[med-svn] [Git][med-team/picard-tools][master] 6 commits: New upstream version 2.18.2+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / picard-tools


Commits:
60f0c861 by Andreas Tille at 2018-04-17T16:41:27+02:00
New upstream version 2.18.2+dfsg
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2a828863 by Andreas Tille at 2018-04-17T16:42:11+02:00
Update upstream source from tag 'upstream/2.18.2+dfsg'

Update to upstream version '2.18.2+dfsg'
with Debian dir 1a713756b716baa60c31f1298a336ae7d2f08459
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63de9cdf by Andreas Tille at 2018-04-17T22:46:59+02:00
New upstream version, adapt patches

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14d48ba8 by Andreas Tille at 2018-04-17T22:48:29+02:00
DEP3

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336acb9f by Andreas Tille at 2018-04-17T22:52:35+02:00
Backports-friendly debhelper 11

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0ae95078 by Andreas Tille at 2018-04-17T22:55:53+02:00
Bump versioned Build-Depends on libhtsjdk-java and default-jdk

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30 changed files:

- .dockerignore
- + .pullapprove.yml
- .travis.yml
- Dockerfile
- + LICENSE.txt
- README.md
- build.gradle
- debian/changelog
- debian/control
- debian/patches/10-build.xml.patch
- debian/patches/20-shadowjar.patch
- debian/patches/30-tests-fix-dataprovider.patch
- debian/patches/40-tests-fix-testng.patch
- gradle/wrapper/gradle-wrapper.properties
- settings.gradle
- src/main/java/picard/Test.java
- + src/main/java/picard/analysis/AbstractWgsMetricsCollector.java
- src/main/java/picard/analysis/AlignmentSummaryMetrics.java
- src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
- src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
- src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
- src/main/java/picard/analysis/CollectGcBiasMetrics.java
- src/main/java/picard/analysis/CollectInsertSizeMetrics.java
- src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java
- src/main/java/picard/analysis/CollectMultipleMetrics.java
- src/main/java/picard/analysis/CollectOxoGMetrics.java
- src/main/java/picard/analysis/CollectQualityYieldMetrics.java
- src/main/java/picard/analysis/CollectRawWgsMetrics.java
- src/main/java/picard/analysis/CollectRnaSeqMetrics.java
- src/main/java/picard/analysis/CollectRrbsMetrics.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/e77131a1bc920e0851e0ac3fd85530b047278399...0ae95078608290068f564e4f32890ec2ab94fa98

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View it on GitLab: https://salsa.debian.org/med-team/picard-tools/compare/e77131a1bc920e0851e0ac3fd85530b047278399...0ae95078608290068f564e4f32890ec2ab94fa98
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