[med-svn] [Git][med-team/htsjdk][master] 5 commits: New upstream version 2.18.0+dfsg

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / htsjdk


Commits:
5a9aa210 by Andreas Tille at 2018-12-02T10:18:04Z
New upstream version 2.18.0+dfsg
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926a3c7c by Andreas Tille at 2018-12-02T10:18:29Z
Update upstream source from tag 'upstream/2.18.0+dfsg'

Update to upstream version '2.18.0+dfsg'
with Debian dir 9d9f71ae3629b48e8c59bd9030eed4c13d6b2f5d
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655fc096 by Andreas Tille at 2018-12-02T10:18:29Z
New upstream version

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c54ab130 by Andreas Tille at 2018-12-02T10:30:54Z
Refresh patches

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d98b4331 by Andreas Tille at 2018-12-02T10:51:20Z
Add TODO

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30 changed files:

- README.md
- build.gradle
- debian/changelog
- debian/patches/100-fix-java11
- debian/patches/13-skip_network_tests
- debian/patches/20-fix-version.patch
- debian/patches/30-disable-scalatest.patch
- debian/patches/40-fix-java9
- debian/patches/60-enable-tests
- debian/patches/90-disable-testftp.patch
- src/main/java/htsjdk/samtools/AbstractSAMHeaderRecord.java
- src/main/java/htsjdk/samtools/BAMRecord.java
- src/main/java/htsjdk/samtools/CRAMIterator.java
- − src/main/java/htsjdk/samtools/FixBAMFile.java
- src/main/java/htsjdk/samtools/LinearIndex.java
- src/main/java/htsjdk/samtools/SAMBinaryTagAndUnsignedArrayValue.java
- src/main/java/htsjdk/samtools/SAMBinaryTagAndValue.java
- src/main/java/htsjdk/samtools/SAMFileHeader.java
- src/main/java/htsjdk/samtools/SAMFileWriterImpl.java
- src/main/java/htsjdk/samtools/SAMLineParser.java
- src/main/java/htsjdk/samtools/SAMRecord.java
- src/main/java/htsjdk/samtools/SAMRecordSetBuilder.java
- src/main/java/htsjdk/samtools/SAMSequenceDictionary.java
- src/main/java/htsjdk/samtools/SAMSequenceRecord.java
- src/main/java/htsjdk/samtools/SAMSortOrderChecker.java
- src/main/java/htsjdk/samtools/SAMTag.java
- src/main/java/htsjdk/samtools/SAMTagUtil.java
- src/main/java/htsjdk/samtools/SAMTextHeaderCodec.java
- src/main/java/htsjdk/samtools/SAMTextWriter.java
- − src/main/java/htsjdk/samtools/SAMTools.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/htsjdk/compare/8d38b196cdb812758f2e4666727f7e4aaabcff0f...d98b433135cf59e0060288b4075bfa3ed55f9d13

-- 
View it on GitLab: https://salsa.debian.org/med-team/htsjdk/compare/8d38b196cdb812758f2e4666727f7e4aaabcff0f...d98b433135cf59e0060288b4075bfa3ed55f9d13
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