[med-svn] [Git][med-team/dindel][master] 10 commits: Package dindel-tgi since this seems to be actively maintained and contains some…

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / dindel


Commits:
f6a5a869 by Andreas Tille at 2018-08-13T11:46:19Z
Package dindel-tgi since this seems to be actively maintained and contains some sensible enhancement

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e3768d23 by Andreas Tille at 2018-08-13T11:46:32Z
New upstream version 1.01-wu1-3+dfsg
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bfdf0056 by Andreas Tille at 2018-08-13T11:46:33Z
Update upstream source from tag 'upstream/1.01-wu1-3+dfsg'

Update to upstream version '1.01-wu1-3+dfsg'
with Debian dir d05d51bbea7ad18786bcdb3a1029db2e08d8b859
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2315f438 by Andreas Tille at 2018-08-13T11:56:35Z
New upstream version, adapt patches

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e2d6098d by Andreas Tille at 2018-08-13T11:57:04Z
README ist now README.md

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8b989002 by Andreas Tille at 2018-08-13T11:57:31Z
debhelper 11

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8c6d555d by Andreas Tille at 2018-08-13T11:57:35Z
Point Vcs fields to salsa.debian.org

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28ce9e16 by Andreas Tille at 2018-08-13T11:57:35Z
Standards-Version: 4.2.0

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6c19f551 by Andreas Tille at 2018-08-13T12:03:45Z
Update copyright

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951555ec by Andreas Tille at 2018-08-13T12:05:38Z
Upload to unstable

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30 changed files:

- + .gitignore
- + .gitmodules
- DInDel.cpp
- Faster.cpp
- GetCandidates.cpp
- Haplotype.hpp
- HaplotypeDistribution.hpp
- + LICENSE
- Makefile
- OutputData.hpp
- − README
- + README.md
- Read.hpp
- StringHash.hpp
- debian/README.source
- debian/changelog
- debian/compat
- debian/control
- debian/copyright
- debian/docs
- debian/patches/fix-ftbfs-with-gcc6.patch
- − debian/patches/fix-ftbfs-with-new-boost.patch
- debian/patches/modernize-Makefile.patch
- debian/patches/series
- debian/watch
- − digamma.hpp
- − foreach.hpp
- + python/convertVCFToDindel.py
- + python/makeGenotypeLikelihoodFilePooled.py
- + python/makeWindows.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/dindel/compare/1fb2ff9843f8d2013f0b7bd9148a87ee662b16f1...951555ec05d059cc263e88c183122d28eae7998e

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View it on GitLab: https://salsa.debian.org/med-team/dindel/compare/1fb2ff9843f8d2013f0b7bd9148a87ee662b16f1...951555ec05d059cc263e88c183122d28eae7998e
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