[med-svn] [physamp] 04/07: Merge tag 'upstream/1.0.1'

[Andreas Tille]

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tille pushed a commit to branch master
in repository physamp.

commit 58f58ae0f3eded3c69dc8a7181db07803295e902
Merge: 1e8ed3d d50a940
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jun 14 15:53:16 2017 +0200

    Merge tag 'upstream/1.0.1'
    
    Upstream version 1.0.1

 AUTHORS.txt => AUTHORS                   |    0
 CMakeLists.txt                           |  258 +---
 INSTALL.txt => INSTALL                   |    0
 COPYING.txt => LICENSE                   |    9 +-
 _config.yml                              |    1 +
 buildBin.sh                              |    7 +
 doc/CMakeLists.txt                       |    7 -
 docs/CMakeLists.txt                      |   73 ++
 docs/_config.yml                         |    1 +
 docs/index.md                            |   35 +
 {doc => docs}/physamp.texi               |   58 +-
 examples/LSU/LSU.dnd                     |    1 +
 examples/LSU/LSU.phy                     | 1976 ++++++++++++++++++++++++++++++
 examples/LSU/PhySamp.bpp                 |   54 +
 examples/PF01049/runFasttree.sh          |    3 +
 man/CMakeLists.txt                       |   39 +-
 man/{bppalnoptim.1.txt => bppalnoptim.1} |    2 +-
 physamp.spec                             |   87 ++
 physamp/AlignmentOptimizer.cpp           |   12 +-
 physamp/CMakeLists.txt                   |   27 +-
 physamp/PhyloSampler.cpp                 |  267 ++++
 21 files changed, 2677 insertions(+), 240 deletions(-)

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