINK_LIBRARIES (${target} ${BPP_LIBS_STATIC})
+ SET_TARGET_PROPERTIES (${target} LINK_SEARCH_END_STATIC TRUE)
+ ELSE (BUILD_STATIC)
+ TARGET_LINK_LIBRARIES (${target} ${BPP_LIBS_SHARED})
+ ENDIF (BUILD_STATIC)
+ENDFOREACH (target)
-# Install progs
-INSTALL(TARGETS
- #bppphysamp
- bppalnoptim
- DESTINATION bin)
+INSTALL (TARGETS ${physamp-targets} DESTINATION ${CMAKE_INSTALL_BINDIR})
diff --git a/physamp/PhyloSampler.cpp b/physamp/PhyloSampler.cpp
new file mode 100755
index 0000000..b24afcd
--- /dev/null
+++ b/physamp/PhyloSampler.cpp
@@ -0,0 +1,267 @@
+//
+// File: PhyloSampler.cpp
+// Created by: Julien Dutheil
+// Created on: Sunday, December 2nd 2007 16:48
+//
+
+/*
+ This file is part of the PhySamp package.
+
+ PhySamp is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ PhySamp is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with Foobar. If not, see <http://www.gnu.org/licenses/>.
+*/
+
+// From the STL:
+#include <iostream>
+#include <iomanip>
+
+using namespace std;
+
+#include <Bpp/App/BppApplication.h>
+#include <Bpp/App/ApplicationTools.h>
+#include <Bpp/Io/FileTools.h>
+#include <Bpp/Text/TextTools.h>
+#include <Bpp/Numeric/DataTable.h>
+#include <Bpp/Numeric/Random/RandomTools.h>
+
+// From bpp-seq:
+#include <Bpp/Seq/SiteTools.h>
+#include <Bpp/Seq/SequenceTools.h>
+#include <Bpp/Seq/App/SequenceApplicationTools.h>
+
+// From bpp-phyl:
+#include <Bpp/Phyl/Tree.h>
+#include <Bpp/Phyl/App/PhylogeneticsApplicationTools.h>
+#include <Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h>
+
+using namespace bpp;
+
+void help()
+{
+ (*ApplicationTools::message << "__________________________________________________________________________").endLine();
+ (*ApplicationTools::message << "bppphysamp parameter1_name=parameter1_value").endLine();
+ (*ApplicationTools::message << " parameter2_name=parameter2_value ... param=option_file").endLine();
+ (*ApplicationTools::message).endLine();
+ (*ApplicationTools::message << " Refer to the PhySamp manual for a list of available options.").endLine();
+ (*ApplicationTools::message << "__________________________________________________________________________").endLine();
+}
+
+class Index {
+ public:
+ double distance;
+ unsigned int i1, i2;
+
+ public:
+ Index(double dist, unsigned int i, unsigned int j) : distance(dist), i1(i), i2(j) {}
+
+ public:
+ bool operator==(const Index& index) const { return distance == index.distance; }
+ bool operator<(const Index& index) const { return distance < index.distance; }
+};
+
+class Test {
+ private:
+ unsigned int pos_;
+
+ public:
+ Test(unsigned int pos) : pos_(pos) {}
+
+ public:
+ bool operator()(const Index& index) { return index.i1 == pos_ || index.i2 == pos_; }
+};
+
+int main(int args, char ** argv)
+{
+ cout << "******************************************************************" << endl;
+ cout << "* Bio++ Phylogenetic Sampler, version 1.0.1. *" << endl;
+ cout << "* Author: J. Dutheil Last Modif. 09/06/17 *" << endl;
+ cout << "******************************************************************" << endl;
+ cout << endl;
+
+ if(args == 1)
+ {
+ help();
+ return 0;
+ }
+
+ try {
+
+ BppApplication bppphysamp(args, argv, "BppPhySamp");
+ bppphysamp.startTimer();
+
+ //Get sequences:
+ Alphabet* alphabet = SequenceApplicationTools::getAlphabet(bppphysamp.getParams());
+ SequenceContainer* seqs = SequenceApplicationTools::getSequenceContainer(alphabet, bppphysamp.getParams());
+
+ string inputMethod = ApplicationTools::getStringParameter("input.method", bppphysamp.getParams(), "tree");
+ ApplicationTools::displayResult("Input method", inputMethod);
+
+ unique_ptr< DistanceMatrix > dist;
+ unique_ptr< TreeTemplate<Node> > tree;
+ if(inputMethod == "tree")
+ {
+ tree.reset(dynamic_cast<TreeTemplate<Node> *>(PhylogeneticsApplicationTools::getTree(bppphysamp.getParams())));
+ dist.reset(TreeTemplateTools::getDistanceMatrix(*tree));
+ //PhylipDistanceMatrixFormat matIO;
+ //matIO.write(*dist.get(), "matrix.txt");
+ }
+ else if(inputMethod == "matrix")
+ {
+ string distPath = ApplicationTools::getAFilePath("input.matrix", bppphysamp.getParams(), true, true);
+ PhylipDistanceMatrixFormat matIO;
+ dist.reset(matIO.read(distPath));
+ }
+ else throw Exception("Unknown input method: " + inputMethod);
+
+ string deleteMeth = ApplicationTools::getStringParameter("deletion_method", bppphysamp.getParams(), "threshold");
+ ApplicationTools::displayResult("Deletion method", deleteMeth);
+
+ string critMeth = ApplicationTools::getStringParameter("choice_criterion", bppphysamp.getParams(), "length");
+ ApplicationTools::displayResult("Sequence choice criterion", critMeth);
+
+ //Compute lengths:
+ vector<string> seqNames;
+ vector<size_t> seqLen(dist->size());
