[med-svn] [Git][med-team/megan-ce][master] 4 commits: New upstream commit

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / megan-ce


Commits:
3a2c0787 by Andreas Tille at 2018-08-04T04:31:44Z
New upstream commit

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1c50f2e4 by Andreas Tille at 2018-08-04T04:32:06Z
New upstream version 0.0+git20180801.099e956
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331faa9a by Andreas Tille at 2018-08-04T04:33:20Z
Update upstream source from tag 'upstream/0.0+git20180801.099e956'

Update to upstream version '0.0+git20180801.099e956'
with Debian dir 665624699d91cd6a721940f9547984e267b18cdc
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5218a5fb by Andreas Tille at 2018-08-04T05:46:45Z
TODO: Sort out issue with libsis-hdf5-java which is not (yet) ported to hdf5 1.10

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30 changed files:

- debian/changelog
- resources/files/interpro2go.info
- resources/files/interpro2go.map
- resources/files/interpro2go.tre
- resources/files/ncbi.info
- resources/files/ncbi.map
- resources/files/ncbi.tre
- src/megan/algorithms/ActiveMatches.java
- src/megan/algorithms/AssignmentUsingIntervalUnionLCA.java
- src/megan/algorithms/AssignmentUsingMultiGeneBestHit.java
- src/megan/algorithms/DataProcessor.java
- src/megan/classification/commandtemplates/LoadMappingFileCommand.java
- src/megan/classification/data/ClassificationFullTree.java
- src/megan/clusteranalysis/ClusterViewer.java
- src/megan/clusteranalysis/GUIConfiguration.java
- src/megan/clusteranalysis/commands/EcologicalIndexBrayCurtisCommand.java
- src/megan/clusteranalysis/commands/EcologicalIndexChiSquareCommand.java
- src/megan/clusteranalysis/commands/EcologicalIndexCommand.java
- src/megan/clusteranalysis/commands/EcologicalIndexEuclideanCommand.java
- src/megan/clusteranalysis/commands/EcologicalIndexGoodallCommand.java
- src/megan/clusteranalysis/commands/EcologicalIndexHellingerCommand.java
- src/megan/clusteranalysis/commands/EcologicalIndexKulczynskiCommand.java
- − src/megan/clusteranalysis/commands/EcologicalIndexNormalizedGoodallCommand.java
- src/megan/clusteranalysis/commands/JensensShannonDivergenceCommand.java
- src/megan/clusteranalysis/commands/PearsonsCorrelationsDistanceCommand.java
- src/megan/clusteranalysis/commands/UnweightedTaxonomicUniFracCommand.java
- src/megan/clusteranalysis/commands/WeightedTaxonomicUniFracCommand.java
- + src/megan/clusteranalysis/indices/BrayCurtisDissimilarity.java
- − src/megan/clusteranalysis/indices/CalculateEcologicalIndices.java
- + src/megan/clusteranalysis/indices/ChiSquareDistance.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/megan-ce/compare/9ffa6207b690eff9b5b8aa170801de22eb30508f...5218a5fb442282cd9c4bd54f05459f61005cebba

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View it on GitLab: https://salsa.debian.org/med-team/megan-ce/compare/9ffa6207b690eff9b5b8aa170801de22eb30508f...5218a5fb442282cd9c4bd54f05459f61005cebba
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