[med-svn] [Git][med-team/freebayes][upstream] New upstream version 1.2.0

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / freebayes


Commits:
92a5438a by Andreas Tille at 2018-04-26T15:30:40+02:00
New upstream version 1.2.0
- - - - -


30 changed files:

- Makefile
- README.md
- paper/main.blg
- src/Allele.cpp
- src/Allele.h
- src/AlleleParser.cpp
- src/AlleleParser.h
- src/CNV.cpp
- src/CNV.h
- src/DataLikelihood.cpp
- src/DataLikelihood.h
- src/Fasta.cpp
- src/LargeFileSupport.h
- src/LeftAlign.h
- + src/Logging.h
- src/Makefile
- + src/Makefile.bamtools
- src/Parameters.cpp
- src/Sample.cpp
- src/Sample.h
- src/SegfaultHandler.cpp
- src/SegfaultHandler.h
- src/alleles.cpp
- src/bamleftalign.cpp
- src/freebayes.cpp
- test/t/00_region_and_target_handling.t
- test/t/01_call_variants.t
- test/t/02_multi_bam.t
- test/t/03_reference_bases.t
- + test/tiny/NA12878.chr22.tiny.hla.bam


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/freebayes/commit/92a5438a13b1cb4635b759801e6983f77de78d75

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