+ string name;
+ for(size_t i = 0; i < dist->size(); i++)
+ {
+ name = dist->getName(i);
+ if (critMeth == "length.complete")
+ seqLen[i] = SequenceTools::getNumberOfCompleteSites(seqs->getSequence(name));
+ else
+ seqLen[i] = SequenceTools::getNumberOfSites(seqs->getSequence(name));
+ seqNames.push_back(name);
+ }
+
+ //Sort matrix entries:
+ vector<Index> distances;
+ for (unsigned int i = 0; i < dist->size()-1; i++)
+ for (unsigned int j = i+1; j < dist->size(); j++)
+ distances.push_back(Index((*dist)(i, j), i , j));
+ sort(distances.begin(), distances.end());
+
+ if (deleteMeth == "random")
+ {
+ unsigned int sampleSize = ApplicationTools::getParameter<unsigned int>("sample_size", bppphysamp.getParams(), 10);
+ ApplicationTools::displayResult("Sample size", sampleSize);
+ vector<string> sample(sampleSize);
+ RandomTools::getSample(seqNames, sample, false);
+ seqNames = sample;
+
+ double mini = -log(0.);
+ for (unsigned int i = 0; i < seqNames.size() - 1; ++i)
+ for (unsigned int j = i + 1; j < seqNames.size(); ++j)
+ {
+ double d = (*dist)(seqNames[i], seqNames[j]);
+ if (d < mini) mini = d;
+ }
+ ApplicationTools::displayResult("Minimal distance in final data set:", mini);
+ }
+ else if (deleteMeth == "threshold")
+ {
+ double threshold = ApplicationTools::getDoubleParameter("threshold", bppphysamp.getParams(), 0.01);
+ ApplicationTools::displayResult("Distance threshold", threshold);
+
+ unsigned int rm = 0;
+ while (distances[0].distance <= threshold)
+ {
+ //We need to chose between the two sequences:
+ if (critMeth == "length" || critMeth == "length.complete")
+ {
+ if (seqLen[distances[0].i1] > seqLen[distances[0].i2]) rm = distances[0].i2;
+ else rm = distances[0].i1;
+ }
+ else if (critMeth == "random")
+ {
+ if (RandomTools::flipCoin()) rm = distances[0].i2;
+ else rm = distances[0].i1;
+ }
+ else throw Exception("Unknown criterion: " + critMeth);
+
+ //Remove sequence in list:
+ size_t pos = VectorTools::which(seqNames, dist->getName(rm));
+ ApplicationTools::displayResult("Remove sequence", seqNames[pos]);
+ seqNames.erase(seqNames.begin() + static_cast<ptrdiff_t>(pos));
+
+ //Ignore all distances from this sequence:
+ remove_if(distances.begin(), distances.end(), Test(rm));
+ if (distances.size() == 0)
+ throw Exception("Error, all sequences have been removed with this criterion!");
+ }
+ ApplicationTools::displayResult("Number of sequences kept:", seqNames.size());
+ }
+ else if (deleteMeth == "sample")
+ {
+ unsigned int sampleSize = ApplicationTools::getParameter<unsigned int>("sample_size", bppphysamp.getParams(), 10);
+ ApplicationTools::displayResult("Sample size", sampleSize);
+
+ unsigned int rm = 0;
+ while (seqNames.size() > sampleSize)
+ {
+ //We need to chose between the two sequences:
+ if (critMeth == "length" || critMeth == "length.complete")
+ {
+ if (seqLen[distances[0].i1] > seqLen[distances[0].i2]) rm = distances[0].i2;
+ else rm = distances[0].i1;
+ }
+ else if (critMeth == "random")
+ {
+ if (RandomTools::flipCoin()) rm = distances[0].i2;
+ else rm = distances[0].i1;
+ }
+ else throw Exception("Unknown criterion: " + critMeth);
+
+ //Remove sequence in list:
+ size_t pos = VectorTools::which(seqNames, dist->getName(rm));
+ ApplicationTools::displayResult("Remove sequence", seqNames[pos]);
+ seqNames.erase(seqNames.begin() + static_cast<ptrdiff_t>(pos));
+
+ //Ignore all distances from this sequence:
+ remove_if(distances.begin(), distances.end(), Test(rm));
+ }
+ ApplicationTools::displayResult("Minimal distance in final data set:", distances[0].distance);
+ }
+ else throw Exception("Unknown deletion method: " + deleteMeth + ".");
+
+ //Write sequences to file:
+ AlignedSequenceContainer asc(alphabet);
+ for (size_t i = 0; i < seqNames.size(); i++)
+ asc.addSequence(seqs->getSequence(seqNames[i]));
+
+ SequenceApplicationTools::writeAlignmentFile(asc, bppphysamp.getParams());
+
+ //Write tree file:
+ if (ApplicationTools::getStringParameter("output.tree.file", bppphysamp.getParams(), "None") != "None") {
+ vector<string> allSeqNames(seqs->getSequencesNames());
+ vector<string> removedSeqNames;
+ VectorTools::diff(allSeqNames, seqNames, removedSeqNames);
+ for (size_t i = 0; i < removedSeqNames.size(); ++i) {
+ TreeTemplateTools::dropLeaf(*tree, removedSeqNames[i]);
+ }
+ PhylogeneticsApplicationTools::writeTree(*tree, bppphysamp.getParams(), "output.", "", true, true, false);
+ }
+
+ bppphysamp.done();
+ }
+ catch (exception& e)
+ {
+ cout << endl;
+ cout << "_____________________________________________________" << endl;
+ cout << "ERROR!!!" << endl;
+ cout << e.what() << endl;
+ return 1;
+ }
+
+ return 0;
+}
+
--
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